Query psy7212
Match_columns 75
No_of_seqs 191 out of 1091
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 21:00:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02824 hydrolase, alpha/beta 99.4 1.2E-12 2.6E-17 78.7 6.5 54 7-65 84-137 (294)
2 PF02230 Abhydrolase_2: Phosph 99.4 8.9E-13 1.9E-17 76.8 5.4 61 11-71 86-146 (216)
3 KOG4409|consensus 99.4 9.4E-13 2E-17 81.2 5.5 42 27-68 157-198 (365)
4 TIGR02240 PHA_depoly_arom poly 99.4 2.1E-12 4.5E-17 77.2 5.6 55 7-66 73-127 (276)
5 PLN02965 Probable pheophorbida 99.4 3.9E-12 8.5E-17 75.3 6.6 54 7-65 53-107 (255)
6 PF12697 Abhydrolase_6: Alpha/ 99.4 4.7E-12 1E-16 71.8 6.7 55 7-66 48-102 (228)
7 PF00561 Abhydrolase_1: alpha/ 99.3 3.4E-12 7.4E-17 73.3 5.6 51 9-64 28-78 (230)
8 PRK03592 haloalkane dehalogena 99.3 6.1E-12 1.3E-16 75.7 6.5 54 7-65 75-128 (295)
9 PLN02298 hydrolase, alpha/beta 99.3 1.5E-11 3.3E-16 75.1 7.5 62 7-68 110-172 (330)
10 PRK00870 haloalkane dehalogena 99.3 1.4E-11 3E-16 74.5 6.5 54 8-66 98-151 (302)
11 PRK10749 lysophospholipase L2; 99.3 2.7E-11 5.9E-16 74.4 7.7 59 7-66 109-167 (330)
12 PLN02385 hydrolase; alpha/beta 99.3 1.8E-11 3.9E-16 75.5 6.7 61 7-67 138-199 (349)
13 PRK08775 homoserine O-acetyltr 99.3 9.7E-12 2.1E-16 76.6 5.5 53 8-65 120-173 (343)
14 PRK11126 2-succinyl-6-hydroxy- 99.3 2.9E-11 6.4E-16 70.6 7.1 55 7-66 48-103 (242)
15 PRK10673 acyl-CoA esterase; Pr 99.3 1.7E-11 3.8E-16 71.9 6.0 53 7-64 63-115 (255)
16 TIGR01392 homoserO_Ac_trn homo 99.3 1.9E-11 4E-16 75.6 6.3 54 8-66 109-163 (351)
17 TIGR03343 biphenyl_bphD 2-hydr 99.3 2.1E-11 4.5E-16 72.6 5.9 49 11-64 87-135 (282)
18 COG2267 PldB Lysophospholipase 99.2 4.5E-11 9.8E-16 73.0 6.8 60 8-68 86-145 (298)
19 cd00707 Pancreat_lipase_like P 99.2 5.9E-11 1.3E-15 71.7 6.8 60 11-70 92-152 (275)
20 TIGR03230 lipo_lipase lipoprot 99.2 1.1E-10 2.5E-15 74.4 8.1 62 9-70 97-159 (442)
21 PRK06765 homoserine O-acetyltr 99.2 5.7E-11 1.2E-15 74.8 6.4 55 7-66 142-197 (389)
22 TIGR03056 bchO_mg_che_rel puta 99.2 9.4E-11 2E-15 69.2 6.8 54 7-65 77-130 (278)
23 TIGR01250 pro_imino_pep_2 prol 99.2 7E-11 1.5E-15 69.4 6.1 53 8-65 79-131 (288)
24 TIGR03611 RutD pyrimidine util 99.2 4E-11 8.6E-16 69.7 4.9 55 7-66 62-116 (257)
25 PLN02578 hydrolase 99.2 7.1E-11 1.5E-15 73.2 6.2 52 9-65 136-187 (354)
26 PRK00175 metX homoserine O-ace 99.2 8.1E-11 1.8E-15 73.6 6.4 55 7-66 128-183 (379)
27 PRK06489 hypothetical protein; 99.2 8E-11 1.7E-15 73.0 5.8 38 27-64 150-188 (360)
28 TIGR03695 menH_SHCHC 2-succiny 99.2 1.2E-10 2.6E-15 66.9 6.1 40 27-66 67-106 (251)
29 TIGR02427 protocat_pcaD 3-oxoa 99.2 3.2E-11 7E-16 69.4 3.6 53 8-65 62-114 (251)
30 PRK07581 hypothetical protein; 99.2 7.9E-11 1.7E-15 72.3 5.3 51 11-66 105-160 (339)
31 PLN02211 methyl indole-3-aceta 99.2 1.3E-10 2.9E-15 69.9 6.1 54 8-66 69-123 (273)
32 PHA02857 monoglyceride lipase; 99.2 3.4E-10 7.4E-15 67.4 7.8 54 12-66 80-133 (276)
33 TIGR01840 esterase_phb esteras 99.1 2.3E-10 5E-15 66.5 6.8 56 11-66 75-131 (212)
34 PRK03204 haloalkane dehalogena 99.1 1.2E-10 2.7E-15 70.2 5.8 52 9-65 85-136 (286)
35 PLN03087 BODYGUARD 1 domain co 99.1 1.8E-10 3.9E-15 74.2 6.6 51 10-65 258-309 (481)
36 PLN02894 hydrolase, alpha/beta 99.1 2.6E-10 5.6E-15 72.0 7.2 39 27-65 173-211 (402)
37 PLN02679 hydrolase, alpha/beta 99.1 1.5E-10 3.2E-15 72.0 5.8 53 8-65 138-191 (360)
38 KOG1455|consensus 99.1 3E-10 6.4E-15 69.2 6.8 68 5-72 103-171 (313)
39 TIGR01249 pro_imino_pep_1 prol 99.1 1.5E-10 3.3E-15 70.3 5.3 52 9-65 79-130 (306)
40 COG0400 Predicted esterase [Ge 99.1 3.3E-10 7.1E-15 66.2 5.8 60 11-70 79-139 (207)
41 PF00326 Peptidase_S9: Prolyl 99.1 3.7E-10 7.9E-15 65.4 5.9 61 10-70 43-104 (213)
42 TIGR03101 hydr2_PEP hydrolase, 99.1 7.8E-10 1.7E-14 66.7 7.0 56 9-66 80-135 (266)
43 PRK10349 carboxylesterase BioH 99.1 5.3E-10 1.1E-14 66.0 6.1 38 28-65 72-109 (256)
44 PLN03084 alpha/beta hydrolase 99.0 8.7E-10 1.9E-14 69.4 6.2 55 7-66 179-233 (383)
45 PRK11460 putative hydrolase; P 99.0 1.5E-09 3.2E-14 64.2 6.5 52 15-66 87-139 (232)
46 TIGR01836 PHA_synth_III_C poly 99.0 1.5E-09 3.3E-14 67.2 6.8 56 13-69 120-175 (350)
47 PRK14875 acetoin dehydrogenase 99.0 1.2E-09 2.5E-14 67.4 6.2 54 7-65 179-232 (371)
48 TIGR02821 fghA_ester_D S-formy 99.0 2.8E-09 6E-14 64.2 7.4 42 26-67 134-175 (275)
49 PLN02442 S-formylglutathione h 99.0 2.4E-09 5.2E-14 64.8 7.2 56 11-67 125-180 (283)
50 KOG4178|consensus 99.0 1.3E-09 2.7E-14 67.0 5.3 55 7-66 95-149 (322)
51 TIGR01738 bioH putative pimelo 99.0 2.4E-09 5.1E-14 61.6 5.9 37 30-66 65-101 (245)
52 PRK10439 enterobactin/ferric e 99.0 1.8E-09 3.8E-14 68.6 5.4 55 11-65 269-323 (411)
53 PLN02980 2-oxoglutarate decarb 98.9 3.3E-09 7.1E-14 76.0 6.7 53 8-65 1428-1480(1655)
54 PLN02511 hydrolase 98.9 6.3E-09 1.4E-13 65.5 7.3 57 9-66 153-211 (388)
55 PF00756 Esterase: Putative es 98.9 2.8E-09 6E-14 62.9 5.3 55 11-67 98-152 (251)
56 PRK11071 esterase YqiA; Provis 98.9 8.1E-09 1.7E-13 59.5 6.4 48 11-66 47-94 (190)
57 TIGR01607 PST-A Plasmodium sub 98.9 5.4E-09 1.2E-13 64.6 5.4 60 7-66 100-186 (332)
58 PLN02733 phosphatidylcholine-s 98.9 1E-08 2.2E-13 65.6 6.7 56 10-66 143-202 (440)
59 PRK05077 frsA fermentation/res 98.9 1.5E-08 3.2E-13 64.4 7.2 51 16-66 250-301 (414)
60 TIGR03100 hydr1_PEP hydrolase, 98.9 2.3E-08 5E-13 60.2 7.7 58 8-66 78-135 (274)
61 PF07819 PGAP1: PGAP1-like pro 98.9 1.1E-08 2.4E-13 60.5 6.0 56 11-66 62-124 (225)
62 PF10503 Esterase_phd: Esteras 98.8 2.1E-08 4.6E-13 59.2 6.9 55 11-65 77-132 (220)
63 COG0596 MhpC Predicted hydrola 98.8 1.6E-08 3.5E-13 57.6 6.1 50 12-66 75-124 (282)
64 PRK10985 putative hydrolase; P 98.8 2.6E-08 5.6E-13 61.2 7.3 56 11-67 113-170 (324)
65 PLN02652 hydrolase; alpha/beta 98.8 2.8E-08 6.2E-13 62.8 7.3 60 7-68 186-248 (395)
66 PF12695 Abhydrolase_5: Alpha/ 98.8 2.9E-08 6.3E-13 53.8 6.5 52 12-64 43-94 (145)
67 KOG1454|consensus 98.8 1.6E-08 3.5E-13 62.6 5.7 39 28-66 126-167 (326)
68 PF07859 Abhydrolase_3: alpha/ 98.8 1.6E-08 3.5E-13 58.3 4.8 65 3-67 40-112 (211)
69 KOG1552|consensus 98.8 3.4E-08 7.4E-13 59.2 6.0 62 6-70 106-168 (258)
70 PF00151 Lipase: Lipase; Inte 98.8 7.2E-08 1.6E-12 59.9 7.5 61 11-71 130-193 (331)
71 PRK10566 esterase; Provisional 98.7 5.5E-08 1.2E-12 57.2 6.6 50 12-61 88-138 (249)
72 PF06028 DUF915: Alpha/beta hy 98.7 5.9E-08 1.3E-12 58.4 6.5 61 8-69 82-147 (255)
73 PF10230 DUF2305: Uncharacteri 98.7 1.2E-07 2.5E-12 57.3 7.1 58 10-67 63-124 (266)
74 PF00975 Thioesterase: Thioest 98.7 1.5E-07 3.3E-12 54.7 7.0 40 28-67 64-106 (229)
75 PRK13604 luxD acyl transferase 98.6 1.5E-07 3.3E-12 57.9 6.5 55 10-68 90-144 (307)
76 TIGR00976 /NonD putative hydro 98.6 1.4E-07 2.9E-12 61.7 6.5 60 9-68 76-135 (550)
77 PF02450 LCAT: Lecithin:choles 98.6 1.5E-07 3.3E-12 59.4 6.3 56 9-66 100-161 (389)
78 KOG2564|consensus 98.6 6.9E-08 1.5E-12 58.9 4.3 53 7-62 125-179 (343)
79 COG1647 Esterase/lipase [Gener 98.6 2.6E-07 5.7E-12 54.6 6.5 54 12-69 69-122 (243)
80 PRK10162 acetyl esterase; Prov 98.6 3.1E-07 6.6E-12 56.5 7.1 62 7-68 127-198 (318)
81 PF05728 UPF0227: Uncharacteri 98.6 8E-08 1.7E-12 55.5 4.2 41 27-70 56-96 (187)
82 COG2819 Predicted hydrolase of 98.6 1.5E-07 3.2E-12 56.8 5.3 46 24-69 131-176 (264)
83 TIGR01838 PHA_synth_I poly(R)- 98.6 2.5E-07 5.4E-12 60.6 6.7 56 13-69 246-306 (532)
84 cd00741 Lipase Lipase. Lipase 98.6 3.6E-07 7.8E-12 50.7 6.2 57 12-69 11-71 (153)
85 COG2021 MET2 Homoserine acetyl 98.6 9.6E-08 2.1E-12 59.7 3.8 41 27-67 143-184 (368)
86 TIGR01839 PHA_synth_II poly(R) 98.5 5.2E-07 1.1E-11 59.3 7.0 60 9-69 268-332 (560)
87 PF06821 Ser_hydrolase: Serine 98.5 2.1E-07 4.5E-12 53.0 4.3 37 30-66 55-92 (171)
88 PLN00021 chlorophyllase 98.5 7.5E-07 1.6E-11 55.0 7.0 40 27-66 123-167 (313)
89 PF08840 BAAT_C: BAAT / Acyl-C 98.5 7.2E-07 1.6E-11 52.3 6.5 55 13-68 4-59 (213)
90 PRK07868 acyl-CoA synthetase; 98.5 4.1E-07 8.8E-12 63.0 6.2 60 9-68 119-180 (994)
91 KOG2112|consensus 98.5 5.2E-07 1.1E-11 52.7 5.3 58 9-66 72-129 (206)
92 COG4099 Predicted peptidase [G 98.4 1E-06 2.3E-11 54.3 6.1 56 11-66 248-305 (387)
93 PF06500 DUF1100: Alpha/beta h 98.4 7.5E-07 1.6E-11 56.7 4.8 52 15-66 245-297 (411)
94 COG3208 GrsT Predicted thioest 98.4 8.3E-07 1.8E-11 53.0 4.6 56 11-66 52-113 (244)
95 COG3509 LpqC Poly(3-hydroxybut 98.4 2E-06 4.4E-11 52.7 6.3 57 10-66 123-180 (312)
96 COG0627 Predicted esterase [Ge 98.4 8.1E-07 1.8E-11 55.0 4.5 60 10-69 132-191 (316)
97 PF01764 Lipase_3: Lipase (cla 98.3 1.8E-06 3.9E-11 47.0 4.9 23 28-50 62-84 (140)
98 PF06057 VirJ: Bacterial virul 98.3 3.1E-06 6.6E-11 49.1 5.7 58 7-65 46-107 (192)
99 PRK05855 short chain dehydroge 98.3 1.1E-06 2.4E-11 56.9 4.3 52 7-63 75-129 (582)
100 COG0412 Dienelactone hydrolase 98.3 6.4E-06 1.4E-10 49.1 7.0 57 9-66 90-147 (236)
101 KOG2382|consensus 98.3 1.9E-06 4.1E-11 53.2 4.9 57 8-65 102-159 (315)
102 COG4814 Uncharacterized protei 98.3 5.3E-06 1.2E-10 50.1 6.4 59 7-66 114-177 (288)
103 COG2382 Fes Enterochelin ester 98.3 6.6E-07 1.4E-11 54.8 2.4 57 10-66 157-213 (299)
104 COG0657 Aes Esterase/lipase [L 98.2 7.3E-06 1.6E-10 50.1 6.9 66 4-69 122-195 (312)
105 PLN02872 triacylglycerol lipas 98.2 9.8E-07 2.1E-11 56.0 2.4 52 13-67 145-199 (395)
106 KOG2931|consensus 98.2 5E-06 1.1E-10 51.1 5.3 55 6-65 103-157 (326)
107 PF10340 DUF2424: Protein of u 98.2 1.2E-05 2.6E-10 50.9 7.1 63 5-68 171-238 (374)
108 TIGR01849 PHB_depoly_PhaZ poly 98.2 6.6E-06 1.4E-10 52.5 5.8 56 9-70 153-213 (406)
109 PF08538 DUF1749: Protein of u 98.2 1.2E-05 2.6E-10 49.6 6.6 60 9-68 84-151 (303)
110 PF01738 DLH: Dienelactone hyd 98.2 5.5E-06 1.2E-10 48.2 5.0 53 10-63 77-130 (218)
111 PF11187 DUF2974: Protein of u 98.2 9.2E-06 2E-10 48.2 5.9 36 30-65 84-123 (224)
112 PF03096 Ndr: Ndr family; Int 98.2 3E-06 6.5E-11 51.7 3.8 55 6-65 80-134 (283)
113 COG1075 LipA Predicted acetylt 98.2 6E-06 1.3E-10 51.4 5.1 55 11-66 109-165 (336)
114 PF11288 DUF3089: Protein of u 98.1 9.8E-06 2.1E-10 47.6 5.4 40 12-51 77-116 (207)
115 COG3319 Thioesterase domains o 98.1 1.8E-05 4E-10 47.8 6.5 39 28-66 63-104 (257)
116 KOG4391|consensus 98.1 7.2E-07 1.6E-11 53.0 0.5 63 6-68 124-187 (300)
117 KOG1838|consensus 98.1 2.1E-05 4.6E-10 50.1 6.9 63 2-65 171-236 (409)
118 PRK04940 hypothetical protein; 98.1 4E-06 8.7E-11 48.2 3.2 37 30-69 60-96 (180)
119 cd00519 Lipase_3 Lipase (class 98.1 9.4E-06 2E-10 47.7 4.5 24 27-50 125-148 (229)
120 PF03403 PAF-AH_p_II: Platelet 98.1 3.9E-06 8.5E-11 53.1 2.9 38 28-66 226-263 (379)
121 COG3545 Predicted esterase of 98.1 4.2E-05 9.1E-10 43.9 6.8 55 8-65 40-94 (181)
122 PLN02633 palmitoyl protein thi 98.0 3.7E-05 8E-10 47.6 6.5 53 12-65 76-131 (314)
123 PLN02606 palmitoyl-protein thi 98.0 4.3E-05 9.4E-10 47.2 6.5 54 12-66 77-133 (306)
124 PRK10115 protease 2; Provision 98.0 2.2E-05 4.9E-10 52.9 5.6 60 10-69 503-563 (686)
125 COG2945 Predicted hydrolase of 98.0 3.3E-05 7.1E-10 45.0 5.4 60 6-66 79-138 (210)
126 PF05448 AXE1: Acetyl xylan es 98.0 2.6E-05 5.6E-10 48.4 5.2 53 12-65 156-209 (320)
127 PF01674 Lipase_2: Lipase (cla 98.0 4.3E-05 9.2E-10 45.3 5.9 38 12-51 59-96 (219)
128 KOG3724|consensus 98.0 9.1E-06 2E-10 55.4 3.3 37 29-65 181-220 (973)
129 PF06259 Abhydrolase_8: Alpha/ 97.9 8.1E-05 1.8E-09 42.8 6.7 55 11-65 90-144 (177)
130 PF12740 Chlorophyllase2: Chlo 97.9 2.7E-05 5.8E-10 47.2 4.9 38 28-65 89-131 (259)
131 PF11339 DUF3141: Protein of u 97.9 6.4E-05 1.4E-09 49.4 6.8 67 3-69 113-179 (581)
132 PRK10252 entF enterobactin syn 97.9 5.9E-05 1.3E-09 53.2 7.1 55 7-65 1114-1171(1296)
133 PF05057 DUF676: Putative seri 97.9 3.8E-05 8.2E-10 45.2 5.3 20 30-49 78-97 (217)
134 PF01083 Cutinase: Cutinase; 97.9 6E-05 1.3E-09 43.3 5.8 54 12-66 64-123 (179)
135 PLN00413 triacylglycerol lipas 97.9 6.4E-05 1.4E-09 48.8 6.3 23 27-49 281-303 (479)
136 KOG1553|consensus 97.9 4.8E-05 1E-09 48.2 5.5 51 14-65 294-345 (517)
137 COG1506 DAP2 Dipeptidyl aminop 97.9 3.6E-05 7.8E-10 51.3 5.2 55 10-65 452-507 (620)
138 PF05577 Peptidase_S28: Serine 97.9 0.00012 2.7E-09 46.8 7.2 62 8-69 89-152 (434)
139 PLN02162 triacylglycerol lipas 97.9 6.9E-05 1.5E-09 48.6 6.0 23 27-49 275-297 (475)
140 PF05990 DUF900: Alpha/beta hy 97.9 8.5E-05 1.8E-09 44.2 6.0 57 10-67 74-139 (233)
141 KOG2984|consensus 97.9 3.3E-06 7.2E-11 49.8 0.1 51 12-67 101-151 (277)
142 smart00824 PKS_TE Thioesterase 97.9 0.00018 3.9E-09 40.7 7.2 39 28-66 62-103 (212)
143 PLN02517 phosphatidylcholine-s 97.8 3.6E-05 7.7E-10 51.3 4.6 56 9-65 193-263 (642)
144 PF06342 DUF1057: Alpha/beta h 97.8 0.00016 3.5E-09 44.4 7.0 48 12-65 90-137 (297)
145 PLN02454 triacylglycerol lipas 97.8 7.5E-05 1.6E-09 47.9 5.7 39 11-50 208-248 (414)
146 COG3243 PhaC Poly(3-hydroxyalk 97.8 4E-05 8.7E-10 49.1 4.5 58 13-71 165-223 (445)
147 PF12715 Abhydrolase_7: Abhydr 97.8 5.1E-05 1.1E-09 48.2 4.5 46 16-62 211-257 (390)
148 COG3571 Predicted hydrolase of 97.8 0.00011 2.3E-09 42.1 5.4 44 27-70 86-129 (213)
149 KOG2369|consensus 97.8 5.1E-05 1.1E-09 49.1 4.5 57 7-64 160-224 (473)
150 PF09752 DUF2048: Uncharacteri 97.8 0.00018 3.9E-09 45.2 6.7 52 12-65 159-210 (348)
151 KOG1515|consensus 97.8 0.00015 3.3E-09 45.4 6.4 50 22-71 158-213 (336)
152 PTZ00472 serine carboxypeptida 97.8 0.00012 2.5E-09 47.6 6.0 63 8-70 147-221 (462)
153 PF02089 Palm_thioest: Palmito 97.8 0.00018 4E-09 44.0 6.4 36 30-65 80-116 (279)
154 COG4782 Uncharacterized protei 97.8 0.00012 2.6E-09 46.2 5.7 62 4-66 166-235 (377)
155 PLN02571 triacylglycerol lipas 97.7 5.8E-05 1.3E-09 48.3 4.3 20 31-50 227-246 (413)
156 KOG3101|consensus 97.7 2.5E-06 5.3E-11 50.6 -1.7 55 11-66 123-177 (283)
157 PF02129 Peptidase_S15: X-Pro 97.7 0.0002 4.4E-09 43.1 6.2 61 9-69 80-140 (272)
158 COG0429 Predicted hydrolase of 97.7 0.00017 3.6E-09 45.1 5.7 60 7-67 126-187 (345)
159 cd00312 Esterase_lipase Estera 97.7 9.2E-05 2E-09 47.8 4.5 55 13-67 155-215 (493)
160 PF05277 DUF726: Protein of un 97.7 0.00024 5.2E-09 44.7 6.0 42 27-68 217-263 (345)
161 TIGR03502 lipase_Pla1_cef extr 97.6 0.00016 3.6E-09 49.6 5.5 47 5-51 519-576 (792)
162 PLN02310 triacylglycerol lipas 97.6 0.00021 4.6E-09 45.7 5.7 21 30-50 209-229 (405)
163 PF03959 FSH1: Serine hydrolas 97.6 0.00018 3.9E-09 42.1 5.0 37 32-68 104-148 (212)
164 KOG4627|consensus 97.6 2.5E-05 5.3E-10 46.3 1.3 62 7-68 113-175 (270)
165 PLN02408 phospholipase A1 97.6 0.00013 2.7E-09 46.2 4.4 20 31-50 201-220 (365)
166 PLN02934 triacylglycerol lipas 97.6 0.00012 2.6E-09 48.0 4.3 23 27-49 318-340 (515)
167 KOG4667|consensus 97.6 0.00043 9.3E-09 41.4 5.8 63 4-71 81-145 (269)
168 PF12048 DUF3530: Protein of u 97.5 0.00062 1.4E-08 42.2 6.5 42 28-69 191-233 (310)
169 PLN02324 triacylglycerol lipas 97.5 0.00026 5.6E-09 45.5 4.4 21 30-50 215-235 (415)
170 KOG3847|consensus 97.5 5.9E-05 1.3E-09 47.1 1.4 38 27-65 238-275 (399)
171 KOG2624|consensus 97.5 0.00015 3.3E-09 46.4 3.3 55 12-67 144-201 (403)
172 KOG2100|consensus 97.4 0.00036 7.9E-09 47.8 5.0 57 12-68 589-647 (755)
173 KOG2281|consensus 97.4 0.0003 6.5E-09 47.5 4.4 54 8-64 707-761 (867)
174 PLN02753 triacylglycerol lipas 97.4 0.00026 5.6E-09 46.6 3.9 21 29-49 311-331 (531)
175 PLN02802 triacylglycerol lipas 97.4 0.00032 7E-09 46.0 4.3 21 30-50 330-350 (509)
176 COG3150 Predicted esterase [Ge 97.4 0.0004 8.6E-09 39.9 4.0 54 8-69 42-95 (191)
177 PLN03037 lipase class 3 family 97.4 0.0003 6.5E-09 46.3 3.9 21 30-50 318-338 (525)
178 PRK05371 x-prolyl-dipeptidyl a 97.3 0.0014 3.1E-08 45.0 6.9 56 11-66 304-374 (767)
179 PLN02719 triacylglycerol lipas 97.3 0.0005 1.1E-08 45.2 4.2 20 30-49 298-317 (518)
180 KOG4569|consensus 97.3 0.00062 1.3E-08 42.6 4.2 36 10-50 156-191 (336)
181 PF07224 Chlorophyllase: Chlor 97.2 0.00054 1.2E-08 41.9 3.8 40 28-67 118-159 (307)
182 COG1770 PtrB Protease II [Amin 97.2 0.0012 2.7E-08 44.5 5.6 61 10-70 506-567 (682)
183 PLN02761 lipase class 3 family 97.2 0.00064 1.4E-08 44.8 4.2 20 30-49 294-313 (527)
184 COG3458 Acetyl esterase (deace 97.2 0.00036 7.7E-09 42.9 2.7 56 10-66 155-211 (321)
185 PF00135 COesterase: Carboxyle 97.2 0.00096 2.1E-08 43.1 4.8 42 24-65 202-245 (535)
186 PF05677 DUF818: Chlamydia CHL 97.2 0.001 2.3E-08 41.9 4.6 44 8-51 191-236 (365)
187 KOG2541|consensus 97.0 0.0046 9.9E-08 38.0 6.2 36 30-65 92-128 (296)
188 PLN02847 triacylglycerol lipas 97.0 0.0018 3.8E-08 43.5 4.7 24 27-50 248-271 (633)
189 PF11144 DUF2920: Protein of u 96.9 0.0062 1.3E-07 39.2 6.4 37 30-66 184-220 (403)
190 KOG2183|consensus 96.9 0.0017 3.6E-08 42.0 3.6 64 9-72 145-210 (492)
191 PF07519 Tannase: Tannase and 96.9 0.0021 4.5E-08 42.0 4.1 43 25-67 110-152 (474)
192 KOG3975|consensus 96.8 0.011 2.5E-07 36.1 6.7 37 28-64 108-146 (301)
193 COG5153 CVT17 Putative lipase 96.6 0.007 1.5E-07 37.8 5.0 26 27-52 273-298 (425)
194 KOG4540|consensus 96.6 0.007 1.5E-07 37.8 5.0 26 27-52 273-298 (425)
195 KOG4840|consensus 96.6 0.0018 3.9E-08 39.0 2.2 58 8-66 86-145 (299)
196 COG4188 Predicted dienelactone 96.5 0.0043 9.4E-08 39.4 3.7 43 10-52 131-181 (365)
197 COG4947 Uncharacterized protei 96.4 0.0026 5.7E-08 36.9 1.9 42 26-68 98-139 (227)
198 KOG2029|consensus 96.4 0.02 4.4E-07 38.7 6.1 55 10-64 505-571 (697)
199 PF08237 PE-PPE: PE-PPE domain 96.3 0.025 5.5E-07 33.7 5.7 24 28-51 46-69 (225)
200 KOG2182|consensus 96.3 0.0071 1.5E-07 39.8 3.6 61 9-69 149-211 (514)
201 KOG2385|consensus 96.2 0.019 4.2E-07 38.2 5.4 49 20-68 437-490 (633)
202 PF00450 Peptidase_S10: Serine 96.2 0.029 6.2E-07 35.4 6.0 61 7-67 111-183 (415)
203 KOG2237|consensus 96.2 0.0066 1.4E-07 41.2 3.2 57 12-68 530-587 (712)
204 COG3946 VirJ Type IV secretory 96.1 0.012 2.7E-07 38.0 4.2 46 6-52 303-348 (456)
205 COG2272 PnbA Carboxylesterase 95.8 0.007 1.5E-07 39.8 2.2 42 24-66 174-218 (491)
206 KOG3043|consensus 95.5 0.0095 2.1E-07 35.7 1.7 55 9-65 100-154 (242)
207 PF04301 DUF452: Protein of un 95.5 0.047 1E-06 32.5 4.6 38 29-68 56-94 (213)
208 PF03583 LIP: Secretory lipase 95.4 0.025 5.5E-07 34.8 3.5 39 29-67 70-115 (290)
209 PF07082 DUF1350: Protein of u 95.3 0.1 2.3E-06 31.7 5.8 32 31-62 91-122 (250)
210 KOG3253|consensus 95.1 0.028 6E-07 38.3 3.0 60 9-68 226-289 (784)
211 TIGR03712 acc_sec_asp2 accesso 95.0 0.046 9.9E-07 36.2 3.8 52 10-63 336-388 (511)
212 KOG2551|consensus 95.0 0.028 6.2E-07 33.6 2.6 35 33-67 107-149 (230)
213 COG2936 Predicted acyl esteras 94.8 0.085 1.8E-06 35.5 4.7 57 12-68 106-162 (563)
214 KOG3967|consensus 94.8 0.23 4.9E-06 30.1 6.0 38 28-65 188-227 (297)
215 PF09994 DUF2235: Uncharacteri 94.5 0.17 3.7E-06 31.0 5.3 42 10-51 72-113 (277)
216 COG1505 Serine proteases of th 94.3 0.0072 1.6E-07 40.7 -1.0 63 6-68 475-538 (648)
217 COG4757 Predicted alpha/beta h 94.0 0.07 1.5E-06 32.5 2.8 47 12-61 88-134 (281)
218 PLN02213 sinapoylglucose-malat 93.7 0.24 5.3E-06 30.9 4.9 58 12-69 31-100 (319)
219 KOG1516|consensus 93.4 0.27 6E-06 32.5 5.0 42 24-65 189-232 (545)
220 PLN02209 serine carboxypeptida 93.3 0.19 4E-06 32.9 4.0 58 11-68 146-215 (437)
221 KOG1551|consensus 93.2 0.16 3.4E-06 31.7 3.4 37 27-63 192-228 (371)
222 PLN03016 sinapoylglucose-malat 93.1 0.28 6.1E-06 32.0 4.6 56 13-68 146-213 (433)
223 KOG2565|consensus 92.5 0.26 5.7E-06 32.0 3.8 45 14-60 214-259 (469)
224 KOG4372|consensus 92.5 0.063 1.4E-06 34.7 1.1 21 28-48 148-168 (405)
225 KOG1202|consensus 92.2 0.41 8.9E-06 35.7 4.7 38 28-65 2180-2219(2376)
226 PF05705 DUF829: Eukaryotic pr 92.1 1.5 3.3E-05 25.9 6.9 36 31-66 68-113 (240)
227 KOG1283|consensus 92.0 0.17 3.8E-06 32.2 2.6 63 7-69 97-170 (414)
228 PF03283 PAE: Pectinacetyleste 91.6 1.7 3.8E-05 27.8 6.7 51 13-63 138-193 (361)
229 PF09949 DUF2183: Uncharacteri 90.7 1.5 3.2E-05 23.1 5.9 46 10-60 50-97 (100)
230 COG3673 Uncharacterized conser 89.9 1.3 2.9E-05 28.4 5.0 39 12-50 104-142 (423)
231 cd07224 Pat_like Patatin-like 89.7 1.2 2.6E-05 26.6 4.6 35 18-52 17-51 (233)
232 cd07227 Pat_Fungal_NTE1 Fungal 88.4 1.6 3.4E-05 26.9 4.5 32 18-51 28-59 (269)
233 smart00827 PKS_AT Acyl transfe 88.3 1.2 2.5E-05 27.2 3.9 22 28-49 80-101 (298)
234 TIGR03131 malonate_mdcH malona 88.0 1.3 2.7E-05 27.1 4.0 22 28-49 74-95 (295)
235 PF00698 Acyl_transf_1: Acyl t 87.0 0.7 1.5E-05 28.6 2.5 23 28-50 82-104 (318)
236 COG2939 Carboxypeptidase C (ca 86.3 1.5 3.3E-05 29.3 3.8 55 11-65 175-236 (498)
237 PF14253 AbiH: Bacteriophage a 86.3 0.84 1.8E-05 27.4 2.5 18 28-45 233-250 (270)
238 cd07210 Pat_hypo_W_succinogene 86.2 2.4 5.2E-05 25.2 4.4 22 31-52 29-50 (221)
239 COG0331 FabD (acyl-carrier-pro 86.2 2.3 5.1E-05 26.7 4.5 22 28-49 83-104 (310)
240 PF05576 Peptidase_S37: PS-10 86.2 0.42 9E-06 31.4 1.2 59 7-67 113-171 (448)
241 cd07230 Pat_TGL4-5_like Triacy 85.6 1.6 3.5E-05 28.5 3.7 35 18-54 91-125 (421)
242 TIGR00128 fabD malonyl CoA-acy 85.2 1.9 4.2E-05 26.0 3.7 21 29-49 82-102 (290)
243 cd07209 Pat_hypo_Ecoli_Z1214_l 85.2 3.1 6.8E-05 24.4 4.5 32 19-52 17-48 (215)
244 cd07198 Patatin Patatin-like p 84.5 3.9 8.5E-05 23.0 4.6 23 30-52 26-48 (172)
245 KOG1282|consensus 84.2 5.9 0.00013 26.4 5.7 65 7-71 143-219 (454)
246 cd07205 Pat_PNPLA6_PNPLA7_NTE1 84.2 3.6 7.9E-05 23.1 4.4 21 31-51 29-49 (175)
247 cd07212 Pat_PNPLA9 Patatin-lik 83.1 1.5 3.2E-05 27.5 2.6 20 33-52 35-54 (312)
248 cd07225 Pat_PNPLA6_PNPLA7 Pata 82.8 4 8.8E-05 25.5 4.4 32 18-51 33-64 (306)
249 cd07207 Pat_ExoU_VipD_like Exo 82.1 4.8 0.0001 22.9 4.4 22 31-52 28-49 (194)
250 cd07204 Pat_PNPLA_like Patatin 81.4 5.2 0.00011 24.1 4.4 21 32-52 33-53 (243)
251 cd07208 Pat_hypo_Ecoli_yjju_li 81.0 5.8 0.00012 24.0 4.6 21 32-52 29-49 (266)
252 PRK10279 hypothetical protein; 79.5 5.4 0.00012 25.0 4.2 33 18-52 23-55 (300)
253 COG1752 RssA Predicted esteras 78.5 6.1 0.00013 24.5 4.2 25 28-52 37-61 (306)
254 PF10081 Abhydrolase_9: Alpha/ 78.1 5 0.00011 25.2 3.7 37 29-65 108-147 (289)
255 cd07218 Pat_iPLA2 Calcium-inde 78.0 7.4 0.00016 23.6 4.4 20 33-52 33-52 (245)
256 cd07206 Pat_TGL3-4-5_SDP1 Tria 77.9 6.3 0.00014 24.8 4.1 32 18-51 87-118 (298)
257 cd01819 Patatin_and_cPLA2 Pata 77.7 8.1 0.00018 21.5 4.3 19 30-48 28-46 (155)
258 PLN02752 [acyl-carrier protein 77.4 5.8 0.00013 25.0 3.9 18 32-49 126-143 (343)
259 TIGR02816 pfaB_fam PfaB family 75.6 5.9 0.00013 26.9 3.8 25 27-51 262-286 (538)
260 COG3887 Predicted signaling pr 75.4 17 0.00037 25.4 5.8 48 12-63 323-376 (655)
261 COG2830 Uncharacterized protei 75.2 3.6 7.7E-05 24.0 2.3 38 30-69 57-95 (214)
262 KOG4389|consensus 74.3 3 6.5E-05 28.3 2.1 51 18-68 205-258 (601)
263 PRK02399 hypothetical protein; 73.9 20 0.00044 23.7 5.7 51 11-62 79-129 (406)
264 cd07228 Pat_NTE_like_bacteria 73.4 14 0.0003 20.9 4.5 22 31-52 29-50 (175)
265 PF01734 Patatin: Patatin-like 72.7 5.5 0.00012 21.9 2.8 21 31-51 28-48 (204)
266 cd07232 Pat_PLPL Patain-like p 72.7 4.8 0.0001 26.3 2.7 37 17-55 84-120 (407)
267 cd07217 Pat17_PNPLA8_PNPLA9_li 72.4 4.9 0.00011 25.7 2.7 18 33-50 44-61 (344)
268 KOG4388|consensus 72.3 6.8 0.00015 27.4 3.4 41 25-65 464-508 (880)
269 PF06792 UPF0261: Uncharacteri 71.8 22 0.00048 23.5 5.5 51 11-62 77-127 (403)
270 COG0813 DeoD Purine-nucleoside 71.0 19 0.00041 22.0 4.7 44 27-70 53-98 (236)
271 cd07213 Pat17_PNPLA8_PNPLA9_li 70.6 5.6 0.00012 24.5 2.6 19 33-51 37-55 (288)
272 cd07229 Pat_TGL3_like Triacylg 68.9 7.4 0.00016 25.4 3.0 34 19-54 102-135 (391)
273 cd07211 Pat_PNPLA8 Patatin-lik 68.2 5.6 0.00012 24.6 2.3 17 33-49 44-60 (308)
274 cd07231 Pat_SDP1-like Sugar-De 68.2 6.7 0.00015 25.0 2.6 32 18-51 86-117 (323)
275 PF10142 PhoPQ_related: PhoPQ- 67.0 32 0.00069 22.4 5.5 37 26-63 168-204 (367)
276 PRK13938 phosphoheptose isomer 66.5 23 0.0005 20.8 4.5 25 28-52 44-68 (196)
277 cd01714 ETF_beta The electron 66.4 14 0.00031 21.6 3.6 38 9-52 94-135 (202)
278 TIGR03127 RuMP_HxlB 6-phospho 66.3 21 0.00047 20.1 4.6 35 13-51 18-52 (179)
279 cd07222 Pat_PNPLA4 Patatin-lik 63.6 20 0.00044 21.6 4.0 17 33-49 34-50 (246)
280 cd05005 SIS_PHI Hexulose-6-pho 63.5 25 0.00054 19.9 4.4 34 14-51 22-55 (179)
281 cd07220 Pat_PNPLA2 Patatin-lik 62.8 25 0.00053 21.5 4.3 21 32-52 38-58 (249)
282 PF08250 Sperm_act_pep: Sperm- 62.5 1.7 3.8E-05 13.3 -0.4 6 36-41 1-6 (10)
283 PF01118 Semialdhyde_dh: Semia 60.9 20 0.00044 18.9 3.4 30 31-61 1-31 (121)
284 PRK13690 hypothetical protein; 60.5 25 0.00054 20.7 3.8 32 9-40 4-36 (184)
285 PRK10886 DnaA initiator-associ 59.4 33 0.00071 20.2 4.3 39 13-51 25-63 (196)
286 cd07216 Pat17_PNPLA8_PNPLA9_li 58.6 8.4 0.00018 23.9 1.8 17 33-49 45-61 (309)
287 PRK14194 bifunctional 5,10-met 57.9 35 0.00075 21.6 4.4 42 8-50 139-182 (301)
288 PRK13936 phosphoheptose isomer 57.7 36 0.00078 19.8 4.4 26 27-52 41-66 (197)
289 cd07199 Pat17_PNPLA8_PNPLA9_li 57.6 11 0.00024 22.7 2.2 18 33-50 37-54 (258)
290 COG4553 DepA Poly-beta-hydroxy 57.3 51 0.0011 21.4 5.7 58 7-70 152-214 (415)
291 PRK11557 putative DNA-binding 57.2 42 0.0009 20.4 4.8 24 28-51 127-150 (278)
292 cd07221 Pat_PNPLA3 Patatin-lik 56.1 18 0.00039 22.1 2.9 21 32-52 34-54 (252)
293 PRK00414 gmhA phosphoheptose i 56.1 38 0.00083 19.6 4.5 37 13-49 28-64 (192)
294 KOG2214|consensus 56.0 5.1 0.00011 27.2 0.6 29 29-57 201-229 (543)
295 cd01820 PAF_acetylesterase_lik 55.2 29 0.00062 20.1 3.6 28 11-41 17-44 (214)
296 PRK12467 peptide synthase; Pro 55.0 88 0.0019 26.8 6.9 39 28-66 3755-3796(3956)
297 cd07214 Pat17_isozyme_like Pat 55.0 11 0.00025 24.0 2.0 18 33-50 46-63 (349)
298 PF03575 Peptidase_S51: Peptid 53.7 22 0.00047 19.7 2.8 13 32-44 70-82 (154)
299 PRK05441 murQ N-acetylmuramic 53.1 48 0.001 20.8 4.5 24 28-51 61-84 (299)
300 COG1737 RpiR Transcriptional r 53.0 52 0.0011 20.3 4.6 24 28-51 129-152 (281)
301 cd07215 Pat17_PNPLA8_PNPLA9_li 52.8 13 0.00028 23.4 2.0 17 33-49 43-59 (329)
302 PF00070 Pyr_redox: Pyridine n 52.4 17 0.00037 17.6 2.1 29 31-62 1-29 (80)
303 PF11181 YflT: Heat induced st 51.9 34 0.00073 17.7 3.9 29 12-40 9-37 (103)
304 TIGR03607 patatin-related prot 51.5 16 0.00035 26.0 2.4 18 32-49 68-85 (739)
305 PF02273 Acyl_transf_2: Acyl t 51.2 60 0.0013 20.5 5.8 53 11-67 84-136 (294)
306 PF10561 UPF0565: Uncharacteri 50.6 25 0.00053 22.4 2.9 24 27-50 190-213 (303)
307 PF13289 SIR2_2: SIR2-like dom 50.4 34 0.00074 18.1 3.2 16 27-42 84-99 (143)
308 KOG0256|consensus 49.2 72 0.0016 21.5 4.9 47 7-53 122-170 (471)
309 PRK15416 lipopolysaccharide co 49.0 29 0.00063 20.6 2.9 15 28-42 150-164 (201)
310 cd05007 SIS_Etherase N-acetylm 47.8 64 0.0014 19.7 4.4 25 28-52 48-72 (257)
311 TIGR02813 omega_3_PfaA polyket 47.6 32 0.00068 28.2 3.5 22 28-49 672-693 (2582)
312 PRK04148 hypothetical protein; 46.7 51 0.0011 18.3 3.7 22 29-50 17-38 (134)
313 PRK15482 transcriptional regul 46.7 67 0.0014 19.6 4.7 24 28-51 134-157 (285)
314 COG4667 Predicted esterase of 46.7 11 0.00025 23.6 1.0 22 33-54 43-64 (292)
315 PF04443 LuxE: Acyl-protein sy 46.3 81 0.0017 20.5 5.1 51 15-65 177-231 (365)
316 PRK01710 murD UDP-N-acetylmura 46.1 64 0.0014 21.3 4.4 34 13-51 3-36 (458)
317 PF08484 Methyltransf_14: C-me 45.1 58 0.0013 18.5 4.8 34 29-62 68-101 (160)
318 KOG2248|consensus 45.1 35 0.00076 22.4 3.1 33 29-63 292-325 (380)
319 COG3621 Patatin [General funct 44.6 52 0.0011 21.5 3.7 20 33-52 45-64 (394)
320 PF14987 NADHdh_A3: NADH dehyd 44.5 44 0.00096 17.0 2.9 19 27-45 13-31 (84)
321 PF00091 Tubulin: Tubulin/FtsZ 44.0 25 0.00054 20.7 2.2 17 28-44 122-138 (216)
322 TIGR03169 Nterm_to_SelD pyridi 42.6 58 0.0013 20.4 3.7 33 31-63 1-33 (364)
323 TIGR02690 resist_ArsH arsenica 42.0 56 0.0012 19.6 3.4 33 9-42 103-140 (219)
324 PF04260 DUF436: Protein of un 41.9 61 0.0013 18.9 3.4 26 15-40 3-29 (172)
325 COG3675 Predicted lipase [Lipi 41.6 26 0.00056 22.4 2.0 23 27-49 171-194 (332)
326 COG4475 Uncharacterized protei 41.1 73 0.0016 18.5 4.0 30 11-40 4-34 (180)
327 PRK13937 phosphoheptose isomer 41.0 71 0.0015 18.4 4.2 36 13-48 22-57 (188)
328 PRK13512 coenzyme A disulfide 40.1 57 0.0012 21.3 3.5 32 30-62 2-33 (438)
329 COG2201 CheB Chemotaxis respon 39.9 70 0.0015 20.8 3.8 33 29-61 156-189 (350)
330 COG5242 TFB4 RNA polymerase II 39.7 63 0.0014 20.0 3.4 31 11-41 46-76 (296)
331 cd00382 beta_CA Carbonic anhyd 39.7 60 0.0013 17.4 3.1 18 27-44 56-73 (119)
332 cd03131 GATase1_HTS Type 1 glu 39.4 12 0.00027 21.6 0.4 33 13-50 85-117 (175)
333 cd07219 Pat_PNPLA1 Patatin-lik 39.3 91 0.002 20.6 4.2 19 32-50 46-64 (382)
334 cd06143 PAN2_exo DEDDh 3'-5' e 39.3 41 0.00088 19.6 2.5 13 30-42 101-113 (174)
335 PRK11302 DNA-binding transcrip 39.1 89 0.0019 18.9 4.5 22 28-49 127-148 (284)
336 PF00300 His_Phos_1: Histidine 38.9 16 0.00035 19.6 0.8 30 9-38 123-152 (158)
337 COG0421 SpeE Spermidine syntha 38.4 66 0.0014 20.1 3.5 31 29-62 77-107 (282)
338 cd01066 APP_MetAP A family inc 37.1 34 0.00073 19.2 2.0 28 13-40 129-157 (207)
339 cd05009 SIS_GlmS_GlmD_2 SIS (S 37.0 70 0.0015 17.1 3.6 23 28-50 12-34 (153)
340 TIGR01440 conserved hypothetic 36.6 72 0.0016 18.6 3.2 25 16-40 4-29 (172)
341 PRK14869 putative manganese-de 35.4 41 0.00088 22.7 2.4 21 30-50 3-29 (546)
342 PRK05368 homoserine O-succinyl 35.3 63 0.0014 20.5 3.0 32 14-50 123-154 (302)
343 PRK05571 ribose-5-phosphate is 35.3 87 0.0019 17.7 4.3 28 32-63 63-90 (148)
344 PF15566 Imm18: Immunity prote 35.2 37 0.00081 15.8 1.6 16 28-43 19-34 (52)
345 PF05005 Ocnus: Janus/Ocnus fa 35.0 22 0.00049 19.0 0.9 12 29-40 75-86 (108)
346 KOG2308|consensus 35.0 12 0.00025 26.6 -0.2 22 30-51 417-438 (741)
347 cd01090 Creatinase Creatine am 34.9 44 0.00096 19.8 2.3 29 13-41 136-165 (228)
348 PHA02595 tk.4 hypothetical pro 34.9 25 0.00053 19.8 1.1 17 37-53 29-45 (154)
349 TIGR00689 rpiB_lacA_lacB sugar 34.8 88 0.0019 17.6 4.5 27 32-62 60-86 (144)
350 PRK07877 hypothetical protein; 34.8 54 0.0012 23.4 2.9 35 27-63 105-139 (722)
351 PHA00490 terminal protein 34.3 52 0.0011 20.0 2.4 42 14-57 100-141 (266)
352 PRK14046 malate--CoA ligase su 34.1 38 0.00083 22.1 2.0 32 29-60 118-149 (392)
353 COG2194 Predicted membrane-ass 34.1 64 0.0014 22.3 3.1 46 11-59 356-401 (555)
354 PF01221 Dynein_light: Dynein 33.9 20 0.00044 18.1 0.6 10 33-42 56-65 (89)
355 PF02502 LacAB_rpiB: Ribose/Ga 33.8 90 0.002 17.4 3.7 28 32-63 61-88 (140)
356 PRK02947 hypothetical protein; 33.3 79 0.0017 19.1 3.2 24 28-51 39-62 (246)
357 cd05006 SIS_GmhA Phosphoheptos 33.2 94 0.002 17.5 4.3 38 13-50 17-54 (177)
358 cd01715 ETF_alpha The electron 33.1 86 0.0019 17.6 3.2 37 10-52 70-107 (168)
359 PRK05447 1-deoxy-D-xylulose 5- 32.9 1.1E+02 0.0024 20.3 3.9 11 45-55 18-28 (385)
360 cd02006 TPP_Gcl Thiamine pyrop 32.7 47 0.001 19.3 2.1 14 35-48 59-72 (202)
361 PF07992 Pyr_redox_2: Pyridine 32.5 56 0.0012 18.2 2.4 21 31-51 1-21 (201)
362 PF02882 THF_DHG_CYH_C: Tetrah 32.2 1E+02 0.0022 17.6 4.5 42 8-50 16-59 (160)
363 cd03379 beta_CA_cladeD Carboni 31.9 94 0.002 17.1 3.1 16 27-42 53-68 (142)
364 PF01494 FAD_binding_3: FAD bi 31.7 90 0.002 18.9 3.3 22 31-52 3-24 (356)
365 cd01086 MetAP1 Methionine Amin 31.3 53 0.0011 19.3 2.2 30 13-43 135-165 (238)
366 cd01092 APP-like Similar to Pr 31.3 42 0.0009 19.1 1.7 30 12-41 129-159 (208)
367 KOG1374|consensus 31.1 1.7E+02 0.0036 19.7 4.7 47 7-54 110-164 (448)
368 COG0431 Predicted flavoprotein 31.0 91 0.002 17.9 3.1 40 10-49 81-120 (184)
369 PRK04965 NADH:flavorubredoxin 30.9 1.1E+02 0.0025 19.3 3.8 22 30-51 3-24 (377)
370 KOG2968|consensus 30.9 54 0.0012 24.4 2.4 31 19-51 858-888 (1158)
371 cd02001 TPP_ComE_PpyrDC Thiami 30.7 36 0.00077 19.0 1.4 15 34-48 43-57 (157)
372 COG3340 PepE Peptidase E [Amin 30.7 28 0.00061 21.1 0.9 16 32-47 119-134 (224)
373 PRK14538 putative bifunctional 30.7 2.2E+02 0.0048 21.0 5.3 23 28-50 366-394 (838)
374 PF13580 SIS_2: SIS domain; PD 30.6 97 0.0021 16.8 3.9 24 28-51 34-57 (138)
375 TIGR00243 Dxr 1-deoxy-D-xylulo 30.4 1.4E+02 0.003 19.8 4.1 18 30-47 26-43 (389)
376 TIGR00441 gmhA phosphoheptose 30.3 1E+02 0.0022 17.0 3.2 22 28-49 10-31 (154)
377 PRK05716 methionine aminopepti 30.3 50 0.0011 19.6 2.0 30 12-42 144-174 (252)
378 cd00883 beta_CA_cladeA Carboni 29.9 1.2E+02 0.0025 17.6 3.6 21 27-47 78-98 (182)
379 cd03129 GAT1_Peptidase_E_like 29.6 65 0.0014 18.8 2.4 18 30-47 113-130 (210)
380 PLN02629 powdery mildew resist 29.3 46 0.001 21.9 1.8 24 16-44 112-135 (387)
381 KOG2794|consensus 29.2 82 0.0018 20.1 2.8 33 2-39 175-207 (340)
382 cd02185 AroH Chorismate mutase 29.0 1E+02 0.0022 16.9 2.8 37 3-39 10-47 (117)
383 COG2885 OmpA Outer membrane pr 29.0 86 0.0019 17.9 2.8 12 27-38 112-123 (190)
384 PRK10892 D-arabinose 5-phospha 28.9 95 0.0021 19.3 3.1 22 30-51 48-69 (326)
385 PF01380 SIS: SIS domain SIS d 28.9 93 0.002 16.1 2.9 24 28-51 4-27 (131)
386 cd05212 NAD_bind_m-THF_DH_Cycl 28.7 1.1E+02 0.0024 16.9 3.5 46 3-49 3-48 (140)
387 PF12242 Eno-Rase_NADH_b: NAD( 28.7 90 0.0019 15.8 4.7 41 12-52 20-62 (78)
388 PF12165 DUF3594: Domain of un 28.6 75 0.0016 17.7 2.3 29 11-42 21-49 (137)
389 cd01014 nicotinamidase_related 28.4 1.1E+02 0.0024 16.8 5.2 49 14-67 89-137 (155)
390 cd01985 ETF The electron trans 28.2 99 0.0021 17.5 2.9 36 11-52 79-115 (181)
391 PRK06163 hypothetical protein; 28.2 86 0.0019 18.5 2.7 14 35-48 59-72 (202)
392 TIGR01796 CM_mono_aroH monofun 27.8 1.1E+02 0.0024 16.7 2.8 37 3-39 10-47 (117)
393 PRK07281 methionine aminopepti 27.5 96 0.0021 19.4 2.9 28 13-41 175-203 (286)
394 PLN02994 1-aminocyclopropane-1 27.2 1.2E+02 0.0027 17.0 5.4 37 27-65 115-151 (153)
395 PRK05282 (alpha)-aspartyl dipe 27.1 1.3E+02 0.0027 18.3 3.3 18 31-48 113-130 (233)
396 PRK11337 DNA-binding transcrip 26.8 1.6E+02 0.0034 18.0 4.8 24 28-51 139-162 (292)
397 cd01080 NAD_bind_m-THF_DH_Cycl 26.8 1.3E+02 0.0029 17.2 3.9 41 9-50 25-66 (168)
398 PF04816 DUF633: Family of unk 26.7 1.4E+02 0.0031 17.7 3.4 28 31-60 69-99 (205)
399 cd03146 GAT1_Peptidase_E Type 26.4 69 0.0015 18.8 2.1 17 31-47 114-130 (212)
400 PF07812 TfuA: TfuA-like prote 26.4 1.2E+02 0.0026 16.6 2.8 19 31-49 23-41 (120)
401 PTZ00215 ribose 5-phosphate is 26.3 1.3E+02 0.0029 17.0 4.5 28 31-62 65-92 (151)
402 PRK06193 hypothetical protein; 26.2 1.2E+02 0.0025 18.2 3.0 25 12-39 141-165 (206)
403 KOG3553|consensus 26.1 33 0.00071 18.4 0.6 20 29-48 31-50 (124)
404 COG3952 Predicted membrane pro 26.0 60 0.0013 17.5 1.6 17 39-55 66-82 (113)
405 PRK14176 bifunctional 5,10-met 25.9 1.8E+02 0.0039 18.4 4.1 42 8-50 144-187 (287)
406 KOG3430|consensus 25.9 1.1E+02 0.0024 15.9 2.8 34 11-44 35-68 (90)
407 PRK11789 N-acetyl-anhydromuran 25.7 92 0.002 18.3 2.5 29 9-39 129-158 (185)
408 PLN03006 carbonate dehydratase 25.7 1.4E+02 0.003 19.1 3.4 21 27-47 169-189 (301)
409 PRK09273 hypothetical protein; 25.6 1.6E+02 0.0035 17.8 4.1 27 32-62 68-94 (211)
410 PLN03019 carbonic anhydrase 25.3 1.9E+02 0.0041 18.8 3.9 21 27-47 212-232 (330)
411 PF13839 PC-Esterase: GDSL/SGN 25.2 1.5E+02 0.0033 17.4 4.2 33 13-50 4-36 (263)
412 cd00384 ALAD_PBGS Porphobilino 25.2 1.1E+02 0.0024 19.7 2.9 33 1-38 153-185 (314)
413 PTZ00387 epsilon tubulin; Prov 25.1 1.1E+02 0.0024 20.7 3.0 18 33-50 134-155 (465)
414 COG4425 Predicted membrane pro 24.8 1.3E+02 0.0027 20.8 3.2 37 29-65 396-435 (588)
415 cd02013 TPP_Xsc_like Thiamine 24.8 88 0.0019 18.1 2.3 16 33-48 53-68 (196)
416 KOG4231|consensus 24.8 37 0.0008 23.7 0.8 19 33-51 453-471 (763)
417 PRK15180 Vi polysaccharide bio 24.7 1.1E+02 0.0024 21.4 2.9 32 3-39 167-198 (831)
418 cd00884 beta_CA_cladeB Carboni 24.6 1.6E+02 0.0034 17.3 3.7 22 27-48 84-105 (190)
419 PRK00443 nagB glucosamine-6-ph 24.5 1.3E+02 0.0029 18.0 3.1 38 7-44 8-46 (261)
420 cd05013 SIS_RpiR RpiR-like pro 24.5 1.2E+02 0.0025 15.7 3.7 21 30-50 14-34 (139)
421 PRK14576 putative endopeptidas 24.5 61 0.0013 21.1 1.8 32 13-44 311-343 (405)
422 PRK06719 precorrin-2 dehydroge 24.2 1.3E+02 0.0027 16.9 2.8 21 27-50 11-31 (157)
423 TIGR03162 ribazole_cobC alpha- 24.2 1.4E+02 0.003 16.5 5.1 32 6-38 115-146 (177)
424 PLN03058 dynein light chain ty 24.0 1.2E+02 0.0025 16.8 2.6 32 13-44 69-100 (128)
425 PF00857 Isochorismatase: Isoc 24.0 1.4E+02 0.003 16.4 3.4 46 13-63 101-146 (174)
426 PRK09564 coenzyme A disulfide 23.8 1.5E+02 0.0033 19.2 3.4 21 31-51 2-22 (444)
427 PRK08671 methionine aminopepti 23.6 76 0.0017 19.7 2.0 29 12-41 127-156 (291)
428 cd01088 MetAP2 Methionine Amin 23.6 66 0.0014 20.0 1.7 29 12-41 126-155 (291)
429 PF00625 Guanylate_kin: Guanyl 23.5 1.5E+02 0.0033 16.7 3.8 38 30-67 3-42 (183)
430 PLN03093 Protein SENSITIVITY T 23.3 1.2E+02 0.0026 19.1 2.7 16 29-44 197-212 (273)
