RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7211
(312 letters)
>2eef_A Protein phosphatase 1, regulatory (inhibitor) subunit 3B; CBM_21
domain, carbohydrate binding domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 156
Score = 152 bits (385), Expect = 4e-46
Identities = 53/151 (35%), Positives = 85/151 (56%), Gaps = 15/151 (9%)
Query: 132 PNNDLWEIMFSQPASNYLEFRKRLDEGKVSLENVIVKESENLVTGTVKVRNLSFKKEVII 191
++ + + FSQP+++YL+FR RL V LEN ++ + + GTVKV+NL+F+K V I
Sbjct: 8 AESESFVLDFSQPSADYLDFRNRLQADHVCLENCVL--KDKAIAGTVKVQNLAFEKTVKI 65
Query: 192 RYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAH---QIEFCIAYKTENE 248
R + + W ++TD C YV S DTF+F IS+P+ ++EF + Y+ +
Sbjct: 66 RMTFDTWKSYTDFPCQYVKDTYAGS---DRDTFSFDISLPEKIQSYERMEFAVYYECNGQ 122
Query: 249 EFWDNNNSKNYIIK-------KGIAPPRNSP 272
+WD+N KNY I +G+ P + P
Sbjct: 123 TYWDSNRGKNYRIIRAELKSTQGMTKPHSGP 153
>2djm_A Glucoamylase A; beta sandwich, anti-parallel, strach binding,
carbohydrate binding, sugar binding protein; NMR
{Rhizopus oryzae} PDB: 2v8l_A* 2v8m_A* 2vq4_A
Length = 106
Score = 122 bits (309), Expect = 2e-35
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 159 KVSLENVIVKESENLVTGTVKVRNLSFKKEVIIRYS--TNNWTTFTDVKCAYVPSATPSS 216
V L++ + +G + V+N+++ K+V + Y+ ++NW ++ A S
Sbjct: 8 SVQLDSYNY--DGSTFSGKIYVKNIAYSKKVTVVYADGSDNWNNNGNIIAASFSGPISGS 65
Query: 217 ITIVYDTFAFQISIPKSAHQIEFCIAYKTENEEFWDNNNSKNYIIK 262
Y+ + F S+ EF I Y+ + ++DNNNS NY +
Sbjct: 66 ---NYEYWTFSASVK---GIKEFYIKYEVSGKTYYDNNNSANYQVS 105
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 3e-07
Identities = 44/355 (12%), Positives = 102/355 (28%), Gaps = 106/355 (29%)
Query: 3 TDYEVLLSHSPPIFSQSYFGCRYQPQRSPSALRRQFTTPSSLSLLKLQAPNQPVRPCLVT 62
+Y+ L+S PI + + R PS + R + +L NQ V+
Sbjct: 89 INYKFLMS---PI--------KTEQ-RQPSMMTRMYIEQRD----RLYNDNQVFAKYNVS 132
Query: 63 RPED-GNVSSGDENDPPSPTRIKKKVIFADDKG-----LSLTQVRLVKERPTSPPR--WN 114
R + + P+ V+ G ++L K + + W
Sbjct: 133 RLQPYLKLRQALLELRPAK-----NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW- 186
Query: 115 SQFLALVTQGLNTEIIEPNNDLWEIM---FSQPASNYLEFRKRLDEGKVSLENVIVKESE 171
L L ++E L + ++ + + + R+ + L ++ +
Sbjct: 187 ---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP- 242
Query: 172 NLVTGTVKVRNLSFKKEVIIR--YSTNNWTTFTDVKC------------AYVPSATPSSI 217
L +++ + W F ++ C ++ +AT + I
Sbjct: 243 -------YENCL-----LVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 218 TIVYDTFAF------QI----------SIPKSAHQIE-FCI----AYKTENEEFWDN--- 253
++ + + + +P+ + + WDN
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 254 --NNSKNYIIKKGIAPPRNSPILDDTISSKRYPDI----NHAKIDS------WTE 296
+ II+ + +L+ K + + A I + W +
Sbjct: 350 VNCDKLTTIIESSLN------VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Score = 36.8 bits (84), Expect = 0.010
Identities = 60/374 (16%), Positives = 105/374 (28%), Gaps = 111/374 (29%)
Query: 8 LLSHSPPIFSQSYFGCRYQPQRSPSA---LRRQFTT---PSSLSLLK-------LQAPNQ 54
LL P ++ R S LRR + + L +L A N
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 55 PVRPCLVTRPEDGNVSSGDENDPPSPTRI---KKKVIFADDKGLSLTQVRLVKERPTSPP 111
+ L TR V+ D + T I + D+ SL ++ + RP P
Sbjct: 265 SCKILLTTR--FKQVT--DFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLP 319
Query: 112 R----WNSQFLALVTQGLNTEIIEPNNDLWEIMFSQPASNYLEFRKRLDEGKVSLENVIV 167
