RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7212
(75 letters)
>gnl|CDD|216940 pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This
family consists of both phospholipases and
carboxylesterases with broad substrate specificity, and
is structurally related to alpha/beta hydrolases
pfam00561.
Length = 213
Score = 87.8 bits (218), Expect = 2e-23
Identities = 29/52 (55%), Positives = 39/52 (75%)
Query: 21 EEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKSFP 72
E+ GIP+ RI+IGGFSQG A+ALY+ALT P+ L G++A S LP+ + FP
Sbjct: 93 AELKTGIPASRIIIGGFSQGAAVALYTALTSPQPLGGIIAFSGALPLPQKFP 144
>gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction
only].
Length = 207
Score = 53.8 bits (130), Expect = 1e-10
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 26 GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66
GI S RI++ GFSQG +AL LT P AG + S LP
Sbjct: 95 GIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLP 135
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 38.7 bits (90), Expect = 6e-05
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 28 PSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66
D++ + G S GG +AL A YP ++ +V + P
Sbjct: 40 GLDKVNLVGHSMGGLIALAYAAKYPDRVKALVLVGTVHP 78
>gnl|CDD|225176 COG2267, PldB, Lysophospholipase [Lipid metabolism].
Length = 298
Score = 38.5 bits (90), Expect = 6e-05
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 17 RYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 68
F E ++ P + + G S GG +AL YP ++ G+V S L +
Sbjct: 94 DAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLG 145
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 37.8 bits (88), Expect = 1e-04
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 27 IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLP 66
+ +V+ G S GGA+AL +A P+++AG+V +S L
Sbjct: 62 LGLGPVVLVGHSLGGAVALAAAARRPERVAGLVLISPPLR 101
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This
family contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 35.4 bits (82), Expect = 5e-04
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 9 PGIGKVKHRYFCEEVSAGIPSD--RIVIGGFSQGGALALYSALTYPKKLAGVVALS 62
PG G E V A P D RIV+ G S GG +AL A P+ A VV +
Sbjct: 35 PGHGASLGAPDAEAVLADAPLDPERIVLVGHSLGGGVALLLAARDPRVKAAVVLAA 90
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 35.0 bits (79), Expect = 0.001
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 30 DRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 67
+++V+ G S GGA+AL AL +P ++ G+V + P
Sbjct: 88 EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPP 125
>gnl|CDD|234315 TIGR03695, menH_SHCHC,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase. This protein catalyzes the formation of
SHCHC, or (1 R,6
R)-2-succinyl-6-hydroxy-2,
4-cyclohexadiene-1-carboxylate, by elmination of
pyruvate from
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylate (SEPHCHC). Note that SHCHC synthase activity
previously was attributed to MenD, which in fact is
SEPHCHC synthase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 252
Score = 34.1 bits (79), Expect = 0.002
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 16 HRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 63
+ + + + + G+S GG +ALY AL YP+++ G++ S
Sbjct: 57 AQLLLATLLDQLGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESG 104
>gnl|CDD|236695 PRK10439, PRK10439, enterobactin/ferric enterobactin esterase;
Provisional.
Length = 411
Score = 33.8 bits (78), Expect = 0.003
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 30 DRIVIGGFSQGGALALYSALTYPKKLAGVVAL--SCWLP 66
DR V+ G S GG ALY+ L +P++ V++ S W P
Sbjct: 288 DRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWP 326
>gnl|CDD|224561 COG1647, COG1647, Esterase/lipase [General function prediction
only].
Length = 243
Score = 33.5 bits (77), Expect = 0.003
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 30 DRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMH 68
D I + G S GG AL A YP K +V + P++
Sbjct: 85 DEIAVVGLSMGGVFALKLAYHYPPK--KIVPMCA--PVN 119
>gnl|CDD|214007 cd12808, Esterase_713_like-1, Uncharacterized enzymes similar to
novel bacterial esterase that cleaves esters on
halogenated cyclic compounds. This family contains
uncharacterized proteins similar to a novel bacterial
esterase (Alcaligenes esterase 713) with the alpha/beta
hydrolase fold but does not contain the GXSXXG
pentapeptide around the active site serine residue as
commonly seen in other enzymes of this class. Esterase
713 shows negligible sequence homology to other esterase
and lipase enzymes. It is active as a dimer and cleaves
esters on halogenated cyclic compounds though its
natural substrate is unknown.