431 PRK14175 bifunctional 5,10-met 23.3 2.1E+02 0.0045 18.1 4.1 42 8-50 138-181 (286)
432 cd03331 Macro_Poa1p_like_SNF2 23.2 65 0.0014 18.2 1.5 16 38-53 31-47 (152)
433 cd08201 plant_peroxidase_like_ 23.2 51 0.0011 20.6 1.1 40 8-47 137-179 (264)
434 COG2845 Uncharacterized protei 23.1 59 0.0013 21.1 1.4 22 28-49 115-136 (354)
435 COG0084 TatD Mg-dependent DNas 23.0 2E+02 0.0043 17.8 5.1 53 10-65 14-67 (256)
436 PF07578 LAB_N: Lipid A Biosyn 22.9 11 0.00023 18.8 -1.5 18 28-45 50-67 (72)
437 PHA01790 streptodornase 22.9 36 0.00079 21.7 0.5 15 29-43 180-194 (326)
438 PRK14101 bifunctional glucokin 22.7 2.8E+02 0.006 19.4 4.7 24 28-51 467-490 (638)
439 PRK13384 delta-aminolevulinic 22.7 1.2E+02 0.0026 19.6 2.7 33 1-38 163-195 (322)
440 PF05600 DUF773: Protein of un 22.6 93 0.002 21.3 2.3 26 11-36 482-507 (507)
441 PF00490 ALAD: Delta-aminolevu 22.3 1.2E+02 0.0026 19.6 2.6 32 2-38 164-195 (324)
442 PRK13463 phosphatase PhoE; Pro 22.2 1.7E+02 0.0038 16.9 4.8 42 7-49 122-163 (203)
443 PF10605 3HBOH: 3HB-oligomer h 22.1 2.4E+02 0.0053 20.2 4.1 38 32-69 287-325 (690)
444 PRK09795 aminopeptidase; Provi 21.9 76 0.0016 20.2 1.8 27 14-40 268-295 (361)
445 PRK09754 phenylpropionate diox 21.8 2.3E+02 0.005 18.2 4.9 32 30-62 4-35 (396)
446 PF04665 Pox_A32: Poxvirus A32 21.8 1.6E+02 0.0035 18.1 3.1 34 30-63 14-49 (241)
447 cd03372 TPP_ComE Thiamine pyro 21.8 59 0.0013 18.6 1.2 16 33-48 42-57 (179)
448 PLN03014 carbonic anhydrase 21.8 2.4E+02 0.0052 18.5 3.9 21 27-47 217-237 (347)
449 cd01406 SIR2-like Sir2-like: P 21.7 1.2E+02 0.0027 18.0 2.6 21 29-49 179-199 (242)
450 PRK09283 delta-aminolevulinic 21.7 1.3E+02 0.0028 19.5 2.7 33 1-38 161-193 (323)
451 TIGR00500 met_pdase_I methioni 21.6 75 0.0016 18.9 1.6 29 13-42 143-172 (247)
452 PRK11543 gutQ D-arabinose 5-ph 21.4 2.2E+02 0.0047 17.7 4.1 22 30-51 43-64 (321)
453 cd07379 MPP_239FB Homo sapiens 21.4 1.3E+02 0.0027 16.0 2.4 23 13-41 94-116 (135)
454 cd04823 ALAD_PBGS_aspartate_ri 21.4 1.2E+02 0.0025 19.7 2.4 33 1-38 158-190 (320)
455 KOG1752|consensus 21.4 61 0.0013 17.1 1.1 22 28-49 67-88 (104)
456 KOG1578|consensus 21.3 91 0.002 19.7 1.9 25 27-51 151-175 (276)
457 cd00286 Tubulin_FtsZ Tubulin/F 21.3 2.3E+02 0.0049 17.8 4.8 14 28-41 87-100 (328)
458 PRK12474 hypothetical protein; 21.0 98 0.0021 20.8 2.2 16 34-49 390-405 (518)
459 cd03145 GAT1_cyanophycinase Ty 21.0 87 0.0019 18.5 1.8 19 30-48 116-134 (217)
460 PLN00416 carbonate dehydratase 21.0 2.2E+02 0.0048 17.7 3.8 22 27-48 137-158 (258)
461 cd02012 TPP_TK Thiamine pyroph 20.9 1.1E+02 0.0024 18.5 2.2 30 34-63 106-135 (255)
462 TIGR02733 desat_CrtD C-3',4' d 20.9 1.7E+02 0.0037 19.4 3.3 22 30-51 2-23 (492)
463 PF00557 Peptidase_M24: Metall 20.6 23 0.0005 20.3 -0.6 28 13-40 129-157 (207)
464 KOG2088|consensus 20.6 75 0.0016 22.2 1.6 21 28-48 250-270 (596)
465 cd04824 eu_ALAD_PBGS_cysteine_ 20.6 1.6E+02 0.0034 19.1 2.9 33 1-38 157-190 (320)
466 PF07736 CM_1: Chorismate muta 20.5 1.7E+02 0.0036 16.1 2.9 37 3-39 10-47 (118)
467 KOG0681|consensus 20.2 74 0.0016 22.3 1.5 26 28-53 194-219 (645)
468 COG2390 DeoR Transcriptional r 20.1 2.6E+02 0.0055 18.0 6.4 57 7-65 92-150 (321)
No 1
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.40 E-value=1.2e-12 Score=78.71 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=47.7
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
+.+.+++++.++++. +..++++++||||||.+++.++.++|++++++|++++..
T Consensus 84 ~~~~~a~~l~~~l~~-----l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~ 137 (294)
T PLN02824 84 TFETWGEQLNDFCSD-----VVGDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISL 137 (294)
T ss_pred CHHHHHHHHHHHHHH-----hcCCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCc
Confidence 456678888888887 466899999999999999999999999999999999764
No 2
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.39 E-value=8.9e-13 Score=76.83 Aligned_cols=61 Identities=51% Similarity=0.767 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCCCC
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKSF 71 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~ 71 (75)
..+.+.++++...+.+++.++++++|+|+||.+++.++.++|..++++|.++++++....+
T Consensus 86 s~~~l~~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~~ 146 (216)
T PF02230_consen 86 SAERLDELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESEL 146 (216)
T ss_dssp HHHHHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCCC
T ss_pred HHHHHHHHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccccccc
Confidence 4566778888777777888999999999999999999999999999999999998776543
No 3
>KOG4409|consensus
Probab=99.39 E-value=9.4e-13 Score=81.22 Aligned_cols=42 Identities=29% Similarity=0.498 Sum_probs=38.2
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCC
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 68 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~ 68 (75)
.+.++.+|+|||+||+++..||.+||++|+.+|+++|+.-..
T Consensus 157 ~~L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~ 198 (365)
T KOG4409|consen 157 MGLEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPE 198 (365)
T ss_pred cCCcceeEeeccchHHHHHHHHHhChHhhceEEEeccccccc
Confidence 467799999999999999999999999999999999986443
No 4
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.35 E-value=2.1e-12 Score=77.19 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=48.0
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
+.+.+++++.++++. ++.++++|+||||||.+++.++.++|++++++|+++++..
T Consensus 73 ~~~~~~~~~~~~i~~-----l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~ 127 (276)
T TIGR02240 73 RFPGLAKLAARMLDY-----LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAG 127 (276)
T ss_pred cHHHHHHHHHHHHHH-----hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCc
Confidence 456677888888887 5677899999999999999999999999999999998753
No 5
>PLN02965 Probable pheophorbidase
Probab=99.35 E-value=3.9e-12 Score=75.31 Aligned_cols=54 Identities=11% Similarity=0.292 Sum_probs=46.3
Q ss_pred CcccHHHHHHHHHHHHHHcCCCC-CceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPS-DRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
+.+.+++|+.++++. ++. ++++++||||||.+++.++.++|++|+++|++++..
T Consensus 53 ~~~~~a~dl~~~l~~-----l~~~~~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~ 107 (255)
T PLN02965 53 SSDQYNRPLFALLSD-----LPPDHKVILVGHSIGGGSVTEALCKFTDKISMAIYVAAAM 107 (255)
T ss_pred CHHHHHHHHHHHHHh-----cCCCCCEEEEecCcchHHHHHHHHhCchheeEEEEEcccc
Confidence 345677888888887 555 589999999999999999999999999999999763
No 6
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.35 E-value=4.7e-12 Score=71.83 Aligned_cols=55 Identities=25% Similarity=0.356 Sum_probs=47.6
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
+.+..++++.++++. +..++++++|||+||.+++.++.++|++++++|+++++..
T Consensus 48 ~~~~~~~~l~~~l~~-----~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~ 102 (228)
T PF12697_consen 48 SIEDYAEDLAELLDA-----LGIKKVILVGHSMGGMIALRLAARYPDRVKGLVLLSPPPP 102 (228)
T ss_dssp SHHHHHHHHHHHHHH-----TTTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESESSS
T ss_pred chhhhhhhhhhcccc-----cccccccccccccccccccccccccccccccceeeccccc
Confidence 345567788888877 5668999999999999999999999999999999998874
No 7
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.34 E-value=3.4e-12 Score=73.33 Aligned_cols=51 Identities=25% Similarity=0.279 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccc
Q psy7212 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCW 64 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~ 64 (75)
..+.+++..+++. ++.++++++||||||.+++.++.++|++++++|+++++
T Consensus 28 ~~~~~~~~~~~~~-----l~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~~~~ 78 (230)
T PF00561_consen 28 DDLAADLEALREA-----LGIKKINLVGHSMGGMLALEYAAQYPERVKKLVLISPP 78 (230)
T ss_dssp HHHHHHHHHHHHH-----HTTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESES
T ss_pred HHHHHHHHHHHHH-----hCCCCeEEEEECCChHHHHHHHHHCchhhcCcEEEeee
Confidence 3344555555554 46677999999999999999999999999999999985
No 8
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.33 E-value=6.1e-12 Score=75.69 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=47.4
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
+.+.+++++.++++. ++.++++++|||+||.+++.++.++|++++++|++++..
T Consensus 75 ~~~~~a~dl~~ll~~-----l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~ 128 (295)
T PRK03592 75 TFADHARYLDAWFDA-----LGLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIV 128 (295)
T ss_pred CHHHHHHHHHHHHHH-----hCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCC
Confidence 456677888888887 567899999999999999999999999999999999743
No 9
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.31 E-value=1.5e-11 Score=75.14 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=50.0
Q ss_pred CcccHHHHHHHHHHHHHHc-CCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCC
Q psy7212 7 QGPGIGKVKHRYFCEEVSA-GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 68 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~ 68 (75)
+.+.+.+|+..+++.+... ..+..+++++||||||.+++.++.++|++++++|+++++....
T Consensus 110 ~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~ 172 (330)
T PLN02298 110 NVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKIS 172 (330)
T ss_pred CHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCC
Confidence 4456788899999876532 2334579999999999999999999999999999999876443
No 10
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.29 E-value=1.4e-11 Score=74.50 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=46.1
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
.+.+++++.+++++ ++.++++++||||||.++..++.++|++++++|++++..+
T Consensus 98 ~~~~a~~l~~~l~~-----l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 151 (302)
T PRK00870 98 YARHVEWMRSWFEQ-----LDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLP 151 (302)
T ss_pred HHHHHHHHHHHHHH-----cCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCC
Confidence 35567777777776 5677999999999999999999999999999999987543
No 11
>PRK10749 lysophospholipase L2; Provisional
Probab=99.28 E-value=2.7e-11 Score=74.36 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=48.6
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
+.+.+++|+..+++.+.+. .+..+++++||||||.++..++.++|+.++++|+++|...
T Consensus 109 ~~~~~~~d~~~~~~~~~~~-~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~ 167 (330)
T PRK10749 109 RFNDYVDDLAAFWQQEIQP-GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFG 167 (330)
T ss_pred cHHHHHHHHHHHHHHHHhc-CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhc
Confidence 4556778888888765432 2557899999999999999999999999999999998754
No 12
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.28 E-value=1.8e-11 Score=75.55 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=47.8
Q ss_pred CcccHHHHHHHHHHHHHH-cCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCC
Q psy7212 7 QGPGIGKVKHRYFCEEVS-AGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 67 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~ 67 (75)
+.+.+++|+.++++.+.. ...+..+++|+||||||.+++.++.++|++++++|+++|....
T Consensus 138 ~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~ 199 (349)
T PLN02385 138 SFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKI 199 (349)
T ss_pred CHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccc
Confidence 345567777777776532 2234458999999999999999999999999999999986543
No 13
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.28 E-value=9.7e-12 Score=76.62 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=45.4
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCc-eEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDR-IVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
...+++++.++++. ++.++ ++++||||||.+++.++.++|++++++|++++..
T Consensus 120 ~~~~a~dl~~ll~~-----l~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~LvLi~s~~ 173 (343)
T PRK08775 120 TADQADAIALLLDA-----LGIARLHAFVGYSYGALVGLQFASRHPARVRTLVVVSGAH 173 (343)
T ss_pred HHHHHHHHHHHHHH-----cCCCcceEEEEECHHHHHHHHHHHHChHhhheEEEECccc
Confidence 44568888888887 56656 4799999999999999999999999999999764
No 14
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.27 E-value=2.9e-11 Score=70.56 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=45.3
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCc-ccEEEEecccCC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKK-LAGVVALSCWLP 66 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~-~~~~v~~~~~~~ 66 (75)
+.+.+++++.++++. .+.++++++||||||.+++.++.++|+. +++++++++...
T Consensus 48 ~~~~~~~~l~~~l~~-----~~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~ 103 (242)
T PRK11126 48 GFADVSRLLSQTLQS-----YNILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPG 103 (242)
T ss_pred CHHHHHHHHHHHHHH-----cCCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCC
Confidence 445667777777776 5678999999999999999999999764 999999887643
No 15
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.27 E-value=1.7e-11 Score=71.93 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccc
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCW 64 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~ 64 (75)
+.+.+++|+.++++. ++.++++++||||||.+++.++.++|++++++|++++.
T Consensus 63 ~~~~~~~d~~~~l~~-----l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~ 115 (255)
T PRK10673 63 NYPAMAQDLLDTLDA-----LQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIA 115 (255)
T ss_pred CHHHHHHHHHHHHHH-----cCCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecC
Confidence 445667788888877 56678999999999999999999999999999999753
No 16
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.26 E-value=1.9e-11 Score=75.55 Aligned_cols=54 Identities=22% Similarity=0.240 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCc-eEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDR-IVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
.+.+++++.+++++ ++.++ ++++||||||.+++.++.++|++++++|++++...
T Consensus 109 ~~~~~~~~~~~~~~-----l~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 163 (351)
T TIGR01392 109 IRDDVKAQKLLLDH-----LGIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSAR 163 (351)
T ss_pred HHHHHHHHHHHHHH-----cCCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCc
Confidence 45566777777766 56778 99999999999999999999999999999998654
No 17
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.25 E-value=2.1e-11 Score=72.58 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccc
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCW 64 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~ 64 (75)
.++++.++++. ++.++++++||||||.+++.++.++|++++++|++++.
T Consensus 87 ~~~~l~~~l~~-----l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 135 (282)
T TIGR03343 87 NARAVKGLMDA-----LDIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPG 135 (282)
T ss_pred hHHHHHHHHHH-----cCCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCC
Confidence 46778888877 67789999999999999999999999999999999875
No 18
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.23 E-value=4.5e-11 Score=72.96 Aligned_cols=60 Identities=22% Similarity=0.222 Sum_probs=50.5
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCC
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 68 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~ 68 (75)
.+.+..|+..+++..... ....+++++||||||.+++.++.+++..++++|+.+|.+.+.
T Consensus 86 f~~~~~dl~~~~~~~~~~-~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~ 145 (298)
T COG2267 86 FADYVDDLDAFVETIAEP-DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLG 145 (298)
T ss_pred HHHHHHHHHHHHHHHhcc-CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCC
Confidence 456778888888775433 245789999999999999999999999999999999998765
No 19
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.22 E-value=5.9e-11 Score=71.73 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHc-CCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCCC
Q psy7212 11 IGKVKHRYFCEEVSA-GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKS 70 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~-~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~~ 70 (75)
..+++.++++.+... +.+.++++++||||||.++..++.++|+++++++.++|..+....
T Consensus 92 v~~~la~~l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p~f~~ 152 (275)
T cd00707 92 VGAELAKFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGPLFSG 152 (275)
T ss_pred HHHHHHHHHHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCcccccC
Confidence 346677777776533 456789999999999999999999999999999999988766543
No 20
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.21 E-value=1.1e-10 Score=74.41 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=51.1
Q ss_pred ccHHHHHHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCCC
Q psy7212 9 PGIGKVKHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKS 70 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~~ 70 (75)
..+.+++.++++.+. ..+++.++++++||||||.+|..++.++|+++.++++++|..+....
T Consensus 97 ~~vg~~la~lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAgP~F~~ 159 (442)
T TIGR03230 97 KLVGKDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAGPTFEY 159 (442)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCCCcccc
Confidence 345567788887765 34567789999999999999999999999999999999998776543
No 21
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.20 E-value=5.7e-11 Score=74.79 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=46.1
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceE-EEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIV-IGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
+...+++++.+++++ ++.+++. ++||||||.+++.++.++|++++++|++++...
T Consensus 142 t~~d~~~~~~~ll~~-----lgi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~~ 197 (389)
T PRK06765 142 TILDFVRVQKELIKS-----LGIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNPQ 197 (389)
T ss_pred cHHHHHHHHHHHHHH-----cCCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCCC
Confidence 455566777777766 6778886 999999999999999999999999999987654
No 22
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.20 E-value=9.4e-11 Score=69.23 Aligned_cols=54 Identities=24% Similarity=0.148 Sum_probs=45.4
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
+.+.+++++.++++. .+.++++++||||||.+++.++.++|++++++|++++..
T Consensus 77 ~~~~~~~~l~~~i~~-----~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~ 130 (278)
T TIGR03056 77 TLPSMAEDLSALCAA-----EGLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAAL 130 (278)
T ss_pred CHHHHHHHHHHHHHH-----cCCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcc
Confidence 445567777777766 456789999999999999999999999999999998754
No 23
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.19 E-value=7e-11 Score=69.43 Aligned_cols=53 Identities=25% Similarity=0.170 Sum_probs=44.2
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
.+.+++++..+++. ++.++++++||||||.+++.++.++|++++++|++++..
T Consensus 79 ~~~~~~~~~~~~~~-----~~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 131 (288)
T TIGR01250 79 IDYFVDELEEVREK-----LGLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLD 131 (288)
T ss_pred HHHHHHHHHHHHHH-----cCCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccc
Confidence 34566677676666 566789999999999999999999999999999988754
No 24
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.19 E-value=4e-11 Score=69.68 Aligned_cols=55 Identities=22% Similarity=0.399 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
+.+..++++.++++. ++.++++++||||||.+++.++.++|+.++++|+++++..
T Consensus 62 ~~~~~~~~~~~~i~~-----~~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~ 116 (257)
T TIGR03611 62 SIAHMADDVLQLLDA-----LNIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSR 116 (257)
T ss_pred CHHHHHHHHHHHHHH-----hCCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCC
Confidence 344556677777766 4667899999999999999999999999999999997654
No 25
>PLN02578 hydrolase
Probab=99.19 E-value=7.1e-11 Score=73.16 Aligned_cols=52 Identities=29% Similarity=0.299 Sum_probs=44.4
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
+.+.+++.++++. +..++++++|||+||.+++.++.++|++++++|++++..
T Consensus 136 ~~~a~~l~~~i~~-----~~~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~ 187 (354)
T PLN02578 136 MVWRDQVADFVKE-----VVKEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAG 187 (354)
T ss_pred HHHHHHHHHHHHH-----hccCCeEEEEECHHHHHHHHHHHhChHhcceEEEECCCc
Confidence 4456677788777 456789999999999999999999999999999998754
No 26
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.19 E-value=8.1e-11 Score=73.57 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=47.2
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCc-eEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDR-IVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
+.+.+++++.++++. ++.++ ++++||||||.+++.++.++|++++++|++++...
T Consensus 128 ~~~~~~~~~~~~l~~-----l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 183 (379)
T PRK00175 128 TIRDWVRAQARLLDA-----LGITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSAR 183 (379)
T ss_pred CHHHHHHHHHHHHHH-----hCCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcc
Confidence 455677788888877 57778 58999999999999999999999999999997654
No 27
>PRK06489 hypothetical protein; Provisional
Probab=99.17 E-value=8e-11 Score=73.01 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=34.3
Q ss_pred CCCCceE-EEEeChhHHHHHHHHHhCCCcccEEEEeccc
Q psy7212 27 IPSDRIV-IGGFSQGGALALYSALTYPKKLAGVVALSCW 64 (75)
Q Consensus 27 ~~~~~~~-l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~ 64 (75)
++.++++ ++||||||.+++.++.++|++++++|++++.
T Consensus 150 lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~ 188 (360)
T PRK06489 150 LGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQ 188 (360)
T ss_pred cCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccC
Confidence 5667875 8999999999999999999999999999875
No 28
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.17 E-value=1.2e-10 Score=66.87 Aligned_cols=40 Identities=33% Similarity=0.585 Sum_probs=36.1
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
++.++++++|||+||.+++.++.++|+.+++++++++...
T Consensus 67 ~~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~ 106 (251)
T TIGR03695 67 LGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPG 106 (251)
T ss_pred cCCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCC
Confidence 4667899999999999999999999999999999987654
No 29
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.16 E-value=3.2e-11 Score=69.44 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=44.2
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
.+.+++++.++++. ++.++++++|||+||.+++.++.++|+.++++|++++..
T Consensus 62 ~~~~~~~~~~~i~~-----~~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~ 114 (251)
T TIGR02427 62 IEDLADDVLALLDH-----LGIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAA 114 (251)
T ss_pred HHHHHHHHHHHHHH-----hCCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCcc
Confidence 34556677777766 466789999999999999999999999999999998654
No 30
>PRK07581 hypothetical protein; Validated
Probab=99.16 E-value=7.9e-11 Score=72.30 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=41.7
Q ss_pred HHHHHHH----HHHHHHHcCCCCCc-eEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 11 IGKVKHR----YFCEEVSAGIPSDR-IVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 11 ~~~~~~~----~~~~~~~~~~~~~~-~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
+++++.. +++. ++.++ ++|+||||||.+++.++.+||++|+++|++++...
T Consensus 105 ~~~~~~~~~~~l~~~-----lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~ 160 (339)
T PRK07581 105 IYDNVRAQHRLLTEK-----FGIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAK 160 (339)
T ss_pred HHHHHHHHHHHHHHH-----hCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCC
Confidence 4666665 4444 56778 57999999999999999999999999999987653
No 31
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.15 E-value=1.3e-10 Score=69.86 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=42.8
Q ss_pred cccHHHHHHHHHHHHHHcCC-CCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 8 GPGIGKVKHRYFCEEVSAGI-PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
.+..++++.++++. + ..++++++||||||.++..++.++|++++++|++++..+
T Consensus 69 ~~~~~~~l~~~i~~-----l~~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~ 123 (273)
T PLN02211 69 FDEYNKPLIDFLSS-----LPENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATML 123 (273)
T ss_pred HHHHHHHHHHHHHh-----cCCCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccC
Confidence 34445566666655 3 247899999999999999999999999999999987543
No 32
>PHA02857 monoglyceride lipase; Provisional
Probab=99.15 E-value=3.4e-10 Score=67.45 Aligned_cols=54 Identities=13% Similarity=0.200 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
.+|+.+.++.+. ...+..+++++||||||.+++.++.++|+.++++|+++|...
T Consensus 80 ~~d~~~~l~~~~-~~~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~ 133 (276)
T PHA02857 80 VRDVVQHVVTIK-STYPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVN 133 (276)
T ss_pred HHHHHHHHHHHH-hhCCCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccc
Confidence 344444444322 223456899999999999999999999999999999998654
No 33
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.15 E-value=2.3e-10 Score=66.48 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 11 IGKVKHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
...++.++++.+. +..++.++++++|||+||.+++.++.++|+.+.+++.+++...
T Consensus 75 ~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~ 131 (212)
T TIGR01840 75 EVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPY 131 (212)
T ss_pred cHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcc
Confidence 4567777887766 4556778999999999999999999999999999999987753
No 34
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.15 E-value=1.2e-10 Score=70.24 Aligned_cols=52 Identities=21% Similarity=0.365 Sum_probs=43.2
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
+.+++++.+++++ ++.++++++||||||.++..++.++|++++++|++++..
T Consensus 85 ~~~~~~~~~~~~~-----~~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~ 136 (286)
T PRK03204 85 DEHARVIGEFVDH-----LGLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWF 136 (286)
T ss_pred HHHHHHHHHHHHH-----hCCCCEEEEEECccHHHHHHHHHhChhheeEEEEECccc
Confidence 4456666666665 566789999999999999999999999999999988754
No 35
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.14 E-value=1.8e-10 Score=74.22 Aligned_cols=51 Identities=18% Similarity=0.055 Sum_probs=41.8
Q ss_pred cHHHHHH-HHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 10 GIGKVKH-RYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 10 ~~~~~~~-~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
.+++++. .+++. ++.++++++||||||.+++.++.++|++++++|+++++.
T Consensus 258 ~~a~~l~~~ll~~-----lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~ 309 (481)
T PLN03087 258 EHLEMIERSVLER-----YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPY 309 (481)
T ss_pred HHHHHHHHHHHHH-----cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCc
Confidence 3445552 45554 567899999999999999999999999999999999754
No 36
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.14 E-value=2.6e-10 Score=71.96 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=35.6
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
.+.++++++||||||.+++.++.++|++++++|++++..
T Consensus 173 l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~ 211 (402)
T PLN02894 173 KNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAG 211 (402)
T ss_pred cCCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCcc
Confidence 466789999999999999999999999999999998764
No 37
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.13 E-value=1.5e-10 Score=71.95 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=44.1
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHH-hCCCcccEEEEecccC
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSAL-TYPKKLAGVVALSCWL 65 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~-~~p~~~~~~v~~~~~~ 65 (75)
.+.+++++.++++. +..++++++||||||.+++.++. .+|++++++|++++..
T Consensus 138 ~~~~a~~l~~~l~~-----l~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~ 191 (360)
T PLN02679 138 METWAELILDFLEE-----VVQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAG 191 (360)
T ss_pred HHHHHHHHHHHHHH-----hcCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCcc
Confidence 35567777777776 46679999999999999998887 4799999999999754
No 38
>KOG1455|consensus
Probab=99.13 E-value=3e-10 Score=69.23 Aligned_cols=68 Identities=18% Similarity=0.061 Sum_probs=57.3
Q ss_pred CCCcccHHHHHHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCCCCC
Q psy7212 5 HEQGPGIGKVKHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKSFP 72 (75)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~ 72 (75)
..+.+..++|+..+++.++ +......+.++.||||||.+++.++.++|+..+++|+++|.....+..+
T Consensus 103 i~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~k 171 (313)
T KOG1455|consen 103 VPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTK 171 (313)
T ss_pred CCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccC
Confidence 3456677889999998776 4445667899999999999999999999999999999999988877654
No 39
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.12 E-value=1.5e-10 Score=70.29 Aligned_cols=52 Identities=23% Similarity=0.169 Sum_probs=43.5
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
+.+.+++..+++. ++.++++++||||||.+++.++.++|++++++|++++..
T Consensus 79 ~~~~~dl~~l~~~-----l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~ 130 (306)
T TIGR01249 79 WDLVADIEKLREK-----LGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFL 130 (306)
T ss_pred HHHHHHHHHHHHH-----cCCCCEEEEEECHHHHHHHHHHHHChHhhhhheeecccc
Confidence 3456666666665 566789999999999999999999999999999998754
No 40
>COG0400 Predicted esterase [General function prediction only]
Probab=99.10 E-value=3.3e-10 Score=66.24 Aligned_cols=60 Identities=35% Similarity=0.497 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCCC
Q psy7212 11 IGKVKHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKS 70 (75)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~~ 70 (75)
.++.+.++++... +++++.++++++|+|+||++++++..++|+.++++++++|..++...
T Consensus 79 ~~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~ 139 (207)
T COG0400 79 ETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE 139 (207)
T ss_pred HHHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc
Confidence 3445555555554 67888899999999999999999999999999999999999877753
No 41
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.09 E-value=3.7e-10 Score=65.43 Aligned_cols=61 Identities=26% Similarity=0.143 Sum_probs=51.1
Q ss_pred cHHHHHHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCCC
Q psy7212 10 GIGKVKHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKS 70 (75)
Q Consensus 10 ~~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~~ 70 (75)
...+|+.+.++.+. +..++.+|+.++|+|+||.+++.++.++|+.+++++..+|..++...
T Consensus 43 ~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~~~~~f~a~v~~~g~~d~~~~ 104 (213)
T PF00326_consen 43 ADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQHPDRFKAAVAGAGVSDLFSY 104 (213)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHHTCCGSSEEEEESE-SSTTCS
T ss_pred cchhhHHHHHHHHhccccccceeEEEEcccccccccchhhcccceeeeeeeccceecchhcc
Confidence 45778888888887 34567899999999999999999999999999999999998766543
No 42
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.08 E-value=7.8e-10 Score=66.74 Aligned_cols=56 Identities=14% Similarity=0.030 Sum_probs=45.7
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
+.+.+|+..+++.+... +.++++++||||||.+++.++.++|+.++++|+++|...
T Consensus 80 ~~~~~Dv~~ai~~L~~~--~~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~ 135 (266)
T TIGR03101 80 DVWKEDVAAAYRWLIEQ--GHPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVS 135 (266)
T ss_pred HHHHHHHHHHHHHHHhc--CCCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccc
Confidence 34567777777665433 357899999999999999999999999999999998664
No 43
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.07 E-value=5.3e-10 Score=66.02 Aligned_cols=38 Identities=29% Similarity=0.432 Sum_probs=34.7
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
..++++++||||||.+++.++.++|++++++|++++..
T Consensus 72 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~ 109 (256)
T PRK10349 72 APDKAIWLGWSLGGLVASQIALTHPERVQALVTVASSP 109 (256)
T ss_pred CCCCeEEEEECHHHHHHHHHHHhChHhhheEEEecCcc
Confidence 45789999999999999999999999999999998753
No 44
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.03 E-value=8.7e-10 Score=69.39 Aligned_cols=55 Identities=15% Similarity=0.014 Sum_probs=48.3
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
+.+.+++++.+++++ +..++++++|||+||.+++.++.++|++++++|++++...
T Consensus 179 s~~~~a~~l~~~i~~-----l~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~ 233 (383)
T PLN03084 179 TLDEYVSSLESLIDE-----LKSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLT 233 (383)
T ss_pred CHHHHHHHHHHHHHH-----hCCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCc
Confidence 456678888888887 5667899999999999999999999999999999998754
No 45
>PRK11460 putative hydrolase; Provisional
Probab=99.02 E-value=1.5e-09 Score=64.15 Aligned_cols=52 Identities=23% Similarity=0.203 Sum_probs=40.8
Q ss_pred HHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 15 KHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 15 ~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
+.++++.+. +.+++.++++++||||||.+++.++.++|+.+.+++.+++.++
T Consensus 87 l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~ 139 (232)
T PRK11460 87 FIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA 139 (232)
T ss_pred HHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc
Confidence 334444443 4456678899999999999999999999988888998887653
No 46
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.02 E-value=1.5e-09 Score=67.15 Aligned_cols=56 Identities=21% Similarity=0.295 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCC
Q psy7212 13 KVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 69 (75)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 69 (75)
+++.+.++.+.+. .+.++++++||||||.+++.++.++|++++++|+++++.++..
T Consensus 120 ~~~~~~v~~l~~~-~~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~ 175 (350)
T TIGR01836 120 GYIDKCVDYICRT-SKLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFET 175 (350)
T ss_pred HHHHHHHHHHHHH-hCCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCC
Confidence 3466666665533 3567899999999999999999999999999999999887643
No 47
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.02 E-value=1.2e-09 Score=67.38 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=44.1
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
+.+.+++++.++++. ++.++++++|||+||.+++.++.++|++++++|++++..
T Consensus 179 ~~~~~~~~~~~~~~~-----~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~ 232 (371)
T PRK14875 179 SLDELAAAVLAFLDA-----LGIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAG 232 (371)
T ss_pred CHHHHHHHHHHHHHh-----cCCccEEEEeechHHHHHHHHHHhCchheeEEEEECcCC
Confidence 344556666666655 566789999999999999999999999999999998763
No 48
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.01 E-value=2.8e-09 Score=64.20 Aligned_cols=42 Identities=31% Similarity=0.365 Sum_probs=37.6
Q ss_pred CCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCC
Q psy7212 26 GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 67 (75)
Q Consensus 26 ~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~ 67 (75)
.++.++++++||||||.+++.++.++|+.+++++++++....
