Query psy7211
Match_columns 312
No_of_seqs 210 out of 444
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 20:59:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eef_A Protein phosphatase 1, 100.0 5.4E-46 1.8E-50 323.2 15.1 125 135-264 11-138 (156)
2 2djm_A Glucoamylase A; beta sa 100.0 2.2E-38 7.5E-43 259.5 12.2 98 156-262 5-105 (106)
3 4eib_A Glucoamylase; beta barr 99.9 1.5E-21 5.3E-26 159.7 11.5 78 159-246 28-109 (109)
4 2laa_A Beta/alpha-amylase; SBD 98.1 6E-06 2.1E-10 67.0 6.2 65 186-264 15-82 (104)
5 2c3v_A Alpha-amylase G-6; carb 98.0 6.1E-06 2.1E-10 66.8 5.2 66 186-264 20-87 (102)
6 4eib_A Glucoamylase; beta barr 96.6 0.00036 1.2E-08 57.0 0.1 20 247-266 2-21 (109)
7 2qlv_B Protein SIP2, protein S 52.5 33 0.0011 31.1 7.1 48 187-248 15-62 (252)
8 3nme_A Ptpkis1 protein, SEX4 g 35.4 58 0.002 29.7 5.9 59 174-248 170-228 (294)
9 3o0l_A Uncharacterized protein 26.4 1.1E+02 0.0038 24.2 5.4 39 157-196 23-61 (112)
10 4b9f_A Cellulosomal-scaffoldin 24.0 1.2E+02 0.0041 25.2 5.4 24 172-195 16-43 (152)
11 2cci_F Cell division control p 21.3 60 0.002 20.3 2.2 19 73-91 12-30 (30)
No 1
>2eef_A Protein phosphatase 1, regulatory (inhibitor) subunit 3B; CBM_21 domain, carbohydrate binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=5.4e-46 Score=323.21 Aligned_cols=125 Identities=40% Similarity=0.804 Sum_probs=117.1
Q ss_pred cceEEcccCCcccHHHHHHHhhcCCeEEEEEEEecCCceEEEEEEEecCCCCcEEEEEEEeCCCceeeEEEEEEeCCCCC
Q psy7211 135 DLWEIMFSQPASNYLEFRKRLDEGKVSLENVIVKESENLVTGTVKVRNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATP 214 (312)
Q Consensus 135 ~~l~l~F~QP~sdy~~Fr~rl~~q~V~LE~v~l~~~~~~L~GtV~V~NlafeK~V~VRyT~D~W~T~~Dv~A~Yv~~~~~ 214 (312)
..|.++|+||++||++|++||++|+||||+|.+++ ..|.|+|+|+||+|||+|+||||+|+|+|++|++|.|+++..+
T Consensus 11 ~~~~~~F~qP~~d~~~F~~rl~~~~V~LE~~~~~~--~~l~GtV~V~NlafeK~V~VR~T~D~Wkt~~dv~a~y~~~~~~ 88 (156)
T 2eef_A 11 ESFVLDFSQPSADYLDFRNRLQADHVCLENCVLKD--KAIAGTVKVQNLAFEKTVKIRMTFDTWKSYTDFPCQYVKDTYA 88 (156)
T ss_dssp CCEEESSCCSTTCHHHHHHHHHHSSEEEEEEEEET--TEEEEEEEECCSSSCCEEEEEEESSTTSSEEEEECEECCCSSS
T ss_pred ceEEecCCCCcchhHHHHHHHhhCcEEEEEEEeCC--CEEEEEEEEeccCCCcEEEEEEeECCCcccEEEEEEEccccCC
Confidence 56999999999999999999999999999999975 7999999999999999999999999999999999999988643
Q ss_pred CCCCcceeEEEEEEEcCCC---CceEEEEEEEEcCCceeeecCCCcceEEEee
Q psy7211 215 SSITIVYDTFAFQISIPKS---AHQIEFCIAYKTENEEFWDNNNSKNYIIKKG 264 (312)
Q Consensus 215 ~~~~~~~D~FsF~i~Lp~~---~~~iEFcIrY~~~g~eyWDNN~G~NY~v~~~ 264 (312)
+ .++|+|+|.|.||+. ..+|||||||+++|+||||||+|+||+|.+.