Length = 309
Score = 33.8 bits (78), Expect = 0.004
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 33 VIGGFSQGGALALYSALTYPKKLAGVVAL 61
++ SQGG A +A P + VVAL
Sbjct: 191 IVVAHSQGGGFAFEAARARPDLVRAVVAL 219
>gnl|CDD|216102 pfam00756, Esterase, Putative esterase. This family contains
Esterase D. However it is not clear if all members of
the family have the same function. This family is
related to the pfam00135 family.
Length = 245
Score = 33.2 bits (76), Expect = 0.005
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 29 SDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 62
D + G S GG ALY AL YP V + S
Sbjct: 108 PDGRALAGQSMGGLGALYLALKYPDLFGSVSSFS 141
>gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/
magnesium ion binding / thiamin pyrophosphate binding.
Length = 1655
Score = 32.5 bits (74), Expect = 0.010
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 27 IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 62
I ++ + G+S G +ALY AL + K+ G V +S
Sbjct: 1442 ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIIS 1477
>gnl|CDD|226584 COG4099, COG4099, Predicted peptidase [General function prediction
only].
Length = 387
Score = 31.8 bits (72), Expect = 0.018
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 27 IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 62
I RI + G S+GG A +P A V ++
Sbjct: 266 IDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIA 301
>gnl|CDD|221019 pfam11187, DUF2974, Protein of unknown function (DUF2974). This
bacterial family of proteins has no known function.
Length = 224
Score = 31.1 bits (71), Expect = 0.027
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 29 SDRIVIGGFSQGGALALYSALTYPKKL 55
I +GG S+GG LA+Y+A+ L
Sbjct: 83 PGPIYLGGHSKGGNLAVYAAMNAEPDL 109
>gnl|CDD|188121 TIGR01250, pro_imino_pep_2, proline-specific peptidase, Bacillus
coagulans-type subfamily. This model describes a
subfamily of the alpha/beta fold family of hydrolases.
Characterized members include prolinases (Pro-Xaa
dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC
3.4.11.5), and a leucyl aminopeptidase.
Length = 289
Score = 30.8 bits (70), Expect = 0.030
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 18 YFCEEVSA---GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVV 59
YF +E+ + D+ + G S GG LA AL Y + L G++
Sbjct: 82 YFVDELEEVREKLGLDKFYLLGHSWGGMLAQEYALKYGQHLKGLI 126
>gnl|CDD|223700 COG0627, COG0627, Predicted esterase [General function prediction
only].
Length = 316
Score = 30.1 bits (68), Expect = 0.061
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 30 DRIVIGGFSQGGALALYSALTYPKKLAGVVALS 62
D I G S GG AL AL +P + + S
Sbjct: 152 DGRAIAGHSMGGYGALKLALKHPDRFKSASSFS 184
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 30.3 bits (68), Expect = 0.063
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 26 GIPSDRIVIGGFSQGGALALYSALT----YPKKLAGVVALSCWLPMHKSFPA 73
GI RI + G S GG LAL AL A V +S L + S +
Sbjct: 148 GIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTSSAAS 199
>gnl|CDD|225256 COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic
ion transport and metabolism].