T Consensus 134 ~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~ 175 (275)
T TIGR02821 134 PLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVAP 175 (275)
T ss_pred CCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccCc
Confidence 456678999999999999999999999999999999987643
No 49
>PLN02442 S-formylglutathione hydrolase
Probab=99.01 E-value=2.4e-09 Score=64.84 Aligned_cols=56 Identities=25% Similarity=0.247 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCC
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 67 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~ 67 (75)
..+++.+.++...+. ++.++++++||||||.+++.++.++|+.+++++.+++..++
T Consensus 125 ~~~~l~~~i~~~~~~-~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~ 180 (283)
T PLN02442 125 VVKELPKLLSDNFDQ-LDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIANP 180 (283)
T ss_pred HHHHHHHHHHHHHHh-cCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccCc
Confidence 445555566554332 46788999999999999999999999999999999988653
No 50
>KOG4178|consensus
Probab=98.98 E-value=1.3e-09 Score=67.03 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=49.2
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
+...++.|+..+++. +..++++++||++|+.+|..++..+|++++++|+++.+..
T Consensus 95 t~~~l~~di~~lld~-----Lg~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~ 149 (322)
T KOG4178|consen 95 TIDELVGDIVALLDH-----LGLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFP 149 (322)
T ss_pred eHHHHHHHHHHHHHH-----hccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCC
Confidence 455578888888888 6789999999999999999999999999999999998765
No 51
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=98.97 E-value=2.4e-09 Score=61.56 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=34.0
Q ss_pred CceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 30 DRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
++++++||||||.+++.++.++|++++++|++++...
T Consensus 65 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~ 101 (245)
T TIGR01738 65 DPAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPC 101 (245)
T ss_pred CCeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcc
Confidence 6899999999999999999999999999999987643
No 52
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=98.96 E-value=1.8e-09 Score=68.56 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
+.+++..++++..+...+.++.+|+|+||||..+++.+.++|+.+.+++.+|+.+
T Consensus 269 l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 269 VQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred HHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 4555556665543333456789999999999999999999999999999999875
No 53
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.94 E-value=3.3e-09 Score=75.95 Aligned_cols=53 Identities=25% Similarity=0.406 Sum_probs=44.6
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
.+.+++++.+++++ ++.++++++||||||.+++.++.++|++++++|++++..
T Consensus 1428 i~~~a~~l~~ll~~-----l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p 1480 (1655)
T PLN02980 1428 VELVADLLYKLIEH-----ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSP 1480 (1655)
T ss_pred HHHHHHHHHHHHHH-----hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCC
Confidence 44556667777766 566899999999999999999999999999999998754
No 54
>PLN02511 hydrolase
Probab=98.93 E-value=6.3e-09 Score=65.46 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCc--ccEEEEecccCC
Q psy7212 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKK--LAGVVALSCWLP 66 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~--~~~~v~~~~~~~ 66 (75)
....+|+.++++.+... .+..+++++||||||.+++.++.++|++ +.+.++++++.+
T Consensus 153 ~~~~~Dl~~~i~~l~~~-~~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~ 211 (388)
T PLN02511 153 ASFTGDLRQVVDHVAGR-YPSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFD 211 (388)
T ss_pred CCchHHHHHHHHHHHHH-CCCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcC
Confidence 46788999999886533 3456899999999999999999999986 888888887654
No 55
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.93 E-value=2.8e-09 Score=62.92 Aligned_cols=55 Identities=33% Similarity=0.352 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCC
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 67 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~ 67 (75)
+.+++...++.. .....++..++|+||||..|+.++.+||+.+.+++++||.+..
T Consensus 98 l~~el~p~i~~~--~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~ 152 (251)
T PF00756_consen 98 LTEELIPYIEAN--YRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDP 152 (251)
T ss_dssp HHTHHHHHHHHH--SSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESET
T ss_pred hhccchhHHHHh--cccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccc
Confidence 344555555543 3323334899999999999999999999999999999976443
No 56
>PRK11071 esterase YqiA; Provisional
Probab=98.90 E-value=8.1e-09 Score=59.48 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
..+++.++++. .+.++++++||||||.+++.++.++|. .+|+++|...
T Consensus 47 ~~~~l~~l~~~-----~~~~~~~lvG~S~Gg~~a~~~a~~~~~---~~vl~~~~~~ 94 (190)
T PRK11071 47 AAELLESLVLE-----HGGDPLGLVGSSLGGYYATWLSQCFML---PAVVVNPAVR 94 (190)
T ss_pred HHHHHHHHHHH-----cCCCCeEEEEECHHHHHHHHHHHHcCC---CEEEECCCCC
Confidence 34445555544 456789999999999999999999983 4688888765
No 57
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=98.88 E-value=5.4e-09 Score=64.55 Aligned_cols=60 Identities=20% Similarity=0.143 Sum_probs=43.8
Q ss_pred CcccHHHHHHHHHHHHHHc------------------CCC-CCceEEEEeChhHHHHHHHHHhCCC--------cccEEE
Q psy7212 7 QGPGIGKVKHRYFCEEVSA------------------GIP-SDRIVIGGFSQGGALALYSALTYPK--------KLAGVV 59 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~------------------~~~-~~~~~l~G~S~Gg~~a~~~a~~~p~--------~~~~~v 59 (75)
+.+.+++|+..+++...+. ..+ ..+++++||||||.+++.++.++++ .++++|
T Consensus 100 ~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~~~~~~~~~~~~~~~i~g~i 179 (332)
T TIGR01607 100 CFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLLELLGKSNENNDKLNIKGCI 179 (332)
T ss_pred hHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHHHHhccccccccccccceEE
Confidence 4455677788887765331 122 4579999999999999999876642 588999
Q ss_pred EecccCC
Q psy7212 60 ALSCWLP 66 (75)
Q Consensus 60 ~~~~~~~ 66 (75)
+++|++.
T Consensus 180 ~~s~~~~ 186 (332)
T TIGR01607 180 SLSGMIS 186 (332)
T ss_pred EeccceE
Confidence 9998754
No 58
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=98.87 E-value=1e-08 Score=65.64 Aligned_cols=56 Identities=13% Similarity=0.011 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCc----ccEEEEecccCC
Q psy7212 10 GIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKK----LAGVVALSCWLP 66 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~----~~~~v~~~~~~~ 66 (75)
...+++.++++...+. .+.++++|+||||||.++..++.++|+. ++++|.++++..
T Consensus 143 ~~~~~Lk~lIe~~~~~-~g~~kV~LVGHSMGGlva~~fl~~~p~~~~k~I~~~I~la~P~~ 202 (440)
T PLN02733 143 ETMDGLKKKLETVYKA-SGGKKVNIISHSMGGLLVKCFMSLHSDVFEKYVNSWIAIAAPFQ 202 (440)
T ss_pred HHHHHHHHHHHHHHHH-cCCCCEEEEEECHhHHHHHHHHHHCCHhHHhHhccEEEECCCCC
Confidence 3456777777766543 2457899999999999999999988863 788999988754
No 59
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=98.87 E-value=1.5e-08 Score=64.38 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=41.3
Q ss_pred HHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 16 HRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 16 ~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
..+++.+. ...++.+++.++|||+||.+++.++..+|++++++|++++...
T Consensus 250 ~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~ 301 (414)
T PRK05077 250 QAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVH 301 (414)
T ss_pred HHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccc
Confidence 34555543 2234778999999999999999999999999999999998764
No 60
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=98.87 E-value=2.3e-08 Score=60.21 Aligned_cols=58 Identities=26% Similarity=0.229 Sum_probs=44.2
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
.+...+|+.+.++.+.+..-+.++++++|||+||.+++.++.+ +.+++++|+++++..
T Consensus 78 ~~~~~~d~~~~~~~l~~~~~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~ 135 (274)
T TIGR03100 78 FEGIDADIAAAIDAFREAAPHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVR 135 (274)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccC
Confidence 3445678888887764331134679999999999999999765 457999999998864
No 61
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=98.86 E-value=1.1e-08 Score=60.46 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHH----HcCCCCCceEEEEeChhHHHHHHHHHhCC---CcccEEEEecccCC
Q psy7212 11 IGKVKHRYFCEEV----SAGIPSDRIVIGGFSQGGALALYSALTYP---KKLAGVVALSCWLP 66 (75)
Q Consensus 11 ~~~~~~~~~~~~~----~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p---~~~~~~v~~~~~~~ 66 (75)
..+.+.+.++.+. ....+.++++++||||||.++..++...+ +.++.+|.+++|..
T Consensus 62 q~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh~ 124 (225)
T PF07819_consen 62 QAEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPHR 124 (225)
T ss_pred HHHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCCC
Confidence 3444555554443 12346688999999999999888776543 46999999998764
No 62
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=98.85 E-value=2.1e-08 Score=59.17 Aligned_cols=55 Identities=24% Similarity=0.222 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 11 IGKVKHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
-...|..+++.+. +..++.+||++.|+|.||.++..++..+|+.|.++...++..
T Consensus 77 d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~ 132 (220)
T PF10503_consen 77 DVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVP 132 (220)
T ss_pred chhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccc
Confidence 3556777787776 677899999999999999999999999999999998888754
No 63
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.83 E-value=1.6e-08 Score=57.60 Aligned_cols=50 Identities=28% Similarity=0.398 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
++++..+++. +..++++++|||+||.++..++.++|++++++|++++...
T Consensus 75 ~~~~~~~~~~-----~~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~~ 124 (282)
T COG0596 75 ADDLAALLDA-----LGLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPP 124 (282)
T ss_pred HHHHHHHHHH-----hCCCceEEEEecccHHHHHHHHHhcchhhheeeEecCCCC
Confidence 6677777776 5666799999999999999999999999999999997654
No 64
>PRK10985 putative hydrolase; Provisional
Probab=98.83 E-value=2.6e-08 Score=61.21 Aligned_cols=56 Identities=14% Similarity=0.042 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCc--ccEEEEecccCCC
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKK--LAGVVALSCWLPM 67 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~--~~~~v~~~~~~~~ 67 (75)
..+|+..+++.+.+. .+.++++++||||||.++..++.++++. +.++|+++++...
T Consensus 113 ~~~D~~~~i~~l~~~-~~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~ 170 (324)
T PRK10985 113 ETEDARFFLRWLQRE-FGHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLML 170 (324)
T ss_pred chHHHHHHHHHHHHh-CCCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCH
Confidence 467888877766533 3556899999999999988888877543 8899999987653
No 65
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=98.82 E-value=2.8e-08 Score=62.82 Aligned_cols=60 Identities=28% Similarity=0.301 Sum_probs=44.9
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCC---CcccEEEEecccCCCC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYP---KKLAGVVALSCWLPMH 68 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p---~~~~~~v~~~~~~~~~ 68 (75)
+.+.+.+|+..+++.+... .+..+++++||||||.+++.++. +| +.++++|+.+|+....
T Consensus 186 ~~~~~~~Dl~~~l~~l~~~-~~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~ 248 (395)
T PLN02652 186 SLDYVVEDTEAFLEKIRSE-NPGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVK 248 (395)
T ss_pred CHHHHHHHHHHHHHHHHHh-CCCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccc
Confidence 3345678888888876533 23457999999999999997765 55 3799999999876443
No 66
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=98.82 E-value=2.9e-08 Score=53.84 Aligned_cols=52 Identities=29% Similarity=0.345 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccc
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCW 64 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~ 64 (75)
..++.++++...+...+.++++++|||+||.++..++.+. .+++++|+++++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~ 94 (145)
T PF12695_consen 43 ADAVERVLADIRAGYPDPDRIILIGHSMGGAIAANLAARN-PRVKAVVLLSPY 94 (145)
T ss_dssp SHHHHHHHHHHHHHHCTCCEEEEEEETHHHHHHHHHHHHS-TTESEEEEESES
T ss_pred hHHHHHHHHHHHhhcCCCCcEEEEEEccCcHHHHHHhhhc-cceeEEEEecCc
Confidence 3456666665432112778999999999999999999998 679999999994
No 67
>KOG1454|consensus
Probab=98.80 E-value=1.6e-08 Score=62.60 Aligned_cols=39 Identities=28% Similarity=0.362 Sum_probs=33.4
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCCCcccEEE---EecccCC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTYPKKLAGVV---ALSCWLP 66 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v---~~~~~~~ 66 (75)
..++++++|||+||.+|+.+|..+|+.|+++| ++++...
T Consensus 126 ~~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~ 167 (326)
T KOG1454|consen 126 FVEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVY 167 (326)
T ss_pred cCcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccc
Confidence 45679999999999999999999999999999 5555443
No 68
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.77 E-value=1.6e-08 Score=58.27 Aligned_cols=65 Identities=29% Similarity=0.357 Sum_probs=53.9
Q ss_pred cCCCCcccHHHHHHHHHHHHHHc----CCCCCceEEEEeChhHHHHHHHHHhCCC----cccEEEEecccCCC
Q psy7212 3 CAHEQGPGIGKVKHRYFCEEVSA----GIPSDRIVIGGFSQGGALALYSALTYPK----KLAGVVALSCWLPM 67 (75)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~G~S~Gg~~a~~~a~~~p~----~~~~~v~~~~~~~~ 67 (75)
+++...+...+|+.+.++.+.+. +.+.++++++|+|.||.+++.++.+..+ .++++++++|+.++
T Consensus 40 ~p~~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~ 112 (211)
T PF07859_consen 40 APEAPFPAALEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDL 112 (211)
T ss_dssp TTTSSTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSST
T ss_pred cccccccccccccccceeeeccccccccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccc
Confidence 46667788899999998887744 5778899999999999999999976433 48999999998766
No 69
>KOG1552|consensus
Probab=98.76 E-value=3.4e-08 Score=59.17 Aligned_cols=62 Identities=23% Similarity=0.173 Sum_probs=52.7
Q ss_pred CCcccHHHHHHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCCC
Q psy7212 6 EQGPGIGKVKHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKS 70 (75)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~~ 70 (75)
..+....+|+.++.+.+. +.+ +.+++++.|+|+|+..++.+|.++| ++++|+.+|.....+.
T Consensus 106 psE~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv 168 (258)
T KOG1552|consen 106 PSERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRV 168 (258)
T ss_pred cccccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhh
Confidence 355678899999999887 555 7789999999999999999999998 9999999998755443
No 70
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=98.75 E-value=7.2e-08 Score=59.87 Aligned_cols=61 Identities=18% Similarity=0.329 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCC--cccEEEEecccCCCCCCC
Q psy7212 11 IGKVKHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPK--KLAGVVALSCWLPMHKSF 71 (75)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~--~~~~~v~~~~~~~~~~~~ 71 (75)
..+.+.++++.+. ..+++.++++++|||+||.+|-..+.+... ++.+++.++|..|..+..
T Consensus 130 vg~~la~~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAgP~F~~~ 193 (331)
T PF00151_consen 130 VGRQLAKFLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAGPLFENN 193 (331)
T ss_dssp HHHHHHHHHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-TTTTTS
T ss_pred HHHHHHHHHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcccccccCC
Confidence 4556667777776 567888999999999999999999988877 899999999998877654
No 71
>PRK10566 esterase; Provisional
Probab=98.75 E-value=5.5e-08 Score=57.24 Aligned_cols=50 Identities=22% Similarity=0.169 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHcC-CCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEe
Q psy7212 12 GKVKHRYFCEEVSAG-IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVAL 61 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~-~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~ 61 (75)
.+++..+++.+.+.. ++.++++++|||+||.+++.++.++|+....+++.
T Consensus 88 ~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~ 138 (249)
T PRK10566 88 MQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLM 138 (249)
T ss_pred HHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEee
Confidence 355566666655333 56789999999999999999999888644444444
No 72
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.73 E-value=5.9e-08 Score=58.38 Aligned_cols=61 Identities=16% Similarity=0.036 Sum_probs=45.2
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCC-----cccEEEEecccCCCCC
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPK-----KLAGVVALSCWLPMHK 69 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-----~~~~~v~~~~~~~~~~ 69 (75)
....++++..++..+.+. ...+++.++||||||..++.|+..+.. .+..+|.+++++.-..
T Consensus 82 ~~~qa~wl~~vl~~L~~~-Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~ 147 (255)
T PF06028_consen 82 YKKQAKWLKKVLKYLKKK-YHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGIL 147 (255)
T ss_dssp HHHHHHHHHHHHHHHHHC-C--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTT
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccc
Confidence 445788888888877533 456799999999999999999987532 4899999999886553
No 73
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.70 E-value=1.2e-07 Score=57.29 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHHHHcCC-CCCceEEEEeChhHHHHHHHHHhCC---CcccEEEEecccCCC
Q psy7212 10 GIGKVKHRYFCEEVSAGI-PSDRIVIGGFSQGGALALYSALTYP---KKLAGVVALSCWLPM 67 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p---~~~~~~v~~~~~~~~ 67 (75)
++.+...+++++...... +..+++++|||.|++++++++.+++ .++.+++++-|.+..
T Consensus 63 ~QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~ 124 (266)
T PF10230_consen 63 DQIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIED 124 (266)
T ss_pred HHHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcccc
Confidence 344444555555543221 5678999999999999999999999 678899998887643
No 74
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=98.68 E-value=1.5e-07 Score=54.73 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=32.7
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC---CCcccEEEEecccCCC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTY---PKKLAGVVALSCWLPM 67 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~---p~~~~~~v~~~~~~~~ 67 (75)
+..++.|+|||+||.+|+.+|.+. -..+..+++++++.+.
T Consensus 64 ~~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~~~p~ 106 (229)
T PF00975_consen 64 PEGPYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDSPPPS 106 (229)
T ss_dssp SSSSEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESCSSTT
T ss_pred CCCCeeehccCccHHHHHHHHHHHHHhhhccCceEEecCCCCC
Confidence 434999999999999999999864 3458999999987654
No 75
>PRK13604 luxD acyl transferase; Provisional
Probab=98.65 E-value=1.5e-07 Score=57.93 Aligned_cols=55 Identities=5% Similarity=-0.183 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCC
Q psy7212 10 GIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 68 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~ 68 (75)
...+|+..+++++.+. +.+++.++||||||.+++..|... +++++|+.+|..++.
T Consensus 90 ~g~~Dl~aaid~lk~~--~~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~l~ 144 (307)
T PRK13604 90 IGKNSLLTVVDWLNTR--GINNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVNLR 144 (307)
T ss_pred ccHHHHHHHHHHHHhc--CCCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcccHH
Confidence 3468888888887554 346899999999999987666643 489999999987743
No 76
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=98.64 E-value=1.4e-07 Score=61.74 Aligned_cols=60 Identities=10% Similarity=-0.058 Sum_probs=50.4
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCC
Q psy7212 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 68 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~ 68 (75)
....+|+.++++.+.+......++.++|||+||.+++.++.++|..++++|..++..+..
T Consensus 76 ~~~~~D~~~~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~ 135 (550)
T TIGR00976 76 SDEAADGYDLVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLY 135 (550)
T ss_pred cccchHHHHHHHHHHhCCCCCCcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchh
Confidence 456789999998876554445799999999999999999999999999999988876544
No 77
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=98.63 E-value=1.5e-07 Score=59.42 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=44.8
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCC------cccEEEEecccCC
Q psy7212 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPK------KLAGVVALSCWLP 66 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~------~~~~~v~~~~~~~ 66 (75)
+.+...+.+.++...+.. .++++|+||||||.++..+....+. .|+++|.++++..
T Consensus 100 ~~~~~~lk~~ie~~~~~~--~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~ 161 (389)
T PF02450_consen 100 DEYFTKLKQLIEEAYKKN--GKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFG 161 (389)
T ss_pred HHHHHHHHHHHHHHHHhc--CCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCC
Confidence 456677888887765543 5799999999999999999988753 4899999998763
No 78
>KOG2564|consensus
Probab=98.61 E-value=6.9e-08 Score=58.88 Aligned_cols=53 Identities=28% Similarity=0.364 Sum_probs=40.6
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHh--CCCcccEEEEec
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALT--YPKKLAGVVALS 62 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~--~p~~~~~~v~~~ 62 (75)
..+.+.+|+..+++.++.. ...+++++||||||.+|.+.+.. -|. +.+++.++
T Consensus 125 S~eT~~KD~~~~i~~~fge--~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~viD 179 (343)
T KOG2564|consen 125 SLETMSKDFGAVIKELFGE--LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVID 179 (343)
T ss_pred CHHHHHHHHHHHHHHHhcc--CCCceEEEeccccchhhhhhhhhhhchh-hhceEEEE
Confidence 3456788999999886433 34579999999999999888765 365 77877765
No 79
>COG1647 Esterase/lipase [General function prediction only]
Probab=98.61 E-value=2.6e-07 Score=54.61 Aligned_cols=54 Identities=26% Similarity=0.344 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCC
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 69 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 69 (75)
-+++.+..+++...+ .++|.++|.||||.+++.+|.++| ++++|.++++.....
T Consensus 69 ~~~v~d~Y~~L~~~g--y~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~ 122 (243)
T COG1647 69 WEDVEDGYRDLKEAG--YDEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKS 122 (243)
T ss_pred HHHHHHHHHHHHHcC--CCeEEEEeecchhHHHHHHHhhCC--ccceeeecCCccccc
Confidence 334444444433343 468999999999999999999998 899999998876443
No 80
>PRK10162 acetyl esterase; Provisional
Probab=98.61 E-value=3.1e-07 Score=56.55 Aligned_cols=62 Identities=31% Similarity=0.224 Sum_probs=45.9
Q ss_pred CcccHHHHHHHHHHHHH----HcCCCCCceEEEEeChhHHHHHHHHHhC------CCcccEEEEecccCCCC
Q psy7212 7 QGPGIGKVKHRYFCEEV----SAGIPSDRIVIGGFSQGGALALYSALTY------PKKLAGVVALSCWLPMH 68 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~G~S~Gg~~a~~~a~~~------p~~~~~~v~~~~~~~~~ 68 (75)
..+...+|+...++++. +.+++.++++++|+|+||.+++.++.+. +..+++++++.|..+..
T Consensus 127 ~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~ 198 (318)
T PRK10162 127 RFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLR 198 (318)
T ss_pred CCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCC
Confidence 34455667666665543 3456778999999999999999998753 35689999999877653
No 81
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.60 E-value=8e-08 Score=55.50 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=32.5
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCCC
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKS 70 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~~ 70 (75)
...+.+.|+|.||||+.|..++.+++ +++ |+++|.+.+...
T Consensus 56 ~~~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~ 96 (187)
T PF05728_consen 56 LKPENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYEL 96 (187)
T ss_pred CCCCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHH
Confidence 34456999999999999999999986 344 899988765543
No 82
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.60 E-value=1.5e-07 Score=56.76 Aligned_cols=46 Identities=33% Similarity=0.384 Sum_probs=39.9
Q ss_pred HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCC
Q psy7212 24 SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 69 (75)
Q Consensus 24 ~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 69 (75)
++..+.++..++|||+||.+++.....+|+.+..++++||.+...+
T Consensus 131 ~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~n 176 (264)
T COG2819 131 RYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWHN 176 (264)
T ss_pred ccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhhCC
Confidence 3456677899999999999999999999999999999999775543
No 83
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.59 E-value=2.5e-07 Score=60.59 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeChhHHHHH----HHHHhC-CCcccEEEEecccCCCCC
Q psy7212 13 KVKHRYFCEEVSAGIPSDRIVIGGFSQGGALAL----YSALTY-PKKLAGVVALSCWLPMHK 69 (75)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~----~~a~~~-p~~~~~~v~~~~~~~~~~ 69 (75)
+.+.+.++.+.+. .+.++++++||||||.++. .++.++ |+++++++++++.+++..
T Consensus 246 ~~i~~al~~v~~~-~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~~ 306 (532)
T TIGR01838 246 DGVIAALEVVEAI-TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFSD 306 (532)
T ss_pred HHHHHHHHHHHHh-cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCCC
Confidence 3455566554422 4678999999999999852 345555 778999999999988764
No 84
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.57 E-value=3.6e-07 Score=50.75 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCC----cccEEEEecccCCCCC
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPK----KLAGVVALSCWLPMHK 69 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~----~~~~~v~~~~~~~~~~ 69 (75)
.+.+.+.++..... .+..+++++|||+||.+|..++.+.+. ....++.++++.....
T Consensus 11 ~~~i~~~~~~~~~~-~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p~~~~~ 71 (153)
T cd00741 11 ANLVLPLLKSALAQ-YPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPRVGNA 71 (153)
T ss_pred HHHHHHHHHHHHHH-CCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCCcccch
Confidence 34444444443221 356789999999999999998887654 5677888887765544
No 85
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.55 E-value=9.6e-08 Score=59.74 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=36.4
Q ss_pred CCCCceE-EEEeChhHHHHHHHHHhCCCcccEEEEecccCCC
Q psy7212 27 IPSDRIV-IGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 67 (75)
Q Consensus 27 ~~~~~~~-l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~ 67 (75)
++.+++. ++|-||||+.++.|+.+||+++++++.+++....
T Consensus 143 LGI~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~ 184 (368)
T COG2021 143 LGIKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARL 184 (368)
T ss_pred cCcceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccC
Confidence 6777865 9999999999999999999999999999986543
No 86
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.53 E-value=5.2e-07 Score=59.29 Aligned_cols=60 Identities=12% Similarity=-0.039 Sum_probs=45.8
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHH----HHHhCCC-cccEEEEecccCCCCC
Q psy7212 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALY----SALTYPK-KLAGVVALSCWLPMHK 69 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~----~a~~~p~-~~~~~v~~~~~~~~~~ 69 (75)
+.+.+.+.+.++.+.+. .+.++++++|||+||.++.. +++++++ +|+.++++.+++++..
T Consensus 268 dDYv~~i~~Ald~V~~~-tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~~ 332 (560)
T TIGR01839 268 STYVDALKEAVDAVRAI-TGSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDSTM 332 (560)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccCC
Confidence 33445556666554433 35678999999999999986 7888885 7999999999998764
No 87
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.51 E-value=2.1e-07 Score=53.04 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=31.8
Q ss_pred CceEEEEeChhHHHHHHHH-HhCCCcccEEEEecccCC
Q psy7212 30 DRIVIGGFSQGGALALYSA-LTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a-~~~p~~~~~~v~~~~~~~ 66 (75)
++++++|||+|+..++.++ ...+.+++++++++|+-.
T Consensus 55 ~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~ 92 (171)
T PF06821_consen 55 EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDP 92 (171)
T ss_dssp TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SC
T ss_pred CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCc
Confidence 5699999999999999999 777889999999999865
No 88
>PLN00021 chlorophyllase
Probab=98.51 E-value=7.5e-07 Score=54.99 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=34.0
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhCCC-----cccEEEEecccCC
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALTYPK-----KLAGVVALSCWLP 66 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~-----~~~~~v~~~~~~~ 66 (75)
.+.++++++|||+||.+++.++.++++ +++++|.+++...
T Consensus 123 ~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g 167 (313)
T PLN00021 123 PDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDG 167 (313)
T ss_pred cChhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccccc
Confidence 345789999999999999999998874 5899999998653
No 89
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=98.50 E-value=7.2e-07 Score=52.31 Aligned_cols=55 Identities=27% Similarity=0.274 Sum_probs=39.6
Q ss_pred HHHHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCC
Q psy7212 13 KVKHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 68 (75)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~ 68 (75)
+.+.+.++.+. ....+.++|.|+|.|.||-+|+.+|.++| .++++|.++|.....
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~ 59 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVF 59 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEe
Confidence 34555666555 33456689999999999999999999999 699999999865443
No 90
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.50 E-value=4.1e-07 Score=62.95 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=41.9
Q ss_pred ccHHHHHHHHHHHHHH-cCCCCCceEEEEeChhHHHHHHHHHhC-CCcccEEEEecccCCCC
Q psy7212 9 PGIGKVKHRYFCEEVS-AGIPSDRIVIGGFSQGGALALYSALTY-PKKLAGVVALSCWLPMH 68 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~S~Gg~~a~~~a~~~-p~~~~~~v~~~~~~~~~ 68 (75)
..+.+++..+++.+.. .....++++++||||||.+++.++..+ |++++++|+++++.++.
T Consensus 119 ~~l~~~i~~l~~~l~~v~~~~~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~ 180 (994)
T PRK07868 119 RNLADHVVALSEAIDTVKDVTGRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTL 180 (994)
T ss_pred CCHHHHHHHHHHHHHHHHHhhCCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccC
Confidence 3455666555544311 011235899999999999999988755 56899999999887654
No 91
>KOG2112|consensus
Probab=98.47 E-value=5.2e-07 Score=52.67 Aligned_cols=58 Identities=59% Similarity=0.867 Sum_probs=51.9
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
...++.+..+++++...+++..++.+.|+||||.++++.+..+|..+.+....+++.+
T Consensus 72 ~~aa~~i~~Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p 129 (206)
T KOG2112|consen 72 HRAADNIANLIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLP 129 (206)
T ss_pred HHHHHHHHHHHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccc
Confidence 3456778889998889999999999999999999999999999988999999988877
No 92
>COG4099 Predicted peptidase [General function prediction only]
Probab=98.44 E-value=1e-06 Score=54.34 Aligned_cols=56 Identities=21% Similarity=0.130 Sum_probs=45.7
Q ss_pred HHHHHHHHHH-HHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 11 IGKVKHRYFC-EEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 11 ~~~~~~~~~~-~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
+.....++++ .+. .++++..||.++|.|+||..++.++.++|+.+.+.+.+++..+
T Consensus 248 ~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d 305 (387)
T COG4099 248 YLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGD 305 (387)
T ss_pred hHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCc
Confidence 3344445554 333 5778889999999999999999999999999999999998765
No 93
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=98.38 E-value=7.5e-07 Score=56.72 Aligned_cols=52 Identities=25% Similarity=0.185 Sum_probs=39.3
Q ss_pred HHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 15 KHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 15 ~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
..++++++. ...++..+|.++|.|+||+.|.++|..++++++++|.+++...
T Consensus 245 ~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh 297 (411)
T PF06500_consen 245 HQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVH 297 (411)
T ss_dssp HHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---S
T ss_pred HHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHh
Confidence 345555554 3446778999999999999999999999999999999998753
No 94
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.38 E-value=8.3e-07 Score=52.99 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHH-c--CCCCCceEEEEeChhHHHHHHHHHhCC---CcccEEEEecccCC
Q psy7212 11 IGKVKHRYFCEEVS-A--GIPSDRIVIGGFSQGGALALYSALTYP---KKLAGVVALSCWLP 66 (75)
Q Consensus 11 ~~~~~~~~~~~~~~-~--~~~~~~~~l~G~S~Gg~~a~~~a~~~p---~~~~~~v~~~~~~~ 66 (75)
...++..+.+.+.. . -...+++.++||||||.+|.++|.+.. ..+..+.++++..|
T Consensus 52 ~~~di~~Lad~la~el~~~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP 113 (244)
T COG3208 52 LLTDIESLADELANELLPPLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAP 113 (244)
T ss_pred ccccHHHHHHHHHHHhccccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCC
Confidence 34555555555441 1 134568999999999999999998753 23667777776655
No 95
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.37 E-value=2e-06 Score=52.70 Aligned_cols=57 Identities=25% Similarity=0.346 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 10 GIGKVKHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 10 ~~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
.-+.+|.++++.+. +.+++.++|++.|.|-||.|+..++..+|+.+.++..+++..+
T Consensus 123 ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~ 180 (312)
T COG3509 123 DDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLA 180 (312)
T ss_pred cHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccC
Confidence 34677888888887 7888999999999999999999999999999999999888763
No 96
>COG0627 Predicted esterase [General function prediction only]
Probab=98.36 E-value=8.1e-07 Score=54.98 Aligned_cols=60 Identities=23% Similarity=0.190 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCC
Q psy7212 10 GIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 69 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 69 (75)
.+.+++...+++.....-+.++..++||||||.-|+.+|.++|++++.+..++|.+....
T Consensus 132 fl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~ 191 (316)
T COG0627 132 FLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSS 191 (316)
T ss_pred HHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccc
Confidence 345556655544321110013789999999999999999999999999999999887763
No 97
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=98.32 E-value=1.8e-06 Score=46.96 Aligned_cols=23 Identities=52% Similarity=0.648 Sum_probs=20.0
Q ss_pred CCCceEEEEeChhHHHHHHHHHh
Q psy7212 28 PSDRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
+..++++.|||+||.+|..++..
T Consensus 62 ~~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 62 PDYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp TTSEEEEEEETHHHHHHHHHHHH
T ss_pred cCccchhhccchHHHHHHHHHHh
Confidence 45789999999999999888765
No 98
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.30 E-value=3.1e-06 Score=49.08 Aligned_cols=58 Identities=21% Similarity=0.160 Sum_probs=46.6
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCC----cccEEEEecccC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPK----KLAGVVALSCWL 65 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~----~~~~~v~~~~~~ 65 (75)
+-++.+.|+.++++...+. ++.++++|+|+|+|+-+......+.|. +++.++++++..
T Consensus 46 tP~~~a~Dl~~~i~~y~~~-w~~~~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~ 107 (192)
T PF06057_consen 46 TPEQTAADLARIIRHYRAR-WGRKRVVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPST 107 (192)
T ss_pred CHHHHHHHHHHHHHHHHHH-hCCceEEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCC
Confidence 4456788999999876644 467899999999999988888888874 688899988754
No 99
>PRK05855 short chain dehydrogenase; Validated
Probab=98.30 E-value=1.1e-06 Score=56.90 Aligned_cols=52 Identities=8% Similarity=0.017 Sum_probs=37.1
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCC-ceEEEEeChhHHHHHHHHHhC--CCcccEEEEecc
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSD-RIVIGGFSQGGALALYSALTY--PKKLAGVVALSC 63 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~G~S~Gg~~a~~~a~~~--p~~~~~~v~~~~ 63 (75)
+.+.+++|+..+++. ++.+ +++++||||||.+++.++.+. +..+..++.+++
T Consensus 75 ~~~~~a~dl~~~i~~-----l~~~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~ 129 (582)
T PRK05855 75 TLARLADDFAAVIDA-----VSPDRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSG 129 (582)
T ss_pred CHHHHHHHHHHHHHH-----hCCCCcEEEEecChHHHHHHHHHhCccchhhhhhheeccC
Confidence 355678888888887 3444 499999999999998887763 344555555543
No 100
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.29 E-value=6.4e-06 Score=49.09 Aligned_cols=57 Identities=25% Similarity=0.230 Sum_probs=47.2
Q ss_pred ccHHHHHHHHHHHHHHcC-CCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 9 PGIGKVKHRYFCEEVSAG-IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
.....|+...++.+.+.. .+.++|.++|+||||.+++.++.+.| .+++.+++-+...
T Consensus 90 ~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~ 147 (236)
T COG0412 90 AEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLI 147 (236)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCC
Confidence 456778888888876444 56788999999999999999999988 6899988887664
No 101
>KOG2382|consensus
Probab=98.29 E-value=1.9e-06 Score=53.21 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=44.6
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCceEEEEeChhH-HHHHHHHHhCCCcccEEEEecccC
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGG-ALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg-~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
...+++|+..+++..... ....++.++|||||| .+++..+...|+.+.++|+..-..
T Consensus 102 ~~~ma~dv~~Fi~~v~~~-~~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP 159 (315)
T KOG2382|consen 102 YEAMAEDVKLFIDGVGGS-TRLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISP 159 (315)
T ss_pred HHHHHHHHHHHHHHcccc-cccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCC
Confidence 456789999999874211 135689999999999 888888889999999988887443
No 102
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=98.27 E-value=5.3e-06 Score=50.09 Aligned_cols=59 Identities=19% Similarity=0.140 Sum_probs=45.7
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCC-----cccEEEEecccCC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPK-----KLAGVVALSCWLP 66 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-----~~~~~v~~~~~~~ 66 (75)
....+..++..++..+.+ ..+.+++.++||||||.-..+|+..+.+ .++.+|.+++++.
T Consensus 114 s~~~~s~wlk~~msyL~~-~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 114 SGLDQSKWLKKAMSYLQK-HYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred chhhHHHHHHHHHHHHHH-hcCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 344557788888876652 2456799999999999999999887632 4899999999887
No 103
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=98.26 E-value=6.6e-07 Score=54.76 Aligned_cols=57 Identities=25% Similarity=0.314 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 10 GIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
.+.+++...++......-..+..+|.|.|+||.+++..+.+||+.|..++..||.+.
T Consensus 157 ~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~ 213 (299)
T COG2382 157 FLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFW 213 (299)
T ss_pred HHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccc
Confidence 344455555554332222346689999999999999999999999999999998664
No 104
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=98.25 E-value=7.3e-06 Score=50.09 Aligned_cols=66 Identities=27% Similarity=0.208 Sum_probs=51.4
Q ss_pred CCCCcccHHHHHHHHHHHHH----HcCCCCCceEEEEeChhHHHHHHHHHhCCC----cccEEEEecccCCCCC
Q psy7212 4 AHEQGPGIGKVKHRYFCEEV----SAGIPSDRIVIGGFSQGGALALYSALTYPK----KLAGVVALSCWLPMHK 69 (75)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~----~~~~~v~~~~~~~~~~ 69 (75)
++...+...+|+.+.++.+. ..+.+.++++++|+|.||.++..++.+-.+ .....++++|+.+...
T Consensus 122 Pe~~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~ 195 (312)
T COG0657 122 PEHPFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS 195 (312)
T ss_pred CCCCCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc
Confidence 44566777777777776655 246778999999999999999999877543 4789999999987765
No 105
>PLN02872 triacylglycerol lipase
Probab=98.20 E-value=9.8e-07 Score=56.00 Aligned_cols=52 Identities=21% Similarity=0.158 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCC---cccEEEEecccCCC
Q psy7212 13 KVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPK---KLAGVVALSCWLPM 67 (75)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~---~~~~~v~~~~~~~~ 67 (75)
.|+.++++.+.+. ..++++++||||||.+++.++ .+|+ .++.+++++|...+
T Consensus 145 ~Dl~a~id~i~~~--~~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~~~ 199 (395)
T PLN02872 145 YDLAEMIHYVYSI--TNSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPISYL 199 (395)
T ss_pred HHHHHHHHHHHhc--cCCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchhhh
Confidence 7899999887543 236899999999999998544 5675 57888888876543
No 106
>KOG2931|consensus
Probab=98.20 E-value=5e-06 Score=51.08 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=49.4
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 6 EQGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
...+.+++++..++++ +..+.++=+|-..|+++..++|..||++|.++|++++..
T Consensus 103 Psmd~LAd~l~~VL~~-----f~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~ 157 (326)
T KOG2931|consen 103 PSMDDLADMLPEVLDH-----FGLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDP 157 (326)
T ss_pred CCHHHHHHHHHHHHHh-----cCcceEEEecccccHHHHHHHHhcChhheeEEEEEecCC
Confidence 4567788999999988 788899999999999999999999999999999999754
No 107
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.20 E-value=1.2e-05 Score=50.86 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=48.2
Q ss_pred CCCcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCC-----CcccEEEEecccCCCC
Q psy7212 5 HEQGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYP-----KKLAGVVALSCWLPMH 68 (75)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-----~~~~~~v~~~~~~~~~ 68 (75)
....+.+..++.+..+.+.+.. +.++|+|+|-|.||.+++.+.+... ...+++|++|||..+.
T Consensus 171 ~~~yPtQL~qlv~~Y~~Lv~~~-G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 171 GHKYPTQLRQLVATYDYLVESE-GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred CCcCchHHHHHHHHHHHHHhcc-CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 4466677777888887776332 4578999999999999988876421 2368999999999776
No 108
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=98.18 E-value=6.6e-06 Score=52.51 Aligned_cols=56 Identities=11% Similarity=0.026 Sum_probs=42.0
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhC-----CCcccEEEEecccCCCCCC
Q psy7212 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTY-----PKKLAGVVALSCWLPMHKS 70 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~-----p~~~~~~v~~~~~~~~~~~ 70 (75)
+.+++.+.++++. ++.+ ++++|+||||..++.+++.+ |.+++.++++.+++++...
T Consensus 153 dDYi~~l~~~i~~-----~G~~-v~l~GvCqgG~~~laa~Al~a~~~~p~~~~sltlm~~PID~~~~ 213 (406)
T TIGR01849 153 EDYIDYLIEFIRF-----LGPD-IHVIAVCQPAVPVLAAVALMAENEPPAQPRSMTLMGGPIDARAS 213 (406)
T ss_pred HHHHHHHHHHHHH-----hCCC-CcEEEEchhhHHHHHHHHHHHhcCCCCCcceEEEEecCccCCCC
Confidence 4445556666655 4544 99999999999977666554 6679999999999987753
No 109
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=98.18 E-value=1.2e-05 Score=49.57 Aligned_cols=60 Identities=13% Similarity=-0.036 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHHHHHHcC---CCCCceEEEEeChhHHHHHHHHHhCC-----CcccEEEEecccCCCC
Q psy7212 9 PGIGKVKHRYFCEEVSAG---IPSDRIVIGGFSQGGALALYSALTYP-----KKLAGVVALSCWLPMH 68 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~---~~~~~~~l~G~S~Gg~~a~~~a~~~p-----~~~~~~v~~~~~~~~~ 68 (75)
+.-++||.++++.+.... ...++|+|+|||.|..-+++|+.+.. ..|++.|+-+|..+..
T Consensus 84 ~~D~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDRE 151 (303)
T PF08538_consen 84 DRDVEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDRE 151 (303)
T ss_dssp HHHHHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TT
T ss_pred hhHHHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChh
Confidence 445778888888877441 25678999999999999999998752 5699999999866543
No 110
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=98.17 E-value=5.5e-06 Score=48.21 Aligned_cols=53 Identities=19% Similarity=0.180 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHHHc-CCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecc
Q psy7212 10 GIGKVKHRYFCEEVSA-GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 63 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~ 63 (75)
...+++...++.+... ..+.+++.++|+|+||.+++.++.+. ..+++.|..-|
T Consensus 77 ~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg 130 (218)
T PF01738_consen 77 QVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYG 130 (218)
T ss_dssp HHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-
T ss_pred HHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcC
Confidence 3456666667766522 24567999999999999999999887 57899998887
No 111
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=98.17 E-value=9.2e-06 Score=48.18 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=29.5
Q ss_pred CceEEEEeChhHHHHHHHHHhCC----CcccEEEEecccC
Q psy7212 30 DRIVIGGFSQGGALALYSALTYP----KKLAGVVALSCWL 65 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~~p----~~~~~~v~~~~~~ 65 (75)
.++.+.|||.||++|.+.+...+ +++.++...+++-
T Consensus 84 ~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgPG 123 (224)
T PF11187_consen 84 GKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGPG 123 (224)
T ss_pred CCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCCC
Confidence 35999999999999999988743 4688888888764
No 112
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=98.16 E-value=3e-06 Score=51.73 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=43.5
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 6 EQGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
.+.+.+++++..++++ ++.+.++-+|-..||++..++|.++|+++.++|++++..
T Consensus 80 Psmd~LAe~l~~Vl~~-----f~lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~ 134 (283)
T PF03096_consen 80 PSMDQLAEMLPEVLDH-----FGLKSVIGFGVGAGANILARFALKHPERVLGLILVNPTC 134 (283)
T ss_dssp --HHHHHCTHHHHHHH-----HT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---
T ss_pred cCHHHHHHHHHHHHHh-----CCccEEEEEeeccchhhhhhccccCccceeEEEEEecCC
Confidence 3556778888888888 578899999999999999999999999999999999754
No 113
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.15 E-value=6e-06 Score=51.43 Aligned_cols=55 Identities=22% Similarity=0.220 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCC--CcccEEEEecccCC
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYP--KKLAGVVALSCWLP 66 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p--~~~~~~v~~~~~~~ 66 (75)
..+.+...++..+.. .+.+++.++||||||..+.+++..++ ..++.++.++++-.
T Consensus 109 ~~~ql~~~V~~~l~~-~ga~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~~ 165 (336)
T COG1075 109 RGEQLFAYVDEVLAK-TGAKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPHH 165 (336)
T ss_pred cHHHHHHHHHHHHhh-cCCCceEEEeecccchhhHHHHhhcCccceEEEEEEeccCCC
Confidence 344555555554433 35588999999999999999999888 78999999998653
No 114
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=98.13 E-value=9.8e-06 Score=47.57 Aligned_cols=40 Identities=15% Similarity=-0.016 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhC
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
-.|+.+..+..++..-+.++++|+|||+|+.+..++..++
T Consensus 77 y~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 77 YSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHH
Confidence 4567777777664434557899999999999999998765
No 115
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.11 E-value=1.8e-05 Score=47.83 Aligned_cols=39 Identities=31% Similarity=0.369 Sum_probs=33.8
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC---CCcccEEEEecccCC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTY---PKKLAGVVALSCWLP 66 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~---p~~~~~~v~~~~~~~ 66 (75)
+..+++++|||+||.+|...|.+. .+.|..++++++..+
T Consensus 63 P~GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 63 PEGPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred CCCCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 556899999999999999999874 346999999998877
No 116
>KOG4391|consensus
Probab=98.11 E-value=7.2e-07 Score=53.04 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=54.0
Q ss_pred CCcccHHHHHHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCC
Q psy7212 6 EQGPGIGKVKHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 68 (75)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~ 68 (75)
..++++.-|-...++.+. +...+..++++.|.|+||.+|..+|.+..+++.++|+-+++...+
T Consensus 124 psE~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp 187 (300)
T KOG4391|consen 124 PSEEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIP 187 (300)
T ss_pred ccccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccch
Confidence 356677778888888876 566788899999999999999999999999999999999987663
No 117
>KOG1838|consensus
Probab=98.11 E-value=2.1e-05 Score=50.14 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=45.8
Q ss_pred CcCCCCcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCC---cccEEEEecccC
Q psy7212 2 VCAHEQGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPK---KLAGVVALSCWL 65 (75)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~---~~~~~v~~~~~~ 65 (75)
+++.-...+..+|+.++++.+.+. .+..+...+|+||||++.+.|..+..+ ...++.+.+||-
T Consensus 171 tTpr~f~ag~t~Dl~~~v~~i~~~-~P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd 236 (409)
T KOG1838|consen 171 TTPRLFTAGWTEDLREVVNHIKKR-YPQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWD 236 (409)
T ss_pred CCCceeecCCHHHHHHHHHHHHHh-CCCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccch
Confidence 344445566789999999887644 477899999999999999999987533 244555555543
No 118
>PRK04940 hypothetical protein; Provisional
Probab=98.09 E-value=4e-06 Score=48.23 Aligned_cols=37 Identities=22% Similarity=0.132 Sum_probs=31.2
Q ss_pred CceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCC
Q psy7212 30 DRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 69 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 69 (75)
+++.++|.|+||+.|..++.++. -..|+++|.+.+..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g---~~aVLiNPAv~P~~ 96 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG---IRQVIFNPNLFPEE 96 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC---CCEEEECCCCChHH
Confidence 57999999999999999999986 36788898876644
No 119
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.06 E-value=9.4e-06 Score=47.74 Aligned_cols=24 Identities=46% Similarity=0.663 Sum_probs=20.5
Q ss_pred CCCCceEEEEeChhHHHHHHHHHh
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
.+..++++.|||+||.+|..++..
