RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7211
(312 letters)
>gnl|CDD|217518 pfam03370, CBM_21, Putative phosphatase regulatory subunit. This
family consists of several eukaryotic proteins that are
thought to be involved in the regulation of glycogen
metabolism. For instance, the mouse PTG protein has been
shown to interact with glycogen synthase, phosphorylase
kinase, phosphorylase a: these three enzymes have key
roles in the regulation of glycogen metabolism. PTG also
binds the catalytic subunit of protein phosphatase 1
(PP1C) and localises it to glycogen. Subsets of similar
interactions have been observed with several other
members of this family, such as the yeast PIG1, PIG2,
GAC1 and GIP2 proteins. While the precise function of
these proteins is not known, they may serve a scaffold
function, bringing together the key enzymes in glycogen
metabolism. This family is a carbohydrate binding
domain.
Length = 108
Score = 140 bits (356), Expect = 5e-42
Identities = 49/111 (44%), Positives = 72/111 (64%), Gaps = 6/111 (5%)
Query: 154 RLDEGKVSLENVIVKESENLVTGTVKVRNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSAT 213
RL E KV LE++ + + + ++GTV+V+NL+F+K V +RY+ +NW TF+DV YVPS
Sbjct: 1 RLQEQKVCLESLFLSDDGSTLSGTVRVKNLAFEKSVTVRYTLDNWKTFSDVPAEYVPSYD 60
Query: 214 PSSITIVYDTFAFQISIPK---SAHQIEFCIAYKTENEEFWDNNNSKNYII 261
S YD F+F I +P ++EFCI Y+ +E+WDNNN KNY +
Sbjct: 61 GSDN---YDRFSFSIPLPPLLNEGKRLEFCIRYEVNGQEYWDNNNGKNYQV 108
>gnl|CDD|190631 pfam03423, CBM_25, Carbohydrate binding domain (family 25).
Length = 87
Score = 40.0 bits (94), Expect = 1e-04
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 13/81 (16%)
Query: 181 RNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATP--SSITIVYDTFAFQISIPKSAHQIE 238
L+ + EV R N WT P T S + + + +P A+ ++
Sbjct: 13 TPLNGRPEVHYRGGFNRWTH--------APGFTMRLSESELKGGWWKATVDVPGEAYVLD 64
Query: 239 FCIAYKTENEEFWDNNNSKNY 259
F +DNNN +Y
Sbjct: 65 FVFN---NGGGVYDNNNGNDY 82
>gnl|CDD|198134 smart01066, CBM_25, Carbohydrate binding domain.
Length = 83
Score = 33.5 bits (77), Expect = 0.020
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 14/71 (19%)
Query: 189 VIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYKTENE 248
+ + NNWT DV+ + V T K A+++ FC N
Sbjct: 22 LHYGFGENNWTDVPDVR------MEKTGEGWVKATIP-----VKEAYKLNFCFKDGAGN- 69
Query: 249 EFWDNNNSKNY 259
WDNN NY
Sbjct: 70 --WDNNGGANY 78
>gnl|CDD|163657 cd07414, MPP_PP1_PPKL, PP1, PPKL (PP1 and kelch-like) enzymes, and
related proteins, metallophosphatase domain. PP1
(protein phosphatase type 1) is a serine/threonine
phosphatase that regulates many cellular processes
including: cell-cycle progression, protein synthesis,
muscle contraction, carbohydrate metabolism,
transcription and neuronal signaling, through its
interaction with at least 180 known targeting proteins.