Length = 299
Score = 29.7 bits (67), Expect = 0.090
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 29 SDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 62
+D V+ G S GG ++LY+ L +P++ V++ S
Sbjct: 176 ADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQS 209
>gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 236
Score = 29.3 bits (66), Expect = 0.12
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 30 DRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 67
RI + GF GG LAL +A P V A +
Sbjct: 112 KRIGVVGFCMGGGLALLAATRAP----EVKAAVAFYGG 145
>gnl|CDD|203252 pfam05448, AXE1, Acetyl xylan esterase (AXE1). This family
consists of several bacterial acetyl xylan esterase
proteins. Acetyl xylan esterases are enzymes that
hydrolyse the ester linkages of the acetyl groups in
position 2 and/or 3 of the xylose moieties of natural
acetylated xylan from hardwood. These enzymes are one of
the accessory enzymes which are part of the xylanolytic
system, together with xylanases, beta-xylosidases,
alpha-arabinofuranosidases and methylglucuronidases;
these are all required for the complete hydrolysis of
xylan.
Length = 319
Score = 29.2 bits (66), Expect = 0.15
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 29 SDRIVIGGFSQGGALALYSALTYPKKLAGVVA 60
+RI + G SQGGALAL +A P ++ VVA
Sbjct: 173 EERIGVYGASQGGALALAAAALSP-RIKKVVA 203
>gnl|CDD|130799 TIGR01738, bioH, pimelyl-[acyl-carrier protein] methyl ester
esterase. This CoA-binding enzyme is required for the
production of pimeloyl-coenzyme A, the substrate of the
BioF protein early in the biosynthesis of biotin. Its
exact function is unknown, but is proposed in ref 2.
This enzyme belongs to the alpha/beta hydrolase fold
family (Pfam model pfam00561). Members of this family
are restricted to the Proteobacteria [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 245
Score = 28.6 bits (64), Expect = 0.18
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 21 EEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 62
E ++A P D + G+S GG +AL+ A T+P ++ +V ++
Sbjct: 57 EAIAAQAP-DPAIWLGWSLGGLVALHIAATHPDRVRALVTVA 97
>gnl|CDD|226040 COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 312
Score = 28.9 bits (65), Expect = 0.19
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 26 GIPSDRIVIGGFSQGGALALYSALTYPKKLAGV 58
GI R+ + G S GG +A A YP A +
Sbjct: 140 GIDPARVYVTGLSNGGRMANRLACEYPDIFAAI 172
>gnl|CDD|234678 PRK00175, metX, homoserine O-acetyltransferase; Provisional.
Length = 379
Score = 28.6 bits (65), Expect = 0.19
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 26 GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 63
GI V+GG S GG AL A+ YP ++ + ++
Sbjct: 144 GITRLAAVVGG-SMGGMQALEWAIDYPDRVRSALVIAS 180
>gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism].
Length = 682
Score = 28.8 bits (65), Expect = 0.20
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 29 SDRIVIGGFSQGGALALYSALTYPKKLAGVVA 60
DRIV G S GG L A P AG++A
Sbjct: 526 PDRIVAIGGSAGGMLMGAVANMAPDLFAGIIA 557
>gnl|CDD|238382 cd00741, Lipase, Lipase. Lipases are esterases that can
hydrolyze long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation", the process of becoming
active at the lipid/water interface, although several
examples of lipases have been identified that do not
undergo interfacial activation . The active site of a
lipase contains a catalytic triad consisting of Ser -
His - Asp/Glu, but unlike most serine proteases, the
active site is buried inside the structure. A "lid" or
"flap" covers the active site, making it inaccessible
to solvent and substrates. The lid opens during the
process of interfacial activation, allowing the lipid
substrate access to the active site.
Length = 153
Score = 28.2 bits (63), Expect = 0.30
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 28 PSDRIVIGGFSQGGALALYSAL----TYPKKLAGVVALSC 63
P +I + G S GGALA + L +L V
Sbjct: 26 PDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGP 65
>gnl|CDD|216291 pfam01083, Cutinase, Cutinase.