T Consensus 125 ~p~~~i~vtGHSLGGaiA~l~a~~ 148 (229)
T cd00519 125 YPDYKIIVTGHSLGGALASLLALD 148 (229)
T ss_pred CCCceEEEEccCHHHHHHHHHHHH
Confidence 356789999999999999888765
No 120
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=98.05 E-value=3.9e-06 Score=53.05 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=27.5
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
+.+++.++|||+||..+...+.+. .++++.|++++|..
T Consensus 226 D~~~i~~~GHSFGGATa~~~l~~d-~r~~~~I~LD~W~~ 263 (379)
T PF03403_consen 226 DLSRIGLAGHSFGGATALQALRQD-TRFKAGILLDPWMF 263 (379)
T ss_dssp EEEEEEEEEETHHHHHHHHHHHH--TT--EEEEES---T
T ss_pred chhheeeeecCchHHHHHHHHhhc-cCcceEEEeCCccc
Confidence 356899999999999999877766 57999999999864
No 121
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.05 E-value=4.2e-05 Score=43.91 Aligned_cols=55 Identities=18% Similarity=0.068 Sum_probs=41.2
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
.+...+++.++-+++.. . .++++|++||+|+..+..++.+...+|+++.+++|+-
T Consensus 40 ~P~~~dWi~~l~~~v~a--~-~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd 94 (181)
T COG3545 40 APVLDDWIARLEKEVNA--A-EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPD 94 (181)
T ss_pred CCCHHHHHHHHHHHHhc--c-CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCC
Confidence 34455555555544321 1 3459999999999999999998777999999999875
No 122
>PLN02633 palmitoyl protein thioesterase family protein
Probab=98.01 E-value=3.7e-05 Score=47.59 Aligned_cols=53 Identities=13% Similarity=-0.069 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHH-cCCCCCceEEEEeChhHHHHHHHHHhCCC--cccEEEEecccC
Q psy7212 12 GKVKHRYFCEEVS-AGIPSDRIVIGGFSQGGALALYSALTYPK--KLAGVVALSCWL 65 (75)
Q Consensus 12 ~~~~~~~~~~~~~-~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~--~~~~~v~~~~~~ 65 (75)
.+.+..+.+++.. ..+. +-++++|||+||.++..++.+.|+ +|+.+|.++++-
T Consensus 76 ~~Qve~vce~l~~~~~l~-~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlggph 131 (314)
T PLN02633 76 TQQAEIACEKVKQMKELS-QGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAGPH 131 (314)
T ss_pred HHHHHHHHHHHhhchhhh-CcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecCCC
Confidence 4445555554432 2222 459999999999999999999987 599999999864
No 123
>PLN02606 palmitoyl-protein thioesterase
Probab=97.99 E-value=4.3e-05 Score=47.17 Aligned_cols=54 Identities=13% Similarity=-0.087 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHH-cCCCCCceEEEEeChhHHHHHHHHHhCCC--cccEEEEecccCC
Q psy7212 12 GKVKHRYFCEEVS-AGIPSDRIVIGGFSQGGALALYSALTYPK--KLAGVVALSCWLP 66 (75)
Q Consensus 12 ~~~~~~~~~~~~~-~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~--~~~~~v~~~~~~~ 66 (75)
.+.+..+.+++.. ..+. +-++++|+|+||.++..++.+.|+ +|+.+|.++++-.
T Consensus 77 ~~Qv~~vce~l~~~~~L~-~G~naIGfSQGglflRa~ierc~~~p~V~nlISlggph~ 133 (306)
T PLN02606 77 RQQASIACEKIKQMKELS-EGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGGPHA 133 (306)
T ss_pred HHHHHHHHHHHhcchhhc-CceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecCCcC
Confidence 4555555555542 2222 459999999999999999999987 5999999998643
No 124
>PRK10115 protease 2; Provisional
Probab=97.98 E-value=2.2e-05 Score=52.91 Aligned_cols=60 Identities=17% Similarity=0.015 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHHHcC-CCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCC
Q psy7212 10 GIGKVKHRYFCEEVSAG-IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 69 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 69 (75)
...+|+.+.++.+.+.+ .+.+++.+.|-|.||+++...+.++|+.++++|+..|..++..
T Consensus 503 ~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~ 563 (686)
T PRK10115 503 NTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVT 563 (686)
T ss_pred CcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhh
Confidence 45678888888887555 4678999999999999999999999999999999999887653
No 125
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.97 E-value=3.3e-05 Score=45.04 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=43.9
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 6 EQGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
+.--+-.+|....++++....-+.....+.|+|+|+++++.++.+.|+ ....+.+.+...
T Consensus 79 D~GiGE~~Da~aaldW~~~~hp~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~ 138 (210)
T COG2945 79 DNGIGELEDAAAALDWLQARHPDSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPIN 138 (210)
T ss_pred cCCcchHHHHHHHHHHHHhhCCCchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCC
Confidence 344456788888888876554333446899999999999999999986 566666666554
No 126
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=97.96 E-value=2.6e-05 Score=48.42 Aligned_cols=53 Identities=28% Similarity=0.179 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 12 GKVKHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
..|....++.+. ...++.+++.+.|.|+||.+++..+...| +|++++...|++
T Consensus 156 ~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l 209 (320)
T PF05448_consen 156 YLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAADVPFL 209 (320)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEEESESS
T ss_pred HHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEecCCCc
Confidence 456666666655 45567889999999999999999999876 599999888765
No 127
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=97.95 E-value=4.3e-05 Score=45.27 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhC
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
++++.++++..+.. -+. ++-|+||||||.++..+....
T Consensus 59 ~~~l~~fI~~Vl~~-TGa-kVDIVgHS~G~~iaR~yi~~~ 96 (219)
T PF01674_consen 59 AKQLRAFIDAVLAY-TGA-KVDIVGHSMGGTIARYYIKGG 96 (219)
T ss_dssp HHHHHHHHHHHHHH-HT---EEEEEETCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh-hCC-EEEEEEcCCcCHHHHHHHHHc
Confidence 46777888777644 245 999999999999998888643
No 128
>KOG3724|consensus
Probab=97.95 E-value=9.1e-06 Score=55.37 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=27.4
Q ss_pred CCceEEEEeChhHHHHHHHHHh---CCCcccEEEEecccC
Q psy7212 29 SDRIVIGGFSQGGALALYSALT---YPKKLAGVVALSCWL 65 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~a~~~a~~---~p~~~~~~v~~~~~~ 65 (75)
+..++++||||||.+|...+.. .++.|.-++..+++-
T Consensus 181 P~sVILVGHSMGGiVAra~~tlkn~~~~sVntIITlssPH 220 (973)
T KOG3724|consen 181 PHSVILVGHSMGGIVARATLTLKNEVQGSVNTIITLSSPH 220 (973)
T ss_pred CceEEEEeccchhHHHHHHHhhhhhccchhhhhhhhcCcc
Confidence 4569999999999998766542 345677777777654
No 129
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=97.94 E-value=8.1e-05 Score=42.81 Aligned_cols=55 Identities=15% Similarity=0.059 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
-..++..+++.+.....+..++.++|||+|+.++-..+.+.+..+..+|+++++-
T Consensus 90 ga~~L~~f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSPG 144 (177)
T PF06259_consen 90 GAPRLARFLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSPG 144 (177)
T ss_pred HHHHHHHHHHHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCCC
Confidence 3566777777765333355789999999999998877777677889999888653
No 130
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=97.94 E-value=2.7e-05 Score=47.16 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=33.9
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC-----CCcccEEEEecccC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTY-----PKKLAGVVALSCWL 65 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~-----p~~~~~~v~~~~~~ 65 (75)
+..++.++|||-||-++..++..+ +.+++++++++|.-
T Consensus 89 D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 89 DFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVD 131 (259)
T ss_pred cccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEecccc
Confidence 667999999999999999999887 55899999999865
No 131
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=97.93 E-value=6.4e-05 Score=49.40 Aligned_cols=67 Identities=15% Similarity=0.075 Sum_probs=51.1
Q ss_pred cCCCCcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCC
Q psy7212 3 CAHEQGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 69 (75)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 69 (75)
++..+..........+++.+.+..-+..|.+++|.++||..++.+|+.+|+.+.-+|+-+++++...
T Consensus 113 ~pgQTl~DV~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsywa 179 (581)
T PF11339_consen 113 EPGQTLEDVMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSYWA 179 (581)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCccccc
Confidence 3444555555666677776654443444899999999999999999999999999999888876554
No 132
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=97.93 E-value=5.9e-05 Score=53.18 Aligned_cols=55 Identities=22% Similarity=0.222 Sum_probs=39.8
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHh---CCCcccEEEEecccC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALT---YPKKLAGVVALSCWL 65 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~---~p~~~~~~v~~~~~~ 65 (75)
+.+.+++++.+.++.. ....+++++|||+||.++..++.+ .++++..++++++..
T Consensus 1114 ~l~~la~~~~~~i~~~----~~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~~~ 1171 (1296)
T PRK10252 1114 SLDEVCEAHLATLLEQ----QPHGPYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDTWP 1171 (1296)
T ss_pred CHHHHHHHHHHHHHhh----CCCCCEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecCCC
Confidence 3344555555555442 233589999999999999999986 477899999988754
No 133
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=97.93 E-value=3.8e-05 Score=45.17 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=16.7
Q ss_pred CceEEEEeChhHHHHHHHHH
Q psy7212 30 DRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~ 49 (75)
.++.++||||||.++-....
T Consensus 78 ~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 78 RKISFIGHSLGGLIARYALG 97 (217)
T ss_pred ccceEEEecccHHHHHHHHH
Confidence 58999999999999865554
No 134
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=97.90 E-value=6e-05 Score=43.27 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHh--C----CCcccEEEEecccCC
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALT--Y----PKKLAGVVALSCWLP 66 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~--~----p~~~~~~v~~~~~~~ 66 (75)
+.++...++..... -+..+++|+|+|+|+.++..++.. . .++|.++++++-+..
T Consensus 64 ~~~~~~~i~~~~~~-CP~~kivl~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGdP~~ 123 (179)
T PF01083_consen 64 VANLVRLIEEYAAR-CPNTKIVLAGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGDPRR 123 (179)
T ss_dssp HHHHHHHHHHHHHH-STTSEEEEEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-TTT
T ss_pred HHHHHHHHHHHHHh-CCCCCEEEEecccccHHHHHHHHhccCChhhhhhEEEEEEecCCcc
Confidence 34445555444333 366799999999999999999877 2 256889999986654
No 135
>PLN00413 triacylglycerol lipase
Probab=97.89 E-value=6.4e-05 Score=48.84 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.0
Q ss_pred CCCCceEEEEeChhHHHHHHHHH
Q psy7212 27 IPSDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
.+..++++.|||+||.+|...+.
T Consensus 281 ~p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 281 NPTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred CCCCeEEEEecCHHHHHHHHHHH
Confidence 46678999999999999998774
No 136
>KOG1553|consensus
Probab=97.89 E-value=4.8e-05 Score=48.16 Aligned_cols=51 Identities=22% Similarity=0.341 Sum_probs=40.3
Q ss_pred HHHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 14 VKHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 14 ~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
.+..+++..+ ..+...+.|++.|+|.||.-+...|..||+ |+++|+-.++-
T Consensus 294 A~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFD 345 (517)
T KOG1553|consen 294 AADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFD 345 (517)
T ss_pred HHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchh
Confidence 3444444443 567788899999999999999999999997 89999887754
No 137
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.88 E-value=3.6e-05 Score=51.34 Aligned_cols=55 Identities=24% Similarity=0.143 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHHHc-CCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 10 GIGKVKHRYFCEEVSA-GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
...+|+.+.++.+.+. ..+.+|+.+.|||.||++++..+.+.| .+++.+...+..
T Consensus 452 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~ 507 (620)
T COG1506 452 VDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGV 507 (620)
T ss_pred ccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcc
Confidence 3467777777754443 356679999999999999999999888 677777766643
No 138
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.86 E-value=0.00012 Score=46.76 Aligned_cols=62 Identities=23% Similarity=0.172 Sum_probs=45.1
Q ss_pred cccHHHHHHHHHHHHHH-c-CCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCC
Q psy7212 8 GPGIGKVKHRYFCEEVS-A-GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 69 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 69 (75)
.++...|+..+++.+.. . ..+..|++++|-|.||.+|..+-.+||+.+.+.+..|+++....
T Consensus 89 ~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~a~~ 152 (434)
T PF05577_consen 89 SEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQAKV 152 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CCHCC
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceeeeec
Confidence 34567888888888763 3 23446899999999999999999999999999999998875443
No 139
>PLN02162 triacylglycerol lipase
Probab=97.86 E-value=6.9e-05 Score=48.62 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.3
Q ss_pred CCCCceEEEEeChhHHHHHHHHH
Q psy7212 27 IPSDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
.+..++++.|||+||.+|...+.
T Consensus 275 ~p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 275 NKNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred CCCceEEEEecChHHHHHHHHHH
Confidence 35578999999999999988754
No 140
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=97.86 E-value=8.5e-05 Score=44.25 Aligned_cols=57 Identities=18% Similarity=0.102 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhC----C-----CcccEEEEecccCCC
Q psy7212 10 GIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTY----P-----KKLAGVVALSCWLPM 67 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~----p-----~~~~~~v~~~~~~~~ 67 (75)
.-...+.++++.+... .+.++|++++||||+.+.+...... + ..+..+++.+|-.+.
T Consensus 74 ~s~~~l~~~L~~L~~~-~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~ 139 (233)
T PF05990_consen 74 FSGPALARFLRDLARA-PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDN 139 (233)
T ss_pred HHHHHHHHHHHHHHhc-cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCH
Confidence 3455566667665433 3567999999999999988876542 1 257889999887654
No 141
>KOG2984|consensus
Probab=97.86 E-value=3.3e-06 Score=49.82 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCC
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 67 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~ 67 (75)
+++...+++. ++.+++.++|+|-||..++..|.++++.|.++|++++....
T Consensus 101 a~~avdLM~a-----Lk~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayv 151 (277)
T KOG2984|consen 101 AEYAVDLMEA-----LKLEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYV 151 (277)
T ss_pred HHHHHHHHHH-----hCCCCeeEeeecCCCeEEEEeeccChhhhhhheeeccccee
Confidence 3445556666 68889999999999999999999999999999999876543
No 142
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=97.85 E-value=0.00018 Score=40.65 Aligned_cols=39 Identities=33% Similarity=0.343 Sum_probs=31.2
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC---CCcccEEEEecccCC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTY---PKKLAGVVALSCWLP 66 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~---p~~~~~~v~~~~~~~ 66 (75)
+..+++++|||+||.++..++.+. +..+.+++++++..+
T Consensus 62 ~~~~~~l~g~s~Gg~~a~~~a~~l~~~~~~~~~l~~~~~~~~ 103 (212)
T smart00824 62 GGRPFVLVGHSSGGLLAHAVAARLEARGIPPAAVVLLDTYPP 103 (212)
T ss_pred CCCCeEEEEECHHHHHHHHHHHHHHhCCCCCcEEEEEccCCC
Confidence 456799999999999999888863 456888988876543
No 143
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=97.84 E-value=3.6e-05 Score=51.27 Aligned_cols=56 Identities=13% Similarity=-0.025 Sum_probs=41.2
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCC---------------CcccEEEEecccC
Q psy7212 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYP---------------KKLAGVVALSCWL 65 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p---------------~~~~~~v~~~~~~ 65 (75)
+.+...+.++++...+.. +.++++|+||||||.+++++....+ +-|++.|.+++++
T Consensus 193 d~YF~rLK~lIE~ay~~n-ggkKVVLV~HSMGglv~lyFL~wv~~~~~~gG~gG~~W~dKyI~s~I~Iagp~ 263 (642)
T PLN02517 193 DQTLSRLKSNIELMVATN-GGKKVVVVPHSMGVLYFLHFMKWVEAPAPMGGGGGPGWCAKHIKAVMNIGGPF 263 (642)
T ss_pred hHHHHHHHHHHHHHHHHc-CCCeEEEEEeCCchHHHHHHHHhccccccccCCcchHHHHHHHHHheeccccc
Confidence 456677888888765442 3478999999999999998876421 1267888888764
No 144
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=97.83 E-value=0.00016 Score=44.36 Aligned_cols=48 Identities=29% Similarity=0.326 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
..++.++++. .+++ ++++++|||.|+-.|+.++..+| ..++++++|..
T Consensus 90 ~~~~~~ll~~---l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~G 137 (297)
T PF06342_consen 90 QNFVNALLDE---LGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPPG 137 (297)
T ss_pred HHHHHHHHHH---cCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCCc
Confidence 4445555554 3444 67999999999999999999996 57999998753
No 145
>PLN02454 triacylglycerol lipase
Probab=97.83 E-value=7.5e-05 Score=47.86 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHcCCCCC--ceEEEEeChhHHHHHHHHHh
Q psy7212 11 IGKVKHRYFCEEVSAGIPSD--RIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~--~~~l~G~S~Gg~~a~~~a~~ 50 (75)
..+++.+.++.+... .+.+ ++++.|||+||.+|+..|..
T Consensus 208 ~r~qvl~~V~~l~~~-Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 208 ARSQLLAKIKELLER-YKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHHHHHHh-CCCCCceEEEEecCHHHHHHHHHHHH
Confidence 334444445444422 2333 49999999999999988854
No 146
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=97.83 E-value=4e-05 Score=49.12 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCc-ccEEEEecccCCCCCCC
Q psy7212 13 KVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKK-LAGVVALSCWLPMHKSF 71 (75)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~-~~~~v~~~~~~~~~~~~ 71 (75)
+.+.+-++..... .+.++|.++|||+||+++..++..++.+ ++.++++.+..++....
T Consensus 165 e~l~~aid~v~~i-tg~~~InliGyCvGGtl~~~ala~~~~k~I~S~T~lts~~DF~~~g 223 (445)
T COG3243 165 EGLSEAIDTVKDI-TGQKDINLIGYCVGGTLLAAALALMAAKRIKSLTLLTSPVDFSHAG 223 (445)
T ss_pred HHHHHHHHHHHHH-hCccccceeeEecchHHHHHHHHhhhhcccccceeeecchhhcccc
Confidence 4444444443322 3457899999999999999998888877 99999999998877643
No 147
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=97.79 E-value=5.1e-05 Score=48.16 Aligned_cols=46 Identities=28% Similarity=0.231 Sum_probs=32.7
Q ss_pred HHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy7212 16 HRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 62 (75)
Q Consensus 16 ~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~ 62 (75)
...++.+. +..++.++|.++|+||||..++.+++..+ +|++.|..+
T Consensus 211 mr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaALDd-RIka~v~~~ 257 (390)
T PF12715_consen 211 MRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAALDD-RIKATVANG 257 (390)
T ss_dssp HHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH-T-T--EEEEES
T ss_pred HHHHHHHhcCcccCccceEEEeecccHHHHHHHHHcch-hhHhHhhhh
Confidence 34555554 55678899999999999999999998765 577766554
No 148
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=97.79 E-value=0.00011 Score=42.14 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=36.1
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCCC
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKS 70 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~~ 70 (75)
+...+.++.|+||||-++...+......++++++++=++.....
T Consensus 86 l~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhppGK 129 (213)
T COG3571 86 LAEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHPPGK 129 (213)
T ss_pred ccCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCCCCC
Confidence 55568999999999999999998776669999999976655443
No 149
>KOG2369|consensus
Probab=97.78 E-value=5.1e-05 Score=49.08 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=40.6
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCc--------ccEEEEeccc
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKK--------LAGVVALSCW 64 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~--------~~~~v~~~~~ 64 (75)
..+.+...++..++...+.. +.+|++|++||||+.+.+++...++.. +++++.++++
T Consensus 160 ~rd~yl~kLK~~iE~~~~~~-G~kkVvlisHSMG~l~~lyFl~w~~~~~~~W~~k~I~sfvnig~p 224 (473)
T KOG2369|consen 160 ERDQYLSKLKKKIETMYKLN-GGKKVVLISHSMGGLYVLYFLKWVEAEGPAWCDKYIKSFVNIGAP 224 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCceEEEecCCccHHHHHHHhcccccchhHHHHHHHHHHccCch
Confidence 34555666777776655443 447999999999999999999998762 4555555543
No 150
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=97.77 E-value=0.00018 Score=45.20 Aligned_cols=52 Identities=23% Similarity=0.199 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
..+...+++++.+.+ ..++.+.|.||||.+|...+...|..+..+-++++..
T Consensus 159 i~E~~~Ll~Wl~~~G--~~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~s 210 (348)
T PF09752_consen 159 ILESRALLHWLEREG--YGPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSS 210 (348)
T ss_pred HHHHHHHHHHHHhcC--CCceEEEEechhHhhHHhhhhcCCCceeEEEeecccC
Confidence 445555665555554 4599999999999999999999999887776666543
No 151
>KOG1515|consensus
Probab=97.77 E-value=0.00015 Score=45.41 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=40.2
Q ss_pred HHHcCCCCCceEEEEeChhHHHHHHHHHhC------CCcccEEEEecccCCCCCCC
Q psy7212 22 EVSAGIPSDRIVIGGFSQGGALALYSALTY------PKKLAGVVALSCWLPMHKSF 71 (75)
Q Consensus 22 ~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~------p~~~~~~v~~~~~~~~~~~~ 71 (75)
+.+.+.+.++++|+|-|.||++|..++.+. +.++++.|++.|.+...+..
T Consensus 158 ~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~ 213 (336)
T KOG1515|consen 158 WLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRT 213 (336)
T ss_pred HHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCC
Confidence 335667889999999999999999998864 24689999999988665443
No 152
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.77 E-value=0.00012 Score=47.57 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=46.7
Q ss_pred cccHHHHHHHHHHHHHHc--CCCCCceEEEEeChhHHHHHHHHHhC----------CCcccEEEEecccCCCCCC
Q psy7212 8 GPGIGKVKHRYFCEEVSA--GIPSDRIVIGGFSQGGALALYSALTY----------PKKLAGVVALSCWLPMHKS 70 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~S~Gg~~a~~~a~~~----------p~~~~~~v~~~~~~~~~~~ 70 (75)
.+..++|+.++++..+.. .+...+++|+|||+||..+..++.+- +-.++++++-+|+.+....
T Consensus 147 ~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg~~dp~~q 221 (462)
T PTZ00472 147 ESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNGLTDPYTQ 221 (462)
T ss_pred hHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEeccccChhhh
Confidence 356788888888876522 34457899999999999888877652 1257899999998866543
No 153
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=97.76 E-value=0.00018 Score=44.00 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=28.5
Q ss_pred CceEEEEeChhHHHHHHHHHhCCC-cccEEEEecccC
Q psy7212 30 DRIVIGGFSQGGALALYSALTYPK-KLAGVVALSCWL 65 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~~p~-~~~~~v~~~~~~ 65 (75)
+-++++|||+||.++..++.+.|+ .|+.+|.++++-
T Consensus 80 ~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlggph 116 (279)
T PF02089_consen 80 NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGGPH 116 (279)
T ss_dssp T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES--T
T ss_pred cceeeeeeccccHHHHHHHHHCCCCCceeEEEecCcc
Confidence 469999999999999999999875 699999999864
No 154
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.75 E-value=0.00012 Score=46.18 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=45.1
Q ss_pred CCCCcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhC--------CCcccEEEEecccCC
Q psy7212 4 AHEQGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTY--------PKKLAGVVALSCWLP 66 (75)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~--------p~~~~~~v~~~~~~~ 66 (75)
+.+...+-..++..+++.+.+.. +.++++|++||||.++.+....+. +.+++-+|+-+|-.+
T Consensus 166 DreS~~~Sr~aLe~~lr~La~~~-~~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD 235 (377)
T COG4782 166 DRESTNYSRPALERLLRYLATDK-PVKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDID 235 (377)
T ss_pred chhhhhhhHHHHHHHHHHHHhCC-CCceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCC
Confidence 34455566778888887765443 567899999999999999887653 234677887777554
No 155
>PLN02571 triacylglycerol lipase
Probab=97.74 E-value=5.8e-05 Score=48.33 Aligned_cols=20 Identities=45% Similarity=0.544 Sum_probs=17.9
Q ss_pred ceEEEEeChhHHHHHHHHHh
Q psy7212 31 RIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a~~ 50 (75)
++++.|||+||.+|+..|..
T Consensus 227 sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 227 SITICGHSLGAALATLNAVD 246 (413)
T ss_pred cEEEeccchHHHHHHHHHHH
Confidence 68999999999999988764
No 156
>KOG3101|consensus
Probab=97.74 E-value=2.5e-06 Score=50.58 Aligned_cols=55 Identities=24% Similarity=0.180 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
+++++.++++.. ...++..++.+.||||||.-|+..+.+.|.+.+++-.+.|-..
T Consensus 123 v~kELp~~l~~~-~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~N 177 (283)
T KOG3101|consen 123 VVKELPQLLNSA-NVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICN 177 (283)
T ss_pred HHHHHHHHhccc-cccccchhcceeccccCCCceEEEEEcCcccccceeccccccC
Confidence 344444444421 1124567799999999999999999999998888877776543
No 157
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=97.72 E-value=0.0002 Score=43.14 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=50.4
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCC
Q psy7212 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 69 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 69 (75)
....+|..++|+.+.++.....+|.+.|.|.+|..++..|.+.|..+++++...+..+...
T Consensus 80 ~~e~~D~~d~I~W~~~Qpws~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~ 140 (272)
T PF02129_consen 80 PNEAQDGYDTIEWIAAQPWSNGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYR 140 (272)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCC
T ss_pred hhHHHHHHHHHHHHHhCCCCCCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccc
Confidence 4467888899988876666667999999999999999999988888999999998877665
No 158
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=97.70 E-value=0.00017 Score=45.14 Aligned_cols=60 Identities=18% Similarity=0.093 Sum_probs=41.8
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCC--cccEEEEecccCCC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPK--KLAGVVALSCWLPM 67 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~--~~~~~v~~~~~~~~ 67 (75)
...+..+|+..+++.+.+.. ...++..+|+|+||.+...|..+..+ .+.+.+.++.++++
T Consensus 126 yh~G~t~D~~~~l~~l~~~~-~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl 187 (345)
T COG0429 126 YHSGETEDIRFFLDWLKARF-PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDL 187 (345)
T ss_pred ecccchhHHHHHHHHHHHhC-CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHH
Confidence 34566799999998876543 56889999999999655555544322 45666776666544
No 159
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=97.67 E-value=9.2e-05 Score=47.79 Aligned_cols=55 Identities=20% Similarity=0.020 Sum_probs=39.6
Q ss_pred HHHHHHHHHHH----HcCCCCCceEEEEeChhHHHHHHHHHhC--CCcccEEEEecccCCC
Q psy7212 13 KVKHRYFCEEV----SAGIPSDRIVIGGFSQGGALALYSALTY--PKKLAGVVALSCWLPM 67 (75)
Q Consensus 13 ~~~~~~~~~~~----~~~~~~~~~~l~G~S~Gg~~a~~~a~~~--p~~~~~~v~~~~~~~~ 67 (75)
.|....++++. ..+.+.++|.++|+|.||.++..++... +..++++|+.|+....
T Consensus 155 ~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~~ 215 (493)
T cd00312 155 KDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALS 215 (493)
T ss_pred HHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCccC
Confidence 44444444333 3366888999999999999998887762 4468999999876543
No 160
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=97.65 E-value=0.00024 Score=44.68 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=32.8
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhCCC-----cccEEEEecccCCCC
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALTYPK-----KLAGVVALSCWLPMH 68 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~-----~~~~~v~~~~~~~~~ 68 (75)
.+.+++.|+|||+|+.+.++.....++ .|+.+++++++.+..
T Consensus 217 ~G~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv~~~ 263 (345)
T PF05277_consen 217 QGERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPVPSD 263 (345)
T ss_pred CCCCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCCCCC
Confidence 466789999999999998877765433 378999999877654
No 161
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=97.65 E-value=0.00016 Score=49.56 Aligned_cols=47 Identities=11% Similarity=-0.101 Sum_probs=34.0
Q ss_pred CCCcccHHHHHHHHHHHHH------Hc-----CCCCCceEEEEeChhHHHHHHHHHhC
Q psy7212 5 HEQGPGIGKVKHRYFCEEV------SA-----GIPSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
+++....+.|+..+...+. .. .++..+++++||||||.++..++...
T Consensus 519 RDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 519 RDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred ccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 3455666777777776654 11 14467899999999999999999753
No 162
>PLN02310 triacylglycerol lipase
Probab=97.64 E-value=0.00021 Score=45.74 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=18.2
Q ss_pred CceEEEEeChhHHHHHHHHHh
Q psy7212 30 DRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
.++.+.|||+||.+|+..+..
T Consensus 209 ~sI~vTGHSLGGALAtLaA~d 229 (405)
T PLN02310 209 VSLTVTGHSLGGALALLNAYE 229 (405)
T ss_pred ceEEEEcccHHHHHHHHHHHH
Confidence 479999999999999887753
No 163
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=97.63 E-value=0.00018 Score=42.10 Aligned_cols=37 Identities=30% Similarity=0.204 Sum_probs=24.0
Q ss_pred eEEEEeChhHHHHHHHHHhC--------CCcccEEEEecccCCCC
Q psy7212 32 IVIGGFSQGGALALYSALTY--------PKKLAGVVALSCWLPMH 68 (75)
Q Consensus 32 ~~l~G~S~Gg~~a~~~a~~~--------p~~~~~~v~~~~~~~~~ 68 (75)
..++|+|+||.+|..++... ...++-+|+++++.+..
T Consensus 104 dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~ 148 (212)
T PF03959_consen 104 DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPD 148 (212)
T ss_dssp SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EE
T ss_pred EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCc
Confidence 47999999999998888532 22578999999887643
No 164
>KOG4627|consensus
Probab=97.62 E-value=2.5e-05 Score=46.29 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=44.1
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHh-CCCcccEEEEecccCCCC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALT-YPKKLAGVVALSCWLPMH 68 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~-~p~~~~~~v~~~~~~~~~ 68 (75)
..+....+....++.++++--..+.+.+.|||.|+.++.....| +..++.+++++++-..+.
T Consensus 113 tL~qt~~~~~~gv~filk~~~n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~ 175 (270)
T KOG4627|consen 113 TLEQTMTQFTHGVNFILKYTENTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLR 175 (270)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHH
Confidence 33444555556666666554455679999999999999888766 444799999988866543
No 165
>PLN02408 phospholipase A1
Probab=97.62 E-value=0.00013 Score=46.20 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=17.8
Q ss_pred ceEEEEeChhHHHHHHHHHh
Q psy7212 31 RIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a~~ 50 (75)
++++.|||+||.+|...|..
T Consensus 201 sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 201 SLTITGHSLGAALATLTAYD 220 (365)
T ss_pred eEEEeccchHHHHHHHHHHH
Confidence 59999999999999888764
No 166
>PLN02934 triacylglycerol lipase
Probab=97.60 E-value=0.00012 Score=47.95 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=19.9
Q ss_pred CCCCceEEEEeChhHHHHHHHHH
Q psy7212 27 IPSDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
.+..++++.|||+||.+|...+.
T Consensus 318 ~p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 318 HKNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred CCCCeEEEeccccHHHHHHHHHH
Confidence 46678999999999999988864
No 167
>KOG4667|consensus
Probab=97.56 E-value=0.00043 Score=41.38 Aligned_cols=63 Identities=22% Similarity=0.174 Sum_probs=48.3
Q ss_pred CCCCcccHHHHHHHHHHHHHHcCCCCCc--eEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCCCC
Q psy7212 4 AHEQGPGIGKVKHRYFCEEVSAGIPSDR--IVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKSF 71 (75)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~ 71 (75)
........++|++.+++.+. +..+ -+++|||-||.+++.++.++++ ++-+|-+++..+....+
T Consensus 81 ~~Gn~~~eadDL~sV~q~~s----~~nr~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I 145 (269)
T KOG4667|consen 81 YYGNYNTEADDLHSVIQYFS----NSNRVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGI 145 (269)
T ss_pred ccCcccchHHHHHHHHHHhc----cCceEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcch
Confidence 34455567899999998852 2223 3689999999999999999987 88888888877665443
No 168
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=97.52 E-value=0.00062 Score=42.19 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=35.4
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCCC-cccEEEEecccCCCCC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTYPK-KLAGVVALSCWLPMHK 69 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~p~-~~~~~v~~~~~~~~~~ 69 (75)
+..+++++||+.|+.++..+....+. .++++|++++..+...
T Consensus 191 ~~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~I~a~~p~~~ 233 (310)
T PF12048_consen 191 GGKNIVLIGHGTGAGWAARYLAEKPPPMPDALVLINAYWPQPD 233 (310)
T ss_pred CCceEEEEEeChhHHHHHHHHhcCCCcccCeEEEEeCCCCcch
Confidence 44569999999999999999988765 4899999999876554
No 169
>PLN02324 triacylglycerol lipase
Probab=97.46 E-value=0.00026 Score=45.47 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.0
Q ss_pred CceEEEEeChhHHHHHHHHHh
Q psy7212 30 DRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
-+|.+.|||+||.+|+..|..
T Consensus 215 ~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 215 ISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred ceEEEecCcHHHHHHHHHHHH
Confidence 369999999999999888753
No 170
>KOG3847|consensus
Probab=97.46 E-value=5.9e-05 Score=47.08 Aligned_cols=38 Identities=24% Similarity=0.472 Sum_probs=31.7
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
++..++.++|||+||..+......+ .++++.|++++|.
T Consensus 238 l~~s~~aViGHSFGgAT~i~~ss~~-t~FrcaI~lD~WM 275 (399)
T KOG3847|consen 238 LDTSQAAVIGHSFGGATSIASSSSH-TDFRCAIALDAWM 275 (399)
T ss_pred hhhhhhhheeccccchhhhhhhccc-cceeeeeeeeeee
Confidence 5667899999999999888766655 4699999999985
No 171
>KOG2624|consensus
Probab=97.46 E-value=0.00015 Score=46.40 Aligned_cols=55 Identities=15% Similarity=0.022 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCC---cccEEEEecccCCC
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPK---KLAGVVALSCWLPM 67 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~---~~~~~v~~~~~~~~ 67 (75)
..|+.+.++.++..- +.++++.+|||+|+......+...|+ +++..++++|...+
T Consensus 144 ~yDLPA~IdyIL~~T-~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~ 201 (403)
T KOG2624|consen 144 TYDLPAMIDYILEKT-GQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFP 201 (403)
T ss_pred hcCHHHHHHHHHHhc-cccceEEEEEEccchhheehhcccchhhhhhheeeeecchhhh
Confidence 457888888877443 55799999999999999888887764 69999999987733
No 172
>KOG2100|consensus
Probab=97.43 E-value=0.00036 Score=47.77 Aligned_cols=57 Identities=23% Similarity=0.113 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCC-CcccEEEEecccCCCC
Q psy7212 12 GKVKHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYP-KKLAGVVALSCWLPMH 68 (75)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~~v~~~~~~~~~ 68 (75)
.+|....++.+. ..-+|.+|+.+.|+|.||++++..+...| ..+++.+.++|..++.
T Consensus 589 v~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~ 647 (755)
T KOG2100|consen 589 VKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL 647 (755)
T ss_pred hHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee
Confidence 444555555444 23468889999999999999999999998 4567779999876554
No 173
>KOG2281|consensus
Probab=97.43 E-value=0.0003 Score=47.54 Aligned_cols=54 Identities=22% Similarity=0.177 Sum_probs=40.4
Q ss_pred cccHHHHHHHHHHHHHHc-CCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccc
Q psy7212 8 GPGIGKVKHRYFCEEVSA-GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCW 64 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~ 64 (75)
.+..++-+.-+.++ . -++.+++.+-|+|.||++++....++|+.++..|.-+|.
T Consensus 707 ~eDQVeglq~Laeq---~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapV 761 (867)
T KOG2281|consen 707 VEDQVEGLQMLAEQ---TGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPV 761 (867)
T ss_pred ehhhHHHHHHHHHh---cCcccchheeEeccccccHHHHHHhhcCcceeeEEeccCcc
Confidence 33444444444443 3 257899999999999999999999999988887776654
No 174
>PLN02753 triacylglycerol lipase
Probab=97.40 E-value=0.00026 Score=46.62 Aligned_cols=21 Identities=48% Similarity=0.616 Sum_probs=18.5
Q ss_pred CCceEEEEeChhHHHHHHHHH
Q psy7212 29 SDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
..+|.+.|||+||.+|+..|.
T Consensus 311 ~~sItVTGHSLGGALAtLaA~ 331 (531)
T PLN02753 311 DLSITVTGHSLGGALAILSAY 331 (531)
T ss_pred CceEEEEccCHHHHHHHHHHH
Confidence 358999999999999998875
No 175
>PLN02802 triacylglycerol lipase
Probab=97.40 E-value=0.00032 Score=45.98 Aligned_cols=21 Identities=43% Similarity=0.415 Sum_probs=18.1
Q ss_pred CceEEEEeChhHHHHHHHHHh
Q psy7212 30 DRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
.+|++.|||+||.+|+..+..
T Consensus 330 ~sI~VTGHSLGGALAtLaA~d 350 (509)
T PLN02802 330 LSITVTGHSLGAALALLVADE 350 (509)
T ss_pred ceEEEeccchHHHHHHHHHHH
Confidence 369999999999999887764
No 176
>COG3150 Predicted esterase [General function prediction only]
Probab=97.38 E-value=0.0004 Score=39.90 Aligned_cols=54 Identities=17% Similarity=0.092 Sum_probs=37.8
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCC
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 69 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 69 (75)
.....+.+.+++.. ...++..++|-|+||+.|..++.++. ++ .|+++|...+.+
T Consensus 42 p~~a~~ele~~i~~-----~~~~~p~ivGssLGGY~At~l~~~~G--ir-av~~NPav~P~e 95 (191)
T COG3150 42 PQQALKELEKAVQE-----LGDESPLIVGSSLGGYYATWLGFLCG--IR-AVVFNPAVRPYE 95 (191)
T ss_pred HHHHHHHHHHHHHH-----cCCCCceEEeecchHHHHHHHHHHhC--Ch-hhhcCCCcCchh
Confidence 34455666666666 45566999999999999999999884 33 355666654443
No 177
>PLN03037 lipase class 3 family protein; Provisional
Probab=97.37 E-value=0.0003 Score=46.26 Aligned_cols=21 Identities=48% Similarity=0.618 Sum_probs=18.2
Q ss_pred CceEEEEeChhHHHHHHHHHh
Q psy7212 30 DRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
.++.+.|||+||.+|+..|..
T Consensus 318 ~SItVTGHSLGGALAtLaA~D 338 (525)
T PLN03037 318 VSLTITGHSLGGALALLNAYE 338 (525)
T ss_pred ceEEEeccCHHHHHHHHHHHH
Confidence 469999999999999888753
No 178
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=97.33 E-value=0.0014 Score=45.01 Aligned_cols=56 Identities=14% Similarity=-0.021 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHH---------------cCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 11 IGKVKHRYFCEEVS---------------AGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 11 ~~~~~~~~~~~~~~---------------~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
..+|..++|+++.. ..+-..+|.++|.|+||.+++..|...|..++++|..++...
T Consensus 304 E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~G~~~~~aAa~~pp~LkAIVp~a~is~ 374 (767)
T PRK05371 304 EIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYLGTLPNAVATTGVEGLETIIPEAAISS 374 (767)
T ss_pred HHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcHHHHHHHHHHhhCCCcceEEEeeCCCCc
Confidence 45677778877652 112257999999999999999999988888999999877643
No 179
>PLN02719 triacylglycerol lipase
Probab=97.29 E-value=0.0005 Score=45.17 Aligned_cols=20 Identities=50% Similarity=0.622 Sum_probs=17.8
Q ss_pred CceEEEEeChhHHHHHHHHH
Q psy7212 30 DRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~ 49 (75)
.++.+.|||+||.+|+..|.
T Consensus 298 ~sItVTGHSLGGALAtLaA~ 317 (518)
T PLN02719 298 LSITVTGHSLGGALAVLSAY 317 (518)
T ss_pred ceEEEecCcHHHHHHHHHHH
Confidence 47999999999999988775
No 180
>KOG4569|consensus
Probab=97.25 E-value=0.00062 Score=42.63 Aligned_cols=36 Identities=36% Similarity=0.448 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHh
Q psy7212 10 GIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
++.+++..+++. .+.-++.+-|||+||.+|...|..
T Consensus 156 ~~~~~~~~L~~~-----~~~~~i~vTGHSLGgAlA~laa~~ 191 (336)
T KOG4569|consen 156 GLDAELRRLIEL-----YPNYSIWVTGHSLGGALASLAALD 191 (336)
T ss_pred HHHHHHHHHHHh-----cCCcEEEEecCChHHHHHHHHHHH
Confidence 445555666655 566789999999999999877754
No 181
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=97.25 E-value=0.00054 Score=41.93 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=32.8
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCC--CcccEEEEecccCCC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTYP--KKLAGVVALSCWLPM 67 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~p--~~~~~~v~~~~~~~~ 67 (75)
+.+++.++|||.||-.|..+|..+. -.+.++|.++|....
T Consensus 118 nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~ 159 (307)
T PF07224_consen 118 NLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGT 159 (307)
T ss_pred ccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCC
Confidence 5678999999999999999999874 247889988875533
No 182
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.22 E-value=0.0012 Score=44.47 Aligned_cols=61 Identities=26% Similarity=0.179 Sum_probs=48.8
Q ss_pred cHHHHHHHHHHHHHHcCC-CCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCCC
Q psy7212 10 GIGKVKHRYFCEEVSAGI-PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKS 70 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~~ 70 (75)
....|..+..+.+.+.+. ..++++++|-|.||++.-..+.+.|+.++++|+-.|+.+.-..
T Consensus 506 NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltT 567 (682)
T COG1770 506 NTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTT 567 (682)
T ss_pred ccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhh
Confidence 345566666777765554 4568999999999999999999999999999999988765543
No 183
>PLN02761 lipase class 3 family protein
Probab=97.22 E-value=0.00064 Score=44.79 Aligned_cols=20 Identities=45% Similarity=0.521 Sum_probs=17.7
Q ss_pred CceEEEEeChhHHHHHHHHH
Q psy7212 30 DRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~ 49 (75)
.++++.|||+||.+|+..|.
T Consensus 294 ~sItVTGHSLGGALAtLaA~ 313 (527)
T PLN02761 294 ISITVTGHSLGASLALVSAY 313 (527)
T ss_pred ceEEEeccchHHHHHHHHHH
Confidence 47999999999999988774
No 184
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.20 E-value=0.00036 Score=42.88 Aligned_cols=56 Identities=32% Similarity=0.291 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 10 GIGKVKHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 10 ~~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
....|+...++.+. -..++.+++.+.|.|+||.+++..+...| +++++++.-|.+.
T Consensus 155 ~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-rik~~~~~~Pfl~ 211 (321)
T COG3458 155 GVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-RIKAVVADYPFLS 211 (321)
T ss_pred eehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcCh-hhhcccccccccc
Confidence 34567777777665 34578899999999999999998888776 5888888877664
No 185
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=97.19 E-value=0.00096 Score=43.13 Aligned_cols=42 Identities=19% Similarity=0.076 Sum_probs=32.1
Q ss_pred HcCCCCCceEEEEeChhHHHHHHHHHhC--CCcccEEEEecccC
Q psy7212 24 SAGIPSDRIVIGGFSQGGALALYSALTY--PKKLAGVVALSCWL 65 (75)
Q Consensus 24 ~~~~~~~~~~l~G~S~Gg~~a~~~a~~~--p~~~~~~v~~~~~~ 65 (75)
.-|-+.++|.|+|||.||..+..++..- ...++++|+.|+..