R N + L+++ E I W+ N+ K ++ K L +I
Sbjct: 320 REVLTTNPRRLSIIA-----ESIRDGLATWD--------NW----KHVNCDK--LTTIIE 360
Query: 168 KESENLVTGTVKVRNLSFKKEVIIRYSTN--------NWT--TFTDV---------KCAY 208
L + F + + S + W +DV
Sbjct: 361 SSLNVLEPAEYRKM---FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 209 VPSATPSSITI--VYDTFAFQISIPKSAHQ--IE-------FC----------------I 241
S+I+I +Y ++ + H+ ++ F I
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 242 AY---KTENEE--------FWDNNNSKNYIIKKGIAPPRNSPILDDTISSKRYPD----- 285
+ E+ E F D + I A + IL+ K Y
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 286 --INHAKIDSWTEF 297
+++ +F
Sbjct: 538 DPKYERLVNAILDF 551
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 3e-05
Identities = 48/309 (15%), Positives = 85/309 (27%), Gaps = 102/309 (33%)
Query: 2 PTDYEVLLSHSP---PI-----FSQSYFGCRYQPQRSPSALRRQFTTPSS---------- 43
DY L P P+ + + +P LR +
Sbjct: 227 DKDY---LLSIPISCPLIGVIQLAHYVVTAK-LLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 44 -----------------LSLL-------KLQAPNQPVRPCLVTRPEDGNVSSGDENDPPS 79
+++L PN + P ++ + N PS
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN------EGVPS 336
Query: 80 P-TRIKKKVIFADDKGLSLTQV-RLVKERPTSPPRWNSQFLAL--------VT------Q 123
P I L+ QV V + + P ++L V+
Sbjct: 337 PMLSI---------SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 124 GLNTEI----IEPNNDLWEIMFSQPASNYLEFRKRLDEGKVS-------LENVIVKESEN 172
GLN + D I FS+ L+F R V+ L +++
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERK---LKFSNRFLP--VASPFHSHLLVPASDLINKD 442
Query: 173 LVTGTVKVRNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSI-TIVYDTFAFQISIP 231
LV V + V Y T + +D+ S + + I+ ++ +
Sbjct: 443 LVKNNVSFNAKDIQIPV---YDTFDG---SDL-RVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 232 KSA-HQIEF 239
A H ++F
Sbjct: 496 FKATHILDF 504
Score = 40.8 bits (95), Expect = 5e-04
Identities = 38/249 (15%), Positives = 76/249 (30%), Gaps = 73/249 (29%)
Query: 75 NDPPSPTRIKKKVIFADDKGLSLTQ--VRLVKERPTSPPRWNSQFLALVTQGLNTEIIE- 131
N+P + T + F +KG + + ++ E + + + +
Sbjct: 1667 NNPVNLT-----IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 132 PNNDLWEIMFSQPA---SNYLEFRKRLDEGKV---------SL-E--------NVIVKES 170
L F+QPA F +G + SL E +V+ S
Sbjct: 1722 EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM---S 1778
Query: 171 -ENLVTGTVKVRNLSFKKEVIIRYSTNNWTTFTDVKCAYVPSATPSSITIVYDTFAFQIS 229
E+LV V R ++ + V R ++ + P + + A Q
Sbjct: 1779 IESLVE-VVFYRGMTMQVAV-PRDELGR----SNYGMIAI---NPGRVAASFSQEALQYV 1829
Query: 230 IPKSAHQI-EFC-IAYKTENEEFWDNNNSKN--YII---KKGIAPPRNSPILDDTISSKR 282
+ + + I N N +N Y+ + + DT+++
Sbjct: 1830 VERVGKRTGWLVEIV----------NYNVENQQYVAAGDLRAL----------DTVTNV- 1868
Query: 283 YPDINHAKI 291
+N K+
Sbjct: 1869 ---LNFIKL 1874
Score = 33.9 bits (77), Expect = 0.086
Identities = 8/66 (12%), Positives = 20/66 (30%), Gaps = 16/66 (24%)
Query: 216 SITIVYDTFAFQISIPKSAHQIEFCIAYKTENEEFWDNNNSKNYIIKKGIAPPRNSPILD 275
+T+ + + + +P ++ E+F K + P D
Sbjct: 8 PLTLSHGSLEHVLLVPTASF-----FIASQLQEQF-----------NKILPEPTEGFAAD 51
Query: 276 DTISSK 281
D ++
Sbjct: 52 DEPTTP 57
Score = 30.4 bits (68), Expect = 1.0
Identities = 23/141 (16%), Positives = 39/141 (27%), Gaps = 60/141 (42%)
Query: 9 LSHSPPIFSQSYFGCRYQPQRSPSALRRQFTTPSSLSLLKLQAPNQPVRPCLVTRPEDGN 68
L H + + S+F S L+ QF L