Length = 179
Score = 28.1 bits (63), Expect = 0.30
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 28 PSDRIVIGGFSQGGALA 44
P+ +IV+GG+SQG A+
Sbjct: 79 PNTKIVLGGYSQGAAVM 95
>gnl|CDD|233393 TIGR01392, homoserO_Ac_trn, homoserine O-acetyltransferase. This
family describes homoserine-O-acetyltransferase, an
enzyme of methionine biosynthesis. This model has been
rebuilt to identify sequences more broadly, including a
number of sequences suggested to be homoserine
O-acetyltransferase based on proximity to other Met
biosynthesis genes [Amino acid biosynthesis, Aspartate
family].
Length = 351
Score = 28.0 bits (63), Expect = 0.37
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 26 GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 62
GI V+GG S GG AL A+ YP+++ +V L+
Sbjct: 124 GIEQIAAVVGG-SMGGMQALEWAIDYPERVRAIVVLA 159
>gnl|CDD|215315 PLN02578, PLN02578, hydrolase.
Length = 354
Score = 27.9 bits (62), Expect = 0.41
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 33 VIGGFSQGGALALYSALTYPKKLAGVVAL 61
V+ G S GG AL +A+ YP+ +AGV L
Sbjct: 155 VLVGNSLGGFTALSTAVGYPELVAGVALL 183
>gnl|CDD|226339 COG3818, COG3818, Predicted acetyltransferase, GNAT superfamily
[General function prediction only].
Length = 167
Score = 27.5 bits (61), Expect = 0.42
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 18 YFCEEVSAGIPSDRIVIGGFSQGGAL--ALYSALTYPKKLAGVVALSC 63
+F E DR+V+ ++G + ALY+ L +LAG L+C
Sbjct: 76 WFRERYENFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTC 123
>gnl|CDD|224932 COG2021, MET2, Homoserine acetyltransferase [Amino acid transport
and metabolism].
Length = 368
Score = 27.3 bits (61), Expect = 0.64
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 26 GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 63
GI V+GG S GG AL A+ YP ++ + ++
Sbjct: 144 GIKKLAAVVGG-SMGGMQALEWAIRYPDRVRRAIPIAT 180
>gnl|CDD|214006 cd12807, Esterase_713, Novel bacterial esterase 713 that cleaves
esters on halogenated cyclic compounds. This family
contains proteins similar to a novel bacterial esterase
(esterase 713) with the alpha/beta hydrolase fold that
cleaves esters on halogenated cyclic compounds. This
Alcaligenes esterase, however, does not contain the
GXSXXG pentapeptide around the active site serine
residue as seen in other esterase families. This enzyme
is active as a dimer though its natural substrate is
unknown. It has two distinct disulfide bridges; one
formed between adjacent cysteines appears to facilitate
the correct formation of the oxyanion cleft in the
catalytic site. Esterase 713 also resembles human
pancreatic lipase in its location of the acidic residue
of the catalytic triad. It is possibly exported from the
cytosol to the periplasmic space. A large majority of
sequences in this family have yet to be characterized.
Length = 315
Score = 27.3 bits (61), Expect = 0.65
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 33 VIGGFSQGGALALYSALTYPKKLAGVVAL 61
V+ G SQ G L +AL P + G+V++
Sbjct: 192 VLLGHSQSGPFPLEAALLRPAGVKGIVSV 220
>gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.
Length = 212
Score = 27.2 bits (61), Expect = 0.69
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 29 SDRIVIGGFSQGGALALYSALTYPKKLAGVVA 60
DR+ I G S GG L + P VA
Sbjct: 63 PDRLAIWGGSYGGYLTGAALNQRPDLFKAAVA 94
>gnl|CDD|119023 pfam10503, Esterase_phd, Esterase PHB depolymerase. This family of
proteins include acetyl xylan esterases (AXE), feruloyl
esterases (FAE), and poly(3-hydroxybutyrate) (PHB)
depolymerases.
