BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7211
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EEF|A Chain A, Solution Structure Of The Cbm_21 Domain From Human Protein
Phosphatase 1, Regulatory (Inhibitor) Subunit 3b
Length = 156
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 15/144 (10%)
Query: 141 FSQPASNYLEFRKRLDEGKVSLENVIVKESENLVTGTVKVRNLSFKKEVIIRYSTNNWTT 200
FSQP+++YL+FR RL V LEN ++K+ + GTVKV+NL+F+K V IR + + W +
Sbjct: 17 FSQPSADYLDFRNRLQADHVCLENCVLKDKA--IAGTVKVQNLAFEKTVKIRMTFDTWKS 74
Query: 201 FTDVKCAYVPSATPSSITIVYDTFAFQISIP---KSAHQIEFCIAYKTENEEFWDNNNSK 257
+TD C YV S DTF+F IS+P +S ++EF + Y+ + +WD+N K
Sbjct: 75 YTDFPCQYVKDTYAGSDR---DTFSFDISLPEKIQSYERMEFAVYYECNGQTYWDSNRGK 131
Query: 258 NYII-------KKGIAPPRNSPIL 274
NY I +G+ P + P L
Sbjct: 132 NYRIIRAELKSTQGMTKPHSGPDL 155
>pdb|2DJM|A Chain A, Solution Structure Of N-Terminal Starch-Binding Domain Of
Glucoamylase From Rhizopus Oryzae
pdb|2V8L|A Chain A, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
pdb|2V8M|A Chain A, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
pdb|2V8M|B Chain B, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
pdb|2V8M|C Chain C, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
pdb|2V8M|D Chain D, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
pdb|2VQ4|A Chain A, Carbohydrate-Binding Of The Starch Binding Domain Of
Rhizopus Oryzae Glucoamylase In Complex With Beta-
Cyclodextrin And Maltoheptaose
Length = 106
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 175 TGTVKVRNLSFKKEVIIRYS--TNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPK 232
+G + V+N+++ K+V + Y+ ++NW ++ A S Y+ + F S+
Sbjct: 22 SGKIYVKNIAYSKKVTVVYADGSDNWNNNGNIIAASFSGPISGS---NYEYWTFSASVKG 78
Query: 233 SAHQIEFCIAYKTENEEFWDNNNSKNY 259
EF I Y+ + ++DNNNS NY
Sbjct: 79 IK---EFYIKYEVSGKTYYDNNNSANY 102
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 219 IVYDTFAFQISIPKSAHQIEFCIAYKTEN-EEFWDNNNSKNYIIKKGIAPPRNSPILD 275
I Y++ +I IPKS I+ I YK EN E+ ++N+KNY+ + + +N IL+
Sbjct: 131 IFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE 188
>pdb|3EGG|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGH|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3HVQ|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 329
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 136 LWEIMFSQPASNYLEFRKRLDEGKVSLENVI------VKESEN--LVTGTVKV----RNL 183
L+E P SNYL +D GK SLE + +K EN L+ G + R
Sbjct: 74 LFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIY 133
Query: 184 SFKKEVIIRYSTNNWTTFTDV 204
F E RY+ W TFTD
Sbjct: 134 GFYDECKRRYNIKLWKTFTDC 154
>pdb|1FJM|A Chain A, Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isoform, Type
1) Complexed With Microcystin-Lr Toxin
pdb|1FJM|B Chain B, Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isoform, Type
1) Complexed With Microcystin-Lr Toxin
Length = 330
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 136 LWEIMFSQPASNYLEFRKRLDEGKVSLENVI------VKESEN--LVTGTVKV----RNL 183
L+E P SNYL +D GK SLE + +K EN L+ G + R
Sbjct: 75 LFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIY 134
Query: 184 SFKKEVIIRYSTNNWTTFTDV 204
F E RY+ W TFTD
Sbjct: 135 GFYDECKRRYNIKLWKTFTDC 155
>pdb|4G9J|A Chain A, Protein SerTHR PHOSPHATASE-1 In Complex With
Cell-Permeable Peptide
pdb|4G9J|B Chain B, Protein SerTHR PHOSPHATASE-1 In Complex With
Cell-Permeable Peptide
Length = 331
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 136 LWEIMFSQPASNYLEFRKRLDEGKVSLENVI------VKESEN--LVTGTVKV----RNL 183
L+E P SNYL +D GK SLE + +K EN L+ G + R
Sbjct: 76 LFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIY 135
Query: 184 SFKKEVIIRYSTNNWTTFTDV 204
F E RY+ W TFTD
Sbjct: 136 GFYDECKRRYNIKLWKTFTDC 156
>pdb|3E7A|A Chain A, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Nodularin-R
pdb|3E7A|B Chain B, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Nodularin-R
pdb|3E7B|A Chain A, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Inhibitor Tautomycin