Sbjct: 16 LEHVLLVPTASFFIA--------SQLQEQFN--KIL------------------------ 41
Query: 69 VSSGDENDPPSPTRIKKKVIFADDKGLSLTQVRLVKERPTSPPRWNSQFLALVTQGLNTE 128
P PT FA D + PT+P +FL V+ +
Sbjct: 42 ---------PEPTEG-----FAAD------------DEPTTPAELVGKFLGYVSSLVEPS 75
Query: 129 IIEPNNDLWEIMFSQPASNYL 149
+ + + + ++ + YL
Sbjct: 76 KVGQFDQVLNLCLTEFENCYL 96
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus
polymyxa} PDB: 2lab_A
Length = 104
Score = 35.1 bits (80), Expect = 0.005
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 226 FQISIPK-SAHQIEFCIAYKTENEEFWDNNNSKNYIIKKGI 265
+I++ SA Q+E + WD+NN+KNY G
Sbjct: 46 AKITVDIGSASQLEAAF---NDGNNNWDSNNTKNYSFSTGT 83
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding,
carbohydrate binding, glycoside hydrolase, amylose,
amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB:
2c3v_B* 2c3w_A* 2c3x_A*
Length = 102
Score = 31.7 bits (71), Expect = 0.065
Identities = 17/81 (20%), Positives = 23/81 (28%), Gaps = 15/81 (18%)
Query: 187 KEVIIRYSTNN--WTTFTDVKCAYVPSATPSSITIVYDTFAFQISIPKSAHQIEFCIAYK 244
I YS N WTT V +TI + Q+
Sbjct: 21 THPHIHYSLNQGAWTTLPGVPLTKSEXEGXVKVTIEA----------EEGSQLRAAF--- 67
Query: 245 TENEEFWDNNNSKNYIIKKGI 265
WDNN ++Y G+
Sbjct: 68 NNGSGQWDNNQGRDYDFSSGV 88
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 33.6 bits (77), Expect = 0.074
Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 39/163 (23%)
Query: 77 PPSPTRIKKKVIFADDKGLSLTQV--RLVKERPTSPPRWNSQFLALVTQGLNTEIIEPN- 133
P R+ K +F +D + + L+KE S L ++T+G + E N
Sbjct: 23 FPPSHRLTAKEVFDNDGKPRVDILKAHLMKEGRLE----ESVALRIITEGASILRQEKNL 78
Query: 134 -----------------NDLWEIMF---SQPASNYLEFRKRLDEGKVSLENVI------V 167
DL ++ S + YL +D G S+E V+ +
Sbjct: 79 LDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKI 138
Query: 168 KESEN--LVTGTVKVRNLS----FKKEVIIRYSTNNWTTFTDV 204
+ L+ G + R+L+ FK+E I+YS + D
Sbjct: 139 LYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDA 181
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 30.2 bits (69), Expect = 0.82
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 185 FKKEVIIRYSTNNWTTFTDV 204
F E RY+ W TFTD
Sbjct: 135 FYDECKRRYNIKLWKTFTDC 154
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 30.3 bits (69), Expect = 0.84
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 18/76 (23%)
Query: 144 PASNYL---EFRKRLDEGKVSLENVI------VKESEN--LVTGTVKVRNLS----FKKE 188
P YL +F +D G S E + + N L G + N++ F+ E
Sbjct: 91 PKHTYLFNGDF---VDRGSWSCEVALLFYCLKILHPNNFFLNRGNHESDNMNKIYGFEDE 147
Query: 189 VIIRYSTNNWTTFTDV 204
+YS + F
Sbjct: 148 CKYKYSQRIFNMFAQS 163
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 29.9 bits (68), Expect = 0.98
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 185 FKKEVIIRYSTNNWTTFTDV 204
F E RY+ W TFTD
Sbjct: 136 FYDECKRRYNIKLWKTFTDC 155
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 29.9 bits (68), Expect = 1.0
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 185 FKKEVIIRYSTNNWTTFTDV 204
F+ EV +Y+ + F++V
Sbjct: 140 FEGEVKAKYTAQMYELFSEV 159
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 29.5 bits (67), Expect = 1.3
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 185 FKKEVIIRYSTNNWTTFTDV 204
FK+E I+YS + D
Sbjct: 149 FKQECKIKYSERVYDACMDA 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 29.7 bits (67), Expect = 1.5