Length = 226
Score = 27.3 bits (60), Expect = 0.71
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 26 GIPSDRIVIGGFSQGGALALYSALTYPKKLAGV 58
G + R+ + G S G ALA A +P + A V
Sbjct: 99 GFDAARVYVAGLSAGAALADLLAHCHPDRFAAV 131
>gnl|CDD|225989 COG3458, COG3458, Acetyl esterase (deacetylase) [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 321
Score = 27.0 bits (60), Expect = 0.76
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 31 RIVIGGFSQGGALALYSALTYPKKLAGV 58
RI + G SQGG LAL +A P+ A V
Sbjct: 177 RIGVTGGSQGGGLALAAAALDPRIKAVV 204
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 27.1 bits (60), Expect = 0.90
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 27 IPSDRIVIGGFSQGGALALYSALTYPKKLAGVV 59
+ +RI I G S GG + L +A P+ A V
Sbjct: 470 VDPERIGITGGSYGGYMTLLAATKTPRFKAAVA 502
>gnl|CDD|130895 TIGR01836, PHA_synth_III_C, poly(R)-hydroxyalkanoic acid synthase,
class III, PhaC subunit. This model represents the PhaC
subunit of a heterodimeric form of polyhydroxyalkanoic
acid (PHA) synthase. Excepting the PhaC of Bacillus
megaterium (which needs PhaR), all members require PhaE
(TIGR01834) for activity and are designated class III.
This enzyme builds ester polymers for carbon and energy
storage that accumulate in inclusions, and both this
enzyme and the depolymerase associate with the
inclusions. Class III enzymes polymerize
short-chain-length hydroxyalkanoates [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 350
Score = 26.6 bits (59), Expect = 1.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 29 SDRIVIGGFSQGGALALYSALTYPKKLAGVV 59
D+I + G QGG +L A YP K+ +V
Sbjct: 135 LDQISLLGICQGGTFSLCYAALYPDKIKNLV 165
>gnl|CDD|216688 pfam01764, Lipase_3, Lipase (class 3).
Length = 141
Score = 26.1 bits (58), Expect = 1.4
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 15/63 (23%)
Query: 1 MVCAHEQGPGIGKVKHRYFCE---EVSAGI-----------PSDRIVIGGFSQGGALALY 46
+V GKV H+ F + V I P +IV+ G S GGALA
Sbjct: 21 LVPFDLLFVSGGKV-HKGFLDAYTSVRDQILPELKRLIEKYPDYKIVVTGHSLGGALASL 79
Query: 47 SAL 49
+A
Sbjct: 80 AAA 82
>gnl|CDD|224664 COG1750, COG1750, Archaeal serine proteases [General function
prediction only].
Length = 579
Score = 26.3 bits (58), Expect = 1.4
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 22 EVSAGIPSDRIVIGGFSQGG--ALALYSALTY 51
+V + +D V+GG S GG +A+Y+AL
Sbjct: 100 DVYIAVEADSPVVGGPSAGGYMTVAIYAALMG 131
>gnl|CDD|225375 COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily
[General function prediction only].
Length = 264
Score = 26.2 bits (58), Expect = 1.4
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 6 EQGPGIGKVKHRYFCEE-----VSAGIP--SDRIVIGGFSQGGALALYSALTYPKKLAGV 58
G G R F E + A S+R I G S GG L++ LTYP
Sbjct: 106 FYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRY 165
Query: 59 VALS 62
+S
Sbjct: 166 GLIS 169
>gnl|CDD|219788 pfam08314, Sec39, Secretory pathway protein Sec39. Mnaimneh et al
identified Sec39p as a protein involved in ER-Golgi
transport in a large scale promoter shut down analysis
of essential yeast genes. Kraynack et al. (2005) showed
that Sec39p (Dsl3p) is required for Golgi-ER retrograde
transport and is part of a very stable protein complex
that also includes Dsl1p (in mammals ZW10), Tip20p
(Rint-1) and the ER localized Q-SNARE proteins Ufe1p
(syntaxin-18), Sec20p and Use1p. This was confirmed in a
genome-wide analysis of protein complexes by Gavin et al
(2006).