T Consensus 89 ~---~~~D~F~F~I~lp~~~~~~~~leFcIrY~v~g~eyWDNN~G~NY~v~~~ 138 (156)
T 2eef_A 89 G---SDRDTFSFDISLPEKIQSYERMEFAVYYECNGQTYWDSNRGKNYRIIRA 138 (156)
T ss_dssp C---SSSCEEEECCCCCSCCCTTSCCEEEEEEEETTEEEEESGGGSCCCEEET
T ss_pred C---CCceEEEEEEECCCccCCCcEEEEEEEEEeCCCEEecCCCCeeEEEEEE
Confidence 3 458999999999984 4899999999999999999999999999988
No 2
>2djm_A Glucoamylase A; beta sandwich, anti-parallel, strach binding, carbohydrate binding, sugar binding protein; NMR {Rhizopus oryzae} PDB: 2v8l_A* 2v8m_A* 2vq4_A
Probab=100.00 E-value=2.2e-38 Score=259.54 Aligned_cols=98 Identities=24% Similarity=0.518 Sum_probs=90.5
Q ss_pred hcCCeEEEEEEEecCCceEEEEEEEecCCCCcEEEEEEE--eCCCce-eeEEEEEEeCCCCCCCCCcceeEEEEEEEcCC
Q psy7211 156 DEGKVSLENVIVKESENLVTGTVKVRNLSFKKEVIIRYS--TNNWTT-FTDVKCAYVPSATPSSITIVYDTFAFQISIPK 232 (312)
Q Consensus 156 ~~q~V~LE~v~l~~~~~~L~GtV~V~NlafeK~V~VRyT--~D~W~T-~~Dv~A~Yv~~~~~~~~~~~~D~FsF~i~Lp~ 232 (312)
++|+||||++.++ +..|.|+|+|+||+|||.|.|||| +|+|+| ++|++|.|+++.+. .++|+|+|.|.||+
T Consensus 5 ~~~~V~LE~~~~~--~~~l~GtV~V~NlafeK~V~VR~T~~~D~W~t~~~dv~a~y~~~~~~----~~~D~F~F~i~l~~ 78 (106)
T 2djm_A 5 SSASVQLDSYNYD--GSTFSGKIYVKNIAYSKKVTVVYADGSDNWNNNGNIIAASFSGPISG----SNYEYWTFSASVKG 78 (106)
T ss_dssp SSSSEEEEEEEES--SSCEEEEEEECCSSSCEEEEEEEEETTSSCSSCCCEEECEEEEECTT----SSCEEEEEEECCSS
T ss_pred cCCcEEEEEEEEC--CCEEEEEEEEeecCcCcEEEEEECCCcCCCccccEEEEEEEecCCCC----CCeEEEEEEEECCC
Confidence 5789999999995 478999999999999999999999 999999 99999999987532 46899999999985
Q ss_pred CCceEEEEEEEEcCCceeeecCCCcceEEE
Q psy7211 233 SAHQIEFCIAYKTENEEFWDNNNSKNYIIK 262 (312)
Q Consensus 233 ~~~~iEFcIrY~~~g~eyWDNN~G~NY~v~ 262 (312)
.+||||||+++|+||||||+|+||+|.
T Consensus 79 ---~~eFcIrY~v~g~eyWDNN~g~NY~v~ 105 (106)
T 2djm_A 79 ---IKEFYIKYEVSGKTYYDNNNSANYQVS 105 (106)
T ss_dssp ---EEEEEEEEEESSCEEEECSSSSCEECC
T ss_pred ---CeEEEEEEEECCcEEEcCCCCeeEEEe
Confidence 679999999999999999999999985
No 3
>4eib_A Glucoamylase; beta barrel, starch binding, amylose, hydrolase; 1.86A {Rhizopus oryzae}
Probab=99.86 E-value=1.5e-21 Score=159.65 Aligned_cols=78 Identities=22% Similarity=0.482 Sum_probs=70.5
Q ss_pred CeEEEEEEEecCCceEEEEEEEecCCCCcEEEEEEEe--CCCce--eeEEEEEEeCCCCCCCCCcceeEEEEEEEcCCCC
Q psy7211 159 KVSLENVIVKESENLVTGTVKVRNLSFKKEVIIRYST--NNWTT--FTDVKCAYVPSATPSSITIVYDTFAFQISIPKSA 234 (312)
Q Consensus 159 ~V~LE~v~l~~~~~~L~GtV~V~NlafeK~V~VRyT~--D~W~T--~~Dv~A~Yv~~~~~~~~~~~~D~FsF~i~Lp~~~ 234 (312)
.||||++...+ ..|.|+|+|+||||||.|+||||+ |+|+| +. +.|.|+.+... .++|+|.|.+++|.