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 185 FKKEVIIRYSTNNWTTFTDVKCAYVPSAT 213
F+ EV +Y+ + F++V ++P A
Sbjct: 293 FEGEVKAKYTAQMYELFSEVFE-WLPLAQ 320
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 28.5 bits (63), Expect = 1.7
Identities = 14/68 (20%), Positives = 24/68 (35%)
Query: 63 RPEDGNVSSGDENDPPSPTRIKKKVIFADDKGLSLTQVRLVKERPTSPPRWNSQFLALVT 122
R N G + + S ++++PT P W+S F A +
Sbjct: 13 RIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN 72
Query: 123 QGLNTEII 130
+G +II
Sbjct: 73 KGRVMQII 80
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain,
beta barrel, transport prote; 2.71A {Escherichia coli}
Length = 277
Score = 28.3 bits (64), Expect = 3.2
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 21/62 (33%)
Query: 141 FSQPASNYLEFRKRLDEGKVSLENVIVKE------------------SENLV---TGTVK 179
+Q +++ + ++ L G + EN K S+ V TG++
Sbjct: 173 VTQSSNDMMRLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSIT 232
Query: 180 VR 181
+R
Sbjct: 233 LR 234
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP
pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP:
c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Length = 455
Score = 28.3 bits (64), Expect = 3.6
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 10/67 (14%)
Query: 161 SLENVIVKESENLVTGTVKVRNLSFKKEVII---RYSTN-----NWTTFTDVKCAYVPSA 212
L + + + + +TG V + L + S N T + P
Sbjct: 342 MLRDSLQRWVASQITGEVTLE-L-RRGNDYSILNTVSENLTYKPERLTMEKGDSVFSPDD 399
Query: 213 TPSSITI 219
+T+
Sbjct: 400 RIGQLTM 406
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.8 bits (61), Expect = 3.7
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 8/49 (16%)
Query: 221 YDTFAFQI-----SIPKSAHQIEFCIAYKTENEE--FWDNNNSKNYIIK 262
++ A ++ ++ N++ FWD SK Y ++
Sbjct: 171 FENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWD-AISKLYYVQ 218
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 7.3
Identities = 6/16 (37%), Positives = 8/16 (50%), Gaps = 2/16 (12%)
Query: 45 SLLKLQAPNQPVRPCL 60
+ LKL A + P L
Sbjct: 27 ASLKLYADDSA--PAL 40
>1wbf_A Protein (agglutinin); lectin (agglutinin), legume lectin, protein
crystallography, group specificity, saccharide free
form; HET: NAG; 2.30A {Psophocarpus tetragonolobus}
SCOP: b.29.1.1 PDB: 2d3s_A* 2dtw_A* 1wbl_A* 2dty_A*
2du0_A* 2du1_A* 2e51_A* 2e53_A* 2zmk_A* 2zml_A* 2zmn_A*
2e7t_A* 2e7q_A*
Length = 242
Score = 26.7 bits (58), Expect = 9.1
Identities = 14/80 (17%), Positives = 25/80 (31%)
Query: 223 TFAFQISIPKSAHQIEFCIAYKTENEEFWDNNNSKNYIIKKGIAPPRNSPILDDTISSKR 282
F+F I P + + + I ++P + DT +
Sbjct: 72 RFSFSIRQPFPRPHPADGLVFFIAPPNTQTGEGGGYFGIYNPLSPYPFVAVEFDTFRNTW 131
Query: 283 YPDINHAKIDSWTEFASWTH 302
P I H ID + ++ T
Sbjct: 132 DPQIPHIGIDVNSVISTKTV 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.401
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,691,975
Number of extensions: 264517
Number of successful extensions: 469
Number of sequences better than 10.0: 1
Number of HSP's gapped: 463
Number of HSP's successfully gapped: 28
Length of query: 312
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 219
Effective length of database: 4,105,140
Effective search space: 899025660
Effective search space used: 899025660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.2 bits)