T Consensus 202 ~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~ 245 (535)
T PF00135_consen 202 AFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSA 245 (535)
T ss_dssp GGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--T
T ss_pred hcccCCcceeeeeecccccccceeeecccccccccccccccccc
Confidence 3456778999999999999887777652 35799999999854
No 186
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=97.18 E-value=0.001 Score=41.91 Aligned_cols=44 Identities=16% Similarity=0.090 Sum_probs=34.3
Q ss_pred cccHHHHHHHHHHHHH--HcCCCCCceEEEEeChhHHHHHHHHHhC
Q psy7212 8 GPGIGKVKHRYFCEEV--SAGIPSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
.+.++++-...++.+. ..+.+.++|++.|||+||.++...+.++
T Consensus 191 ~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 191 RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 4567777778887776 3466778999999999999988866654
No 187
>KOG2541|consensus
Probab=97.03 E-value=0.0046 Score=37.98 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=30.9
Q ss_pred CceEEEEeChhHHHHHHHHHhCCC-cccEEEEecccC
Q psy7212 30 DRIVIGGFSQGGALALYSALTYPK-KLAGVVALSCWL 65 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~~p~-~~~~~v~~~~~~ 65 (75)
+-++++|+|+||.++..++...|+ ++..+|.++++-
T Consensus 92 qGynivg~SQGglv~Raliq~cd~ppV~n~ISL~gPh 128 (296)
T KOG2541|consen 92 QGYNIVGYSQGGLVARALIQFCDNPPVKNFISLGGPH 128 (296)
T ss_pred CceEEEEEccccHHHHHHHHhCCCCCcceeEeccCCc
Confidence 559999999999999999998765 588999988764
No 188
>PLN02847 triacylglycerol lipase
Probab=97.01 E-value=0.0018 Score=43.49 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=19.8
Q ss_pred CCCCceEEEEeChhHHHHHHHHHh
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
.+.-+++++|||+||.+|..++..
T Consensus 248 ~PdYkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 248 YPDFKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred CCCCeEEEeccChHHHHHHHHHHH
Confidence 455689999999999999877654
No 189
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=96.91 E-value=0.0062 Score=39.18 Aligned_cols=37 Identities=30% Similarity=0.250 Sum_probs=33.1
Q ss_pred CceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCC
Q psy7212 30 DRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~ 66 (75)
-|++.+|+|.||++|...+.-.|..+++++=-|++..
T Consensus 184 lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~ 220 (403)
T PF11144_consen 184 LPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYAL 220 (403)
T ss_pred CcEEEEecCcHHHHHHHHHhhCccceeEEEecCcccc
Confidence 4899999999999999999999999999988887764
No 190
>KOG2183|consensus
Probab=96.87 E-value=0.0017 Score=42.05 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHHHHHH-cCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC-CCCCCCC
Q psy7212 9 PGIGKVKHRYFCEEVS-AGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL-PMHKSFP 72 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~-~~~~~~~ 72 (75)
++...|...++..+.+ .+-...+++.+|-|.||+++..+-.+||..+.+...-|.++ .+.+..|
T Consensus 145 eQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPvl~f~d~vp 210 (492)
T KOG2183|consen 145 EQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPVLYFEDTVP 210 (492)
T ss_pred HHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCceEeecCCCC
Confidence 3445666777776653 33345789999999999999999999999887776666553 4444443
No 191
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=96.86 E-value=0.0021 Score=42.05 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=37.9
Q ss_pred cCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCC
Q psy7212 25 AGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 67 (75)
Q Consensus 25 ~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~ 67 (75)
++...++-...|-|.||.-++..|++||+.+++++.-+|....
T Consensus 110 Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~ 152 (474)
T PF07519_consen 110 YGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINW 152 (474)
T ss_pred hCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHH
Confidence 4445677899999999999999999999999999999987654
No 192
>KOG3975|consensus
Probab=96.82 E-value=0.011 Score=36.12 Aligned_cols=37 Identities=22% Similarity=0.099 Sum_probs=27.5
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCC--CcccEEEEeccc
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTYP--KKLAGVVALSCW 64 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~p--~~~~~~v~~~~~ 64 (75)
...+++++|||.|+++.+.+..... -.+++.+++=|.
T Consensus 108 k~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFPT 146 (301)
T KOG3975|consen 108 KDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFPT 146 (301)
T ss_pred CCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecch
Confidence 3467999999999999999887432 246677766553
No 193
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=96.64 E-value=0.007 Score=37.81 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=23.1
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhCC
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~~p 52 (75)
.+..++.+-|||+||.+|..+..++.
T Consensus 273 Ypda~iwlTGHSLGGa~AsLlG~~fg 298 (425)
T COG5153 273 YPDARIWLTGHSLGGAIASLLGIRFG 298 (425)
T ss_pred CCCceEEEeccccchHHHHHhccccC
Confidence 57789999999999999999888874
No 194
>KOG4540|consensus
Probab=96.64 E-value=0.007 Score=37.81 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=23.1
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhCC
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~~p 52 (75)
.+..++.+-|||+||.+|..+..++.
T Consensus 273 Ypda~iwlTGHSLGGa~AsLlG~~fg 298 (425)
T KOG4540|consen 273 YPDARIWLTGHSLGGAIASLLGIRFG 298 (425)
T ss_pred CCCceEEEeccccchHHHHHhccccC
Confidence 57789999999999999999888874
No 195
>KOG4840|consensus
Probab=96.59 E-value=0.0018 Score=39.04 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=42.2
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHh--CCCcccEEEEecccCC
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALT--YPKKLAGVVALSCWLP 66 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~--~p~~~~~~v~~~~~~~ 66 (75)
...-++|++.+++++...+.. .+++++|||.|..-.++|..+ .|..+++.|+.+|..+
T Consensus 86 lk~D~edl~~l~~Hi~~~~fS-t~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSD 145 (299)
T KOG4840|consen 86 LKDDVEDLKCLLEHIQLCGFS-TDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSD 145 (299)
T ss_pred ccccHHHHHHHHHHhhccCcc-cceEEEecCccchHHHHHHHhccchHHHHHHHHhCccch
Confidence 345578999999976544433 489999999999999888843 3555777777776554
No 196
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=96.53 E-value=0.0043 Score=39.39 Aligned_cols=43 Identities=16% Similarity=-0.001 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHHHHc--------CCCCCceEEEEeChhHHHHHHHHHhCC
Q psy7212 10 GIGKVKHRYFCEEVSA--------GIPSDRIVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~--------~~~~~~~~l~G~S~Gg~~a~~~a~~~p 52 (75)
....|+..+++.+.+. .++..+|.++|||+||+.++..+....
T Consensus 131 erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 131 ERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred cccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 3455666666666532 256789999999999999999886543
No 197
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.0026 Score=36.91 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=35.8
Q ss_pred CCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCC
Q psy7212 26 GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 68 (75)
Q Consensus 26 ~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~ 68 (75)
.++ .+..+-|-||||..|..+..++|+.+.++|.+|+..+..
T Consensus 98 alp-gs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdar 139 (227)
T COG4947 98 ALP-GSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDAR 139 (227)
T ss_pred hcC-CCccccccchhhhhhhhhheeChhHhhhheeecceeeHH
Confidence 344 457888999999999999999999999999999876543
No 198
>KOG2029|consensus
Probab=96.35 E-value=0.02 Score=38.70 Aligned_cols=55 Identities=29% Similarity=0.324 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHHHcCCC-CCceEEEEeChhHHHHHHHHHh-----CC------CcccEEEEeccc
Q psy7212 10 GIGKVKHRYFCEEVSAGIP-SDRIVIGGFSQGGALALYSALT-----YP------KKLAGVVALSCW 64 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~-~~~~~l~G~S~Gg~~a~~~a~~-----~p------~~~~~~v~~~~~ 64 (75)
.++....++++++...+++ ..+++.+||||||.++=.+... .| ...+++++++.+
T Consensus 505 sl~~Rs~~lleql~~~~VG~~RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~P 571 (697)
T KOG2029|consen 505 SLAARSNELLEQLQAAGVGDDRPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVP 571 (697)
T ss_pred HHHHHHHHHHHHHHHhccCCCCceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecC
Confidence 3455556777777655555 5679999999999888665543 23 246788888765
No 199
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=96.26 E-value=0.025 Score=33.73 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=20.6
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
..++++++|+|+|+.++..++.+.
T Consensus 46 ~~~~vvV~GySQGA~Va~~~~~~l 69 (225)
T PF08237_consen 46 AGGPVVVFGYSQGAVVASNVLRRL 69 (225)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHH
Confidence 457899999999999998887764
No 200
>KOG2182|consensus
Probab=96.26 E-value=0.0071 Score=39.82 Aligned_cols=61 Identities=16% Similarity=0.076 Sum_probs=49.0
Q ss_pred ccHHHHHHHHHHHHH-HcCCCC-CceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCCC
Q psy7212 9 PGIGKVKHRYFCEEV-SAGIPS-DRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHK 69 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~-~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 69 (75)
.....|+..+|+.+. +.+... .+++.+|-|.-|.++..+-..+|+.+.+.|..|+++...-
T Consensus 149 ~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv~A~~ 211 (514)
T KOG2182|consen 149 LQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPVLAKV 211 (514)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccceeEEe
Confidence 345678888888876 444443 3899999999999999999999999999999998875443
No 201
>KOG2385|consensus
Probab=96.21 E-value=0.019 Score=38.24 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=35.7
Q ss_pred HHHHHcCCCCCceEEEEeChhHHHHHHHHHhCC-----CcccEEEEecccCCCC
Q psy7212 20 CEEVSAGIPSDRIVIGGFSQGGALALYSALTYP-----KKLAGVVALSCWLPMH 68 (75)
Q Consensus 20 ~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-----~~~~~~v~~~~~~~~~ 68 (75)
+.++....+.+++.++|+|+|+-+.++...... ..+..++++++|.+..
T Consensus 437 e~L~~r~qG~RPVTLVGFSLGARvIf~CL~~Lakkke~~iIEnViL~GaPv~~k 490 (633)
T KOG2385|consen 437 EALCKRSQGNRPVTLVGFSLGARVIFECLLELAKKKEVGIIENVILFGAPVPTK 490 (633)
T ss_pred HHHHHhccCCCceeEeeeccchHHHHHHHHHHhhcccccceeeeeeccCCccCC
Confidence 333433356788999999999998876665322 3588999999888765
No 202
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=96.18 E-value=0.029 Score=35.44 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=43.8
Q ss_pred CcccHHHHHHHHHHHHHH--cCCCCCceEEEEeChhHHHHHHHHHh----C------CCcccEEEEecccCCC
Q psy7212 7 QGPGIGKVKHRYFCEEVS--AGIPSDRIVIGGFSQGGALALYSALT----Y------PKKLAGVVALSCWLPM 67 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~G~S~Gg~~a~~~a~~----~------p~~~~~~v~~~~~~~~ 67 (75)
+.+..++++.++++.... ..+...+++|.|.|.||..+..+|.+ . +-.++++++.+|+.+.
T Consensus 111 ~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGng~~dp 183 (415)
T PF00450_consen 111 NDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGNGWIDP 183 (415)
T ss_dssp SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEESE-SBH
T ss_pred hhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecCccccc
Confidence 345667788888877762 23455689999999999887777653 2 3458899999998764
No 203
>KOG2237|consensus
Probab=96.17 E-value=0.0066 Score=41.15 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCC-CCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCC
Q psy7212 12 GKVKHRYFCEEVSAGI-PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 68 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~ 68 (75)
.+|...-.+.+...++ ..++..+-|.|.||.++-....++|+.++++|+--|.+++-
T Consensus 530 f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL 587 (712)
T KOG2237|consen 530 FDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVL 587 (712)
T ss_pred HHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehh
Confidence 4566666666665543 55789999999999999999999999999999988877654
No 204
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=96.14 E-value=0.012 Score=38.02 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=35.4
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCC
Q psy7212 6 EQGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p 52 (75)
.+-+..++|+..+++.+.+. ++..++.++|+|+|+=+--....+.|
T Consensus 303 rtPe~~a~Dl~r~i~~y~~~-w~~~~~~liGySfGADvlP~~~n~L~ 348 (456)
T COG3946 303 RTPEQIAADLSRLIRFYARR-WGAKRVLLIGYSFGADVLPFAYNRLP 348 (456)
T ss_pred CCHHHHHHHHHHHHHHHHHh-hCcceEEEEeecccchhhHHHHHhCC
Confidence 35567889999999876543 46679999999999987766666655
No 205
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=95.84 E-value=0.007 Score=39.77 Aligned_cols=42 Identities=24% Similarity=0.172 Sum_probs=33.4
Q ss_pred HcCCCCCceEEEEeChhHHHHHHHHHhCC---CcccEEEEecccCC
Q psy7212 24 SAGIPSDRIVIGGFSQGGALALYSALTYP---KKLAGVVALSCWLP 66 (75)
Q Consensus 24 ~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p---~~~~~~v~~~~~~~ 66 (75)
.-|-+.++|.|+|+|.||+.++.++.. | ..+++.|+.|+...
T Consensus 174 ~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 174 AFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred HhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 456688899999999999888776654 4 35888888888775
No 206
>KOG3043|consensus
Probab=95.50 E-value=0.0095 Score=35.74 Aligned_cols=55 Identities=18% Similarity=0.100 Sum_probs=41.4
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
+..-+++..+++.+... .+..+|-++|++|||.++..+....| .+.+.++.-|.+
T Consensus 100 ~~~~~~i~~v~k~lk~~-g~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps~ 154 (242)
T KOG3043|consen 100 PKIWKDITAVVKWLKNH-GDSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPSF 154 (242)
T ss_pred ccchhHHHHHHHHHHHc-CCcceeeEEEEeecceEEEEeeccch-hheeeeEecCCc
Confidence 34456777777766534 35678999999999999998888887 577777776654
No 207
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=95.50 E-value=0.047 Score=32.45 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=27.8
Q ss_pred CCceEEEEeChhHHHHHHHHHhCCCcccEEEEeccc-CCCC
Q psy7212 29 SDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCW-LPMH 68 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~-~~~~ 68 (75)
.+++.|+++|||-.+|..+....| ++..|.+++. .|..
T Consensus 56 y~~i~lvAWSmGVw~A~~~l~~~~--~~~aiAINGT~~Pid 94 (213)
T PF04301_consen 56 YREIYLVAWSMGVWAANRVLQGIP--FKRAIAINGTPYPID 94 (213)
T ss_pred CceEEEEEEeHHHHHHHHHhccCC--cceeEEEECCCCCcC
Confidence 468999999999999988766543 5666666654 4444
No 208
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=95.42 E-value=0.025 Score=34.78 Aligned_cols=39 Identities=38% Similarity=0.575 Sum_probs=26.3
Q ss_pred CCceEEEEeChhHHHHHHHHHh---C-CC-c--ccEEEEecccCCC
Q psy7212 29 SDRIVIGGFSQGGALALYSALT---Y-PK-K--LAGVVALSCWLPM 67 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~a~~~a~~---~-p~-~--~~~~v~~~~~~~~ 67 (75)
..++.+.|||+||.-+...+.. | |+ + +.+.+..+++.++
T Consensus 70 ~~~v~l~GySqGG~Aa~~AA~l~~~YApeL~~~l~Gaa~gg~~~dl 115 (290)
T PF03583_consen 70 SSRVALWGYSQGGQAALWAAELAPSYAPELNRDLVGAAAGGPPADL 115 (290)
T ss_pred CCCEEEEeeCccHHHHHHHHHHhHHhCcccccceeEEeccCCccCH
Confidence 3679999999999887655533 2 43 2 6676666655543
No 209
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=95.34 E-value=0.1 Score=31.73 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=24.2
Q ss_pred ceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy7212 31 RIVIGGFSQGGALALYSALTYPKKLAGVVALS 62 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~ 62 (75)
+++=+|||+|+-+-+.+...++..-++.++++
T Consensus 91 P~~~vGHSlGcklhlLi~s~~~~~r~gniliS 122 (250)
T PF07082_consen 91 PVYGVGHSLGCKLHLLIGSLFDVERAGNILIS 122 (250)
T ss_pred CeeeeecccchHHHHHHhhhccCcccceEEEe
Confidence 67889999999988888777765445556554
No 210
>KOG3253|consensus
Probab=95.08 E-value=0.028 Score=38.30 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=40.9
Q ss_pred ccHHHHHHHHHHHHH---HcCCCCCceEEEEeChhHHHHHHHHHhCC-CcccEEEEecccCCCC
Q psy7212 9 PGIGKVKHRYFCEEV---SAGIPSDRIVIGGFSQGGALALYSALTYP-KKLAGVVALSCWLPMH 68 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~---~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~~v~~~~~~~~~ 68 (75)
....+.+..+..... ...++..+|+|+|.|||+.+++......- ..|+++|+++=++...
T Consensus 226 ~h~ae~~vSf~r~kvlei~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~v 289 (784)
T KOG3253|consen 226 KHAAEYSVSFDRYKVLEITGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTV 289 (784)
T ss_pred HHHHHHHHHHhhhhhhhhhccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCC
Confidence 334445555544222 33467889999999999988888876543 4589999998665443
No 211
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.03 E-value=0.046 Score=36.19 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=38.4
Q ss_pred cHHHHHHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecc
Q psy7212 10 GIGKVKHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 63 (75)
Q Consensus 10 ~~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~ 63 (75)
.+.+.|.++|++.+ ..+.+.+..++-|-|||..-|++|+++.. ..++|+--|
T Consensus 336 eyE~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l~--P~AIiVgKP 388 (511)
T TIGR03712 336 EYEQGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKLS--PHAIIVGKP 388 (511)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccCC--CceEEEcCc
Confidence 35566777776665 56788888999999999999999998762 244444333
No 212
>KOG2551|consensus
Probab=94.97 E-value=0.028 Score=33.63 Aligned_cols=35 Identities=34% Similarity=0.166 Sum_probs=26.5
Q ss_pred EEEEeChhHHHHHHHHHhCC------C--cccEEEEecccCCC
Q psy7212 33 VIGGFSQGGALALYSALTYP------K--KLAGVVALSCWLPM 67 (75)
Q Consensus 33 ~l~G~S~Gg~~a~~~a~~~p------~--~~~~~v~~~~~~~~ 67 (75)
-|+|+|+|+.++-.++...+ + .++=+|++|+....
T Consensus 107 GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~ 149 (230)
T KOG2551|consen 107 GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFP 149 (230)
T ss_pred cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCC
Confidence 68999999999998887211 1 36788888887654
No 213
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=94.78 E-value=0.085 Score=35.51 Aligned_cols=57 Identities=12% Similarity=-0.017 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCC
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 68 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~ 68 (75)
++|--+.|+.+.++..-..++..+|.|.+|...+..|...|.-+++++..++..+..
T Consensus 106 ~~Dg~D~I~Wia~QpWsNG~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y 162 (563)
T COG2936 106 AEDGYDTIEWLAKQPWSNGNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRY 162 (563)
T ss_pred ccchhHHHHHHHhCCccCCeeeeecccHHHHHHHHHHhcCCchheeecccccccccc
Confidence 345556666665555666789999999999999999998887899999888877644
No 214
>KOG3967|consensus
Probab=94.76 E-value=0.23 Score=30.10 Aligned_cols=38 Identities=16% Similarity=0.315 Sum_probs=30.8
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCCC--cccEEEEecccC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTYPK--KLAGVVALSCWL 65 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~p~--~~~~~v~~~~~~ 65 (75)
..+.++++.||.||...+.+..++|+ ++.++.+.++.+
T Consensus 188 ~~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~~ 227 (297)
T KOG3967|consen 188 KAESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSAM 227 (297)
T ss_pred CcceEEEEEeccCChhHHHHHHhcCCccceEEEEeecccc
Confidence 56789999999999999999999985 466666666553
No 215
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=94.50 E-value=0.17 Score=30.99 Aligned_cols=42 Identities=29% Similarity=0.191 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhC
Q psy7212 10 GIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
...+.+......+.+.-.+.++|+++|+|=|++.|-.++..-
T Consensus 72 g~~~~I~~ay~~l~~~~~~gd~I~lfGFSRGA~~AR~~a~~i 113 (277)
T PF09994_consen 72 GIEARIRDAYRFLSKNYEPGDRIYLFGFSRGAYTARAFANMI 113 (277)
T ss_pred chHHHHHHHHHHHHhccCCcceEEEEecCccHHHHHHHHHHH
Confidence 345555655555543334668899999999999999888653
No 216
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=94.31 E-value=0.0072 Score=40.68 Aligned_cols=63 Identities=21% Similarity=0.164 Sum_probs=52.7
Q ss_pred CCcccHHHHHHHHHHHHHHcCC-CCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCCC
Q psy7212 6 EQGPGIGKVKHRYFCEEVSAGI-PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 68 (75)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~~ 68 (75)
++.+...+|..++.+.+.+.++ ..+++.+-|-|-||.+......++|+.+.++|+--|.+++-
T Consensus 475 ~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMl 538 (648)
T COG1505 475 ENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDML 538 (648)
T ss_pred hcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhh
Confidence 3556678899999999887776 45789999999999998888889999999999988877654
No 217
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=94.05 E-value=0.07 Score=32.53 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEe
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVAL 61 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~ 61 (75)
..|+...++...+. .+..+..++|||+||.+... +.+++ ++.+....
T Consensus 88 ~~D~~aal~~~~~~-~~~~P~y~vgHS~GGqa~gL-~~~~~-k~~a~~vf 134 (281)
T COG4757 88 RLDFPAALAALKKA-LPGHPLYFVGHSFGGQALGL-LGQHP-KYAAFAVF 134 (281)
T ss_pred hcchHHHHHHHHhh-CCCCceEEeeccccceeecc-cccCc-ccceeeEe
Confidence 34666666655432 35567999999999977554 44455 33433333
No 218
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=93.69 E-value=0.24 Score=30.87 Aligned_cols=58 Identities=19% Similarity=0.093 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHH--cCCCCCceEEEEeChhHHHHHHHHHh----C------CCcccEEEEecccCCCCC
Q psy7212 12 GKVKHRYFCEEVS--AGIPSDRIVIGGFSQGGALALYSALT----Y------PKKLAGVVALSCWLPMHK 69 (75)
Q Consensus 12 ~~~~~~~~~~~~~--~~~~~~~~~l~G~S~Gg~~a~~~a~~----~------p~~~~~~v~~~~~~~~~~ 69 (75)
++++..+++..+. ..+...+++|.|-|.||..+..+|.+ . +-.++++++-+|+.....
T Consensus 31 a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~~~~~~inLkGi~IGNg~t~~~~ 100 (319)
T PLN02213 31 VKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPVTYMDF 100 (319)
T ss_pred HHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhcccccCCceeeeEEEeCCCCCCccc
Confidence 4677777766652 23456789999999999877777653 1 125789999998876543
No 219
>KOG1516|consensus
Probab=93.41 E-value=0.27 Score=32.45 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=30.7
Q ss_pred HcCCCCCceEEEEeChhHHHHHHHHHhC--CCcccEEEEecccC
Q psy7212 24 SAGIPSDRIVIGGFSQGGALALYSALTY--PKKLAGVVALSCWL 65 (75)
Q Consensus 24 ~~~~~~~~~~l~G~S~Gg~~a~~~a~~~--p~~~~~~v~~~~~~ 65 (75)
.-+.+.++|.++|||.||..+..++..- ...+.+.|..++..
T Consensus 189 ~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 189 SFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred hcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 4456788999999999999987766542 24577777776653
No 220
>PLN02209 serine carboxypeptidase
Probab=93.31 E-value=0.19 Score=32.90 Aligned_cols=58 Identities=17% Similarity=0.081 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHc--CCCCCceEEEEeChhHHHHHHHHHh----C------CCcccEEEEecccCCCC
Q psy7212 11 IGKVKHRYFCEEVSA--GIPSDRIVIGGFSQGGALALYSALT----Y------PKKLAGVVALSCWLPMH 68 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~S~Gg~~a~~~a~~----~------p~~~~~~v~~~~~~~~~ 68 (75)
.++++.++++..+.. .+...+++|.|.|.||..+..+|.. . +-.++++++.+++.+..
T Consensus 146 ~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi~igng~td~~ 215 (437)
T PLN02209 146 EVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGYVLGNPITHIE 215 (437)
T ss_pred HHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeeeEEecCcccChh
Confidence 446677777666522 2344689999999999866666543 2 12578999999887653
No 221
>KOG1551|consensus
Probab=93.23 E-value=0.16 Score=31.69 Aligned_cols=37 Identities=22% Similarity=0.130 Sum_probs=29.0
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecc
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 63 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~ 63 (75)
.+..++.++|-||||.+|-.....++..+..+=++++
T Consensus 192 ~g~g~~~~~g~Smgg~~a~~vgS~~q~Pva~~p~l~~ 228 (371)
T KOG1551|consen 192 DGLGNLNLVGRSMGGDIANQVGSLHQKPVATAPCLNS 228 (371)
T ss_pred cCcccceeeeeecccHHHHhhcccCCCCccccccccc
Confidence 3456899999999999999999888877665555443
No 222
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=93.12 E-value=0.28 Score=32.04 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHc--CCCCCceEEEEeChhHHHHHHHHHh----C------CCcccEEEEecccCCCC
Q psy7212 13 KVKHRYFCEEVSA--GIPSDRIVIGGFSQGGALALYSALT----Y------PKKLAGVVALSCWLPMH 68 (75)
Q Consensus 13 ~~~~~~~~~~~~~--~~~~~~~~l~G~S~Gg~~a~~~a~~----~------p~~~~~~v~~~~~~~~~ 68 (75)
+++.++++..+.. .+...+++|.|.|.||..+..+|.+ . +-.++++++-+|+.+..
T Consensus 146 ~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkGi~iGNg~t~~~ 213 (433)
T PLN03016 146 KRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPVTYMD 213 (433)
T ss_pred HHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcccceeeEecCCCcCch
Confidence 5666666665422 2345679999999999877666643 1 23688999999876554
No 223
>KOG2565|consensus
Probab=92.53 E-value=0.26 Score=32.03 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=34.4
Q ss_pred HHHHHHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEE
Q psy7212 14 VKHRYFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVA 60 (75)
Q Consensus 14 ~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~ 60 (75)
....++..+. +. +.+++++-|-.+|+.++..+|..+|++|.++=+
T Consensus 214 a~ArvmrkLMlRL--g~nkffiqGgDwGSiI~snlasLyPenV~GlHl 259 (469)
T KOG2565|consen 214 ATARVMRKLMLRL--GYNKFFIQGGDWGSIIGSNLASLYPENVLGLHL 259 (469)
T ss_pred HHHHHHHHHHHHh--CcceeEeecCchHHHHHHHHHhhcchhhhHhhh
Confidence 3444555443 44 456999999999999999999999998877543
No 224
>KOG4372|consensus
Probab=92.49 E-value=0.063 Score=34.70 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=16.7
Q ss_pred CCCceEEEEeChhHHHHHHHH
Q psy7212 28 PSDRIVIGGFSQGGALALYSA 48 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a 48 (75)
..+++-++|||+||.++....
T Consensus 148 si~kISfvghSLGGLvar~AI 168 (405)
T KOG4372|consen 148 SIEKISFVGHSLGGLVARYAI 168 (405)
T ss_pred ccceeeeeeeecCCeeeeEEE
Confidence 357999999999998875443
No 225
>KOG1202|consensus
Probab=92.17 E-value=0.41 Score=35.74 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=29.4
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCC--CcccEEEEecccC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTYP--KKLAGVVALSCWL 65 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~p--~~~~~~v~~~~~~ 65 (75)
+..+..++|+|.|+.++..++.... +....+|++++..
T Consensus 2180 P~GPYrl~GYSyG~~l~f~ma~~Lqe~~~~~~lillDGsp 2219 (2376)
T KOG1202|consen 2180 PEGPYRLAGYSYGACLAFEMASQLQEQQSPAPLILLDGSP 2219 (2376)
T ss_pred CCCCeeeeccchhHHHHHHHHHHHHhhcCCCcEEEecCch
Confidence 5678999999999999999987543 3355688887653
No 226
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=92.11 E-value=1.5 Score=25.90 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=25.4
Q ss_pred ceEEEEeChhHHHHHHHHHh---------CC-CcccEEEEecccCC
Q psy7212 31 RIVIGGFSQGGALALYSALT---------YP-KKLAGVVALSCWLP 66 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a~~---------~p-~~~~~~v~~~~~~~ 66 (75)
++.+-.+|.||...+..... .+ .+++++|+-|++..
T Consensus 68 ~il~H~FSnGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~ 113 (240)
T PF05705_consen 68 PILFHSFSNGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGI 113 (240)
T ss_pred CEEEEEEECchHHHHHHHHHHHHhcccccccccccceeEEeCCCCc
Confidence 89999999988776555431 11 23889998887753
No 227
>KOG1283|consensus
Probab=92.01 E-value=0.17 Score=32.22 Aligned_cols=63 Identities=17% Similarity=0.112 Sum_probs=47.4
Q ss_pred CcccHHHHHHHHHHHHH--HcCCCCCceEEEEeChhHHHHHHHHHhCC---------CcccEEEEecccCCCCC
Q psy7212 7 QGPGIGKVKHRYFCEEV--SAGIPSDRIVIGGFSQGGALALYSALTYP---------KKLAGVVALSCWLPMHK 69 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p---------~~~~~~v~~~~~~~~~~ 69 (75)
+....+.|+.++++.++ .+.+...+++++..|.||-++..++.... ..+.++++=++|..+.+
T Consensus 97 ~~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i~~nf~~VaLGDSWISP~D 170 (414)
T KOG1283|consen 97 NNKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEIKLNFIGVALGDSWISPED 170 (414)
T ss_pred cHHHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHhcCceeecceeEEccCcccChhH
Confidence 34557888999998887 34567788999999999999988876532 24667888888876554
No 228
>PF03283 PAE: Pectinacetylesterase
Probab=91.58 E-value=1.7 Score=27.82 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCC-CCCceEEEEeChhHHHHHHHHHh----CCCcccEEEEecc
Q psy7212 13 KVKHRYFCEEVSAGI-PSDRIVIGGFSQGGALALYSALT----YPKKLAGVVALSC 63 (75)
Q Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~l~G~S~Gg~~a~~~a~~----~p~~~~~~v~~~~ 63 (75)
.-+.++++.+...++ +.++++|.|.|.||.-++..+.. .|..++-..+.++
T Consensus 138 ~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d~~~~~lp~~~~v~~~~Ds 193 (361)
T PF03283_consen 138 RILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHADYVRDRLPSSVKVKCLSDS 193 (361)
T ss_pred HHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHHHHHHHhccCceEEEeccc
Confidence 345667777665444 45789999999999888776643 5643443333333
No 229
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=90.68 E-value=1.5 Score=23.06 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHHHcCCCCCceEEEEeChhH--HHHHHHHHhCCCcccEEEE
Q psy7212 10 GIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGG--ALALYSALTYPKKLAGVVA 60 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg--~~a~~~a~~~p~~~~~~v~ 60 (75)
.-...+.++++. .+..+++++|-|--. -+-..++.++|+++.++.+
T Consensus 50 ~K~~~i~~i~~~-----fP~~kfiLIGDsgq~DpeiY~~ia~~~P~~i~ai~I 97 (100)
T PF09949_consen 50 HKRDNIERILRD-----FPERKFILIGDSGQHDPEIYAEIARRFPGRILAIYI 97 (100)
T ss_pred HHHHHHHHHHHH-----CCCCcEEEEeeCCCcCHHHHHHHHHHCCCCEEEEEE
Confidence 334556666666 688899999988554 3335567889999888754
No 230
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=89.93 E-value=1.3 Score=28.45 Aligned_cols=39 Identities=23% Similarity=0.059 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHh
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
.+.|......+...--+.++|+++|+|-|++.+--+|..
T Consensus 104 ~~nI~~AYrFL~~~yepGD~Iy~FGFSRGAf~aRVlagm 142 (423)
T COG3673 104 VQNIREAYRFLIFNYEPGDEIYAFGFSRGAFSARVLAGM 142 (423)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEeeccchhHHHHHHHHH
Confidence 344444444444333366899999999999998777653
No 231
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=89.69 E-value=1.2 Score=26.60 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=24.9
Q ss_pred HHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCC
Q psy7212 18 YFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p 52 (75)
+++.+.+.++..+.-.+.|-|.|+.++..++...+
T Consensus 17 Vl~~L~e~gi~~~~~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 17 VLSLLIEAGVINETTPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred HHHHHHHcCCCCCCCEEEEEcHHHHHHHHHHcCCC
Confidence 44444444554445689999999999999988654
No 232
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=88.37 E-value=1.6 Score=26.89 Aligned_cols=32 Identities=31% Similarity=0.239 Sum_probs=22.4
Q ss_pred HHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhC
Q psy7212 18 YFCEEVSAGIPSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
+++.+.+.+++ -=.+.|-|+|+.++..|+...
T Consensus 28 VL~aLeE~gi~--~d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 28 ILQALEEAGIP--IDAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred HHHHHHHcCCC--ccEEEEECHHHHHHHHHHcCC
Confidence 34444334444 348899999999999998763
No 233
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=88.25 E-value=1.2 Score=27.16 Aligned_cols=22 Identities=27% Similarity=0.142 Sum_probs=17.6
Q ss_pred CCCceEEEEeChhHHHHHHHHH
Q psy7212 28 PSDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
+.++-.++|||+|-+.|...+.
T Consensus 80 Gi~p~~~~GhSlGE~aA~~~ag 101 (298)
T smart00827 80 GVRPDAVVGHSLGEIAAAYVAG 101 (298)
T ss_pred CCcccEEEecCHHHHHHHHHhC
Confidence 3456799999999998877664
No 234
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=87.97 E-value=1.3 Score=27.14 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=17.8
Q ss_pred CCCceEEEEeChhHHHHHHHHH
Q psy7212 28 PSDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
+.++..++|||+|=+.|...+.
T Consensus 74 g~~P~~v~GhS~GE~aAa~~aG 95 (295)
T TIGR03131 74 LPRPSAVAGYSVGEYAAAVVAG 95 (295)
T ss_pred CCCCcEEeecCHHHHHHHHHhC
Confidence 3467899999999988887664
No 235
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=86.96 E-value=0.7 Score=28.61 Aligned_cols=23 Identities=26% Similarity=0.083 Sum_probs=18.2
Q ss_pred CCCceEEEEeChhHHHHHHHHHh
Q psy7212 28 PSDRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
+..+-.++|||+|=+.|+..+..
T Consensus 82 Gi~P~~v~GhSlGE~aA~~aaG~ 104 (318)
T PF00698_consen 82 GIKPDAVIGHSLGEYAALVAAGA 104 (318)
T ss_dssp THCESEEEESTTHHHHHHHHTTS
T ss_pred ccccceeeccchhhHHHHHHCCc
Confidence 45678899999999888876643
No 236
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=86.34 E-value=1.5 Score=29.34 Aligned_cols=55 Identities=24% Similarity=0.117 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHH----HcCCCCCceEEEEeChhHHHHHHHHHhCCC---cccEEEEecccC
Q psy7212 11 IGKVKHRYFCEEV----SAGIPSDRIVIGGFSQGGALALYSALTYPK---KLAGVVALSCWL 65 (75)
Q Consensus 11 ~~~~~~~~~~~~~----~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~---~~~~~v~~~~~~ 65 (75)
..+|+..+.+.+. ++.-...+.+|+|-|.||.-+..+|...-+ ..++++.+++.+
T Consensus 175 ~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlssvl 236 (498)
T COG2939 175 AGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSVL 236 (498)
T ss_pred cchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHHhccccCCceEeeeee
Confidence 3445444443332 333334689999999999888777754322 345666655544
No 237
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=86.25 E-value=0.84 Score=27.42 Aligned_cols=18 Identities=33% Similarity=0.265 Sum_probs=14.0
Q ss_pred CCCceEEEEeChhHHHHH
Q psy7212 28 PSDRIVIGGFSQGGALAL 45 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~ 45 (75)
+.+.|+++|||+|..=-.
T Consensus 233 ~i~~I~i~GhSl~~~D~~ 250 (270)
T PF14253_consen 233 DIDEIIIYGHSLGEVDYP 250 (270)
T ss_pred CCCEEEEEeCCCchhhHH
Confidence 457899999999985443
No 238
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=86.21 E-value=2.4 Score=25.17 Aligned_cols=22 Identities=23% Similarity=0.125 Sum_probs=18.4
Q ss_pred ceEEEEeChhHHHHHHHHHhCC
Q psy7212 31 RIVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a~~~p 52 (75)
.-.+.|-|.|+.++..++...+
T Consensus 29 ~~~i~GtSaGAi~aa~~a~g~~ 50 (221)
T cd07210 29 PSAISGTSAGALVGGLFASGIS 50 (221)
T ss_pred ceEEEEeCHHHHHHHHHHcCCC
Confidence 4479999999999999987553
No 239
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=86.18 E-value=2.3 Score=26.74 Aligned_cols=22 Identities=27% Similarity=0.135 Sum_probs=18.3
Q ss_pred CCCceEEEEeChhHHHHHHHHH
Q psy7212 28 PSDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
+.++.++.|||+|=+.|+..+.
T Consensus 83 ~~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 83 GVKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred CCCCceeecccHhHHHHHHHcc
Confidence 5567899999999998887665
No 240
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=86.16 E-value=0.42 Score=31.37 Aligned_cols=59 Identities=22% Similarity=0.184 Sum_probs=48.0
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 67 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~ 67 (75)
++++.+.|.+.+++.+.+. -..+++--|-|=||+.++.+=.-||+.+.+.|....+.+.
T Consensus 113 ti~QAA~D~Hri~~A~K~i--Y~~kWISTG~SKGGmTa~y~rrFyP~DVD~tVaYVAP~~~ 171 (448)
T PF05576_consen 113 TIWQAASDQHRIVQAFKPI--YPGKWISTGGSKGGMTAVYYRRFYPDDVDGTVAYVAPNDV 171 (448)
T ss_pred cHhHhhHHHHHHHHHHHhh--ccCCceecCcCCCceeEEEEeeeCCCCCCeeeeeeccccc
Confidence 4556788999999877432 2358999999999999998888899999999988877654
No 241
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=85.60 E-value=1.6 Score=28.55 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=24.3
Q ss_pred HHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCc
Q psy7212 18 YFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKK 54 (75)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~ 54 (75)
+++.+...++. +=++.|-|.|+.+|..++.+.++.
T Consensus 91 VLkaL~E~gl~--p~vIsGTSaGAivAal~as~~~ee 125 (421)
T cd07230 91 VLKALFEANLL--PRIISGSSAGSIVAAILCTHTDEE 125 (421)
T ss_pred HHHHHHHcCCC--CCEEEEECHHHHHHHHHHcCCHHH
Confidence 34444444444 347999999999999998865543
No 242
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=85.25 E-value=1.9 Score=26.05 Aligned_cols=21 Identities=29% Similarity=0.105 Sum_probs=17.3
Q ss_pred CCceEEEEeChhHHHHHHHHH
Q psy7212 29 SDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
.++-.++|||+|=+.|...+.
T Consensus 82 i~p~~v~GhS~GE~aAa~~aG 102 (290)
T TIGR00128 82 LKPDFAAGHSLGEYSALVAAG 102 (290)
T ss_pred CCCCEEeecCHHHHHHHHHhC
Confidence 567799999999988877664
No 243
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=85.20 E-value=3.1 Score=24.44 Aligned_cols=32 Identities=28% Similarity=0.235 Sum_probs=22.8
Q ss_pred HHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCC
Q psy7212 19 FCEEVSAGIPSDRIVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 19 ~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p 52 (75)
++.+.+.++ ..=.+.|-|.|+.++..++...+
T Consensus 17 l~aL~e~g~--~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 17 LKALAEAGI--EPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHcCC--CCCEEEEECHHHHHHHHHHcCCc
Confidence 333333444 34489999999999999998764
No 244
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=84.53 E-value=3.9 Score=23.03 Aligned_cols=23 Identities=26% Similarity=0.114 Sum_probs=19.4
Q ss_pred CceEEEEeChhHHHHHHHHHhCC
Q psy7212 30 DRIVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~~p 52 (75)
..-.+.|-|.|+.++..++...+
T Consensus 26 ~~d~v~GtSaGAi~aa~~a~g~~ 48 (172)
T cd07198 26 LIDIIAGTSAGAIVAALLASGRD 48 (172)
T ss_pred CCCEEEEECHHHHHHHHHHcCCC
Confidence 35689999999999999998654
No 245
>KOG1282|consensus
Probab=84.21 E-value=5.9 Score=26.40 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=45.0
Q ss_pred CcccHHHHHHHHHHHHHH--cCCCCCceEEEEeChhHHHHHHHHHh----C------CCcccEEEEecccCCCCCCC
Q psy7212 7 QGPGIGKVKHRYFCEEVS--AGIPSDRIVIGGFSQGGALALYSALT----Y------PKKLAGVVALSCWLPMHKSF 71 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~G~S~Gg~~a~~~a~~----~------p~~~~~~v~~~~~~~~~~~~ 71 (75)
..+..++|...++...+. .+....+++|.|-|.+|.....+|.+ . +-.++++++-+|..+.....
T Consensus 143 ~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGNg~td~~~~~ 219 (454)
T KOG1282|consen 143 GDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGNGLTDPEIDY 219 (454)
T ss_pred CcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEecCcccCccccc
Confidence 334567777777776663 23556789999999999766666643 2 13578999888887665443
No 246
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=84.20 E-value=3.6 Score=23.14 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=17.9
Q ss_pred ceEEEEeChhHHHHHHHHHhC
Q psy7212 31 RIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
.=.+.|-|.|+.++..++...
T Consensus 29 ~d~i~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 29 IDIVSGTSAGAIVGALYAAGY 49 (175)
T ss_pred eeEEEEECHHHHHHHHHHcCC
Confidence 348999999999999998654
No 247
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=83.09 E-value=1.5 Score=27.51 Aligned_cols=20 Identities=40% Similarity=0.353 Sum_probs=17.4
Q ss_pred EEEEeChhHHHHHHHHHhCC
Q psy7212 33 VIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 33 ~l~G~S~Gg~~a~~~a~~~p 52 (75)
.+.|-|.||.+|..++..++
T Consensus 35 ~i~GTStGgiIA~~la~g~s 54 (312)
T cd07212 35 WIAGTSTGGILALALLHGKS 54 (312)
T ss_pred EEEeeChHHHHHHHHHcCCC
Confidence 69999999999999987543
No 248
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=82.81 E-value=4 Score=25.53 Aligned_cols=32 Identities=28% Similarity=0.273 Sum_probs=22.6
Q ss_pred HHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhC
Q psy7212 18 YFCEEVSAGIPSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
+++.+...++. .=.++|-|+|+.++..|+..+
T Consensus 33 vL~aLee~gi~--~d~v~GtSaGAi~ga~ya~g~ 64 (306)
T cd07225 33 VIKALEEAGIP--VDMVGGTSIGAFIGALYAEER 64 (306)
T ss_pred HHHHHHHcCCC--CCEEEEECHHHHHHHHHHcCC
Confidence 33443344443 458899999999999999764
No 249
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=82.12 E-value=4.8 Score=22.90 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=18.6
Q ss_pred ceEEEEeChhHHHHHHHHHhCC
Q psy7212 31 RIVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a~~~p 52 (75)
.=.+.|-|.||.++..++..++
T Consensus 28 ~d~i~GtSaGai~aa~~a~g~~ 49 (194)
T cd07207 28 KKRVAGTSAGAITAALLALGYS 49 (194)
T ss_pred cceEEEECHHHHHHHHHHcCCC
Confidence 4689999999999999987653
No 250
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=81.36 E-value=5.2 Score=24.11 Aligned_cols=21 Identities=24% Similarity=0.146 Sum_probs=18.1
Q ss_pred eEEEEeChhHHHHHHHHHhCC
Q psy7212 32 IVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 32 ~~l~G~S~Gg~~a~~~a~~~p 52 (75)
-.+.|-|.|+.++..++...+
T Consensus 33 ~~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 33 RRIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred CEEEEEcHHHHHHHHHHhCCC
Confidence 389999999999999988654
No 251
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=80.96 E-value=5.8 Score=23.97 Aligned_cols=21 Identities=19% Similarity=-0.020 Sum_probs=18.0
Q ss_pred eEEEEeChhHHHHHHHHHhCC
Q psy7212 32 IVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 32 ~~l~G~S~Gg~~a~~~a~~~p 52 (75)
=.+.|-|.|+.++..++...+
T Consensus 29 d~i~GtSaGAi~a~~~~~g~~ 49 (266)
T cd07208 29 DLVIGVSAGALNAASYLSGQR 49 (266)
T ss_pred CEEEEECHHHHhHHHHHhCCc
Confidence 389999999999999887654
No 252
>PRK10279 hypothetical protein; Provisional
Probab=79.45 E-value=5.4 Score=24.97 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=23.1
Q ss_pred HHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCC
Q psy7212 18 YFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p 52 (75)
+++.+.+.+++ .-.+.|-|+|+.++..|+....
T Consensus 23 VL~aL~E~gi~--~d~i~GtS~GAlvga~yA~g~~ 55 (300)
T PRK10279 23 VINALKKVGIE--IDIVAGCSIGSLVGAAYACDRL 55 (300)
T ss_pred HHHHHHHcCCC--cCEEEEEcHHHHHHHHHHcCCh
Confidence 34443344443 5689999999999999987543
No 253
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=78.52 E-value=6.1 Score=24.50 Aligned_cols=25 Identities=28% Similarity=0.143 Sum_probs=20.6
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~p 52 (75)
+.+.-.+.|-|+|+.++..+|..+.
T Consensus 37 gi~~~~iaGtS~GAiva~l~A~g~~ 61 (306)
T COG1752 37 GIPIDVIAGTSAGAIVAALYAAGMD 61 (306)
T ss_pred CCCccEEEecCHHHHHHHHHHcCCC
Confidence 3456789999999999999998653
No 254
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.09 E-value=5 Score=25.16 Aligned_cols=37 Identities=11% Similarity=0.013 Sum_probs=26.0
Q ss_pred CCceEEEEeChhHHHHHHHH---HhCCCcccEEEEecccC
Q psy7212 29 SDRIVIGGFSQGGALALYSA---LTYPKKLAGVVALSCWL 65 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~a~~~a---~~~p~~~~~~v~~~~~~ 65 (75)
..|+++.|.|+|++-+-..- ...-+++.+.+..+++.