Length = 675
Score = 26.3 bits (58), Expect = 1.5
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 18 YFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLA 56
Y + S S +I L+L + LT+P L+
Sbjct: 295 YLNSDNSLEALSLSYLIAELELQALLSLSNPLTFPSSLS 333
>gnl|CDD|137836 PRK10349, PRK10349, carboxylesterase BioH; Provisional.
Length = 256
Score = 26.1 bits (57), Expect = 1.6
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 10 GIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 62
G G + E V P D+ + G+S GG +A ALT+P+++ +V ++
Sbjct: 55 GFGALSLADMAEAVLQQAP-DKAIWLGWSLGGLVASQIALTHPERVQALVTVA 106
>gnl|CDD|236660 PRK10162, PRK10162, acetyl esterase; Provisional.
Length = 318
Score = 25.8 bits (57), Expect = 1.8
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 17 RYFCEEVSA-GIPSDRIVIGGFSQGGALALYSAL 49
YF + GI RI G S G LAL SAL
Sbjct: 140 CYFHQHAEDYGINMSRIGFAGDSAGAMLALASAL 173
>gnl|CDD|131480 TIGR02427, protocat_pcaD, 3-oxoadipate enol-lactonase. Members of
this family are 3-oxoadipate enol-lactonase. Note that
the substrate is known as 3-oxoadipate enol-lactone,
2-oxo-2,3-dihydrofuran-5-acetate,
4,5-Dihydro-5-oxofuran-2-acetate, and
5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the
catalyzes the fourth step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. This enzyme also acts in catechol
degradation. In genomes that catabolize both catechol
and protocatechuate, two forms of this enzyme may be
found. All members of the seed alignment for this model
were chosen from within protocatechuate degradation
operons of at least three genes of the pathway, from
genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 251
Score = 25.8 bits (57), Expect = 1.9
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 31 RIVIGGFSQGGALALYSALTYPKKLAGVVALSC 63
R V G S GG +A A P ++ +V LS
Sbjct: 80 RAVFCGLSLGGLIAQGLAARRPDRVRALV-LSN 111
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 25.8 bits (57), Expect = 2.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 28 PSDRIVIGGFSQGGALALYSA 48
P D +V+GG G A A+Y+A
Sbjct: 212 PYDVLVVGGGPAGAAAAIYAA 232
>gnl|CDD|114306 pfam05576, Peptidase_S37, PS-10 peptidase S37. These serine
proteases have been found in Streptomyces species.
Length = 448
Score = 25.9 bits (56), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 36 GFSQGGALALYSALTYPKKLAGVVA 60
G S+GG A Y YP+ + GVVA
Sbjct: 140 GGSKGGMTATYYERFYPRDMDGVVA 164
>gnl|CDD|132386 TIGR03343, biphenyl_bphD, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
hydrolase. Members of this family are
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or
HOPD hydrolase, the BphD protein of biphenyl
degradation. BphD acts on the product of ring
meta-cleavage by BphC. Many species carrying bphC and
bphD are capable of degrading polychlorinated biphenyls
as well as biphenyl itself.
Length = 282
Score = 25.6 bits (56), Expect = 2.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 26 GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVV 59
+ ++ + G S GGA AL AL YP ++ ++
Sbjct: 97 ALDIEKAHLVGNSMGGATALNFALEYPDRIGKLI 130
>gnl|CDD|226651 COG4188, COG4188, Predicted dienelactone hydrolase [General
function prediction only].
Length = 365
Score = 25.5 bits (56), Expect = 2.5
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 11 IGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSA 48
+ + ++ + R+ + G S GG A+ A
Sbjct: 140 LDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELA 177
>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 207
Score = 25.6 bits (57), Expect = 2.6
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 26 GIPSDRIVIGGFSQGGALALYSAL 49
G RI + G S GG LA AL
Sbjct: 67 GADPSRIAVAGDSAGGNLAAAVAL 90
>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 25.5 bits (56), Expect = 2.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 21 EEVSAGIPSDRIVIGGFSQGGALALYSA 48
EE +A D +V+GG G A A+Y+A
Sbjct: 204 EEFNAKDAYDVLVVGGGPAGAAAAIYAA 231
>gnl|CDD|217816 pfam03959, FSH1, Serine hydrolase (FSH1). This is a family of
serine hydrolases.