pdb|3E7B|B Chain B, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Inhibitor Tautomycin
Length = 299
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 144 PASNYLEFRKRLDEGKVSLENVI------VKESEN--LVTGTVKV----RNLSFKKEVII 191
P SNYL +D GK SLE + +K EN L+ G + R F E
Sbjct: 82 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKR 141
Query: 192 RYSTNNWTTFTDV 204
RY+ W TFTD
Sbjct: 142 RYNIKLWKTFTDC 154
>pdb|3V4Y|A Chain A, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|C Chain C, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|E Chain E, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|G Chain G, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
Length = 306
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 144 PASNYLEFRKRLDEGKVSLENVI------VKESEN--LVTGTVKV----RNLSFKKEVII 191
P SNYL +D GK SLE + +K EN L+ G + R F E
Sbjct: 82 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKR 141
Query: 192 RYSTNNWTTFTDV 204
RY+ W TFTD
Sbjct: 142 RYNIKLWKTFTDC 154
>pdb|2O8A|A Chain A, Rat Pp1cgamma Complexed With Mouse Inhibitor-2
pdb|2O8A|B Chain B, Rat Pp1cgamma Complexed With Mouse Inhibitor-2
pdb|2O8G|A Chain A, Rat Pp1c Gamma Complexed With Mouse Inhibitor-2
pdb|2O8G|B Chain B, Rat Pp1c Gamma Complexed With Mouse Inhibitor-2
Length = 329
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 136 LWEIMFSQPASNYLEFRKRLDEGKVSLENVI------VKESEN--LVTGTVKV----RNL 183
L+E P SNYL +D GK SLE + +K EN L+ G + R
Sbjct: 81 LFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIY 140
Query: 184 SFKKEVIIRYSTNNWTTFTDV 204
F E RY+ W TFTD
Sbjct: 141 GFYDECKRRYNIKLWKTFTDC 161
>pdb|1JK7|A Chain A, Crystal Structure Of The Tumor-Promoter Okadaic Acid Bound
To Protein Phosphatase-1
pdb|1IT6|A Chain A, Crystal Structure Of The Complex Between Calyculin A And
The Catalytic Subunit Of Protein Phosphatase 1
pdb|1IT6|B Chain B, Crystal Structure Of The Complex Between Calyculin A And
The Catalytic Subunit Of Protein Phosphatase 1
pdb|2BCD|A Chain A, X-Ray Crystal Structure Of Protein Phosphatase-1 With The
Marine Toxin Motuporin Bound
pdb|2BDX|A Chain A, X-Ray Crystal Structure Of Dihydromicrocystin-La Bound To
Protein Phosphatase-1
Length = 323
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 144 PASNYLEFRKRLDEGKVSLENVI------VKESEN--LVTGTVKV----RNLSFKKEVII 191
P SNYL +D GK SLE + +K EN L+ G + R F E
Sbjct: 83 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKR 142
Query: 192 RYSTNNWTTFTDV 204
RY+ W TFTD
Sbjct: 143 RYNIKLWKTFTDC 155
>pdb|3N5U|A Chain A, Crystal Structure Of An Rb C-Terminal Peptide Bound To The
Catalytic Subunit Of Pp1
pdb|3N5U|B Chain B, Crystal Structure Of An Rb C-Terminal Peptide Bound To The
Catalytic Subunit Of Pp1
Length = 300
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 144 PASNYLEFRKRLDEGKVSLENVI------VKESEN--LVTGTVKV----RNLSFKKEVII 191
P SNYL +D GK SLE + +K EN L+ G + R F E
Sbjct: 83 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKR 142
Query: 192 RYSTNNWTTFTDV 204
RY+ W TFTD
Sbjct: 143 RYNIKLWKTFTDC 155
>pdb|1U32|A Chain A, Crystal Structure Of A Protein Phosphatase-1: Calcineurin
Hybrid Bound To Okadaic Acid
Length = 293
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 144 PASNYLEFRKRLDEGKVSLENVI------VKESEN--LVTGTVKV----RNLSFKKEVII 191
P SNYL +D GK SLE + +K EN L+ G + R F E
Sbjct: 78 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKR 137
Query: 192 RYSTNNWTTFTDV 204
RY+ W TFTD
Sbjct: 138 RYNIKLWKTFTDC 150
>pdb|1S70|A Chain A, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 330
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 136 LWEIMFSQPASNYLEFRKRLDEGKVSLENVI------VKESEN--LVTGTVKV----RNL 183
L+E P +NYL +D GK SLE + +K EN L+ G + R
Sbjct: 77 LFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIY 136
Query: 184 SFKKEVIIRYSTNNWTTFTDV 204
F E R++ W TFTD
Sbjct: 137 GFYDECKRRFNIKLWKTFTDC 157
>pdb|1YRK|A Chain A, The C2 Domain Of Pkc Is A New Phospho-Tyrosine
Binding Domain