T Consensus 108 RPkL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP~ 147 (289)
T PF10081_consen 108 RPKLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPPF 147 (289)
T ss_pred CCeEEEeccCccccchhhhhccHHHhhhhcceEEEeCCCC
Confidence 35699999999997654432 22335688888888764
No 255
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=78.02 E-value=7.4 Score=23.59 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=17.2
Q ss_pred EEEEeChhHHHHHHHHHhCC
Q psy7212 33 VIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 33 ~l~G~S~Gg~~a~~~a~~~p 52 (75)
.+.|-|.|+.++..++...+
T Consensus 33 ~i~GtSAGAl~aa~~a~g~~ 52 (245)
T cd07218 33 KISGASAGALAACCLLCDLP 52 (245)
T ss_pred eEEEEcHHHHHHHHHHhCCc
Confidence 39999999999999987654
No 256
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=77.94 E-value=6.3 Score=24.81 Aligned_cols=32 Identities=19% Similarity=0.064 Sum_probs=21.7
Q ss_pred HHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhC
Q psy7212 18 YFCEEVSAGIPSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
+++.+.+.++. +-++.|-|.|+.++..++...
T Consensus 87 vl~aL~e~~l~--~~~i~GtSaGAi~aa~~~~~~ 118 (298)
T cd07206 87 VVKALWEQDLL--PRVISGSSAGAIVAALLGTHT 118 (298)
T ss_pred HHHHHHHcCCC--CCEEEEEcHHHHHHHHHHcCC
Confidence 33443334443 347999999999999888653
No 257
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=77.71 E-value=8.1 Score=21.51 Aligned_cols=19 Identities=21% Similarity=0.043 Sum_probs=16.2
Q ss_pred CceEEEEeChhHHHHHHHH
Q psy7212 30 DRIVIGGFSQGGALALYSA 48 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a 48 (75)
.--.+.|.|.|+.++..++
T Consensus 28 ~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 28 CVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred CCCEEEEEcHHHHHHHHHh
Confidence 3458899999999998887
No 258
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=77.36 E-value=5.8 Score=24.96 Aligned_cols=18 Identities=39% Similarity=0.206 Sum_probs=14.7
Q ss_pred eEEEEeChhHHHHHHHHH
Q psy7212 32 IVIGGFSQGGALALYSAL 49 (75)
Q Consensus 32 ~~l~G~S~Gg~~a~~~a~ 49 (75)
-.++|||+|=+.|...+.
T Consensus 126 ~~~~GHSlGE~aA~~~AG 143 (343)
T PLN02752 126 DVCAGLSLGEYTALVFAG 143 (343)
T ss_pred CeeeeccHHHHHHHHHhC
Confidence 368999999988877764
No 259
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=75.61 E-value=5.9 Score=26.94 Aligned_cols=25 Identities=20% Similarity=0.120 Sum_probs=19.7
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhC
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
++.++-.++|||+|=+.+...+.-.
T Consensus 262 ~GI~Pdav~GHSlGE~aAa~aAGvl 286 (538)
T TIGR02816 262 FAIKPDFALGYSKGEASMWASLGVW 286 (538)
T ss_pred cCCCCCEEeecCHHHHHHHHHhCCC
Confidence 4566779999999998888777543
No 260
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=75.42 E-value=17 Score=25.35 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEe------ChhHHHHHHHHHhCCCcccEEEEecc
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGF------SQGGALALYSALTYPKKLAGVVALSC 63 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~------S~Gg~~a~~~a~~~p~~~~~~v~~~~ 63 (75)
++.+...++...+ ..++++++|| +.|+.+++..-+..-++ .+.+.++|
T Consensus 323 aRvis~al~d~i~---e~d~VfImGHk~pDmDalGsAig~~~~A~~~~~-~a~~v~dp 376 (655)
T COG3887 323 ARVISTALSDIIK---ESDNVFIMGHKFPDMDALGSAIGMQKFASMNNK-EAFAVLDP 376 (655)
T ss_pred HHHHHHHHHHHHh---hcCcEEEEccCCCChHHHHHHHHHHHHHHhccc-ccEEEECc
Confidence 3444444444332 2478999999 78999998776655443 56666664
No 261
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.17 E-value=3.6 Score=24.05 Aligned_cols=38 Identities=21% Similarity=0.140 Sum_probs=28.1
Q ss_pred CceEEEEeChhHHHHHHHHHhCCCcccEEEEecc-cCCCCC
Q psy7212 30 DRIVIGGFSQGGALALYSALTYPKKLAGVVALSC-WLPMHK 69 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~-~~~~~~ 69 (75)
+.+.++.+|||-.+|-+..+-.+ ++..+.+++ .++..+
T Consensus 57 ~hirlvAwSMGVwvAeR~lqg~~--lksatAiNGTgLpcDd 95 (214)
T COG2830 57 RHIRLVAWSMGVWVAERVLQGIR--LKSATAINGTGLPCDD 95 (214)
T ss_pred hhhhhhhhhHHHHHHHHHHhhcc--ccceeeecCCCCCccc
Confidence 56899999999999999888775 566666664 444443
No 262
>KOG4389|consensus
Probab=74.25 E-value=3 Score=28.33 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=32.3
Q ss_pred HHHHHH-HcCCCCCceEEEEeChhHHHHHHHHHhC--CCcccEEEEecccCCCC
Q psy7212 18 YFCEEV-SAGIPSDRIVIGGFSQGGALALYSALTY--PKKLAGVVALSCWLPMH 68 (75)
Q Consensus 18 ~~~~~~-~~~~~~~~~~l~G~S~Gg~~a~~~a~~~--p~~~~~~v~~~~~~~~~ 68 (75)
++++.+ .-|.+.+++.|+|.|.|+.-...-...- ...++..|+-|+.+.-.
T Consensus 205 WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~~p 258 (601)
T KOG4389|consen 205 WVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLNNP 258 (601)
T ss_pred HHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCCCC
Confidence 343333 4566889999999999996554333321 13577777777765433
No 263
>PRK02399 hypothetical protein; Provisional
Probab=73.88 E-value=20 Score=23.67 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 62 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~ 62 (75)
+.+-...+++.+.+.+ +.+-++-+|-|.|..++...+...|--+-+++...
T Consensus 79 M~~ga~~~v~~L~~~g-~i~gviglGGs~GT~lat~aMr~LPiG~PKlmVST 129 (406)
T PRK02399 79 MAEGAAAFVRELYERG-DVAGVIGLGGSGGTALATPAMRALPIGVPKLMVST 129 (406)
T ss_pred HHHHHHHHHHHHHhcC-CccEEEEecCcchHHHHHHHHHhCCCCCCeEEEEc
Confidence 3444555555444443 45678999999999999999999987666665543
No 264
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=73.39 E-value=14 Score=20.88 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=18.6
Q ss_pred ceEEEEeChhHHHHHHHHHhCC
Q psy7212 31 RIVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a~~~p 52 (75)
.=.+.|-|.|+.++..++...+
T Consensus 29 ~d~i~GtSaGAi~aa~~a~g~~ 50 (175)
T cd07228 29 IDIIAGSSIGALVGALYAAGHL 50 (175)
T ss_pred eeEEEEeCHHHHHHHHHHcCCC
Confidence 4589999999999999987654
No 265
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=72.68 E-value=5.5 Score=21.88 Aligned_cols=21 Identities=43% Similarity=0.355 Sum_probs=16.7
Q ss_pred ceEEEEeChhHHHHHHHHHhC
Q psy7212 31 RIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
--.+.|-|.||.++..++...
T Consensus 28 ~d~i~GtS~Gal~a~~~~~~~ 48 (204)
T PF01734_consen 28 FDVISGTSAGALNAALLALGY 48 (204)
T ss_dssp -SEEEEECCHHHHHHHHHTC-
T ss_pred ccEEEEcChhhhhHHHHHhCC
Confidence 357999999999998887753
No 266
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=72.67 E-value=4.8 Score=26.32 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=25.0
Q ss_pred HHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcc
Q psy7212 17 RYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKL 55 (75)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~ 55 (75)
.+++.+.+.++. +=++.|-|.|+.+|..++.+.++.+
T Consensus 84 GVlkaL~e~gll--p~iI~GtSAGAivaalla~~t~~el 120 (407)
T cd07232 84 GVVKALLDADLL--PNVISGTSGGSLVAALLCTRTDEEL 120 (407)
T ss_pred HHHHHHHhCCCC--CCEEEEECHHHHHHHHHHcCCHHHH
Confidence 344444444443 4479999999999999998655433
No 267
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=72.43 E-value=4.9 Score=25.65 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=16.3
Q ss_pred EEEEeChhHHHHHHHHHh
Q psy7212 33 VIGGFSQGGALALYSALT 50 (75)
Q Consensus 33 ~l~G~S~Gg~~a~~~a~~ 50 (75)
.+.|-|.||.+|..++..
T Consensus 44 lIaGTStGgIIAa~la~g 61 (344)
T cd07217 44 FVGGTSTGSIIAACIALG 61 (344)
T ss_pred EEEEecHHHHHHHHHHcC
Confidence 799999999999999864
No 268
>KOG4388|consensus
Probab=72.33 E-value=6.8 Score=27.43 Aligned_cols=41 Identities=29% Similarity=0.326 Sum_probs=29.4
Q ss_pred cCCCCCceEEEEeChhHHHHHHHHHhC---C-CcccEEEEecccC
Q psy7212 25 AGIPSDRIVIGGFSQGGALALYSALTY---P-KKLAGVVALSCWL 65 (75)
Q Consensus 25 ~~~~~~~~~l~G~S~Gg~~a~~~a~~~---p-~~~~~~v~~~~~~ 65 (75)
.+...+||+++|.|.||++++..+.+. . ...+++++.-++.
T Consensus 464 lG~TgEriv~aGDSAGgNL~~~VaLr~i~~gvRvPDGl~laY~pt 508 (880)
T KOG4388|consen 464 LGSTGERIVLAGDSAGGNLCFTVALRAIAYGVRVPDGLMLAYPPT 508 (880)
T ss_pred hCcccceEEEeccCCCcceeehhHHHHHHhCCCCCCceEEecChh
Confidence 356679999999999999888777653 1 1246777665544
No 269
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=71.75 E-value=22 Score=23.49 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 62 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~ 62 (75)
+.+-...++..+.+.+ ..+-++-+|-|.|..++...+...|--+-++++..
T Consensus 77 M~~ga~~~v~~l~~~g-~i~Gvi~~GGs~GT~lat~aMr~LPiG~PKlmVST 127 (403)
T PF06792_consen 77 MARGAARFVSDLYDEG-KIDGVIGIGGSGGTALATAAMRALPIGFPKLMVST 127 (403)
T ss_pred HHHHHHHHHHHHHhcC-CccEEEEecCCccHHHHHHHHHhCCCCCCeEEEEc
Confidence 3444555555554433 45678899999999999999999887666666543
No 270
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=70.98 E-value=19 Score=21.97 Aligned_cols=44 Identities=7% Similarity=0.058 Sum_probs=28.4
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhC--CCcccEEEEecccCCCCCC
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALTY--PKKLAGVVALSCWLPMHKS 70 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~~--p~~~~~~v~~~~~~~~~~~ 70 (75)
.+.+++.++||.||=.-..-|.... --.++.+|-+++...+.++
T Consensus 53 YKGk~iSvmg~GmGipS~sIY~~ELi~~y~Vk~iIRvGt~Gal~~~ 98 (236)
T COG0813 53 YKGKKISVMGHGMGIPSISIYSRELITDYGVKKIIRVGTCGALSED 98 (236)
T ss_pred ecCcEEEEEEecCCCccHHHHHHHHHHHhCcceEEEEEccccccCC
Confidence 4678999999999975554444321 1247777777765554443
No 271
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=70.58 E-value=5.6 Score=24.49 Aligned_cols=19 Identities=42% Similarity=0.557 Sum_probs=17.1
Q ss_pred EEEEeChhHHHHHHHHHhC
Q psy7212 33 VIGGFSQGGALALYSALTY 51 (75)
Q Consensus 33 ~l~G~S~Gg~~a~~~a~~~ 51 (75)
.++|-|.||.+|..++..+
T Consensus 37 ~i~GTSaGaiia~~la~g~ 55 (288)
T cd07213 37 LFAGTSAGSLIALGLALGY 55 (288)
T ss_pred EEEEeCHHHHHHHHHHcCc
Confidence 7999999999999998754
No 272
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=68.88 E-value=7.4 Score=25.44 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=23.4
Q ss_pred HHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCc
Q psy7212 19 FCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKK 54 (75)
Q Consensus 19 ~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~ 54 (75)
++.+...++. +-++.|-|.|+.+|..++.+.++.
T Consensus 102 ~kaL~e~gl~--p~~i~GtS~Gaivaa~~a~~~~~e 135 (391)
T cd07229 102 VKALWLRGLL--PRIITGTATGALIAALVGVHTDEE 135 (391)
T ss_pred HHHHHHcCCC--CceEEEecHHHHHHHHHHcCCHHH
Confidence 3333344443 447999999999999999865443
No 273
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=68.23 E-value=5.6 Score=24.63 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.4
Q ss_pred EEEEeChhHHHHHHHHH
Q psy7212 33 VIGGFSQGGALALYSAL 49 (75)
Q Consensus 33 ~l~G~S~Gg~~a~~~a~ 49 (75)
.++|-|.||.+|..++.
T Consensus 44 li~GTStGgiiA~~la~ 60 (308)
T cd07211 44 YICGVSTGAILAFLLGL 60 (308)
T ss_pred EEEecChhHHHHHHHhc
Confidence 58999999999998875
No 274
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=68.23 E-value=6.7 Score=25.01 Aligned_cols=32 Identities=22% Similarity=0.097 Sum_probs=21.8
Q ss_pred HHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhC
Q psy7212 18 YFCEEVSAGIPSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 18 ~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
+++.+.+.++. +-++.|-|.|+.+|..++...
T Consensus 86 VlkaL~e~gl~--p~~i~GsSaGAivaa~~~~~t 117 (323)
T cd07231 86 VVRTLVEHQLL--PRVIAGSSVGSIVCAIIATRT 117 (323)
T ss_pred HHHHHHHcCCC--CCEEEEECHHHHHHHHHHcCC
Confidence 34444344443 446999999999999888753
No 275
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=67.05 E-value=32 Score=22.41 Aligned_cols=37 Identities=19% Similarity=0.360 Sum_probs=30.8
Q ss_pred CCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecc
Q psy7212 26 GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 63 (75)
Q Consensus 26 ~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~ 63 (75)
+.+.+++++.|.|==|..+...|. .+++|.+++-+.-
T Consensus 168 ~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vi 204 (367)
T PF10142_consen 168 GVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVI 204 (367)
T ss_pred CCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEE
Confidence 567899999999999999988888 5568888887653
No 276
>PRK13938 phosphoheptose isomerase; Provisional
Probab=66.54 E-value=23 Score=20.78 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=21.7
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~p 52 (75)
...+++++|.+-.|.+|..++.+..
T Consensus 44 ~g~rI~i~G~G~S~~~A~~fa~~L~ 68 (196)
T PRK13938 44 AGARVFMCGNGGSAADAQHFAAELT 68 (196)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHcC
Confidence 4578999999999999999998764
No 277
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=66.39 E-value=14 Score=21.62 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=25.7
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCceEEEEeCh----hHHHHHHHHHhCC
Q psy7212 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQ----GGALALYSALTYP 52 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~----Gg~~a~~~a~~~p 52 (75)
+.+++.+.++++. .+ ..++++|+|. |..++..+|.+..
T Consensus 94 e~~a~al~~~i~~-----~~-p~lVL~~~t~~~~~grdlaprlAarLg 135 (202)
T cd01714 94 LATAKALAAAIKK-----IG-VDLILTGKQSIDGDTGQVGPLLAELLG 135 (202)
T ss_pred HHHHHHHHHHHHH-----hC-CCEEEEcCCcccCCcCcHHHHHHHHhC
Confidence 3344445554444 23 4699999998 8889999988764
No 278
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=66.34 E-value=21 Score=20.09 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhC
Q psy7212 13 KVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
+++.++++.+ ...++++++|....+.+|..+..+.
T Consensus 18 ~~~~~~~~~l----~~a~~I~i~G~G~S~~~A~~~~~~l 52 (179)
T TIGR03127 18 EELDKLADKI----IKAKRIFVAGAGRSGLVGKAFAMRL 52 (179)
T ss_pred HHHHHHHHHH----HhCCEEEEEecCHHHHHHHHHHHHH
Confidence 3455555543 2346899999998888887777654
No 279
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=63.60 E-value=20 Score=21.63 Aligned_cols=17 Identities=24% Similarity=0.176 Sum_probs=15.6
Q ss_pred EEEEeChhHHHHHHHHH
Q psy7212 33 VIGGFSQGGALALYSAL 49 (75)
Q Consensus 33 ~l~G~S~Gg~~a~~~a~ 49 (75)
.+.|-|.|+.++..++.
T Consensus 34 ~i~GtSaGAl~aa~~a~ 50 (246)
T cd07222 34 RFAGASAGSLVAAVLLT 50 (246)
T ss_pred EEEEECHHHHHHHHHhc
Confidence 79999999999999984
No 280
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=63.45 E-value=25 Score=19.87 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhC
Q psy7212 14 VKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
.+.++++.+ ...++++++|....+.+|..+..+.
T Consensus 22 ~l~~~~~~i----~~a~~I~i~G~G~S~~~A~~~~~~l 55 (179)
T cd05005 22 ELDKLISAI----LNAKRIFVYGAGRSGLVAKAFAMRL 55 (179)
T ss_pred HHHHHHHHH----HhCCeEEEEecChhHHHHHHHHHHH
Confidence 344444443 2346899999988888887777654
No 281
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=62.79 E-value=25 Score=21.49 Aligned_cols=21 Identities=24% Similarity=-0.043 Sum_probs=17.7
Q ss_pred eEEEEeChhHHHHHHHHHhCC
Q psy7212 32 IVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 32 ~~l~G~S~Gg~~a~~~a~~~p 52 (75)
-.+.|-|.|+.++..++...+
T Consensus 38 ~~i~G~SAGAl~aa~~a~g~~ 58 (249)
T cd07220 38 RKIYGASAGALTATALVTGVC 58 (249)
T ss_pred CeEEEEcHHHHHHHHHHcCCC
Confidence 568899999999999887654
No 282
>PF08250 Sperm_act_pep: Sperm-activating peptides; InterPro: IPR013254 The sperm-activating peptides (SAPs) are isolated in egg-conditioned media (egg jelly) of sea urchins. SAPs have several effects on sea urchin spermatozoa: stimulate sperm respiration and motility through intracellular alkalinization, transient elevation of cAMP, cGMP and Ca2+ levels in sperm cells [, ].
Probab=62.50 E-value=1.7 Score=13.31 Aligned_cols=6 Identities=83% Similarity=1.520 Sum_probs=2.7
Q ss_pred EeChhH
Q psy7212 36 GFSQGG 41 (75)
Q Consensus 36 G~S~Gg 41 (75)
|+++||
T Consensus 1 gf~l~G 6 (10)
T PF08250_consen 1 GFSLGG 6 (10)
T ss_pred Cccccc
Confidence 344444
No 283
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=60.89 E-value=20 Score=18.92 Aligned_cols=30 Identities=23% Similarity=0.175 Sum_probs=21.0
Q ss_pred ceEEEE-eChhHHHHHHHHHhCCCcccEEEEe
Q psy7212 31 RIVIGG-FSQGGALALYSALTYPKKLAGVVAL 61 (75)
Q Consensus 31 ~~~l~G-~S~Gg~~a~~~a~~~p~~~~~~v~~ 61 (75)
|+.++| ..+.|.-.+.+..+||. +.-+.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~-~e~~~~~ 31 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD-FELVALV 31 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST-EEEEEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC-ccEEEee
Confidence 467788 88888888888888875 4433333
No 284
>PRK13690 hypothetical protein; Provisional
Probab=60.46 E-value=25 Score=20.67 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHHHHH-HcCCCCCceEEEEeChh
Q psy7212 9 PGIGKVKHRYFCEEV-SAGIPSDRIVIGGFSQG 40 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~G 40 (75)
+.+.+++...++.++ ...++..+++++|-|-.
T Consensus 4 ~~i~~~~~~~~~El~~~a~l~~g~i~VvGcSTS 36 (184)
T PRK13690 4 EEIKKQTRQILEELLEQANLKPGQIFVLGCSTS 36 (184)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCEEEEecchH
Confidence 446677777777776 45677788999998853
No 285
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=59.40 E-value=33 Score=20.19 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhC
Q psy7212 13 KVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
+.+.+..+.+...-....+++++|-.-.+.+|..++.+.
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l 63 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASM 63 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHH
Confidence 444444444432213457899999999999999998753
No 286
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=58.61 E-value=8.4 Score=23.93 Aligned_cols=17 Identities=41% Similarity=0.686 Sum_probs=15.2
Q ss_pred EEEEeChhHHHHHHHHH
Q psy7212 33 VIGGFSQGGALALYSAL 49 (75)
Q Consensus 33 ~l~G~S~Gg~~a~~~a~ 49 (75)
.++|-|.||.+|..++.
T Consensus 45 li~GTStGgiiA~~l~~ 61 (309)
T cd07216 45 LIGGTSTGGLIAIMLGR 61 (309)
T ss_pred eeeeccHHHHHHHHhcc
Confidence 79999999999998874
No 287
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.89 E-value=35 Score=21.65 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCceEEEEeC--hhHHHHHHHHHh
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDRIVIGGFS--QGGALALYSALT 50 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S--~Gg~~a~~~a~~ 50 (75)
.+.....+.+++++. ...+..+++.++|.| +|-.++..+..+
T Consensus 139 ~PcTp~aii~lL~~~-~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ 182 (301)
T PRK14194 139 TPCTPSGCLRLLEDT-CGDLTGKHAVVIGRSNIVGKPMAALLLQA 182 (301)
T ss_pred CCCcHHHHHHHHHHh-CCCCCCCEEEEECCCCccHHHHHHHHHHC
Confidence 345566677777653 223456789999997 999999888765
No 288
>PRK13936 phosphoheptose isomerase; Provisional
Probab=57.68 E-value=36 Score=19.80 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=20.6
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhCC
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~~p 52 (75)
....+++++|.+-.+.+|..++.+..
T Consensus 41 ~~a~~I~i~G~G~S~~~A~~~~~~l~ 66 (197)
T PRK13936 41 LNEGKILACGNGGSAADAQHFSAELL 66 (197)
T ss_pred HCCCEEEEEeCcHhHHHHHHHHHHcc
Confidence 35578999999988998888886543
No 289
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=57.58 E-value=11 Score=22.68 Aligned_cols=18 Identities=50% Similarity=0.624 Sum_probs=16.4
Q ss_pred EEEEeChhHHHHHHHHHh
Q psy7212 33 VIGGFSQGGALALYSALT 50 (75)
Q Consensus 33 ~l~G~S~Gg~~a~~~a~~ 50 (75)
.++|-|.||.+|..++..
T Consensus 37 ~i~GtS~G~iia~~l~~~ 54 (258)
T cd07199 37 LIAGTSTGGIIALGLALG 54 (258)
T ss_pred eeeeccHHHHHHHHHhcC
Confidence 699999999999999876
No 290
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=57.26 E-value=51 Score=21.39 Aligned_cols=58 Identities=7% Similarity=-0.059 Sum_probs=38.3
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHH-----HHHHHHHhCCCcccEEEEecccCCCCCC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGA-----LALYSALTYPKKLAGVVALSCWLPMHKS 70 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~-----~a~~~a~~~p~~~~~~v~~~~~~~~~~~ 70 (75)
+.+.+.+.+.++++. ++. +.++++.++=+. +++.-+...|.....+++++++.+-..+
T Consensus 152 dldDYIdyvie~~~~-----~Gp-~~hv~aVCQP~vPvLAAisLM~~~~~p~~PssMtlmGgPIDaR~n 214 (415)
T COG4553 152 DLDDYIDYVIEMINF-----LGP-DAHVMAVCQPTVPVLAAISLMEEDGDPNVPSSMTLMGGPIDARKN 214 (415)
T ss_pred cHHHHHHHHHHHHHH-----hCC-CCcEEEEecCCchHHHHHHHHHhcCCCCCCceeeeecCccccccC
Confidence 445566667777766 443 478888887653 3333344567778999999998865543
No 291
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=57.19 E-value=42 Score=20.36 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=19.5
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
..++++++|....+.+|.++..+.
T Consensus 127 ~a~~I~i~G~G~s~~~A~~~~~~l 150 (278)
T PRK11557 127 SARRIILTGIGASGLVAQNFAWKL 150 (278)
T ss_pred cCCeEEEEecChhHHHHHHHHHHH
Confidence 457899999998888888887653
No 292
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=56.14 E-value=18 Score=22.06 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=18.0
Q ss_pred eEEEEeChhHHHHHHHHHhCC
Q psy7212 32 IVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 32 ~~l~G~S~Gg~~a~~~a~~~p 52 (75)
-.+.|-|.|+.++..++...+
T Consensus 34 ~~i~GtSAGAl~aa~~asg~~ 54 (252)
T cd07221 34 RMFFGASAGALHCVTFLSGLP 54 (252)
T ss_pred CEEEEEcHHHHHHHHHHhCCC
Confidence 469999999999999987654
No 293
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=56.10 E-value=38 Score=19.65 Aligned_cols=37 Identities=11% Similarity=-0.072 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHH
Q psy7212 13 KVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
+.+.+.++.+.+.-....+++++|..-.+.+|..++.
T Consensus 28 ~~i~~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~ 64 (192)
T PRK00414 28 HAIQRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAE 64 (192)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHH
Confidence 4444444444322124478999999999998888874
No 294
>KOG2214|consensus
Probab=55.96 E-value=5.1 Score=27.18 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=22.3
Q ss_pred CCceEEEEeChhHHHHHHHHHhCCCcccE
Q psy7212 29 SDRIVIGGFSQGGALALYSALTYPKKLAG 57 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~ 57 (75)
.=+=++.|-|+||.+|..++.+..+..+.
T Consensus 201 LlP~IIsGsS~GaivAsl~~v~~~eEl~~ 229 (543)
T KOG2214|consen 201 LLPNIISGSSAGAIVASLVGVRSNEELKQ 229 (543)
T ss_pred ccchhhcCCchhHHHHHHHhhcchHHHHH
Confidence 34568899999999999998877554443
No 295
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=55.20 E-value=29 Score=20.11 Aligned_cols=28 Identities=18% Similarity=0.075 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhH
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGG 41 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg 41 (75)
+.+.+.++.+... ....++.++|.|+=.
T Consensus 17 ~~~~~~~~~~~~~---~~~~~iv~lGDSit~ 44 (214)
T cd01820 17 WMSRHERFVAEAK---QKEPDVVFIGDSITQ 44 (214)
T ss_pred HHHHHHHHHHHhh---cCCCCEEEECchHhh
Confidence 4444555544322 234679999999633
No 296
>PRK12467 peptide synthase; Provisional
Probab=55.02 E-value=88 Score=26.76 Aligned_cols=39 Identities=26% Similarity=0.153 Sum_probs=27.0
Q ss_pred CCCceEEEEeChhHHHHHHHHHh---CCCcccEEEEecccCC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALT---YPKKLAGVVALSCWLP 66 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~---~p~~~~~~v~~~~~~~ 66 (75)
+..+..+.|+|+||.++..++.+ ..+.+.-+.++....+
T Consensus 3755 ~~~p~~l~g~s~g~~~a~~~~~~l~~~g~~~~~~~~~~~~~~ 3796 (3956)
T PRK12467 3755 AKGPYGLLGWSLGGTLARLVAELLEREGESEAFLGLFDNTLP 3796 (3956)
T ss_pred cCCCeeeeeeecchHHHHHHHHHHHHcCCceeEEEEEecccc
Confidence 34578999999999999888764 3345555555544443
No 297
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=54.96 E-value=11 Score=23.98 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=16.2
Q ss_pred EEEEeChhHHHHHHHHHh
Q psy7212 33 VIGGFSQGGALALYSALT 50 (75)
Q Consensus 33 ~l~G~S~Gg~~a~~~a~~ 50 (75)
.+.|-|.||.+|..++..
T Consensus 46 liaGTStGgiiA~~la~~ 63 (349)
T cd07214 46 VIAGTSTGGLITAMLTAP 63 (349)
T ss_pred EEeeCCHHHHHHHHHhcC
Confidence 699999999999999874
No 298
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=53.71 E-value=22 Score=19.71 Aligned_cols=13 Identities=38% Similarity=0.330 Sum_probs=11.5
Q ss_pred eEEEEeChhHHHH
Q psy7212 32 IVIGGFSQGGALA 44 (75)
Q Consensus 32 ~~l~G~S~Gg~~a 44 (75)
..++|.|.|+.+.
T Consensus 70 ~vi~G~SAGA~i~ 82 (154)
T PF03575_consen 70 GVIIGTSAGAMIL 82 (154)
T ss_dssp SEEEEETHHHHCT
T ss_pred CEEEEEChHHhhc
Confidence 6899999999875
No 299
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=53.08 E-value=48 Score=20.80 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=18.6
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
...+++++|..-.|.++...+...
T Consensus 61 ~ggrI~~~GaGtSg~la~~da~e~ 84 (299)
T PRK05441 61 QGGRLIYIGAGTSGRLGVLDASEC 84 (299)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHhC
Confidence 446899999999999996555543
No 300
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=52.98 E-value=52 Score=20.27 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=19.7
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
+.++++++|....+.+|.++..+.
T Consensus 129 ~A~rI~~~G~g~S~~vA~~~~~~l 152 (281)
T COG1737 129 KARRIYFFGLGSSGLVASDLAYKL 152 (281)
T ss_pred cCCeEEEEEechhHHHHHHHHHHH
Confidence 456799999888888988887764
No 301
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=52.76 E-value=13 Score=23.37 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.7
Q ss_pred EEEEeChhHHHHHHHHH
Q psy7212 33 VIGGFSQGGALALYSAL 49 (75)
Q Consensus 33 ~l~G~S~Gg~~a~~~a~ 49 (75)
.+.|-|.||.+|+.++.
T Consensus 43 li~GTStGgiia~~l~~ 59 (329)
T cd07215 43 LVAGTSTGGILTCLYLC 59 (329)
T ss_pred eeeccCHHHHHHHHHhC
Confidence 69999999999987653
No 302
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=52.37 E-value=17 Score=17.58 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=13.9
Q ss_pred ceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy7212 31 RIVIGGFSQGGALALYSALTYPKKLAGVVALS 62 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~ 62 (75)
++.++| ||.+++.+|......=..+.++.
T Consensus 1 ~vvViG---gG~ig~E~A~~l~~~g~~vtli~ 29 (80)
T PF00070_consen 1 RVVVIG---GGFIGIELAEALAELGKEVTLIE 29 (80)
T ss_dssp EEEEES---SSHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEEEC---cCHHHHHHHHHHHHhCcEEEEEe
Confidence 356677 45555555544332223444444
No 303
>PF11181 YflT: Heat induced stress protein YflT
Probab=51.92 E-value=34 Score=17.74 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeChh
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGFSQG 40 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~G 40 (75)
.+.+...++.+...|+..+.|+++.|.--
T Consensus 9 ~~E~~~~I~~L~~~Gy~~ddI~Vva~d~~ 37 (103)
T PF11181_consen 9 EEEALSAIEELKAQGYSEDDIYVVAKDKD 37 (103)
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEEcCch
Confidence 45566777777788889899999998553
No 304
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=51.48 E-value=16 Score=25.96 Aligned_cols=18 Identities=39% Similarity=0.416 Sum_probs=16.0
Q ss_pred eEEEEeChhHHHHHHHHH
Q psy7212 32 IVIGGFSQGGALALYSAL 49 (75)
Q Consensus 32 ~~l~G~S~Gg~~a~~~a~ 49 (75)
=++.|.|.||.++..+|.
T Consensus 68 d~iaGTSAGAInaa~lA~ 85 (739)
T TIGR03607 68 DVISGTSAGGINGVLLAY 85 (739)
T ss_pred ceEEeeCHHHHHHHHHHc
Confidence 479999999999988886
No 305
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=51.18 E-value=60 Score=20.45 Aligned_cols=53 Identities=11% Similarity=-0.100 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCC
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 67 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~ 67 (75)
..+++..+++++... +..++-++.-|+.|-+|+..+.+- .+.-+|..-+..++
T Consensus 84 g~~sL~~V~dwl~~~--g~~~~GLIAaSLSaRIAy~Va~~i--~lsfLitaVGVVnl 136 (294)
T PF02273_consen 84 GKASLLTVIDWLATR--GIRRIGLIAASLSARIAYEVAADI--NLSFLITAVGVVNL 136 (294)
T ss_dssp HHHHHHHHHHHHHHT--T---EEEEEETTHHHHHHHHTTTS----SEEEEES--S-H
T ss_pred hHHHHHHHHHHHHhc--CCCcchhhhhhhhHHHHHHHhhcc--CcceEEEEeeeeeH
Confidence 456777777776543 456899999999999999999854 36777766655443
No 306
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=50.59 E-value=25 Score=22.36 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=18.6
Q ss_pred CCCCceEEEEeChhHHHHHHHHHh
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
+...+++|+|+|=|+.+.-.+...
T Consensus 190 ~~~~~~~LiGFSKGcvVLNqll~E 213 (303)
T PF10561_consen 190 ISKPPLTLIGFSKGCVVLNQLLYE 213 (303)
T ss_pred ccCCceEEEEecCcchHHHHHHHH
Confidence 345689999999999887666543
No 307
>PF13289 SIR2_2: SIR2-like domain
Probab=50.38 E-value=34 Score=18.14 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=12.1
Q ss_pred CCCCceEEEEeChhHH
Q psy7212 27 IPSDRIVIGGFSQGGA 42 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~ 42 (75)
+....+.++|+|+.=.
T Consensus 84 l~~~~~lfiGys~~D~ 99 (143)
T PF13289_consen 84 LRSKTLLFIGYSFNDP 99 (143)
T ss_pred HcCCCEEEEEECCCCH
Confidence 3456799999998754
No 308
>KOG0256|consensus
Probab=49.17 E-value=72 Score=21.54 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=36.2
Q ss_pred CcccHHHHHHHHHHHHH--HcCCCCCceEEEEeChhHHHHHHHHHhCCC
Q psy7212 7 QGPGIGKVKHRYFCEEV--SAGIPSDRIVIGGFSQGGALALYSALTYPK 53 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~ 53 (75)
-.....+.+.+++++.. +..++++++++.+.+.++.-++......|.
T Consensus 122 Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpg 170 (471)
T KOG0256|consen 122 GLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPG 170 (471)
T ss_pred CchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCC
Confidence 34456677888888776 334678899999999999988888887764
No 309
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=48.96 E-value=29 Score=20.63 Aligned_cols=15 Identities=27% Similarity=0.228 Sum_probs=11.7
Q ss_pred CCCceEEEEeChhHH
Q psy7212 28 PSDRIVIGGFSQGGA 42 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~ 42 (75)
+.+++.++||+=|=.
T Consensus 150 ~~~tVLIVGHnp~i~ 164 (201)
T PRK15416 150 PDKNIVIFTHNHCLT 164 (201)
T ss_pred CCCEEEEEeCchhHH
Confidence 447899999997753
No 310
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=47.76 E-value=64 Score=19.72 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=19.3
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~p 52 (75)
...+++++|..-.|.++..-+...+
T Consensus 48 ~ggrl~~~GaGtSg~la~~da~e~~ 72 (257)
T cd05007 48 AGGRLIYVGAGTSGRLGVLDASELP 72 (257)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHhcc
Confidence 3468999999999999976665543
No 311
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=47.59 E-value=32 Score=28.17 Aligned_cols=22 Identities=27% Similarity=0.105 Sum_probs=17.3
Q ss_pred CCCceEEEEeChhHHHHHHHHH
Q psy7212 28 PSDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
+..+-.++|||+|=+.|+..+.
T Consensus 672 Gi~Pd~v~GHSlGE~aAa~aAG 693 (2582)
T TIGR02813 672 GFKADMTAGHSFGELSALCAAG 693 (2582)
T ss_pred CCccceeecCCHHHHHHHHHhC
Confidence 4456789999999988877663
No 312
>PRK04148 hypothetical protein; Provisional
Probab=46.74 E-value=51 Score=18.32 Aligned_cols=22 Identities=18% Similarity=-0.052 Sum_probs=17.8
Q ss_pred CCceEEEEeChhHHHHHHHHHh
Q psy7212 29 SDRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
..++..+|-..|..+|..++..
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~ 38 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES 38 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC
Confidence 3679999999888888877754
No 313
>PRK15482 transcriptional regulator MurR; Provisional
Probab=46.72 E-value=67 Score=19.64 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=19.1
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
..++++++|....+.+|..+..+.
T Consensus 134 ~A~~I~i~G~G~S~~~A~~l~~~l 157 (285)
T PRK15482 134 KAPFIQITGLGGSALVGRDLSFKL 157 (285)
T ss_pred hCCeeEEEEeChhHHHHHHHHHHH
Confidence 456899999998888888777653
No 314
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=46.68 E-value=11 Score=23.60 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=18.4
Q ss_pred EEEEeChhHHHHHHHHHhCCCc
Q psy7212 33 VIGGFSQGGALALYSALTYPKK 54 (75)
Q Consensus 33 ~l~G~S~Gg~~a~~~a~~~p~~ 54 (75)
.++|.|+|+..+..|..+.+.+
T Consensus 43 ~~~GvSAGA~n~~aYls~Q~gr 64 (292)
T COG4667 43 LVVGVSAGALNLVAYLSKQRGR 64 (292)
T ss_pred eeeeecHhHHhHHHHhhcCCch
Confidence 5789999999999888876654
No 315
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=46.27 E-value=81 Score=20.47 Aligned_cols=51 Identities=10% Similarity=-0.051 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcc----cEEEEecccC
Q psy7212 15 KHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKL----AGVVALSCWL 65 (75)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~----~~~v~~~~~~ 65 (75)
+..+++.+.+.....+++.++|+++=-+..+..+.++...+ ...|+.++.+
T Consensus 177 ~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGw 231 (365)
T PF04443_consen 177 LEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGW 231 (365)
T ss_pred HHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCC
Confidence 44444444332235678999999995555455554443322 3455555544
No 316
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.10 E-value=64 Score=21.27 Aligned_cols=34 Identities=6% Similarity=0.054 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhC
Q psy7212 13 KVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
.|..++... +...++.++|....|.-+..++.+.
T Consensus 3 ~~~~~~~~~-----~~~~~i~v~G~G~sG~a~a~~L~~~ 36 (458)
T PRK01710 3 RDFNEFKKF-----IKNKKVAVVGIGVSNIPLIKFLVKL 36 (458)
T ss_pred chHHHHhhh-----hcCCeEEEEcccHHHHHHHHHHHHC
Confidence 345566655 4557899999999998666666543
No 317
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=45.14 E-value=58 Score=18.49 Aligned_cols=34 Identities=21% Similarity=-0.020 Sum_probs=18.0
Q ss_pred CCceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy7212 29 SDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 62 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~ 62 (75)
..++.+.|=|..|..-+.++...++.+..++=.+
T Consensus 68 gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~n 101 (160)
T PF08484_consen 68 GKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDN 101 (160)
T ss_dssp T--EEEE---SHHHHHHHHHT--TTTS--EEES-
T ss_pred CCEEEEECcchHHHHHHHHhCCCcceeEEEEeCC
Confidence 3679999999999888888776566566655444
No 318
>KOG2248|consensus
Probab=45.07 E-value=35 Score=22.39 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=21.3
Q ss_pred CCceEEEEeChhHHH-HHHHHHhCCCcccEEEEecc
Q psy7212 29 SDRIVIGGFSQGGAL-ALYSALTYPKKLAGVVALSC 63 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~-a~~~a~~~p~~~~~~v~~~~ 63 (75)
....+++|||+=.-+ ++.+ .||.-+...+++..
T Consensus 292 ~~~TILVGHSLenDL~aLKl--~H~~ViDTa~lf~~ 325 (380)
T KOG2248|consen 292 SKNTILVGHSLENDLKALKL--DHPSVIDTAVLFKH 325 (380)
T ss_pred CcCcEEEeechhhHHHHHhh--hCCceeeeeEEEec
Confidence 357899999998643 3333 46766666655543
No 319
>COG3621 Patatin [General function prediction only]
Probab=44.57 E-value=52 Score=21.55 Aligned_cols=20 Identities=55% Similarity=0.624 Sum_probs=16.5
Q ss_pred EEEEeChhHHHHHHHHHhCC
Q psy7212 33 VIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 33 ~l~G~S~Gg~~a~~~a~~~p 52 (75)
.+.|-|.||.+++.++.-.+
T Consensus 45 l~~GTSiGgilal~La~~ks 64 (394)
T COG3621 45 LIGGTSIGGILALGLALGKS 64 (394)
T ss_pred eecCccHHHHHHHHHhcCCC
Confidence 47799999999999887543
No 320
>PF14987 NADHdh_A3: NADH dehydrogenase 1 alpha subcomplex subunit 3
Probab=44.52 E-value=44 Score=16.99 Aligned_cols=19 Identities=16% Similarity=0.410 Sum_probs=15.6
Q ss_pred CCCCceEEEEeChhHHHHH
Q psy7212 27 IPSDRIVIGGFSQGGALAL 45 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~ 45 (75)
+..+++.++.+..||....
T Consensus 13 WaKEPVlvvSf~ig~lavi 31 (84)
T PF14987_consen 13 WAKEPVLVVSFVIGGLAVI 31 (84)
T ss_pred hhcCCeEEeeehhhhhhhh
Confidence 6778999999999996543
No 321
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=43.98 E-value=25 Score=20.67 Aligned_cols=17 Identities=24% Similarity=-0.009 Sum_probs=12.5
Q ss_pred CCCceEEEEeChhHHHH
Q psy7212 28 PSDRIVIGGFSQGGALA 44 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a 44 (75)
+.-..+++-||+||...
T Consensus 122 d~~~~~~i~~slgGGTG 138 (216)
T PF00091_consen 122 DSLDGFFIVHSLGGGTG 138 (216)
T ss_dssp TTESEEEEEEESSSSHH
T ss_pred cccccceecccccceec
Confidence 44567888899988754
No 322
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=42.57 E-value=58 Score=20.43 Aligned_cols=33 Identities=21% Similarity=0.093 Sum_probs=20.9
Q ss_pred ceEEEEeChhHHHHHHHHHhCCCcccEEEEecc
Q psy7212 31 RIVIGGFSQGGALALYSALTYPKKLAGVVALSC 63 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~ 63 (75)
+++++|=+.+|..+..-+.+....=..+++++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~ 33 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINP 33 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECC
Confidence 478999899987766655433222246666654
No 323
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=42.01 E-value=56 Score=19.65 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHHHHHHc-----CCCCCceEEEEeChhHH
Q psy7212 9 PGIGKVKHRYFCEEVSA-----GIPSDRIVIGGFSQGGA 42 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~S~Gg~ 42 (75)
-.+..-++..++++.+. .+..+++.++|.| ||.
T Consensus 103 ~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaS-gg~ 140 (219)
T TIGR02690 103 GAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVS-GGS 140 (219)
T ss_pred cCcCHHHHHHHHhcccCcccccccCCCcEEEEEeC-CcH
Confidence 34445566667665432 2455779999998 443
No 324
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=41.87 E-value=61 Score=18.92 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=12.8
Q ss_pred HHHHHHHHH-HcCCCCCceEEEEeChh
Q psy7212 15 KHRYFCEEV-SAGIPSDRIVIGGFSQG 40 (75)
Q Consensus 15 ~~~~~~~~~-~~~~~~~~~~l~G~S~G 40 (75)
+.+.++.++ ...++..+++++|-|-.
T Consensus 3 ~~~~~~El~~~a~l~~g~i~VvGcSTS 29 (172)
T PF04260_consen 3 LRQALEELLEQANLKPGQIFVVGCSTS 29 (172)
T ss_dssp HHHHHHHHHHHS---TT-EEEEEE-HH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeeeHH
Confidence 334444444 34466678999999864
No 325
>COG3675 Predicted lipase [Lipid metabolism]
Probab=41.58 E-value=26 Score=22.41 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=16.9
Q ss_pred CCC-CceEEEEeChhHHHHHHHHH
Q psy7212 27 IPS-DRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 27 ~~~-~~~~l~G~S~Gg~~a~~~a~ 49 (75)
++. -++.+.|||.|++++.-.+.
T Consensus 171 iP~~Yrig~tghS~g~aii~vrGt 194 (332)
T COG3675 171 IPQGYRIGITGHSSGGAIICVRGT 194 (332)
T ss_pred cccceEEEEEeecCCccEEEEecc
Confidence 444 56899999999988754443
No 326
>COG4475 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.12 E-value=73 Score=18.48 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHH-HcCCCCCceEEEEeChh
Q psy7212 11 IGKVKHRYFCEEV-SAGIPSDRIVIGGFSQG 40 (75)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~G 40 (75)
+.++...+++.+. +..++...++++|-|-.