T Consensus 28 ~V~Les~~~~~--~~LsGtI~V~NlAyeK~V~VrYs~~~d~W~s~~~~-~~A~y~s~~~~----~~~e~~~F~~~apG-- 98 (109)
T 4eib_A 28 SVQLDSYNYDG--STFSGKIYVKNIAYSKKVTVVYADGSDNWNNNGNI-IAASFSGPISG----SNYEYWTFSASVKG-- 98 (109)
T ss_dssp SEEEEEEEECS--SEEEEEEEEECCSSCEEEEEEEECTTSCCTTTTCE-EECEEEEECTT----SSEEEEEEEEECSC--
T ss_pred eEEEEEEEEeC--CEEEEEEEEEecccceEEEEEEeecCCCcccCCcE-eeEEEecCCCC----CCeEEEEEEEECCC--
Confidence 69999999864 789999999999999999999999 99999 99 99999987532 46899999999983
Q ss_pred ceEEEEEEEEcC
Q psy7211 235 HQIEFCIAYKTE 246 (312)
Q Consensus 235 ~~iEFcIrY~~~ 246 (312)
.+||||||+|+
T Consensus 99 -a~qFaIrY~V~ 109 (109)
T 4eib_A 99 -IKEFYIKYEVS 109 (109)
T ss_dssp -CCEEEEEEEEC
T ss_pred -CEEEEEEEEeC
Confidence 59999999985
No 4
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=98.05 E-value=6e-06 Score=67.03 Aligned_cols=65 Identities=28% Similarity=0.502 Sum_probs=50.4
Q ss_pred CcEEEEEEEeC--CCceeeEEEEEEeCCCCCCCCCcceeEE-EEEEEcCCCCceEEEEEEEEcCCceeeecCCCcceEEE
Q psy7211 186 KKEVIIRYSTN--NWTTFTDVKCAYVPSATPSSITIVYDTF-AFQISIPKSAHQIEFCIAYKTENEEFWDNNNSKNYIIK 262 (312)
Q Consensus 186 eK~V~VRyT~D--~W~T~~Dv~A~Yv~~~~~~~~~~~~D~F-sF~i~Lp~~~~~iEFcIrY~~~g~eyWDNN~G~NY~v~ 262 (312)
-++|+|+|.++ +|.+..++...-.. ++.| +.+|+||. ...||||++ +|..-||||+|+||.+.
T Consensus 15 ~~~vylHyg~~~g~Wt~~~~v~M~~~~----------~~gw~~~TI~l~~-g~~~~~~F~---dG~~~WDNn~g~Nyt~~ 80 (104)
T 2laa_A 15 FNSPYIHYRPAGGSWTAAPGVKMQDAE----------ISGYAKITVDIGS-ASQLEAAFN---DGNNNWDSNNTKNYSFS 80 (104)
T ss_dssp SSSCEEEEEETTSCCCSSSCEECEEET----------TTTEEEEEEECTT-CSCEEEEEE---CSSSCEESTTTSCEEEC
T ss_pred CCcEEEEEcCCCCCCCcCCcccccccc----------CCCeEEEEEECCC-CCEEEEEEe---CCCCcCcCCCCccEEec
Confidence 46799999984 78887776664322 2346 58899986 689999994 88899999999999997
Q ss_pred ee
Q psy7211 263 KG 264 (312)
Q Consensus 263 ~~ 264 (312)
..