PP1 occurs in all tissues and regulates many pathways,
ranging from cell-cycle progression to carbohydrate
metabolism. Also included here are the PPKL (PP1 and
kelch-like) enzymes including the PPQ, PPZ1, and PPZ2
fungal phosphatases. These PPKLs have a large
N-terminal kelch repeat in addition to a C-terminal
phosphoesterase domain. The PPP (phosphoprotein
phosphatase) family, to which PP1 belongs, is one of two
known protein phosphatase families specific for serine
and threonine. The PPP family also includes: PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 293
Score = 33.5 bits (77), Expect = 0.12
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 12/73 (16%)
Query: 144 PASNYLEFRKRLDEGKVSLENVI------VKESEN--LVTGTVKVRNLS----FKKEVII 191
P SNYL +D GK SLE + +K EN L+ G + +++ F E
Sbjct: 76 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKR 135
Query: 192 RYSTNNWTTFTDV 204
RY+ W TFTD
Sbjct: 136 RYNIKLWKTFTDC 148
>gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase;
Provisional.
Length = 320
Score = 33.1 bits (75), Expect = 0.17
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 144 PASNYLEFRKRLDEGKVSLENVI------VKESEN--LVTGTVKVRNLS----FKKEVII 191
P SNYL +D GK SLE + +K EN L+ G + +++ F E
Sbjct: 85 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKR 144
Query: 192 RYSTNNWTTFTD 203
RY+ W TFTD
Sbjct: 145 RYTIKLWKTFTD 156
>gnl|CDD|239796 cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like
subfamily. This group contains matrix metalloproteinases
(MMPs), serralysins, and the astacin_like family of
proteases.
Length = 165
Score = 30.2 bits (68), Expect = 0.81
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 191 IRYSTNNWTTFTDVKCAYVPSAT-PSSITIVYDTFAF 226
IRYS W + D +Y PS P + I+
Sbjct: 46 IRYSVIRWIPYNDGTWSYGPSQVDPLTGEILLARVYL 82
>gnl|CDD|238014 cd00057, FA58C, Coagulation factor 5/8 C-terminal domain, discoidin
domain; Cell surface-attached carbohydrate-binding
domain, present in eukaryotes and assumed to have
horizontally transferred to eubacterial genomes.
Length = 143
Score = 28.5 bits (64), Expect = 2.3
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 187 KEVIIRYSTN--NWTTFTDVKCAYVPSATPSSITIVYDTF 224
++YS + WTT+ D V + T V + F
Sbjct: 76 TSYKVQYSLDGETWTTYKDKGEEKVFTGNSDGSTPVTNDF 115
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 29.4 bits (66), Expect = 3.3
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 2 PTDYEVLLSHSPPIFSQSYFGCRYQ-----PQRSPSALRRQ 37
D VLL S P + ++FGC Y P P + RR
Sbjct: 63 FGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYPPESARRH 103
>gnl|CDD|234187 TIGR03369, cellulose_bcsE, cellulose biosynthesis protein BcsE.
This protein, called BcsE (bacterial cellulose synthase
E) or YhjS, is required for cellulose biosynthesis in
Salmonella enteritidis. Its role is this process across
multiple bacterial species is implied by the partial
phylogenetic profiling algorithm. Members are found in
the vicinity of other cellulose biosynthesis genes. The
model does not include a much less well-conserved
N-terminal region about 150 amino acids in length for
most members. Solano, et al. suggest this protein acts
as a protease [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 322
Score = 28.8 bits (65), Expect = 4.0
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 17/84 (20%)
Query: 2 PTDYEVLLSHSPPIFSQSYFGCRYQP-----QRSPSALRRQFTTPSSLSLLKLQ-----A 51
P DYE LLS P ++ Y P L R S L+KL+
Sbjct: 196 PADYESLLSAVLPTAAKG-----YLPPDTFCSYVRKVLERSLVLQLSGVLVKLRLLPGIR 250
Query: 52 PNQPVRPCLVTRPEDGNVSSGDEN 75
+R C + R G++ + N
Sbjct: 251 HADALRLCHIRR--AGDLCTAGNN 272
>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic
Malate dehydrogenases. MDH is one of the key enzymes in
the citric acid cycle, facilitating both the conversion
of malate to oxaloacetate and replenishing levels of
oxalacetate by reductive carboxylation of pyruvate.