T Consensus 4 l~k~~~~vl~d~~~~s~lk~g~lfvlG~StS 34 (180)
T COG4475 4 LKKDTRTVLDDVQDQSELKQGQLFVLGLSTS 34 (180)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEecchH
Confidence 5566777777666 45577788999999864
No 327
>PRK13937 phosphoheptose isomerase; Provisional
Probab=41.02 E-value=71 Score=18.36 Aligned_cols=36 Identities=17% Similarity=0.028 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHH
Q psy7212 13 KVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSA 48 (75)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a 48 (75)
+.+.+..+...+.=...++++++|..-.+.+|...+
T Consensus 22 ~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a 57 (188)
T PRK13937 22 EAIAKVAEALIEALANGGKILLCGNGGSAADAQHIA 57 (188)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHH
Confidence 444444444432213557899999988887666543
No 328
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=40.07 E-value=57 Score=21.31 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=21.9
Q ss_pred CceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy7212 30 DRIVIGGFSQGGALALYSALTYPKKLAGVVALS 62 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~ 62 (75)
.+++++|-+.||..+...+.+.... ..+++++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~-~~I~li~ 33 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKE-SDIIIFE 33 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCC-CCEEEEE
Confidence 3799999999998887777654322 2344444
No 329
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=39.87 E-value=70 Score=20.82 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=24.0
Q ss_pred CCceEEEEeChhHHHHHHHHHh-CCCcccEEEEe
Q psy7212 29 SDRIVIGGFSQGGALALYSALT-YPKKLAGVVAL 61 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~a~~~a~~-~p~~~~~~v~~ 61 (75)
..+++++|-|.||.-++..... .|..+..-|++
T Consensus 156 ~~~iV~IGaStGGp~AL~~il~~lP~~~p~pvvI 189 (350)
T COG2201 156 ARKIVAIGASTGGPAALRAVLPALPADFPAPVVI 189 (350)
T ss_pred CccEEEEEeCCCCHHHHHHHHHhCCCCCCCCEEE
Confidence 4568999999999999877654 67766633333
No 330
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=39.74 E-value=63 Score=19.98 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhH
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGG 41 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg 41 (75)
..+|+.-++........+.+-.++.|||+|-
T Consensus 46 vl~di~VFLNAhlaf~~~NrVaVva~~s~~~ 76 (296)
T COG5242 46 VLNDIVVFLNAHLAFSRNNRVAVVAGYSQGK 76 (296)
T ss_pred HHHHHHHHHHHHHhhccCCeEEEEEeccCce
Confidence 3456666666554444343346788999985
No 331
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=39.68 E-value=60 Score=17.36 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=14.5
Q ss_pred CCCCceEEEEeChhHHHH
Q psy7212 27 IPSDRIVIGGFSQGGALA 44 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a 44 (75)
++.+.++++||+--|.+.
T Consensus 56 l~v~~ivV~gHt~CG~v~ 73 (119)
T cd00382 56 LGVKHIIVCGHTDCGAVK 73 (119)
T ss_pred hCCCEEEEEccCCCcHHH
Confidence 577899999998777655
No 332
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=39.38 E-value=12 Score=21.63 Aligned_cols=33 Identities=9% Similarity=-0.198 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHh
Q psy7212 13 KVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
+.+.++++.... .-...+|-++|+..++.+..-
T Consensus 85 ~El~~i~dwa~~-----~v~stl~iCWgaqaal~~~yG 117 (175)
T cd03131 85 EELTEILDWAKT-----HVTSTLFSCWAAMAALYYFYG 117 (175)
T ss_pred HHHHHHHHHHHH-----hCcchHHHHHHHHHHHHHHcC
Confidence 347777776432 225677889999999888754
No 333
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=39.34 E-value=91 Score=20.61 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=16.5
Q ss_pred eEEEEeChhHHHHHHHHHh
Q psy7212 32 IVIGGFSQGGALALYSALT 50 (75)
Q Consensus 32 ~~l~G~S~Gg~~a~~~a~~ 50 (75)
-.++|-|.|+.++..++..
T Consensus 46 d~IaGtSAGALvAAl~asG 64 (382)
T cd07219 46 HRVAGTSAGSVIAALVVCG 64 (382)
T ss_pred CeEEEEcHHHHHHHHHHhC
Confidence 3689999999999988875
No 334
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. PAN catalyzes the deadenylation of poly(A) tails, which are initially synthesized to default lengths of 70 to 90, to mRNA-specific lengths of 55 to 71. Pab1p and PAN also play a role in the export and decay of mRNA. PAN2 contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain with three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
Probab=39.31 E-value=41 Score=19.60 Aligned_cols=13 Identities=8% Similarity=-0.020 Sum_probs=10.4
Q ss_pred CceEEEEeChhHH
Q psy7212 30 DRIVIGGFSQGGA 42 (75)
Q Consensus 30 ~~~~l~G~S~Gg~ 42 (75)
...+|+|||+-.=
T Consensus 101 ~~tILVGHsL~nD 113 (174)
T cd06143 101 LGCIFVGHGLAKD 113 (174)
T ss_pred CCCEEEeccchhH
Confidence 3579999999873
No 335
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=39.09 E-value=89 Score=18.91 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=16.4
Q ss_pred CCCceEEEEeChhHHHHHHHHH
Q psy7212 28 PSDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
+.++++++|....+.+|..+..
T Consensus 127 ~a~~I~i~G~G~S~~~a~~~~~ 148 (284)
T PRK11302 127 QAKKISFFGLGASAAVAHDAQN 148 (284)
T ss_pred cCCeEEEEEcchHHHHHHHHHH
Confidence 4568999999887777765543
No 336
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=38.94 E-value=16 Score=19.55 Aligned_cols=30 Identities=10% Similarity=0.224 Sum_probs=16.5
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCceEEEEeC
Q psy7212 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFS 38 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S 38 (75)
......+..+++.+.....+.+.+.+++|+
T Consensus 123 ~~~~~R~~~~~~~l~~~~~~~~~vliVsHg 152 (158)
T PF00300_consen 123 EDFQQRVKQFLDELIAYKRPGENVLIVSHG 152 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSEEEEEE-H
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEecH
Confidence 344455556666554311245678899885
No 337
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=38.38 E-value=66 Score=20.13 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=22.9
Q ss_pred CCceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy7212 29 SDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 62 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~ 62 (75)
.+++.++|-..||.+ +.+.+|+. +..++++.
T Consensus 77 pk~VLiiGgGdG~tl--Revlkh~~-ve~i~~VE 107 (282)
T COG0421 77 PKRVLIIGGGDGGTL--REVLKHLP-VERITMVE 107 (282)
T ss_pred CCeEEEECCCccHHH--HHHHhcCC-cceEEEEE
Confidence 358999999999965 67777765 66666654
No 338
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=37.05 E-value=34 Score=19.16 Aligned_cols=28 Identities=14% Similarity=0.031 Sum_probs=15.7
Q ss_pred HHHHHHHHHHH-HcCCCCCceEEEEeChh
Q psy7212 13 KVKHRYFCEEV-SAGIPSDRIVIGGFSQG 40 (75)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~~~~~l~G~S~G 40 (75)
.++.+.+.... +.+........+||+.|
T Consensus 129 ~ei~~~~~~~~~~~g~~~~~~~~~Gh~iG 157 (207)
T cd01066 129 EEVDAAAREVLEEHGLGPNFGHRTGHGIG 157 (207)
T ss_pred HHHHHHHHHHHHHcCccccCCCCCccccC
Confidence 34444444444 33332345678899999
No 339
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=36.96 E-value=70 Score=17.12 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=16.7
Q ss_pred CCCceEEEEeChhHHHHHHHHHh
Q psy7212 28 PSDRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
+.+++.++|....-.++...+.+
T Consensus 12 ~~~~i~~~G~G~s~~~a~e~~~k 34 (153)
T cd05009 12 EAKSFYVLGRGPNYGTALEGALK 34 (153)
T ss_pred ccCcEEEEcCCCCHHHHHHHHHH
Confidence 45789999987766677666654
No 340
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=36.64 E-value=72 Score=18.62 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=15.4
Q ss_pred HHHHHHHH-HcCCCCCceEEEEeChh
Q psy7212 16 HRYFCEEV-SAGIPSDRIVIGGFSQG 40 (75)
Q Consensus 16 ~~~~~~~~-~~~~~~~~~~l~G~S~G 40 (75)
..+++.+. ...++..+++++|-|-.
T Consensus 4 ~~~~~El~~~a~l~~g~i~VvGcSTS 29 (172)
T TIGR01440 4 TTVLEELKDASNLKKGDLFVIGCSTS 29 (172)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecchH
Confidence 33444443 34466778999998853
No 341
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=35.37 E-value=41 Score=22.71 Aligned_cols=21 Identities=24% Similarity=0.147 Sum_probs=18.0
Q ss_pred CceEEEEe------ChhHHHHHHHHHh
Q psy7212 30 DRIVIGGF------SQGGALALYSALT 50 (75)
Q Consensus 30 ~~~~l~G~------S~Gg~~a~~~a~~ 50 (75)
++++++|| |.|+.+++....+
T Consensus 3 ~~i~v~gh~~~d~d~i~sai~ya~l~~ 29 (546)
T PRK14869 3 KPIYVIGHKNPDTDSICSAIAYAELKN 29 (546)
T ss_pred CcEEEEcCCCCChHHHHHHHHHHHHHH
Confidence 57999999 8999998887765
No 342
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=35.30 E-value=63 Score=20.50 Aligned_cols=32 Identities=9% Similarity=-0.133 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHh
Q psy7212 14 VKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
.+.++++...+ ..+-++|-++|+.+++.+..-
T Consensus 123 El~~i~~w~~~-----~~~s~LgICwGaQa~a~algG 154 (302)
T PRK05368 123 ELKEILDWAKT-----HVTSTLFICWAAQAALYHLYG 154 (302)
T ss_pred HHHHHHHHHHH-----cCCCEEEEcHHHHHHHHHcCC
Confidence 36666665422 246788999999998876643
No 343
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=35.27 E-value=87 Score=17.71 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=18.1
Q ss_pred eEEEEeChhHHHHHHHHHhCCCcccEEEEecc
Q psy7212 32 IVIGGFSQGGALALYSALTYPKKLAGVVALSC 63 (75)
Q Consensus 32 ~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~ 63 (75)
|.++|..+|-.+ .|.++|. +++.++.++
T Consensus 63 IliCGtGiG~si---aANK~~G-IRAA~~~d~ 90 (148)
T PRK05571 63 ILICGTGIGMSI---AANKVKG-IRAALCHDT 90 (148)
T ss_pred EEEcCCcHHHHH---HHhcCCC-eEEEEECCH
Confidence 778887777655 4567775 666555543
No 344
>PF15566 Imm18: Immunity protein 18
Probab=35.22 E-value=37 Score=15.77 Aligned_cols=16 Identities=25% Similarity=0.169 Sum_probs=13.3
Q ss_pred CCCceEEEEeChhHHH
Q psy7212 28 PSDRIVIGGFSQGGAL 43 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~ 43 (75)
+.+.++++--||||.=
T Consensus 19 ~~~H~Hlmtp~WgG~E 34 (52)
T PF15566_consen 19 PFDHEHLMTPDWGGEE 34 (52)
T ss_pred CCCCceeccccccccc
Confidence 5678999999999953
No 345
>PF05005 Ocnus: Janus/Ocnus family (Ocnus); InterPro: IPR007702 This family is comprised of the Ocnus, Janus-A and Janus-B proteins. These proteins have been found to be testes specific in Drosophila melanogaster [].; PDB: 2OZX_A 2OZW_A 2NMM_C 2AI6_A 2HW4_A.
Probab=35.02 E-value=22 Score=19.02 Aligned_cols=12 Identities=42% Similarity=0.775 Sum_probs=9.2
Q ss_pred CCceEEEEeChh
Q psy7212 29 SDRIVIGGFSQG 40 (75)
Q Consensus 29 ~~~~~l~G~S~G 40 (75)
.+.+.+.|+|+|
T Consensus 75 ~k~I~VYGyS~~ 86 (108)
T PF05005_consen 75 KKKIKVYGYSQG 86 (108)
T ss_dssp TTEEEEES-BTT
T ss_pred CCEEEEEEeccc
Confidence 456999999998
No 346
>KOG2308|consensus
Probab=34.96 E-value=12 Score=26.62 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=18.5
Q ss_pred CceEEEEeChhHHHHHHHHHhC
Q psy7212 30 DRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
.+|.+.|||+|..+++......
T Consensus 417 G~Vsi~gHSLGSvit~Dil~~q 438 (741)
T KOG2308|consen 417 GKVSIAGHSLGSVITYDILSHQ 438 (741)
T ss_pred CceeeccCCCCceEEEeecccc
Confidence 5799999999999988777654
No 347
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=34.89 E-value=44 Score=19.84 Aligned_cols=29 Identities=21% Similarity=-0.033 Sum_probs=16.0
Q ss_pred HHHHHHHHHHH-HcCCCCCceEEEEeChhH
Q psy7212 13 KVKHRYFCEEV-SAGIPSDRIVIGGFSQGG 41 (75)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg 41 (75)
.++.+.++... +.++.....+-+||++|=
T Consensus 136 ~~v~~a~~~~~~~~G~~~~~~~~~GHgiGl 165 (228)
T cd01090 136 KDIAAELNEMYREHDLLRYRTFGYGHSFGV 165 (228)
T ss_pred HHHHHHHHHHHHHcCCCcccccccCccccc
Confidence 34444444444 344443345567999983
No 348
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=34.87 E-value=25 Score=19.77 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=15.1
Q ss_pred eChhHHHHHHHHHhCCC
Q psy7212 37 FSQGGALALYSALTYPK 53 (75)
Q Consensus 37 ~S~Gg~~a~~~a~~~p~ 53 (75)
..||+.+|..+-.++|+
T Consensus 29 g~mG~GIA~~~k~~~P~ 45 (154)
T PHA02595 29 HTMGSGIAGQLAKAFPQ 45 (154)
T ss_pred CcCChHHHHHHHHHcCh
Confidence 38999999999999984
No 349
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=34.80 E-value=88 Score=17.61 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=17.2
Q ss_pred eEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy7212 32 IVIGGFSQGGALALYSALTYPKKLAGVVALS 62 (75)
Q Consensus 32 ~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~ 62 (75)
|.++|..+|-.+ .|.++|. +++.++.+
T Consensus 60 IliCGtGiG~si---aANK~~G-Iraa~~~d 86 (144)
T TIGR00689 60 ILICGTGIGMSI---AANKFKG-IRAALCVD 86 (144)
T ss_pred EEEcCCcHHHHH---HHhcCCC-eEEEEECC
Confidence 777777777655 4567775 55555544
No 350
>PRK07877 hypothetical protein; Provisional
Probab=34.76 E-value=54 Score=23.44 Aligned_cols=35 Identities=23% Similarity=0.085 Sum_probs=25.7
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecc
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 63 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~ 63 (75)
+...++.++|-+.|+.++..++..- -+..+++++.
T Consensus 105 L~~~~V~IvG~GlGs~~a~~LaraG--vvG~l~lvD~ 139 (722)
T PRK07877 105 LGRLRIGVVGLSVGHAIAHTLAAEG--LCGELRLADF 139 (722)
T ss_pred HhcCCEEEEEecHHHHHHHHHHHcc--CCCeEEEEcC
Confidence 4567899999999988888777643 1366666664
No 351
>PHA00490 terminal protein
Probab=34.34 E-value=52 Score=19.96 Aligned_cols=42 Identities=24% Similarity=0.368 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccE
Q psy7212 14 VKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAG 57 (75)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~ 57 (75)
....+++..+.. ....+++-.|.|+| .+.-......|..|.+
T Consensus 100 eaQrvvde~~~~-~~Dke~isGGk~qG-Tvgqr~~llsp~~vtG 141 (266)
T PHA00490 100 EAQRVVDEILDR-FNDKEVISGGKSQG-TVGQRKELLSPPDVTG 141 (266)
T ss_pred HHHHHHHHHHHH-hcCcceeeCCCCCC-cHhhhhhhcCCcccCC
Confidence 344445443322 45577999999999 7777777777765554
No 352
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=34.11 E-value=38 Score=22.09 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=27.1
Q ss_pred CCceEEEEeChhHHHHHHHHHhCCCcccEEEE
Q psy7212 29 SDRIVIGGFSQGGALALYSALTYPKKLAGVVA 60 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~ 60 (75)
..+++++|.+.||.-.=..+.++|+.+.++.+
T Consensus 118 ~g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i 149 (392)
T PRK14046 118 SERVRVIASARGGMEIEEIAAKEPEAIIQVVV 149 (392)
T ss_pred CCcEEEEEeCCCCCchHHHhhhChhheEEEEc
Confidence 35788999999999999999999998877665
No 353
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=34.06 E-value=64 Score=22.31 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEE
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVV 59 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v 59 (75)
+-+.+....++....... ++-+++=|-+|.. ..+..|+|..++...
T Consensus 356 ~De~LL~~~~~~l~~~~~-~~~~IVLH~~GSH--p~Y~~Ryp~~~~kF~ 401 (555)
T COG2194 356 YDEALLPDLDQVLAQELS-QKKLIVLHLMGSH--PNYYDRYPKEFAKFT 401 (555)
T ss_pred chHHHhHhHHHHhhccCC-CCeEEEEEccCCC--ccHhhhCCHHHhccC
Confidence 344444444444332233 3445666999999 788899998766654
No 354
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=33.85 E-value=20 Score=18.09 Aligned_cols=10 Identities=40% Similarity=0.391 Sum_probs=7.3
Q ss_pred EEEEeChhHH
Q psy7212 33 VIGGFSQGGA 42 (75)
Q Consensus 33 ~l~G~S~Gg~ 42 (75)
+++|.|+|+.
T Consensus 56 ~IVG~~Fg~~ 65 (89)
T PF01221_consen 56 CIVGKSFGSS 65 (89)
T ss_dssp EEEESEEEEE
T ss_pred EEECCcEEEE
Confidence 4778888863
No 355
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=33.81 E-value=90 Score=17.42 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=15.8
Q ss_pred eEEEEeChhHHHHHHHHHhCCCcccEEEEecc
Q psy7212 32 IVIGGFSQGGALALYSALTYPKKLAGVVALSC 63 (75)
Q Consensus 32 ~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~ 63 (75)
|.++|..+|-.+ .|.++|. +++..+.++
T Consensus 61 IliCgtGiG~~i---aANK~~G-IrAa~~~d~ 88 (140)
T PF02502_consen 61 ILICGTGIGMSI---AANKVPG-IRAALCSDP 88 (140)
T ss_dssp EEEESSSHHHHH---HHHTSTT---EEE-SSH
T ss_pred EEEcCCChhhhh---HhhcCCC-EEEEeeCCH
Confidence 677777777654 4567775 555555443
No 356
>PRK02947 hypothetical protein; Provisional
Probab=33.31 E-value=79 Score=19.14 Aligned_cols=24 Identities=17% Similarity=-0.031 Sum_probs=18.3
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
...+|+++|....+.++..+..+.
T Consensus 39 ~a~~I~i~G~G~S~~vA~~~~~rl 62 (246)
T PRK02947 39 NGGLIYVFGTGHSHILAEEVFYRA 62 (246)
T ss_pred CCCEEEEEcCcHHHHHHHHhcccc
Confidence 446899999998888887765543
No 357
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=33.20 E-value=94 Score=17.47 Aligned_cols=38 Identities=18% Similarity=-0.007 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHh
Q psy7212 13 KVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
+.+.++++.+.+.-...++++++|-.-.+.++.+++.+
T Consensus 17 ~~i~~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~ 54 (177)
T cd05006 17 EAIEQAAQLLAEALLNGGKILICGNGGSAADAQHFAAE 54 (177)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHH
Confidence 34444444433211234689999999888887776653
No 358
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=33.08 E-value=86 Score=17.56 Aligned_cols=37 Identities=16% Similarity=0.003 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHHHcCCCCCceEEEEe-ChhHHHHHHHHHhCC
Q psy7212 10 GIGKVKHRYFCEEVSAGIPSDRIVIGGF-SQGGALALYSALTYP 52 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~-S~Gg~~a~~~a~~~p 52 (75)
.+.+.+.+++++ .+ ..++++|+ +.|.-++.+++.+..
T Consensus 70 ~~a~al~~~i~~-----~~-p~~Vl~~~t~~g~~la~rlAa~L~ 107 (168)
T cd01715 70 PYAPALVALAKK-----EK-PSHILAGATSFGKDLAPRVAAKLD 107 (168)
T ss_pred HHHHHHHHHHHh-----cC-CCEEEECCCccccchHHHHHHHhC
Confidence 344444455444 34 35666665 466688888887754
No 359
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=32.94 E-value=1.1e+02 Score=20.25 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=4.9
Q ss_pred HHHHHhCCCcc
Q psy7212 45 LYSALTYPKKL 55 (75)
Q Consensus 45 ~~~a~~~p~~~ 55 (75)
+....++|+++
T Consensus 18 L~vi~~~p~~f 28 (385)
T PRK05447 18 LDVIRRNPDRF 28 (385)
T ss_pred HHHHHhCcccc
Confidence 33344455544
No 360
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=32.68 E-value=47 Score=19.25 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=7.5
Q ss_pred EEeChhHHHHHHHH
Q psy7212 35 GGFSQGGALALYSA 48 (75)
Q Consensus 35 ~G~S~Gg~~a~~~a 48 (75)
+|+++++.++..++
T Consensus 59 mG~~lpaaiGa~la 72 (202)
T cd02006 59 LGWTVPAALGVAAA 72 (202)
T ss_pred hhhhhHHHHhHHhh
Confidence 45555555555554
No 361
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=32.52 E-value=56 Score=18.24 Aligned_cols=21 Identities=24% Similarity=0.110 Sum_probs=16.9
Q ss_pred ceEEEEeChhHHHHHHHHHhC
Q psy7212 31 RIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
+++++|-+.+|..+...+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~ 21 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP 21 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcC
Confidence 478999999998887777743
No 362
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=32.23 E-value=1e+02 Score=17.59 Aligned_cols=42 Identities=17% Similarity=0.102 Sum_probs=24.9
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCceEEEEeC--hhHHHHHHHHHh
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDRIVIGGFS--QGGALALYSALT 50 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S--~Gg~~a~~~a~~ 50 (75)
.+.....+.+++++. ...+..+++.++|.| .|--++..+..+
T Consensus 16 ~PcTp~aii~lL~~~-~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~ 59 (160)
T PF02882_consen 16 VPCTPLAIIELLEYY-GIDLEGKKVVVVGRSNIVGKPLAMLLLNK 59 (160)
T ss_dssp --HHHHHHHHHHHHT-T-STTT-EEEEE-TTTTTHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhc-CCCCCCCEEEEECCcCCCChHHHHHHHhC
Confidence 344556666677652 223566889999999 577777766665
No 363
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=31.92 E-value=94 Score=17.12 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=12.2
Q ss_pred CCCCceEEEEeChhHH
Q psy7212 27 IPSDRIVIGGFSQGGA 42 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~ 42 (75)
++.+.++++||+-=|.
T Consensus 53 l~~~~IiV~gHt~Cg~ 68 (142)
T cd03379 53 LGTREIIVIHHTDCGM 68 (142)
T ss_pred hCCCEEEEEeecCCcc
Confidence 5677899999985443
No 364
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=31.73 E-value=90 Score=18.94 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=16.0
Q ss_pred ceEEEEeChhHHHHHHHHHhCC
Q psy7212 31 RIVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a~~~p 52 (75)
+|+|+|-+.+|..+..+..++-
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G 24 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAG 24 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT
T ss_pred eEEEECCCHHHHHHHHHHHhcc
Confidence 5899999999988877777663
No 365
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=31.32 E-value=53 Score=19.33 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=17.2
Q ss_pred HHHHHHHHHHH-HcCCCCCceEEEEeChhHHH
Q psy7212 13 KVKHRYFCEEV-SAGIPSDRIVIGGFSQGGAL 43 (75)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~ 43 (75)
.++.+.++..+ +.+++. .....||++|-.+
T Consensus 135 ~~v~~~~~~~~~~~G~~~-~~~~~GHgiG~~~ 165 (238)
T cd01086 135 GDIGHAIEKYAEKNGYSV-VREFGGHGIGRKF 165 (238)
T ss_pred HHHHHHHHHHHHHcCcce-ecCccccCCCCcc
Confidence 44455554444 344432 2356899999865
No 366
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=31.31 E-value=42 Score=19.13 Aligned_cols=30 Identities=20% Similarity=0.087 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHH-HcCCCCCceEEEEeChhH
Q psy7212 12 GKVKHRYFCEEV-SAGIPSDRIVIGGFSQGG 41 (75)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg 41 (75)
..++.+.++... +.++.....+..||+.|-
T Consensus 129 ~~di~~~~~~~~~~~g~~~~~~~~~Gh~iG~ 159 (208)
T cd01092 129 AKEVDKAARDVIEEAGYGEYFIHRTGHGVGL 159 (208)
T ss_pred HHHHHHHHHHHHHHcCccccCCCCCccccCc
Confidence 344455554443 344432223468899884
No 367
>KOG1374|consensus
Probab=31.12 E-value=1.7e+02 Score=19.71 Aligned_cols=47 Identities=23% Similarity=0.113 Sum_probs=26.5
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeCh--------hHHHHHHHHHhCCCc
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQ--------GGALALYSALTYPKK 54 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~--------Gg~~a~~~a~~~p~~ 54 (75)
..+...+++-.+|+.+.... +.=.=+++-||+ |+.+.=++.-+||+.
T Consensus 110 ~G~~~~e~ImdiIdrEad~~-DsleGF~l~hSiAGGTGSGlGS~llErL~drypkk 164 (448)
T KOG1374|consen 110 QGERVQEDIMDIIDREADGS-DSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPKK 164 (448)
T ss_pred cchhhHHHHHHHHHHhhcCC-CcccceeEEEeecCCCCcchHHHHHHHHHHhchhh
Confidence 34567788888888765322 222235555765 444444555567754
No 368
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=31.03 E-value=91 Score=17.91 Aligned_cols=40 Identities=15% Similarity=0.049 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHH
Q psy7212 10 GIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
.+..-++..+|.+-+..+..+++.+++.|.|+.-+.....
T Consensus 81 s~pg~lKnaiD~l~~~~~~~Kpv~~~~~s~g~~~~~~a~~ 120 (184)
T COG0431 81 SYPGALKNAIDWLSREALGGKPVLLLGTSGGGAGGLRAQN 120 (184)
T ss_pred CCCHHHHHHHHhCCHhHhCCCcEEEEecCCCchhHHHHHH
Confidence 3444556666655444456678889988888876664443
No 369
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=30.94 E-value=1.1e+02 Score=19.34 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=17.3
Q ss_pred CceEEEEeChhHHHHHHHHHhC
Q psy7212 30 DRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
.+++++|-+++|..+.....+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~ 24 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ 24 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh
Confidence 4799999999998777666554
No 370
>KOG2968|consensus
Probab=30.85 E-value=54 Score=24.45 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=21.2
Q ss_pred HHHHHHcCCCCCceEEEEeChhHHHHHHHHHhC
Q psy7212 19 FCEEVSAGIPSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 19 ~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
++++...+++.+ .+.|-|+|+.++..||...
T Consensus 858 l~ALeE~GIPvD--~VGGTSIGafiGaLYA~e~ 888 (1158)
T KOG2968|consen 858 LQALEEAGIPVD--MVGGTSIGAFIGALYAEER 888 (1158)
T ss_pred HHHHHHcCCCee--eeccccHHHhhhhhhhccC
Confidence 333334455433 6789999999999888764
No 371
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=30.70 E-value=36 Score=19.04 Aligned_cols=15 Identities=20% Similarity=0.102 Sum_probs=8.0
Q ss_pred EEEeChhHHHHHHHH
Q psy7212 34 IGGFSQGGALALYSA 48 (75)
Q Consensus 34 l~G~S~Gg~~a~~~a 48 (75)
-+|+++++.++..++
T Consensus 43 smG~~lp~AiGa~~a 57 (157)
T cd02001 43 SMGLAGSIGLGLALG 57 (157)
T ss_pred chhhHHHHHHHHHhc
Confidence 445555555555554
No 372
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=30.69 E-value=28 Score=21.14 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=12.9
Q ss_pred eEEEEeChhHHHHHHH
Q psy7212 32 IVIGGFSQGGALALYS 47 (75)
Q Consensus 32 ~~l~G~S~Gg~~a~~~ 47 (75)
...+|+|.|+.++..-
T Consensus 119 ~~YiG~SAGA~ia~p~ 134 (224)
T COG3340 119 TPYIGWSAGANIAGPT 134 (224)
T ss_pred CceEEeccCceeecCc
Confidence 6788999999887543
No 373
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=30.65 E-value=2.2e+02 Score=20.97 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=18.2
Q ss_pred CCCceEEEEe------ChhHHHHHHHHHh
Q psy7212 28 PSDRIVIGGF------SQGGALALYSALT 50 (75)
Q Consensus 28 ~~~~~~l~G~------S~Gg~~a~~~a~~ 50 (75)
..++++++|| ++|+.+++....+
T Consensus 366 ~~d~ViI~gH~nPD~DAlGSalaL~~~lk 394 (838)
T PRK14538 366 KNPHCFIMGHNHTDLDSLGSMIAFYKIAL 394 (838)
T ss_pred cCCeEEEEecCCCCchHHHHHHHHHHHHH
Confidence 3468999998 6899998877553
No 374
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=30.58 E-value=97 Score=16.79 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=17.5
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
...+++++|-.-.+.++.+++.+.
T Consensus 34 ~gg~i~~~G~G~S~~~a~~~~~~~ 57 (138)
T PF13580_consen 34 NGGRIFVCGNGHSAAIASHFAADL 57 (138)
T ss_dssp TT--EEEEESTHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCchhhhHHHHHHHHH
Confidence 346899999888888888888764
No 375
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=30.38 E-value=1.4e+02 Score=19.84 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=10.7
Q ss_pred CceEEEEeChhHHHHHHH
Q psy7212 30 DRIVIGGFSQGGALALYS 47 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~ 47 (75)
+++-++|.+.|..+....
T Consensus 26 ~~f~v~~Laa~~n~~~L~ 43 (389)
T TIGR00243 26 DHFQVVALSAGKNVALMV 43 (389)
T ss_pred cccEEEEEEcCCCHHHHH
Confidence 456666666666554433
No 376
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=30.33 E-value=1e+02 Score=17.04 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=18.0
Q ss_pred CCCceEEEEeChhHHHHHHHHH
Q psy7212 28 PSDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
..++++++|..-.+.+|..++.
T Consensus 10 ~a~rI~~~G~G~S~~~A~~~a~ 31 (154)
T TIGR00441 10 AGGKVLICGNGGSACDAQHFAA 31 (154)
T ss_pred CCCEEEEEeCcHHHHHHHHHHH
Confidence 4578999999999998888753
No 377
>PRK05716 methionine aminopeptidase; Validated
Probab=30.31 E-value=50 Score=19.63 Aligned_cols=30 Identities=10% Similarity=-0.075 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHH-HcCCCCCceEEEEeChhHH
Q psy7212 12 GKVKHRYFCEEV-SAGIPSDRIVIGGFSQGGA 42 (75)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~ 42 (75)
..++.+.++... +.++.. ....+||++|-.
T Consensus 144 ~~dv~~~~~~~~~~~g~~~-~~~~~GHgiG~~ 174 (252)
T PRK05716 144 LGDIGHAIQKYAEAEGFSV-VREYCGHGIGRK 174 (252)
T ss_pred HHHHHHHHHHHHHHcCCee-ecCccccccCCc
Confidence 345555555544 344432 235689999975
No 378
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=29.91 E-value=1.2e+02 Score=17.56 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=16.4
Q ss_pred CCCCceEEEEeChhHHHHHHH
Q psy7212 27 IPSDRIVIGGFSQGGALALYS 47 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~ 47 (75)
++.+.++++|||-=|.+...+
T Consensus 78 L~v~~IvV~GHs~CGav~a~~ 98 (182)
T cd00883 78 LKVKHIIVCGHYGCGGVKAAL 98 (182)
T ss_pred cCCCEEEEecCCCchHHHHHH
Confidence 577789999999877765544
No 379
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=29.61 E-value=65 Score=18.76 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=15.4
Q ss_pred CceEEEEeChhHHHHHHH
Q psy7212 30 DRIVIGGFSQGGALALYS 47 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~ 47 (75)
+...++|.|.|+.+....
T Consensus 113 ~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 113 RGVVIGGTSAGAAVMGET 130 (210)
T ss_pred cCCeEEEcCHHHHHhhhc
Confidence 457999999999998875
No 380
>PLN02629 powdery mildew resistance 5
Probab=29.31 E-value=46 Score=21.92 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCCCCCceEEEEeChhHHHH
Q psy7212 16 HRYFCEEVSAGIPSDRIVIGGFSQGGALA 44 (75)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a 44 (75)
.++++. ...+++.++|-|++=..-
T Consensus 112 ~~fLe~-----~RgKrl~FVGDSL~RNQ~ 135 (387)
T PLN02629 112 LEFLLK-----MKGKTVMFVGDSLGRNQW 135 (387)
T ss_pred HHHHHH-----hcCCeEEEeccccchhHH
Confidence 355655 566899999999997544
No 381
>KOG2794|consensus
Probab=29.24 E-value=82 Score=20.08 Aligned_cols=33 Identities=9% Similarity=0.047 Sum_probs=23.8
Q ss_pred CcCCCCcccHHHHHHHHHHHHHHcCCCCCceEEEEeCh
Q psy7212 2 VCAHEQGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQ 39 (75)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~ 39 (75)
+++.+-.++.+.++.+-+.. .+..++.++.+|.
T Consensus 175 VapSDmmDgRV~aIk~aL~~-----~~l~~vsvmSYsa 207 (340)
T KOG2794|consen 175 VAPSDMMDGRVGAIKQALDA-----EGLQKVSVMSYSA 207 (340)
T ss_pred ecchHhhcchHHHHHHHHHH-----hcccceEEEeehh
Confidence 56667777888888877766 3555888887763
No 382
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=29.05 E-value=1e+02 Score=16.86 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=26.4
Q ss_pred cCCCCcccHHHHHHHHHHHHH-HcCCCCCceEEEEeCh
Q psy7212 3 CAHEQGPGIGKVKHRYFCEEV-SAGIPSDRIVIGGFSQ 39 (75)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~ 39 (75)
+..++.+.+.+...++++.+. +.+++.+.++-+=+|.
T Consensus 10 v~~nt~e~I~~at~eLl~~i~~~N~l~~edivSv~FT~ 47 (117)
T cd02185 10 VEENTAEEILEATRELLEEIIERNNIKPEDIISVIFTV 47 (117)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEe
Confidence 455677778888888888877 6677777776555553
No 383
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=28.99 E-value=86 Score=17.95 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=9.5
Q ss_pred CCCCceEEEEeC
Q psy7212 27 IPSDRIVIGGFS 38 (75)
Q Consensus 27 ~~~~~~~l~G~S 38 (75)
.+..+|.|.||.
T Consensus 112 ~p~~~i~V~GHT 123 (190)
T COG2885 112 NPITRILVEGHT 123 (190)
T ss_pred CCCcEEEEEecC
Confidence 356789999994
No 384
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=28.90 E-value=95 Score=19.34 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=18.0
Q ss_pred CceEEEEeChhHHHHHHHHHhC
Q psy7212 30 DRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
++++++|....+.+|.+++.+.
T Consensus 48 ~~I~i~G~G~S~~~a~~~~~~l 69 (326)
T PRK10892 48 GKVVVMGMGKSGHIGRKMAATF 69 (326)
T ss_pred CeEEEEeCcHhHHHHHHHHHHH
Confidence 5899999998888887777654
No 385
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=28.89 E-value=93 Score=16.07 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=19.7
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
+.++++++|......+|..++.+.
T Consensus 4 ~~~~i~i~G~G~s~~~A~~~~~~l 27 (131)
T PF01380_consen 4 KAKRIYIYGSGSSYGVAQYAALKL 27 (131)
T ss_dssp TSSEEEEEESTHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcchHHHHHHHHHHHH
Confidence 457899999999999888877654
No 386
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=28.72 E-value=1.1e+02 Score=16.95 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=29.5
Q ss_pred cCCCCcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHH
Q psy7212 3 CAHEQGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
|...-.+...+.+.++++.. ...+..+++.++|.|.--.-.+....
T Consensus 3 ~~~~~~p~t~~a~~~ll~~~-~~~~~gk~v~VvGrs~~vG~pla~lL 48 (140)
T cd05212 3 CTPLFVSPVAKAVKELLNKE-GVRLDGKKVLVVGRSGIVGAPLQCLL 48 (140)
T ss_pred CCCcccccHHHHHHHHHHHc-CCCCCCCEEEEECCCchHHHHHHHHH
Confidence 44445566677777777653 22356688999999976655544443
No 387
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=28.70 E-value=90 Score=15.81 Aligned_cols=41 Identities=17% Similarity=0.077 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHc-C-CCCCceEEEEeChhHHHHHHHHHhCC
Q psy7212 12 GKVKHRYFCEEVSA-G-IPSDRIVIGGFSQGGALALYSALTYP 52 (75)
Q Consensus 12 ~~~~~~~~~~~~~~-~-~~~~~~~l~G~S~Gg~~a~~~a~~~p 52 (75)
.+.+.+.++..... . -..+++.++|-|-|=.+|.+.+..+.
T Consensus 20 ~~~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg 62 (78)
T PF12242_consen 20 ARNVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFG 62 (78)
T ss_dssp HHHHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhc
Confidence 34455555554422 1 23478999999999999988877653
No 388
>PF12165 DUF3594: Domain of unknown function (DUF3594); InterPro: IPR021998 This presumed domain is functionally uncharacterised.This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00628 from PFAM.
Probab=28.56 E-value=75 Score=17.73 Aligned_cols=29 Identities=7% Similarity=0.225 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhHH
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGA 42 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~ 42 (75)
++.|+.++.++ -.-+.++..+.||+-|..
T Consensus 21 LT~dve~Fy~~---CDP~kenLCLYG~p~~~W 49 (137)
T PF12165_consen 21 LTTDVEEFYQQ---CDPEKENLCLYGHPDGTW 49 (137)
T ss_pred HHHHHHHHHHh---cCccccceEEecCCCCCe
Confidence 34455555543 112346799999999864
No 389
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=28.37 E-value=1.1e+02 Score=16.80 Aligned_cols=49 Identities=12% Similarity=0.052 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccCCC
Q psy7212 14 VKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 67 (75)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~~~ 67 (75)
++.++++. .+.++++++|-+....+.......+...++-.|..+.....
T Consensus 89 ~l~~~L~~-----~gi~~viv~G~~td~CV~~Ta~~a~~~g~~v~vi~Da~~s~ 137 (155)
T cd01014 89 DLEEWLRE-----AGIDHLVICGAMTEMCVDTTVRSAFDLGYDVTVVADACATF 137 (155)
T ss_pred CHHHHHHH-----CCCCEEEEEeeccchhHHHHHHHHHHCCCcEEEecccccCC
Confidence 45555554 46679999999987766544443333346666666554433
No 390
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=28.25 E-value=99 Score=17.46 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEe-ChhHHHHHHHHHhCC
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGF-SQGGALALYSALTYP 52 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~-S~Gg~~a~~~a~~~p 52 (75)
+++-+.++++. .+ ..++++|+ +.|+.++.++|.+..
T Consensus 79 ~a~~l~~~i~~-----~~-p~~Vl~g~t~~g~~la~rlA~~L~ 115 (181)
T cd01985 79 TAKALAALIKK-----EK-PDLILAGATSIGKQLAPRVAALLG 115 (181)
T ss_pred HHHHHHHHHHH-----hC-CCEEEECCcccccCHHHHHHHHhC
Confidence 34444444444 23 35666665 567788888887753
No 391
>PRK06163 hypothetical protein; Provisional
Probab=28.25 E-value=86 Score=18.48 Aligned_cols=14 Identities=29% Similarity=0.105 Sum_probs=6.9
Q ss_pred EEeChhHHHHHHHH
Q psy7212 35 GGFSQGGALALYSA 48 (75)
Q Consensus 35 ~G~S~Gg~~a~~~a 48 (75)
+|+++++.++..++
T Consensus 59 MG~glpaAiGaalA 72 (202)
T PRK06163 59 MGLAFPIALGVALA 72 (202)
T ss_pred cccHHHHHHHHHHh
Confidence 44444455555444
No 392
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=27.83 E-value=1.1e+02 Score=16.73 Aligned_cols=37 Identities=11% Similarity=0.216 Sum_probs=26.3
Q ss_pred cCCCCcccHHHHHHHHHHHHH-HcCCCCCceEEEEeCh
Q psy7212 3 CAHEQGPGIGKVKHRYFCEEV-SAGIPSDRIVIGGFSQ 39 (75)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~ 39 (75)
+..++.+.+.+...++++.+. +.+++.+.++-+=+|.
T Consensus 10 v~~nt~e~I~~at~eLl~~ii~~N~l~~edivSv~FT~ 47 (117)
T TIGR01796 10 VERNEAEEIGEAVAELLTELMERNELTPEDLISVIFTV 47 (117)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEe
Confidence 455667778888888888877 6677777776655653
No 393
>PRK07281 methionine aminopeptidase; Reviewed
Probab=27.53 E-value=96 Score=19.36 Aligned_cols=28 Identities=18% Similarity=-0.035 Sum_probs=15.5
Q ss_pred HHHHHHHHHHH-HcCCCCCceEEEEeChhH
Q psy7212 13 KVKHRYFCEEV-SAGIPSDRIVIGGFSQGG 41 (75)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg 41 (75)
.++.+.++... +.++.. -....||+.|=
T Consensus 175 ~di~~a~~~~~~~~G~~~-~~~~~GHGIGl 203 (286)
T PRK07281 175 GDIGAAIQEYAESRGYGV-VRDLVGHGVGP 203 (286)
T ss_pred HHHHHHHHHHHHHcCCcc-CCCeeeeeCCC
Confidence 34444444444 344432 23679999993
No 394
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=27.22 E-value=1.2e+02 Score=16.98 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=19.5
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecccC
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
.+.++|++..-+..+...+..+...|. +.+++-+|..
T Consensus 115 ~~pd~Ivvt~Ga~~al~~l~~~l~dpG--D~VlVp~P~Y 151 (153)
T PLN02994 115 FDADMIVLSAGATAANEIIMFCIADPG--DAFLVPTPYY 151 (153)
T ss_pred cchhheEEcCCHHHHHHHHHHHHcCCC--CEEEEeCCCC
Confidence 455667666545555444444444554 4555555443
No 395
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=27.11 E-value=1.3e+02 Score=18.33 Aligned_cols=18 Identities=22% Similarity=0.146 Sum_probs=14.2
Q ss_pred ceEEEEeChhHHHHHHHH
Q psy7212 31 RIVIGGFSQGGALALYSA 48 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a 48 (75)
...++|.|.|+.++....
T Consensus 113 G~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 113 GTPYIGWSAGANVAGPTI 130 (233)
T ss_pred CCEEEEECHHHHhhhccc
Confidence 378999999998865544
No 396
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=26.80 E-value=1.6e+02 Score=18.03 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=18.3
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
..+++.++|....+.+|.++..+.
T Consensus 139 ~A~~I~i~G~G~S~~~A~~l~~~l 162 (292)
T PRK11337 139 QARQRDLYGAGGSAAIARDVQHKF 162 (292)
T ss_pred cCCeEEEEEecHHHHHHHHHHHHH
Confidence 456799999988888887776543
No 397
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=26.78 E-value=1.3e+02 Score=17.16 Aligned_cols=41 Identities=15% Similarity=0.026 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCceEEEEeC-hhHHHHHHHHHh
Q psy7212 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFS-QGGALALYSALT 50 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S-~Gg~~a~~~a~~ 50 (75)
+.....+.++++... ..+...++.++|-+ +.|..+..++.+
T Consensus 25 p~~~~a~v~l~~~~~-~~l~gk~vlViG~G~~~G~~~a~~L~~ 66 (168)
T cd01080 25 PCTPAGILELLKRYG-IDLAGKKVVVVGRSNIVGKPLAALLLN 66 (168)
T ss_pred CChHHHHHHHHHHcC-CCCCCCEEEEECCcHHHHHHHHHHHhh
Confidence 445555566665532 23566889999998 556644444443
No 398
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=26.75 E-value=1.4e+02 Score=17.67 Aligned_cols=28 Identities=36% Similarity=0.512 Sum_probs=18.6
Q ss_pred ceEEEEeChhHHHHHHHHHhCCCcc---cEEEE
Q psy7212 31 RIVIGGFSQGGALALYSALTYPKKL---AGVVA 60 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a~~~p~~~---~~~v~ 60 (75)
-+++.| |||.+......+.++.. ..+|+
T Consensus 69 ~ivIAG--MGG~lI~~ILe~~~~~~~~~~~lIL 99 (205)
T PF04816_consen 69 TIVIAG--MGGELIIEILEAGPEKLSSAKRLIL 99 (205)
T ss_dssp EEEEEE--E-HHHHHHHHHHTGGGGTT--EEEE
T ss_pred EEEEec--CCHHHHHHHHHhhHHHhccCCeEEE
Confidence 456665 99999999998887643 44554
No 399
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=26.44 E-value=69 Score=18.82 Aligned_cols=17 Identities=29% Similarity=0.299 Sum_probs=14.4
Q ss_pred ceEEEEeChhHHHHHHH
Q psy7212 31 RIVIGGFSQGGALALYS 47 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~ 47 (75)
...++|.|.|+.+....
