RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7210
         (159 letters)



>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding
           domains {Human (Homo sapiens) [TaxId: 9606]}
          Length = 100

 Score = 24.4 bits (53), Expect = 4.0
 Identities = 9/39 (23%), Positives = 14/39 (35%)

Query: 116 PPRNSPILDDTISSKRYPDINHAKIDSWTEFASWTHLAN 154
           P     I++ T SS  + DI    I       ++  L  
Sbjct: 52  PKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQ 90


>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion
           and metastasis inducing protein 1) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 162

 Score = 24.8 bits (54), Expect = 4.2
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 34  FKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYK 93
           FK  V++ Y   +       +   +  +   SI   +D F F+  IP  A Q+    +  
Sbjct: 57  FKTAVVLVYKDGS------KQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPSAD 110

Query: 94  TENEEFWD 101
            E     +
Sbjct: 111 AEANAVCE 118


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.419 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 627,667
Number of extensions: 27155
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 7
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.4 bits)