Length = 209
Score = 25.3 bits (56), Expect = 2.8
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 34 IGGFSQGGALALY 46
I GFSQG ALA
Sbjct: 104 ILGFSQGAALAAI 116
>gnl|CDD|165193 PHA02857, PHA02857, monoglyceride lipase; Provisional.
Length = 276
Score = 25.2 bits (55), Expect = 3.4
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 14 VKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPM 67
V+H + G+P + + G S G +++ +A P ++ +S P+
Sbjct: 84 VQHVVTIKSTYPGVP---VFLLGHSMGATISILAAYKNPNLFTAMILMS---PL 131
>gnl|CDD|238287 cd00519, Lipase_3, Lipase (class 3). Lipases are esterases that
can hydrolyze long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation," the process of becoming active
at the lipid/water interface, although several examples
of lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site. .
Length = 229
Score = 25.1 bits (55), Expect = 3.7
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 15/59 (25%)
Query: 1 MVCAHEQGPGIGKVKHRYF-------CEEVSAGI-------PSDRIVIGGFSQGGALAL 45
V GKV H F +V + P +I++ G S GGALA
Sbjct: 86 PVPLDPPLCSGGKV-HSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGALAS 143
>gnl|CDD|233593 TIGR01840, esterase_phb, esterase, PHB depolymerase family. This
model describes a subfamily among lipases of the
ab-hydrolase family. This subfamily includes bacterial
depolymerases for poly(3-hydroxybutyrate) (PHB) and
related polyhydroxyalkanoates (PHA), as well as acetyl
xylan esterases, feruloyl esterases, and others from
fungi [Fatty acid and phospholipid metabolism,
Degradation].
Length = 212
Score = 25.1 bits (55), Expect = 3.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 27 IPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 62
I +R+ + G S GG + TYP AG + +
Sbjct: 92 IDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNA 127
>gnl|CDD|130316 TIGR01249, pro_imino_pep_1, proline iminopeptidase, Neisseria-type
subfamily. This model represents one of two related
families of proline iminopeptidase in the alpha/beta
fold hydrolase family. The fine specificities of the
various members, including both the range of short
peptides from which proline can be removed and whether
other amino acids such as alanine can be also removed,
may vary among members.
Length = 306
Score = 25.2 bits (55), Expect = 4.2
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 33 VIGGFSQGGALALYSALTYPKKLAGVV 59
V GG S G LAL A T+P+ + G+V
Sbjct: 99 VFGG-SWGSTLALAYAQTHPEVVTGLV 124
>gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 25.0 bits (55), Expect = 4.8
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 24 SAGIPS--DRIVIGGFSQGGALALYSALTYPKKL 55
S +PS D +V+G GA LY+AL P L
Sbjct: 3 STILPSQFDVLVVGS----GAAGLYAALCLPSHL 32
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 24.8 bits (54), Expect = 5.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 32 IVIGGFSQGGALALYSALTYPKK 54
I++ GF+ G+L Y+ TY +K
Sbjct: 246 IMVLGFTAAGSLCFYTFTTYMQK 268
>gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase;
Provisional.
Length = 371
Score = 24.7 bits (54), Expect = 5.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 17 RYFCEEVSA--GIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALSCWLPMHKSFPA 73
R E ++A G+P+DRI++G S+ + A+ P VV L P+H+ +P
Sbjct: 74 RALREAIAARTGVPADRIILGNGSEDLIAVICRAVLRPGDR--VVTLYPSFPLHEDYPT 130
>gnl|CDD|187720 cd08651, FMT_core_like_4, Formyl transferase catalytic core
domain found in a group of proteins with unknown
functions. Formyl transferase catalytic core domain
found in a group of proteins with unknown functions.