T Consensus 81 ~g 82 (104)
T 2laa_A 81 TG 82 (104)
T ss_dssp SE
T ss_pred CC
Confidence 54
No 5
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*
Probab=98.00 E-value=6.1e-06 Score=66.79 Aligned_cols=66 Identities=24% Similarity=0.381 Sum_probs=50.6
Q ss_pred CcEEEEEEEeCC--CceeeEEEEEEeCCCCCCCCCcceeEEEEEEEcCCCCceEEEEEEEEcCCceeeecCCCcceEEEe
Q psy7211 186 KKEVIIRYSTNN--WTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKTENEEFWDNNNSKNYIIKK 263 (312)
Q Consensus 186 eK~V~VRyT~D~--W~T~~Dv~A~Yv~~~~~~~~~~~~D~FsF~i~Lp~~~~~iEFcIrY~~~g~eyWDNN~G~NY~v~~ 263 (312)
-+.|.|+|.+++ |.+..++.+.-.. +. .-|+.+|.++. ..+||||+ .+|..-||||+|+||.+..
T Consensus 20 ~~~~ylHy~~~~g~Wt~vpgv~M~~~~--~~-------Gw~~~TI~~~~-~~~l~~~F---~dG~~~WDNN~g~Ny~~~~ 86 (102)
T 2c3v_A 20 WTHPHIHYSLNQGAWTTLPGVPLTKSE--XE-------GXVKVTIEAEE-GSQLRAAF---NNGSGQWDNNQGRDYDFSS 86 (102)
T ss_dssp CSSCEEEEEETTCCBCCTTCEECEECS--ST-------TEEEEEECCCT-TCEEEEEE---ECSSSCEECGGGTCEEEES
T ss_pred CCcEEEEEeCCCCCcccCCCcCccccc--cC-------CceEEEEecCC-CceEEEEE---eCCCcccccCCCcceEECC
Confidence 467999999965 8888777765421 11 23678888875 58999998 6778899999999999964
Q ss_pred e
Q psy7211 264 G 264 (312)
Q Consensus 264 ~ 264 (312)
.
T Consensus 87 g 87 (102)
T 2c3v_A 87 G 87 (102)
T ss_dssp E
T ss_pred C
Confidence 3
No 6
>4eib_A Glucoamylase; beta barrel, starch binding, amylose, hydrolase; 1.86A {Rhizopus oryzae}
Probab=96.58 E-value=0.00036 Score=57.01 Aligned_cols=20 Identities=40% Similarity=0.752 Sum_probs=17.3
Q ss_pred CceeeecCCCcceEEEeeeC
Q psy7211 247 NEEFWDNNNSKNYIIKKGIA 266 (312)
Q Consensus 247 g~eyWDNN~G~NY~v~~~~~ 266 (312)
||+|||||+|+||++-....
T Consensus 2 g~ty~d~n~~~~~~~~~~~~ 21 (109)
T 4eib_A 2 GKTYYDNNNSANYQVSTHMA 21 (109)
T ss_dssp CCCCCCCTTTTCCCCCCCCC
T ss_pred CceeecCCCCcceEeccccc
Confidence 89999999999999876643
No 7
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1
Probab=52.49 E-value=33 Score=31.11 Aligned_cols=48 Identities=13% Similarity=0.253 Sum_probs=32.8
Q ss_pred cEEEEEEEeCCCceeeEEEEEEeCCCCCCCCCcceeEEEEEEEcCCCCceEEEEEEEEcCCc
Q psy7211 187 KEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKTENE 248 (312)
Q Consensus 187 K~V~VRyT~D~W~T~~Dv~A~Yv~~~~~~~~~~~~D~FsF~i~Lp~~~~~iEFcIrY~~~g~ 248 (312)
++|.|.=+||+|+.. ++.....+. -..|+.++.||++ .+-.+|.++|+
T Consensus 15 ~~V~V~GsF~~W~~~--~~m~k~~~~--------~G~f~~tv~LppG----~y~YKFiVDG~ 62 (252)
T 2qlv_B 15 SKVYVTGSFTKWRKM--IGLIPDSDN--------NGSFHVKLRLLPG----THRFRFIVDNE 62 (252)
T ss_dssp SCEEEEEGGGTTSSC--EECEECSSS--------TTCEEEEEEECSE----EEEEEEEETTE
T ss_pred cEEEEEEEeCCCcCc--ccceeccCC--------CCcEEEEEECCCC----EEEEEEEECCE
Confidence 789999999999864 344433211 1369999999873 25556777774
No 8
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=35.37 E-value=58 Score=29.67 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=38.3