T Consensus 114 g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 114 GVVYIGWSAGSNCWFPS 130 (212)
T ss_pred CCEEEEECHhHHhhCCC
Confidence 47899999999988763
No 400
>PF07812 TfuA: TfuA-like protein; InterPro: IPR012924 This domain consists of a group of sequences that are similar to the core of TfuA protein (Q52872 from SWISSPROT). This protein is involved in the production of trifolitoxin (TFX), a gene-encoded, post-translationally modified peptide antibiotic []. The role of TfuA in TFX synthesis is unknown, and it may be involved in other cellular processes [].
Probab=26.43 E-value=1.2e+02 Score=16.64 Aligned_cols=19 Identities=32% Similarity=0.102 Sum_probs=14.4
Q ss_pred ceEEEEeChhHHHHHHHHH
Q psy7212 31 RIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a~ 49 (75)
-.++.+-|||+.=|..+..
T Consensus 23 v~V~GasSMGALRAaEl~~ 41 (120)
T PF07812_consen 23 VRVFGASSMGALRAAELAP 41 (120)
T ss_pred CEEEecccHHHHHHHHhHh
Confidence 3577789999987777663
No 401
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=26.31 E-value=1.3e+02 Score=17.05 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=18.0
Q ss_pred ceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy7212 31 RIVIGGFSQGGALALYSALTYPKKLAGVVALS 62 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~ 62 (75)
-|.++|..+|-.+ .|.++|. +++.++.+
T Consensus 65 GIliCGtGiG~si---aANK~~G-IRAa~~~d 92 (151)
T PTZ00215 65 GILVCGSGIGISI---AANKVKG-IRCALCHD 92 (151)
T ss_pred EEEEcCCcHHHHH---HHhcCCC-eEEEEECC
Confidence 3778888777655 4566764 56555554
No 402
>PRK06193 hypothetical protein; Provisional
Probab=26.19 E-value=1.2e+02 Score=18.16 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEEeCh
Q psy7212 12 GKVKHRYFCEEVSAGIPSDRIVIGGFSQ 39 (75)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~G~S~ 39 (75)
.+++.++++.+ .-+.+++.++||..
T Consensus 141 ~~~l~~~I~~l---~~~~~~vLlVgHnp 165 (206)
T PRK06193 141 KAGLRPLLTTP---PDPGTNTVLVGHDD 165 (206)
T ss_pred HHHHHHHHhhC---CCCCCeEEEEeCch
Confidence 44555555442 12346799999995
No 403
>KOG3553|consensus
Probab=26.15 E-value=33 Score=18.41 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=14.9
Q ss_pred CCceEEEEeChhHHHHHHHH
Q psy7212 29 SDRIVIGGFSQGGALALYSA 48 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~a~~~a 48 (75)
......+|++.||.+--...
T Consensus 31 Gre~l~~GFkIGGGIDQDp~ 50 (124)
T KOG3553|consen 31 GRENLILGFKIGGGIDQDPS 50 (124)
T ss_pred CcEEEEEEEEeccccCCCcc
Confidence 34688999999998754443
No 404
>COG3952 Predicted membrane protein [Function unknown]
Probab=26.05 E-value=60 Score=17.48 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHhCCCcc
Q psy7212 39 QGGALALYSALTYPKKL 55 (75)
Q Consensus 39 ~Gg~~a~~~a~~~p~~~ 55 (75)
+||.+++.|+.+..|.|
T Consensus 66 lGg~l~L~Yfi~~~DpV 82 (113)
T COG3952 66 LGGLLLLSYFIRRQDPV 82 (113)
T ss_pred HhhHHHHHHHHHhcchH
Confidence 68889999988876654
No 405
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.91 E-value=1.8e+02 Score=18.41 Aligned_cols=42 Identities=24% Similarity=0.137 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCceEEEEeCh--hHHHHHHHHHh
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQ--GGALALYSALT 50 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~--Gg~~a~~~a~~ 50 (75)
.+.....+.++++.. ...+...++.++|.|. |--++..+..+
T Consensus 144 ~PcTp~av~~ll~~~-~i~l~Gk~vvViGrs~iVGkPla~lL~~~ 187 (287)
T PRK14176 144 VPCTPHGVIRALEEY-GVDIEGKNAVIVGHSNVVGKPMAAMLLNR 187 (287)
T ss_pred CCCcHHHHHHHHHHc-CCCCCCCEEEEECCCcccHHHHHHHHHHC
Confidence 345566666777652 2234568899999997 77777766654
No 406
>KOG3430|consensus
Probab=25.89 E-value=1.1e+02 Score=15.92 Aligned_cols=34 Identities=18% Similarity=0.111 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHH
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALA 44 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a 44 (75)
..+++...+........+..=-.++|-++|+.++
T Consensus 35 ~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vT 68 (90)
T KOG3430|consen 35 IEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVT 68 (90)
T ss_pred ChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEE
Confidence 3456666776665333333335788999998654
No 407
>PRK11789 N-acetyl-anhydromuranmyl-L-alanine amidase; Provisional
Probab=25.72 E-value=92 Score=18.28 Aligned_cols=29 Identities=14% Similarity=-0.127 Sum_probs=18.1
Q ss_pred ccHHHHHHHHHHHHH-HcCCCCCceEEEEeCh
Q psy7212 9 PGIGKVKHRYFCEEV-SAGIPSDRIVIGGFSQ 39 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~ 39 (75)
+.+.+.+..++..+. ++++. +-.++||+-
T Consensus 129 ~aQ~~aL~~L~~~L~~~y~i~--~~~IvGH~d 158 (185)
T PRK11789 129 DAQYQALAALTRALRAAYPII--AERITGHSD 158 (185)
T ss_pred HHHHHHHHHHHHHHHHHcCCC--HHhEEehhh
Confidence 444556667776665 44432 567899975
No 408
>PLN03006 carbonate dehydratase
Probab=25.72 E-value=1.4e+02 Score=19.11 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=16.1
Q ss_pred CCCCceEEEEeChhHHHHHHH
Q psy7212 27 IPSDRIVIGGFSQGGALALYS 47 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~ 47 (75)
++.+.|+++|||-=|.+...+
T Consensus 169 L~V~~IVV~GHs~CGaV~Aal 189 (301)
T PLN03006 169 LNVENILVIGHSRCGGIQALM 189 (301)
T ss_pred hCCCEEEEecCCCchHHHHHh
Confidence 677899999999877665433
No 409
>PRK09273 hypothetical protein; Provisional
Probab=25.65 E-value=1.6e+02 Score=17.81 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=15.9
Q ss_pred eEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy7212 32 IVIGGFSQGGALALYSALTYPKKLAGVVALS 62 (75)
Q Consensus 32 ~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~ 62 (75)
|.++|..+|..+ .+.++|. +++..+.+
T Consensus 68 IliCGTGiG~si---AANK~pG-Iraalc~d 94 (211)
T PRK09273 68 VTGCGTGQGAML---ALNSFPG-VVCGYCID 94 (211)
T ss_pred EEEcCcHHHHHH---HHhcCCC-eEEEEeCC
Confidence 566666666644 4567775 55555544
No 410
>PLN03019 carbonic anhydrase
Probab=25.34 E-value=1.9e+02 Score=18.84 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=15.9
Q ss_pred CCCCceEEEEeChhHHHHHHH
Q psy7212 27 IPSDRIVIGGFSQGGALALYS 47 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~ 47 (75)
++.+.|+++|||-=|.+...+
T Consensus 212 L~V~~IVV~GHs~CGaVkAal 232 (330)
T PLN03019 212 LKVENIVVIGHSACGGIKGLM 232 (330)
T ss_pred hCCCEEEEecCCCchHHHHHH
Confidence 577899999999866555443
No 411
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=25.20 E-value=1.5e+02 Score=17.35 Aligned_cols=33 Identities=15% Similarity=-0.053 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHh
Q psy7212 13 KVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
.|..+.++. +..++++++|-|..=.+-..++..
T Consensus 4 ~d~~~cL~~-----lr~k~i~fiGDS~~Rq~~~~l~~~ 36 (263)
T PF13839_consen 4 FDARECLQR-----LRNKRIVFIGDSTTRQQYESLVCL 36 (263)
T ss_pred hhHHHHHHH-----ccCCEEEEEechhhHHHHHHHHHH
Confidence 355566665 446789999999998777666654
No 412
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=25.15 E-value=1.1e+02 Score=19.67 Aligned_cols=33 Identities=15% Similarity=0.085 Sum_probs=25.1
Q ss_pred CCcCCCCcccHHHHHHHHHHHHHHcCCCCCceEEEEeC
Q psy7212 1 MVCAHEQGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFS 38 (75)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S 38 (75)
+++|.+-.++.+..+.+.++. -+..++-++.+|
T Consensus 153 iVAPSdMMDGrV~aIR~aLd~-----~g~~~v~ImsYs 185 (314)
T cd00384 153 IVAPSDMMDGRVAAIREALDE-----AGFSDVPIMSYS 185 (314)
T ss_pred eeecccccccHHHHHHHHHHH-----CCCCCCceeecH
Confidence 466778888889999988887 455678888655
No 413
>PTZ00387 epsilon tubulin; Provisional
Probab=25.11 E-value=1.1e+02 Score=20.67 Aligned_cols=18 Identities=22% Similarity=0.017 Sum_probs=10.3
Q ss_pred EEEEeChhHH----HHHHHHHh
Q psy7212 33 VIGGFSQGGA----LALYSALT 50 (75)
Q Consensus 33 ~l~G~S~Gg~----~a~~~a~~ 50 (75)
+++=||+||. ++..++.+
T Consensus 134 f~i~~slgGGTGSGlgs~lle~ 155 (465)
T PTZ00387 134 FFLMHSLGGGTGSGLGTRILGM 155 (465)
T ss_pred EEEEeecCCCcchhHHHHHHHH
Confidence 4556888864 34444443
No 414
>COG4425 Predicted membrane protein [Function unknown]
Probab=24.85 E-value=1.3e+02 Score=20.85 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=21.8
Q ss_pred CCceEEEEeChhHHHHHH-HHHhCC--CcccEEEEecccC
Q psy7212 29 SDRIVIGGFSQGGALALY-SALTYP--KKLAGVVALSCWL 65 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~a~~-~a~~~p--~~~~~~v~~~~~~ 65 (75)
..|.++.|.|+|++-.-. ....+. ..+++....++++
T Consensus 396 RPKLylhG~SLGa~~s~~~s~dl~dvl~dfdGaLwSGppf 435 (588)
T COG4425 396 RPKLYLHGESLGAMGSEAPSMDLFDVLGDFDGALWSGPPF 435 (588)
T ss_pred CCceEEeccccccccCccccccHHHHHhhcccceecCCCC
Confidence 357999999999976543 111111 1256665555544
No 415
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=24.82 E-value=88 Score=18.06 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=10.2
Q ss_pred EEEEeChhHHHHHHHH
Q psy7212 33 VIGGFSQGGALALYSA 48 (75)
Q Consensus 33 ~l~G~S~Gg~~a~~~a 48 (75)
.-+|+++++.++..++
T Consensus 53 g~mG~~lpaaiGa~la 68 (196)
T cd02013 53 GNCGYALPAIIGAKAA 68 (196)
T ss_pred cccccHHHHHHHHHHh
Confidence 3456677777776665
No 416
>KOG4231|consensus
Probab=24.79 E-value=37 Score=23.65 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=16.1
Q ss_pred EEEEeChhHHHHHHHHHhC
Q psy7212 33 VIGGFSQGGALALYSALTY 51 (75)
Q Consensus 33 ~l~G~S~Gg~~a~~~a~~~ 51 (75)
.++|.|.||.+|..+...+
T Consensus 453 ~ICGvSTG~ilA~~Lg~k~ 471 (763)
T KOG4231|consen 453 LICGVSTGGILAIALGVKL 471 (763)
T ss_pred HHhccCchHHHHHHHHhcC
Confidence 4899999999999887653
No 417
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=24.66 E-value=1.1e+02 Score=21.44 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=23.0
Q ss_pred cCCCCcccHHHHHHHHHHHHHHcCCCCCceEEEEeCh
Q psy7212 3 CAHEQGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQ 39 (75)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~ 39 (75)
|...+...+.+|+.+++.- ++.+++.++-|--
T Consensus 167 vrq~teaEIEeDmmeIVqL-----LGk~rVvfVTHVN 198 (831)
T PRK15180 167 VEQMDEHAIEQDMMEIVQL-----LGRDRVMFMTHVD 198 (831)
T ss_pred hhcccHHHHHHHHHHHHHH-----hCCCcEEEEEeec
Confidence 3444556677788888876 6778999998864
No 418
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=24.56 E-value=1.6e+02 Score=17.27 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=16.7
Q ss_pred CCCCceEEEEeChhHHHHHHHH
Q psy7212 27 IPSDRIVIGGFSQGGALALYSA 48 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a 48 (75)
++.+.++++|||-=|.+...+.
T Consensus 84 l~v~~ivV~GH~~Cgav~Aa~~ 105 (190)
T cd00884 84 LKVEHIVVCGHSDCGGIRALLS 105 (190)
T ss_pred hCCCEEEEeCCCcchHHHHHhc
Confidence 5777899999998776655443
No 419
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=24.47 E-value=1.3e+02 Score=18.00 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=20.9
Q ss_pred CcccHHHHHHHHHHHHHHcCCC-CCceEEEEeChhHHHH
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIP-SDRIVIGGFSQGGALA 44 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~G~S~Gg~~a 44 (75)
+.+.+.+.+.+.+...++..+. ..+..++|.|+|....
T Consensus 8 ~~~~l~~~aa~~l~~~l~~~~~~~~~~~~iglsgG~T~~ 46 (261)
T PRK00443 8 TAEEVGKWAARHIANRINAFLPTKERPFVLGLATGSSPL 46 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCCCHH
Confidence 3444555555555444422222 2346789999996543
No 420
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=24.46 E-value=1.2e+02 Score=15.70 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=13.7
Q ss_pred CceEEEEeChhHHHHHHHHHh
Q psy7212 30 DRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
+++.++|......++..++..
T Consensus 14 ~~i~i~g~g~s~~~a~~~~~~ 34 (139)
T cd05013 14 RRIYIFGVGSSGLVAEYLAYK 34 (139)
T ss_pred CEEEEEEcCchHHHHHHHHHH
Confidence 578888877666666555443
No 421
>PRK14576 putative endopeptidase; Provisional
Probab=24.46 E-value=61 Score=21.11 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=17.7
Q ss_pred HHHHHHHHHHH-HcCCCCCceEEEEeChhHHHH
Q psy7212 13 KVKHRYFCEEV-SAGIPSDRIVIGGFSQGGALA 44 (75)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~~a 44 (75)
.++.+..+... +.++.......+|||.|..+.
T Consensus 311 ~dv~~a~~~~~~~~G~~~~~~~~~GHgiG~~l~ 343 (405)
T PRK14576 311 KAVFDSTMAVIKTSGLPHYNRGHLGHGDGVFLG 343 (405)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCCCCCCCCCC
Confidence 34444444444 455543334578999996543
No 422
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=24.23 E-value=1.3e+02 Score=16.92 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=14.0
Q ss_pred CCCCceEEEEeChhHHHHHHHHHh
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALT 50 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~ 50 (75)
+...++.++| ||.++.+-+..
T Consensus 11 l~~~~vlVvG---GG~va~rka~~ 31 (157)
T PRK06719 11 LHNKVVVIIG---GGKIAYRKASG 31 (157)
T ss_pred cCCCEEEEEC---CCHHHHHHHHH
Confidence 4567888888 66666665543
No 423
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=24.16 E-value=1.4e+02 Score=16.52 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=19.8
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCCCceEEEEeC
Q psy7212 6 EQGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFS 38 (75)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S 38 (75)
+......+.+.++++.+... .+.+++.+++|.
T Consensus 115 Es~~~~~~R~~~~~~~l~~~-~~~~~vlvVsHg 146 (177)
T TIGR03162 115 ESFADFYQRVSEFLEELLKA-HEGDNVLIVTHG 146 (177)
T ss_pred CCHHHHHHHHHHHHHHHHHh-CCCCeEEEEECH
Confidence 44555566666777665533 234678888886
No 424
>PLN03058 dynein light chain type 1 family protein; Provisional
Probab=24.04 E-value=1.2e+02 Score=16.84 Aligned_cols=32 Identities=19% Similarity=0.065 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeChhHHHH
Q psy7212 13 KVKHRYFCEEVSAGIPSDRIVIGGFSQGGALA 44 (75)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a 44 (75)
+++...+...+....+..=-+++|.|+|..++
T Consensus 69 kdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VT 100 (128)
T PLN03058 69 KRLALALKKEFDSAYGPAWHCIVGTSFGSYVT 100 (128)
T ss_pred HHHHHHHHHHHhhhhCCceEEEECCcEEEEEE
Confidence 44555554444221222223566999998764
No 425
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=23.97 E-value=1.4e+02 Score=16.43 Aligned_cols=46 Identities=7% Similarity=0.064 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCcccEEEEecc
Q psy7212 13 KVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 63 (75)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~ 63 (75)
.++.++++. .+.+.++++|...-..+.......+...++-.|+.+.
T Consensus 101 t~L~~~L~~-----~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da 146 (174)
T PF00857_consen 101 TDLDEILRK-----RGIDTVILCGVATDVCVLATARDAFDRGYRVIVVEDA 146 (174)
T ss_dssp SSHHHHHHH-----TTESEEEEEEESTTTHHHHHHHHHHHTT-EEEEEEEE
T ss_pred ccccccccc-----cccceEEEcccccCcEEehhHHHHHHCCCEEEEEChh
Confidence 345566655 4667999999999887755444333334555555443
No 426
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=23.83 E-value=1.5e+02 Score=19.22 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=17.2
Q ss_pred ceEEEEeChhHHHHHHHHHhC
Q psy7212 31 RIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 31 ~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
+++++|-+.+|..+...+.+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~ 22 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRL 22 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHH
Confidence 689999999998887776654
No 427
>PRK08671 methionine aminopeptidase; Provisional
Probab=23.62 E-value=76 Score=19.68 Aligned_cols=29 Identities=17% Similarity=0.048 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHH-HcCCCCCceEEEEeChhH
Q psy7212 12 GKVKHRYFCEEV-SAGIPSDRIVIGGFSQGG 41 (75)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg 41 (75)
..++.+.++... +.++.. -..+.||++|=
T Consensus 127 ~~dv~~~i~~vi~~~G~~~-~~~~~GHgiG~ 156 (291)
T PRK08671 127 VGEIGRVIEETIRSYGFKP-IRNLTGHGLER 156 (291)
T ss_pred HHHHHHHHHHHHHHcCCcc-cCCCcccCcCC
Confidence 345555555554 344432 24689999994
No 428
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=23.56 E-value=66 Score=19.95 Aligned_cols=29 Identities=17% Similarity=-0.030 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHH-HcCCCCCceEEEEeChhH
Q psy7212 12 GKVKHRYFCEEV-SAGIPSDRIVIGGFSQGG 41 (75)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg 41 (75)
..++.+.++... +.++.. -..+.|||+|=
T Consensus 126 ~~dV~~ai~~~i~~~G~~~-~~~~~GHgig~ 155 (291)
T cd01088 126 LGEIGEAIEEVIESYGFKP-IRNLTGHSIER 155 (291)
T ss_pred HHHHHHHHHHHHHHcCCEE-eecCCccCccC
Confidence 345555555544 344442 24788999994
No 429
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=23.48 E-value=1.5e+02 Score=16.67 Aligned_cols=38 Identities=32% Similarity=0.362 Sum_probs=26.2
Q ss_pred CceEEEEeChhHH--HHHHHHHhCCCcccEEEEecccCCC
Q psy7212 30 DRIVIGGFSQGGA--LALYSALTYPKKLAGVVALSCWLPM 67 (75)
Q Consensus 30 ~~~~l~G~S~Gg~--~a~~~a~~~p~~~~~~v~~~~~~~~ 67 (75)
..++|+|=|-.|- ++-.+...+|+.+...+...+..+-
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r 42 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPR 42 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GG
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCc
Confidence 4688999997774 4445667789888777776665543
No 430
>PLN03093 Protein SENSITIVITY TO RED LIGHT REDUCED 1; Provisional
Probab=23.33 E-value=1.2e+02 Score=19.14 Aligned_cols=16 Identities=19% Similarity=-0.076 Sum_probs=13.0
Q ss_pred CCceEEEEeChhHHHH
Q psy7212 29 SDRIVIGGFSQGGALA 44 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~a 44 (75)
..+++++|.|++.+.-
T Consensus 197 L~~ivliGNSFe~y~~ 212 (273)
T PLN03093 197 LNHIALFGNSFEMYEE 212 (273)
T ss_pred cCCEEEEeCCHHHHHH
Confidence 3589999999997663
No 431
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.26 E-value=2.1e+02 Score=18.12 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=27.3
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCceEEEEeCh--hHHHHHHHHHh
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQ--GGALALYSALT 50 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~--Gg~~a~~~a~~ 50 (75)
.+.....+.+++++. ...+...++.++|.|. |-.++..+..+
T Consensus 138 ~PcTp~ai~~ll~~~-~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ 181 (286)
T PRK14175 138 VPCTPLGIMEILKHA-DIDLEGKNAVVIGRSHIVGQPVSKLLLQK 181 (286)
T ss_pred CCCcHHHHHHHHHHc-CCCCCCCEEEEECCCchhHHHHHHHHHHC
Confidence 345566666777652 2235668899999987 66666666544
No 432
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=23.22 E-value=65 Score=18.21 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=13.7
Q ss_pred Chh-HHHHHHHHHhCCC
Q psy7212 38 SQG-GALALYSALTYPK 53 (75)
Q Consensus 38 S~G-g~~a~~~a~~~p~ 53 (75)
+|| |.++..+..++|+
T Consensus 31 ~WG~gGia~al~~k~p~ 47 (152)
T cd03331 31 HWGRGGLFTALEKRSDQ 47 (152)
T ss_pred CCCcchHHHHHHHhCCc
Confidence 699 6899999999884
No 433
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=23.20 E-value=51 Score=20.58 Aligned_cols=40 Identities=15% Similarity=0.042 Sum_probs=25.3
Q ss_pred cccHHHHHHHHHHHHHHcCCCCCc-eEEE--EeChhHHHHHHH
Q psy7212 8 GPGIGKVKHRYFCEEVSAGIPSDR-IVIG--GFSQGGALALYS 47 (75)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~--G~S~Gg~~a~~~ 47 (75)
.+.-...+..+++...+.++..+. +.|. ||++|+.-+...
T Consensus 137 lP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f 179 (264)
T cd08201 137 VPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDF 179 (264)
T ss_pred CCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccc
Confidence 333344566677666677776655 5666 599999655443
No 434
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.08 E-value=59 Score=21.14 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=17.8
Q ss_pred CCCceEEEEeChhHHHHHHHHH
Q psy7212 28 PSDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
+.+++.++|.|+.+.++-.+-.
T Consensus 115 ~a~kvLvvGDslm~gla~gl~~ 136 (354)
T COG2845 115 DADKVLVVGDSLMQGLAEGLDK 136 (354)
T ss_pred CCCEEEEechHHhhhhHHHHHH
Confidence 5678999999999998865543
No 435
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=22.98 E-value=2e+02 Score=17.82 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHH-HHHHHHhCCCcccEEEEecccC
Q psy7212 10 GIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGAL-ALYSALTYPKKLAGVVALSCWL 65 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~-a~~~a~~~p~~~~~~v~~~~~~ 65 (75)
.+.++..++++..... +..++.++|.+....- ++.++.++| .+-..+.+-|..
T Consensus 14 ~~~~d~~~vi~~a~~~--gv~~~~~~g~~~~~~~~~~~la~~y~-~v~~~~G~HP~~ 67 (256)
T COG0084 14 EFDEDRDEVIARAREA--GVKKMVVVGTDLEDFKRALELAEKYP-NVYAAVGVHPLD 67 (256)
T ss_pred hhcCCHHHHHHHHHHc--CCcEEEEeecCHHHHHHHHHHHHhCC-CeEEEEeeCCCc
Confidence 4455666666654333 3468999999999876 788899998 344444444443
No 436
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=22.93 E-value=11 Score=18.78 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=13.7
Q ss_pred CCCceEEEEeChhHHHHH
Q psy7212 28 PSDRIVIGGFSQGGALAL 45 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~ 45 (75)
..|+++++||+.|..+-.
T Consensus 50 r~DpV~ilgq~~gl~iy~ 67 (72)
T PF07578_consen 50 RKDPVFILGQSFGLFIYI 67 (72)
T ss_pred HcChHHHHHHhcChHHHH
Confidence 346799999999987643
No 437
>PHA01790 streptodornase
Probab=22.93 E-value=36 Score=21.66 Aligned_cols=15 Identities=27% Similarity=0.005 Sum_probs=12.1
Q ss_pred CCceEEEEeChhHHH
Q psy7212 29 SDRIVIGGFSQGGAL 43 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~ 43 (75)
..|-+|+|+|+||..
T Consensus 180 YNRsHLIaysLGG~n 194 (326)
T PHA01790 180 FVRSHLFADSLGGKS 194 (326)
T ss_pred ecccceeeecccCCc
Confidence 357899999999843
No 438
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=22.72 E-value=2.8e+02 Score=19.41 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=18.3
Q ss_pred CCCceEEEEeChhHHHHHHHHHhC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
+.++|+++|......++.++..+.
T Consensus 467 ~a~rI~i~G~G~S~~~A~~~~~~l 490 (638)
T PRK14101 467 NARRIEFYGLGNSNIVAQDAHYKF 490 (638)
T ss_pred cCCEEEEEEccHHHHHHHHHHHHH
Confidence 457899999998888887666543
No 439
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=22.69 E-value=1.2e+02 Score=19.61 Aligned_cols=33 Identities=15% Similarity=0.048 Sum_probs=24.6
Q ss_pred CCcCCCCcccHHHHHHHHHHHHHHcCCCCCceEEEEeC
Q psy7212 1 MVCAHEQGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFS 38 (75)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S 38 (75)
+++|.+-.++.+..+.+.++. -+..++.++.+|
T Consensus 163 iVAPSdMMDGrV~aIR~aLd~-----~g~~~v~ImSYs 195 (322)
T PRK13384 163 MLAPSAMMDGQVKAIRQGLDA-----AGFEHVAILAHS 195 (322)
T ss_pred eEecccccccHHHHHHHHHHH-----CCCCCCceeehh
Confidence 356777888888888888887 455567787655
No 440
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=22.56 E-value=93 Score=21.26 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEE
Q psy7212 11 IGKVKHRYFCEEVSAGIPSDRIVIGG 36 (75)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~G 36 (75)
.++.+...++..+...++.++|+++|
T Consensus 482 ~Tr~Lq~~iE~~ISk~y~gR~VnimG 507 (507)
T PF05600_consen 482 RTRELQKQIEADISKRYKGRPVNIMG 507 (507)
T ss_pred HHHHHHHHHHHHHHHHcCCCeeeccC
Confidence 35566677777664446778899987
No 441
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=22.33 E-value=1.2e+02 Score=19.63 Aligned_cols=32 Identities=16% Similarity=0.054 Sum_probs=22.2
Q ss_pred CcCCCCcccHHHHHHHHHHHHHHcCCCCCceEEEEeC
Q psy7212 2 VCAHEQGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFS 38 (75)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S 38 (75)
++|.+-.++.+..+.+.++. -+..++-++.+|
T Consensus 164 VAPSdMMDGrV~aIR~aLd~-----~g~~~v~ImSYs 195 (324)
T PF00490_consen 164 VAPSDMMDGRVGAIREALDE-----AGFSDVPIMSYS 195 (324)
T ss_dssp EEE-S--TTHHHHHHHHHHH-----TTCTTSEEEEEE
T ss_pred eccccccCCHHHHHHHHHHh-----CCCCCccEEech
Confidence 45667778888888888887 455678888877
No 442
>PRK13463 phosphatase PhoE; Provisional
Probab=22.18 E-value=1.7e+02 Score=16.87 Aligned_cols=42 Identities=10% Similarity=-0.059 Sum_probs=22.5
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHH
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
....+.+.+..+++.+.... +.+.+.+++|+-=-...+.++.
T Consensus 122 s~~~~~~R~~~~l~~i~~~~-~~~~vlvVsHg~~ir~~~~~~~ 163 (203)
T PRK13463 122 NFEAVHKRVIEGMQLLLEKH-KGESILIVSHAAAAKLLVGHFA 163 (203)
T ss_pred EHHHHHHHHHHHHHHHHHhC-CCCEEEEEeChHHHHHHHHHHh
Confidence 44445556666666654332 3356888877644444443433
No 443
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=22.07 E-value=2.4e+02 Score=20.25 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=29.8
Q ss_pred eEEEEeChhHHHHHHHHHhCC-CcccEEEEecccCCCCC
Q psy7212 32 IVIGGFSQGGALALYSALTYP-KKLAGVVALSCWLPMHK 69 (75)
Q Consensus 32 ~~l~G~S~Gg~~a~~~a~~~p-~~~~~~v~~~~~~~~~~ 69 (75)
++--+.|-||..++..+.+.. ..|.+++...|...+..
T Consensus 287 VIAssvSNGGgAal~AAEqD~~glIdgVvv~EP~v~~~~ 325 (690)
T PF10605_consen 287 VIASSVSNGGGAALAAAEQDTQGLIDGVVVSEPNVNLPP 325 (690)
T ss_pred EEEEeecCccHHHHhHhhcccCCceeeEEecCCccCCCC
Confidence 456678999999999888754 47999999998776553
No 444
>PRK09795 aminopeptidase; Provisional
Probab=21.90 E-value=76 Score=20.20 Aligned_cols=27 Identities=15% Similarity=-0.058 Sum_probs=14.3
Q ss_pred HHHHHHHHHH-HcCCCCCceEEEEeChh
Q psy7212 14 VKHRYFCEEV-SAGIPSDRIVIGGFSQG 40 (75)
Q Consensus 14 ~~~~~~~~~~-~~~~~~~~~~l~G~S~G 40 (75)
++.+..+..+ +.++...-.+-.||+.|
T Consensus 268 ~v~~~~~~~~~~~g~~~~~~h~~GHgiG 295 (361)
T PRK09795 268 QVDDAARRVITEAGYGDYFGHNTGHAIG 295 (361)
T ss_pred HHHHHHHHHHHHcCCCccCCCCCCccCC
Confidence 3444444433 34444323467899998
No 445
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=21.84 E-value=2.3e+02 Score=18.18 Aligned_cols=32 Identities=25% Similarity=0.133 Sum_probs=22.1
Q ss_pred CceEEEEeChhHHHHHHHHHhCCCcccEEEEec
Q psy7212 30 DRIVIGGFSQGGALALYSALTYPKKLAGVVALS 62 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~ 62 (75)
.+++++|-+.+|.-+...+.+.... ..+++++
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~-~~I~li~ 35 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFT-GELHLFS 35 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCC-CCEEEeC
Confidence 5799999999998887777664322 2345554
No 446
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=21.81 E-value=1.6e+02 Score=18.05 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=24.1
Q ss_pred CceEEEEeChhHHHH--HHHHHhCCCcccEEEEecc
Q psy7212 30 DRIVIGGFSQGGALA--LYSALTYPKKLAGVVALSC 63 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a--~~~a~~~p~~~~~~v~~~~ 63 (75)
-+++++|.|-.|-.. ..+....+..++.++++++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 379999999998554 3344445667788887766
No 447
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=21.79 E-value=59 Score=18.57 Aligned_cols=16 Identities=25% Similarity=0.092 Sum_probs=8.1
Q ss_pred EEEEeChhHHHHHHHH
Q psy7212 33 VIGGFSQGGALALYSA 48 (75)
Q Consensus 33 ~l~G~S~Gg~~a~~~a 48 (75)
-.+|+++++.++..++
T Consensus 42 g~mG~~lp~AiGaala 57 (179)
T cd03372 42 GSMGLASSIGLGLALA 57 (179)
T ss_pred cchhhHHHHHHHHHhc
Confidence 3445555555555444
No 448
>PLN03014 carbonic anhydrase
Probab=21.79 E-value=2.4e+02 Score=18.51 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=15.7
Q ss_pred CCCCceEEEEeChhHHHHHHH
Q psy7212 27 IPSDRIVIGGFSQGGALALYS 47 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~ 47 (75)
++.+.|+++|||-=|.+...+
T Consensus 217 L~V~~IVV~GHs~CGaV~Aa~ 237 (347)
T PLN03014 217 LKVENIVVIGHSACGGIKGLM 237 (347)
T ss_pred hCCCEEEEeCCCCchHHHHHH
Confidence 577799999999866554433
No 449
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=21.69 E-value=1.2e+02 Score=17.98 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=14.7
Q ss_pred CCceEEEEeChhHHHHHHHHH
Q psy7212 29 SDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 29 ~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
...+.++|+|+.=.....+..
T Consensus 179 ~~~~LFiG~S~~D~~i~~ll~ 199 (242)
T cd01406 179 KYTVLFIGYSLTDPNIRYLLE 199 (242)
T ss_pred cCcEEEEEcCCCCCcHHHHHH
Confidence 457999999988655544443
No 450
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=21.68 E-value=1.3e+02 Score=19.51 Aligned_cols=33 Identities=15% Similarity=0.073 Sum_probs=24.8
Q ss_pred CCcCCCCcccHHHHHHHHHHHHHHcCCCCCceEEEEeC
Q psy7212 1 MVCAHEQGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFS 38 (75)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S 38 (75)
+++|.+-.++.+..+.+.++. -+..++-++.+|
T Consensus 161 iVAPSdMMDGrV~aIR~aLd~-----~g~~~v~ImSYs 193 (323)
T PRK09283 161 IVAPSDMMDGRVGAIREALDE-----AGFTDVPIMSYS 193 (323)
T ss_pred EEEcccccccHHHHHHHHHHH-----CCCCCCceeecH
Confidence 356777888888888888887 355668888665
No 451
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=21.62 E-value=75 Score=18.88 Aligned_cols=29 Identities=10% Similarity=-0.034 Sum_probs=15.1
Q ss_pred HHHHHHHHHHH-HcCCCCCceEEEEeChhHH
Q psy7212 13 KVKHRYFCEEV-SAGIPSDRIVIGGFSQGGA 42 (75)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~~~~~l~G~S~Gg~ 42 (75)
.++...++... +.++.. ....+||++|=.
T Consensus 143 ~~v~~~~~~~~~~~g~~~-~~~~~GHgiG~~ 172 (247)
T TIGR00500 143 GEIGAAIQKYAEAKGFSV-VREYCGHGIGRK 172 (247)
T ss_pred HHHHHHHHHHHHHcCCEe-ccCccCCccCcc
Confidence 34444444444 333332 234689999964
No 452
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=21.45 E-value=2.2e+02 Score=17.67 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=17.9
Q ss_pred CceEEEEeChhHHHHHHHHHhC
Q psy7212 30 DRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
++++++|....+.+|..++.+.
T Consensus 43 ~~I~i~G~G~S~~~A~~~~~~l 64 (321)
T PRK11543 43 GKVVVSGIGKSGHIGKKIAATL 64 (321)
T ss_pred CcEEEEecChhHHHHHHHHHHH
Confidence 4799999998888888777654
No 453
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=21.44 E-value=1.3e+02 Score=15.99 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEeChhH
Q psy7212 13 KVKHRYFCEEVSAGIPSDRIVIGGFSQGG 41 (75)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg 41 (75)
+.+.++++. .+ .++++.||+=-.
T Consensus 94 ~~~~~~~~~-----~~-~~~~i~GH~H~~ 116 (135)
T cd07379 94 EELLNRVQR-----VR-PKLHVFGHIHEG 116 (135)
T ss_pred HHHHHHHHH-----HC-CcEEEEcCcCCc
Confidence 455666655 23 479999997543
No 454
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=21.38 E-value=1.2e+02 Score=19.67 Aligned_cols=33 Identities=9% Similarity=-0.001 Sum_probs=23.8
Q ss_pred CCcCCCCcccHHHHHHHHHHHHHHcCCCCCceEEEEeC
Q psy7212 1 MVCAHEQGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFS 38 (75)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S 38 (75)
+++|.+-.++.+..+.+.++. -+..++-++.+|
T Consensus 158 iVAPSdMMDGrV~aIR~aLd~-----~g~~~v~ImSYs 190 (320)
T cd04823 158 IVAPSDMMDGRIGAIREALDA-----EGFTNVSILSYA 190 (320)
T ss_pred EEEcccchhhHHHHHHHHHHH-----CCCCCCceeech
Confidence 356777778888888888887 355567777654
No 455
>KOG1752|consensus
Probab=21.38 E-value=61 Score=17.14 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=15.7
Q ss_pred CCCceEEEEeChhHHHHHHHHH
Q psy7212 28 PSDRIVIGGFSQGGALALYSAL 49 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~ 49 (75)
....+++.|...||.--+.-..
T Consensus 67 tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 67 TVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred CCCEEEECCEEEcCHHHHHHHH
Confidence 3457999999999976554443
No 456
>KOG1578|consensus
Probab=21.27 E-value=91 Score=19.66 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=19.7
Q ss_pred CCCCceEEEEeChhHHHHHHHHHhC
Q psy7212 27 IPSDRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
++.++|.++|||.=|.++..+....
T Consensus 151 lkvenIiv~ghs~cgGik~~m~~~~ 175 (276)
T KOG1578|consen 151 LKVENIIVIGHSLCGGIKGLMSFSL 175 (276)
T ss_pred hccceEEEeccccCCchhhcccccc
Confidence 5678999999999888877666543
No 457
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=21.26 E-value=2.3e+02 Score=17.84 Aligned_cols=14 Identities=29% Similarity=0.090 Sum_probs=9.1
Q ss_pred CCCceEEEEeChhH
Q psy7212 28 PSDRIVIGGFSQGG 41 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg 41 (75)
+.-..+++=||+||
T Consensus 87 D~~~gf~i~~slgG 100 (328)
T cd00286 87 DSLQGFFITHSLGG 100 (328)
T ss_pred CCccceEEEeecCC
Confidence 33345667788877
No 458
>PRK12474 hypothetical protein; Provisional
Probab=21.02 E-value=98 Score=20.80 Aligned_cols=16 Identities=19% Similarity=-0.226 Sum_probs=11.3
Q ss_pred EEEeChhHHHHHHHHH
Q psy7212 34 IGGFSQGGALALYSAL 49 (75)
Q Consensus 34 l~G~S~Gg~~a~~~a~ 49 (75)
-+|+++++.++..++.
T Consensus 390 smG~glpaAiGa~lA~ 405 (518)
T PRK12474 390 SIGQGLPLAAGAAVAA 405 (518)
T ss_pred ccCccHHHHHHHHHHC
Confidence 3677777777777764
No 459
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=20.97 E-value=87 Score=18.52 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=15.5
Q ss_pred CceEEEEeChhHHHHHHHH
Q psy7212 30 DRIVIGGFSQGGALALYSA 48 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a 48 (75)
....++|.|.|+.+.....
T Consensus 116 ~G~v~~G~SAGA~i~~~~~ 134 (217)
T cd03145 116 GGVVIGGTSAGAAVMSDTM 134 (217)
T ss_pred cCCEEEEccHHHHhhhhcc
Confidence 3578999999999987664
No 460
>PLN00416 carbonate dehydratase
Probab=20.96 E-value=2.2e+02 Score=17.67 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=16.5
Q ss_pred CCCCceEEEEeChhHHHHHHHH
Q psy7212 27 IPSDRIVIGGFSQGGALALYSA 48 (75)
Q Consensus 27 ~~~~~~~l~G~S~Gg~~a~~~a 48 (75)
++.+.|+++|||-=|.+...+.
T Consensus 137 L~V~~IVV~GHs~CGaV~Aa~~ 158 (258)
T PLN00416 137 LKVENILVIGHSCCGGIKGLMS 158 (258)
T ss_pred hCCCEEEEecCCCchHHHHHHh
Confidence 5777999999998776654443
No 461
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=20.93 E-value=1.1e+02 Score=18.51 Aligned_cols=30 Identities=17% Similarity=-0.163 Sum_probs=16.2
Q ss_pred EEEeChhHHHHHHHHHhCCCcccEEEEecc
Q psy7212 34 IGGFSQGGALALYSALTYPKKLAGVVALSC 63 (75)
Q Consensus 34 l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~~ 63 (75)
-+|++++..+...++.+....=+.++++.+
T Consensus 106 slG~gl~~avG~Ala~~~~~~~~~v~~i~G 135 (255)
T cd02012 106 SLGQGLSVAVGMALAEKLLGFDYRVYVLLG 135 (255)
T ss_pred chhhHHHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 456667777777777663222234444433
No 462
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=20.91 E-value=1.7e+02 Score=19.36 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=18.5
Q ss_pred CceEEEEeChhHHHHHHHHHhC
Q psy7212 30 DRIVIGGFSQGGALALYSALTY 51 (75)
Q Consensus 30 ~~~~l~G~S~Gg~~a~~~a~~~ 51 (75)
.+++|+|=..||..+..++.+.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~ 23 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR 23 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC
Confidence 4689999999999988887765
No 463
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=20.65 E-value=23 Score=20.27 Aligned_cols=28 Identities=14% Similarity=-0.050 Sum_probs=14.7
Q ss_pred HHHHHHHHHHH-HcCCCCCceEEEEeChh
Q psy7212 13 KVKHRYFCEEV-SAGIPSDRIVIGGFSQG 40 (75)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~~~~~l~G~S~G 40 (75)
.++.+.+.+.. +.++.......+|||.|
T Consensus 129 ~~v~~~~~~~~~~~g~~~~~~~~~GH~iG 157 (207)
T PF00557_consen 129 SDVYEAVREVLEEYGLEEPYPHGLGHGIG 157 (207)
T ss_dssp HHHHHHHHHHHHHTTEGEEBTSSSEEEES
T ss_pred chhhHHHHHHHHhhcccceeeeccccccc
Confidence 34444444444 33442122457899999
No 464
>KOG2088|consensus
Probab=20.61 E-value=75 Score=22.25 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=17.1
Q ss_pred CCCceEEEEeChhHHHHHHHH
Q psy7212 28 PSDRIVIGGFSQGGALALYSA 48 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a 48 (75)
+.-+..+.|||.||..+...+
T Consensus 250 p~~~~~~~ghslg~~~~~l~~ 270 (596)
T KOG2088|consen 250 PSYKLTGVGHSLGGLSASLLA 270 (596)
T ss_pred CCCceeEEecccccchhhhhh
Confidence 345789999999998887666
No 465
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=20.57 E-value=1.6e+02 Score=19.09 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=24.8
Q ss_pred CCcCCCCcccHHHHHHHHHHHHHHcCCCC-CceEEEEeC
Q psy7212 1 MVCAHEQGPGIGKVKHRYFCEEVSAGIPS-DRIVIGGFS 38 (75)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~G~S 38 (75)
+++|.+-.++.+..+.+.++. -+. .++-++.+|
T Consensus 157 iVAPSdMMDGrV~aIR~aLD~-----~G~~~~v~ImSYs 190 (320)
T cd04824 157 IVAPSDMMDGRVRAIKQALIQ-----AGLGNKVSVMSYS 190 (320)
T ss_pred EEecccccccHHHHHHHHHHH-----CCCccCCeeeehH
Confidence 356777888888888888887 455 578888655
No 466
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=20.51 E-value=1.7e+02 Score=16.05 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=24.6
Q ss_pred cCCCCcccHHHHHHHHHHHHH-HcCCCCCceEEEEeCh
Q psy7212 3 CAHEQGPGIGKVKHRYFCEEV-SAGIPSDRIVIGGFSQ 39 (75)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~S~ 39 (75)
+..++.+.+.+...++++.+. +.++..+.++-+=+|.
T Consensus 10 v~~n~~e~I~~at~eLl~~i~~~N~l~~~dIvSi~FT~ 47 (118)
T PF07736_consen 10 VEENTPEEILEATRELLEEILERNELSPEDIVSIIFTV 47 (118)
T ss_dssp -SSSSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEe
Confidence 345667778888888888887 6667777776665654
No 467
>KOG0681|consensus
Probab=20.18 E-value=74 Score=22.30 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=21.7
Q ss_pred CCCceEEEEeChhHHHHHHHHHhCCC
Q psy7212 28 PSDRIVIGGFSQGGALALYSALTYPK 53 (75)
Q Consensus 28 ~~~~~~l~G~S~Gg~~a~~~a~~~p~ 53 (75)
+..++.+.|++.+.++.-.+..+||-
T Consensus 194 ~~kRiN~GG~qa~dYL~~Lmq~Kyp~ 219 (645)
T KOG0681|consen 194 DVKRINWGGYQAGDYLSRLMQLKYPF 219 (645)
T ss_pred cceeeccCcchHHHHHHHHHhccCcc
Confidence 34689999999999998888888874
No 468
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=20.13 E-value=2.6e+02 Score=18.02 Aligned_cols=57 Identities=18% Similarity=0.103 Sum_probs=30.0
Q ss_pred CcccHHHHHHHHHHHHHHcCCCCCceEEEEeChhHHHHHHHHHhCCCccc--EEEEecccC
Q psy7212 7 QGPGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLA--GVVALSCWL 65 (75)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~~~--~~v~~~~~~ 65 (75)
+.+...+.+...-.+++...+.... ++|.|+|-.+....-...|...+ .+|.+.+..
T Consensus 92 ~~~~~~~~lg~aaA~~l~~~l~~gd--vigV~wGrTv~a~~~~l~~~~~~~~~vV~l~GG~ 150 (321)
T COG2390 92 ADDSILRRLGRAAAQYLESLLKPGD--VIGVGWGRTLSAVVDNLPPAPLRDVKVVQLTGGV 150 (321)
T ss_pred CchHHHHHHHHHHHHHHHHhCCCCC--EEEEeccHHHHHHHHhcCcCccCCeEEEECCCCC
Confidence 3344444455444444433344444 88999999886655555554433 344444443
Done!