Formyl transferase catalyzes the transfer of one-carbon
groups, specifically the formyl- or hydroxymethyl-
group. This domain contains a Rossmann fold and it is
the catalytic domain of the enzyme.
Length = 180
Score = 24.5 bits (54), Expect = 5.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 31 RIVIGGFSQGGALALYSALTYPKKLAGVVAL 61
RIV G + +AL + L ++ GV+ L
Sbjct: 1 RIVFIGCVEFSLIALEAILEAGGEVVGVITL 31
>gnl|CDD|211851 TIGR03611, RutD, pyrimidine utilization protein D. This protein is
observed in operons extremely similar to that
characterized in E. coli K-12 responsible for the import
and catabolism of pyrimidines, primarily uracil. This
protein is a member of the hydrolase, alpha/beta fold
family defined by pfam00067.
Length = 248
Score = 24.3 bits (53), Expect = 6.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 36 GFSQGGALALYSALTYPKKLAGVVALSCWLPM 67
G + GG + L AL YP++L +V ++ W
Sbjct: 85 GHALGGLIGLQLALDYPERLTSLVLINGWSRP 116
>gnl|CDD|204080 pfam08840, BAAT_C, BAAT / Acyl-CoA thioester hydrolase C
terminal. This catalytic domain is found at the C
terminal of acyl-CoA thioester hydrolases and bile
acid-CoA:amino acid N-acetyltransferases (BAAT).
Length = 211
Score = 24.5 bits (54), Expect = 6.1
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 30 DRIVIGGFSQGGALALYSALTYPKKLAGVVALSC 63
D+I + G S+GG LAL A ++ K+++ VV+++
Sbjct: 22 DKIGLLGISKGGELALSMA-SFLKQISAVVSING 54
>gnl|CDD|224662 COG1748, LYS9, Saccharopine dehydrogenase and related proteins
[Amino acid transport and metabolism].
Length = 389
Score = 24.6 bits (54), Expect = 6.4
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 9 PGIGKVKHRYFCEEVSAGIPSDRIVIGGFSQGGALALYSALT 50
PGI V Y +E+ I S I +GG + G L A T
Sbjct: 127 PGITNVLAAYAAKELFDEIESIDIYVGGLGEHGDNPLGYATT 168
>gnl|CDD|235135 PRK03592, PRK03592, haloalkane dehalogenase; Provisional.
Length = 295
Score = 24.6 bits (54), Expect = 6.6
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 30 DRIVIGGFSQGGALALYSALTYPKKLAGVV 59
D +V+ G G AL A +P ++ G+
Sbjct: 93 DDVVLVGHDWGSALGFDWAARHPDRVRGIA 122
>gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated.
Length = 994
Score = 24.3 bits (53), Expect = 8.3
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 34 IGGFSQGGALALYSALTY--PKKLAGVVA 60
+ G+SQGG Y A Y K +A +V
Sbjct: 145 LVGYSQGGMFC-YQAAAYRRSKDIASIVT 172
>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 24.0 bits (53), Expect = 8.6
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 21 EEVSAGIPSDRIVIGGFSQGGALALYSA 48
EE++A P D +V+GG G A A+Y+A
Sbjct: 204 EELNAKDPYDVLVVGGGPAGAAAAIYAA 231
>gnl|CDD|227283 COG4947, COG4947, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 227
Score = 24.1 bits (52), Expect = 9.1
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 17 RYFCEEVSAGIPSDRIVIGGFSQGGALALYSALTYPKKLAGVVALS 62
RY EE G ++ G S G A +P V+ALS
Sbjct: 92 RYVIEEALPG----STIVSGCSMGAYHAANFVFRHPHLFTKVIALS 133
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.440
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,852,030
Number of extensions: 302208
Number of successful extensions: 410
Number of sequences better than 10.0: 1
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 72
Length of query: 75
Length of database: 10,937,602
Length adjustment: 45
Effective length of query: 30
Effective length of database: 8,941,672
Effective search space: 268250160
Effective search space used: 268250160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)