Q ss_pred EEEEEEEecCCCCcEEEEEEEeCCCceeeEEEEEEeCCCCCCCCCcceeEEEEEEEcCCCCceEEEEEEEEcCCc
Q psy7211 174 VTGTVKVRNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKTENE 248 (312)
Q Consensus 174 L~GtV~V~NlafeK~V~VRyT~D~W~T~~Dv~A~Yv~~~~~~~~~~~~D~FsF~i~Lp~~~~~iEFcIrY~~~g~ 248 (312)
..-+++...- --++|.|-=+||+|.+ .++.....+ ...|+.++.||+. . +-.+|.++|+
T Consensus 170 ~~v~f~~~~~-~~~~V~v~GsF~~W~~--~~~l~k~~~---------~g~~~~~~~L~~G--~--y~YkFiVDG~ 228 (294)
T 3nme_A 170 KTVTLTLKDK-GFSRVEISGLDIGWGQ--RIPLTLGKG---------TGFWILKRELPEG--Q--FEYKYIIDGE 228 (294)
T ss_dssp EEEEEEEECS-SCSCEEEEETTTEEEE--EEECEECTT---------TCEEEEEEEECSE--E--EEEEEEETTE
T ss_pred ccceeeeccC-CCCEEEEEEeccCCCC--cccceEcCC---------CCEEEEEEECCCc--e--EEEEEEECCE
Confidence 3444444443 3477999999999983 455555432 1469999999873 3 4457778874
No 9
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=26.41 E-value=1.1e+02 Score=24.19 Aligned_cols=39 Identities=10% Similarity=0.182 Sum_probs=32.3
Q ss_pred cCCeEEEEEEEecCCceEEEEEEEecCCCCcEEEEEEEeC
Q psy7211 157 EGKVSLENVIVKESENLVTGTVKVRNLSFKKEVIIRYSTN 196 (312)
Q Consensus 157 ~q~V~LE~v~l~~~~~~L~GtV~V~NlafeK~V~VRyT~D 196 (312)
...|.++++.+...+..+.+.+.|+|- .++.+.|.|-|.
T Consensus 23 a~~i~v~~~~~~~~~g~l~~~~~l~N~-~~~~~~l~Yrf~ 61 (112)
T 3o0l_A 23 HSDVDVSAVTTQAEAGFLRARGTIISK-SPKDQRLQYKFT 61 (112)
T ss_dssp EEEEEEEEEEEECGGGCEEEEEEEEEC-SSSCEEEEEEEE
T ss_pred cCCEEEeCCEEEecCCeEEEEEEEEeC-CCCCEEEEEEEE
Confidence 557889999988777899999999998 567788888873
No 10
>4b9f_A Cellulosomal-scaffolding protein A; sugar binding protein, cellulosome; 1.19A {Clostridium thermocellum atcc 27405} PDB: 1nbc_A
Probab=23.99 E-value=1.2e+02 Score=25.23 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=17.4
Q ss_pred ceEEEEEEEecCCCC----cEEEEEEEe
Q psy7211 172 NLVTGTVKVRNLSFK----KEVIIRYST 195 (312)
Q Consensus 172 ~~L~GtV~V~Nlafe----K~V~VRyT~ 195 (312)
..|.-.++|.|-.=. +.|.|||=|
T Consensus 16 n~i~p~~~i~N~g~~~i~LsdlkiRYyf 43 (152)
T 4b9f_A 16 NSINPQFKVTNTGSSAIDLSKLTLRYYY 43 (152)
T ss_dssp SCBCEEEEEEECSSSCEEGGGEEEEEEE
T ss_pred CEEeeEEEEEECCCCccccccEEEEEEE
Confidence 567777888876433 469999776
No 11
>2cci_F Cell division control protein 6 homolog; complex (transferase/cell division), protein kinases, cell C recruitment, substrate recognition; HET: TPO ATP; 2.7A {Homo sapiens}
Probab=21.31 E-value=60 Score=20.29 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=13.0
Q ss_pred CCCCCCCCcCCcceeEEec
Q psy7211 73 DENDPPSPTRIKKKVIFAD 91 (312)
Q Consensus 73 ~~~~~~~~~~~kKrV~FAD 91 (312)
++.+|.+.+.+.++.+|-|
T Consensus 12 engpp~~~t~kgrrLvFd~ 30 (30)
T 2cci_F 12 ENGPPHSHTLKGRRLVFDN 30 (30)
T ss_pred cCCCCcccccccceeeccC
Confidence 5566666667778888853
Done!