Members of this subfamily are eukaryotic MDHs localized
to the cytoplasm and cytosol. MDHs are part of the
NAD(P)-binding Rossmann fold superfamily, which includes
a wide variety of protein families including the
NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 325
Score = 28.4 bits (64), Expect = 4.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 279 SSKRYPDINHAKIDS 293
SS +YPD+NHA ++
Sbjct: 186 SSTQYPDVNHATVEL 200
>gnl|CDD|220777 pfam10486, PI3K_1B_p101, Phosphoinositide 3-kinase gamma adapter
protein p101 subunit. Class I PI3Ks are dual-specific
lipid and protein kinases involved in numerous
intracellular signaling pathways. Class IB PI3K,
p110gamma, is mainly activated by seven-transmembrane
G-protein-coupled receptors (GPCRs), through its
regulatory subunit p101 and G-protein beta-gamma
subunits.
Length = 856
Score = 28.4 bits (63), Expect = 5.7
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 23 CRYQPQRSPSALRRQFTTPSSLSLLKLQAPNQPVRPCLVTRPEDGNVSSGDENDPPSPTR 82
C Q R P RR + P +L P + RP SGDE+ S R
Sbjct: 445 CGPQLSRIPGRSRRSKSLPQPALGTQLLDLQLPQKVAFKRRP----FLSGDEDSKVSTLR 500
Query: 83 IKKKVIFADDKGL-----SLTQVRLVK-ERPTSPPRWNSQF 117
+ V+F D+ + + +RL + + P + QF
Sbjct: 501 V---VVFGSDRISGKVARAYSNLRLKESQCPLLTRFFKLQF 538
>gnl|CDD|226573 COG4088, COG4088, Predicted nucleotide kinase [Nucleotide transport
and metabolism].
Length = 261
Score = 27.5 bits (61), Expect = 8.0
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 105 ERPTSPPRWNSQFLALVTQGLNTEIIEPNNDLWEIMFSQPASNYLEFRKRLDEGKVSLEN 164
E P RW+S L + ++TE+I+ + ++ R LD +
Sbjct: 139 EEPNPDRRWDSPLLVIDDSDVSTEVID---FIESVLRLVEKPKERNRRYVLDSSTNKVIV 195
Query: 165 VIVKESENL 173
I + +
Sbjct: 196 RIRQVMKET 204
>gnl|CDD|225524 COG2977, EntD, Phosphopantetheinyl transferase component of
siderophore synthetase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 228
Score = 27.7 bits (62), Expect = 8.1
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 280 SKRYPDINHAKIDSWTEFASWTHL 303
KR+ A+I S T+ L
Sbjct: 172 VKRWLGFEDAQISSDTDRQGSFGL 195
>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase.
Length = 309
Score = 27.4 bits (61), Expect = 8.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 279 SSKRYPDINHAKIDSWTEFASWTHLANDGPY 309
SS +YPD+NHA + + + L D +
Sbjct: 166 SSTQYPDVNHATVKTPSGEKPVRELVADDAW 196
>gnl|CDD|140271 PTZ00244, PTZ00244, serine/threonine-protein phosphatase PP1;
Provisional.
Length = 294
Score = 27.6 bits (61), Expect = 9.3
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 12/73 (16%)
Query: 144 PASNYLEFRKRLDEGKVSLENVIV--------KESENLVTGTVKVRNLS----FKKEVII 191
P SNYL +D GK S+E + + E+ L+ G + +++ F +V
Sbjct: 78 PYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKR 137
Query: 192 RYSTNNWTTFTDV 204
RY+ + FTDV
Sbjct: 138 RYNIKLFKAFTDV 150
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.401
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,892,075
Number of extensions: 1484256
Number of successful extensions: 1152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1146
Number of HSP's successfully gapped: 24
Length of query: 312
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 215
Effective length of database: 6,635,264
Effective search space: 1426581760
Effective search space used: 1426581760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)