Length = 126
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 65 EDGNVSSGDENDPPSPTRIKKKVIFADDKGLSLTQVRLVKERPTSPPRWNSQFLALVTQG 124
E G++ + DE + P +K K + ++G +L Q ++PT P W S F A + +G
Sbjct: 16 ELGSLQAEDEANQPF-CAVKMKEALSTERGKTLVQ-----KKPTMYPEWKSTFDAHIYEG 69
Query: 125 LNTEII 130
+I+
Sbjct: 70 RVIQIV 75
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 59 CLVTRPEDGNVSSGDENDPPSPTRI 83
C R EDG + GD D PSPT++
Sbjct: 26 CSWGRGEDGQLGHGDAEDRPSPTQL 50
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 59 CLVTRPEDGNVSSGDENDPPSPTRI 83
C R EDG + GD D PSPT++
Sbjct: 38 CSWGRGEDGQLGHGDAEDRPSPTQL 62
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 59 CLVTRPEDGNVSSGDENDPPSPTRI 83
C R EDG + GD D PSPT++
Sbjct: 26 CSWGRGEDGQLGHGDAEDRPSPTQL 50
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 59 CLVTRPEDGNVSSGDENDPPSPTRI 83
C R EDG + GD D PSPT++
Sbjct: 28 CSWGRGEDGQLGHGDAEDRPSPTQL 52
>pdb|1BDY|A Chain A, C2 Domain From Protein Kinase C Delta
pdb|1BDY|B Chain B, C2 Domain From Protein Kinase C Delta
Length = 123
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 65 EDGNVSSGDENDPPSPTRIKKKVIFADDKGLSLTQVRLVKERPTSPPRWNSQFLALVTQG 124
E G++ + D+ P +K K D+G +L Q ++PT P W S F A + +G
Sbjct: 13 ELGSLQAEDDASQPF-CAVKMKEALTTDRGKTLVQ-----KKPTMYPEWKSTFDAHIYEG 66
Query: 125 LNTEII 130
+I+
Sbjct: 67 RVIQIV 72
>pdb|1Z6I|A Chain A, Crystal Structure Of The Ectodomain Of Drosophila
Transmembrane Receptor Pgrp-Lca
Length = 167
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 260 IIKKGIAPPRNSPILDDTISSKRYPDINHAKIDS-WTEFASWTH 302
++++G+ + +P T SSK P + K D+ + FA+WTH
Sbjct: 122 LLERGVKLGKIAPSYRFTASSKLMPSVTDFKADALYASFANWTH 165
>pdb|2F2L|A Chain A, Crystal Structure Of Tracheal Cytotoxin (Tct) Bound To The
Ectodomain Complex Of Peptidoglycan Recognition Proteins
Lca (Pgrp-Lca) And Lcx (Pgrp-Lcx)
Length = 167
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 260 IIKKGIAPPRNSPILDDTISSKRYPDINHAKIDS-WTEFASWTH 302
++++G+ + +P T SSK P + K D+ + FA+WTH
Sbjct: 122 LLERGVKLGKIAPSYRFTASSKLMPSVTDFKADALYASFANWTH 165
>pdb|4AVP|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|C Chain C, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|D Chain D, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4B06|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Etv1
Complexed With Dna
Length = 106
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 114 NSQFLALVTQGLNTEIIEPNN--DLWEIMFSQPASNYLEFRKRL 155
NS F+A +G+ ++IEP W I ++PA NY + + L
Sbjct: 27 NSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSL 70
>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp Bound
pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp Bound
pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp And Moa Bound
Length = 503
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 117 FLALVTQGLNTEIIEPNNDLWE-------IMFSQPASNYLEFRKRLDEGKVSLENVIVKE 169
F LVT +T++ E N +WE I+ Y+ FRK D +V ++ +
Sbjct: 170 FSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNELVDSQ 229
Query: 170 SENLVTGTVKVRNL 183
LV + R+
Sbjct: 230 KRYLVGAGINTRDF 243
>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp And Moa Bound
pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Mycophenolic Acid
Bound
pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Nad Bound
pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
Tritrichomonas Foetus
Length = 503
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 117 FLALVTQGLNTEIIEPNNDLWE-------IMFSQPASNYLEFRKRLDEGKVSLENVIVKE 169
F LVT +T++ E N +WE I+ Y+ FRK D +V ++ +
Sbjct: 170 FSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNELVDSQ 229
Query: 170 SENLVTGTVKVRNL 183
LV + R+
Sbjct: 230 KRYLVGAGINTRDF 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,000,572
Number of Sequences: 62578
Number of extensions: 409200
Number of successful extensions: 931
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 28
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)