BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7214
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19536|COX5B_MOUSE Cytochrome c oxidase subunit 5B, mitochondrial OS=Mus musculus
GN=Cox5b PE=1 SV=1
Length = 128
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 1 DPYYNGPFKRTSGTRDDPNLVRSAFKSRLVGCVCEEDQYHIVWMWVEADMPRRCA-CGHW 59
DPY P K SGT++DPNLV S R+VGC+CEED ++W W+ +RC CG
Sbjct: 59 DPYNMLPPKAASGTKEDPNLVPSISNKRIVGCICEEDNCTVIWFWLHKGESQRCPNCGTH 118
Query: 60 FKL 62
+KL
Sbjct: 119 YKL 121
>sp|P12075|COX5B_RAT Cytochrome c oxidase subunit 5B, mitochondrial OS=Rattus norvegicus
GN=Cox5b PE=1 SV=2
Length = 129
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 1 DPYYNGPFKRTSGTRDDPNLVRSAFKSRLVGCVCEEDQYHIVWMWVEADMPRRCA-CGHW 59
DPY P K SGT++DPNLV S R+VGC+CEED ++W W+ +RC CG
Sbjct: 60 DPYNMLPPKAASGTKEDPNLVPSVSNKRIVGCICEEDNCTVIWFWLHQGESQRCPNCGTH 119
Query: 60 FKL 62
+KL
Sbjct: 120 YKL 122
>sp|P00428|COX5B_BOVIN Cytochrome c oxidase subunit 5B, mitochondrial OS=Bos taurus
GN=COX5B PE=1 SV=2
Length = 129
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 1 DPYYNGPFKRTSGTRDDPNLVRSAFKSRLVGCVCEEDQYHIVWMWVEADMPRRC-ACGHW 59
DPY K TSGT++DPNLV S R+VGC+CEED ++W W+ +RC +CG
Sbjct: 60 DPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTH 119
Query: 60 FKL 62
+KL
Sbjct: 120 YKL 122
>sp|P10606|COX5B_HUMAN Cytochrome c oxidase subunit 5B, mitochondrial OS=Homo sapiens
GN=COX5B PE=1 SV=2
Length = 129
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1 DPYYNGPFKRTSGTRDDPNLVRSAFKSRLVGCVCEEDQYHIVWMWVEADMPRRCA-CGHW 59
DPY K SGTR+DPNLV S R+VGC+CEED +VW W+ +RC CG
Sbjct: 60 DPYNVLAPKGASGTREDPNLVPSISNKRIVGCICEEDNTSVVWFWLHKGEAQRCPRCGAH 119
Query: 60 FKL 62
+KL
Sbjct: 120 YKL 122
>sp|Q5S3G4|COX5B_PIG Cytochrome c oxidase subunit 5B, mitochondrial OS=Sus scrofa
GN=COX5B PE=2 SV=1
Length = 129
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 1 DPYYNGPFKRTSGTRDDPNLVRSAFKSRLVGCVCEEDQYHIVWMWVEADMPRRC-ACGHW 59
DPY K SGT++DPNLV S R+VGC+CEED ++W WV +RC +CG
Sbjct: 60 DPYNILAPKAASGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWVHKGETQRCPSCGTH 119
Query: 60 FKL 62
+KL
Sbjct: 120 YKL 122
>sp|Q5REG2|COX5B_PONAB Cytochrome c oxidase subunit 5B, mitochondrial OS=Pongo abelii
GN=COX5B PE=2 SV=1
Length = 129
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 1 DPYYNGPFKRTSGTRDDPNLVRSAFKSRLVGCVCEEDQYHIVWMWVEADMPRRCA-CGHW 59
DPY K SGTR+DPNLV S R+VGC+CEED +VW W+ +RC CG
Sbjct: 60 DPYNVLAPKGASGTREDPNLVPSISNKRIVGCICEEDNTSVVWFWLHKGEAQRCPRCGAH 119
Query: 60 FKL 62
+KL
Sbjct: 120 YKL 122
>sp|Q710D6|COX5B_VULVU Cytochrome c oxidase subunit 5B, mitochondrial OS=Vulpes vulpes
GN=COX5B PE=1 SV=1
Length = 128
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 1 DPYYNGPFKRTSGTRDDPNLVRSAFKSRLVGCVCEEDQYHIVWMWVEADMPRRC-ACGHW 59
DPY K +GT++DPNLV S R+VGC+CEED ++W W+ +RC +CG
Sbjct: 59 DPYNILAPKAAAGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTH 118
Query: 60 FKL 62
+KL
Sbjct: 119 YKL 121
>sp|Q9SSB8|CX5B2_ARATH Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis
thaliana GN=COX5B-2 PE=2 SV=1
Length = 171
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 3 YYNGPFKRTSGTRDDPNLVRSAFKSRLVGCVC--EEDQYHIVWMWVEADMPRRC-ACGHW 59
+ GPF GT++ P +V+S + R+VGC ED++ +VW W+E C C +
Sbjct: 96 FPEGPF----GTKEAPAVVKSYYDMRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQY 151
Query: 60 FKLKLI 65
FKL+++
Sbjct: 152 FKLEVV 157
>sp|Q9LW15|CX5B1_ARATH Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis
thaliana GN=COX5B-1 PE=2 SV=1
Length = 176
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 3 YYNGPFKRTSGTRDDPNLVRSAFKSRLVGCVC--EEDQYHIVWMWVEADMPRRC-ACGHW 59
+ GPF GT++ P +V+S + R+VGC ED++ +VW W+E C C +
Sbjct: 97 FPEGPF----GTKEAPAIVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQY 152
Query: 60 FKLKLI 65
F+L+++
Sbjct: 153 FELEVV 158
>sp|P79010|COX4_SCHPO Cytochrome c oxidase subunit 4, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cox4 PE=2 SV=1
Length = 164
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 13 GTRDDPNLVRSAFKSRLVGCVCEEDQYH-IVWMWVEADMPRRCA-CGHWFKLKLI 65
GT DP +V S R +GC H ++WM V D RRC CG +KLK +
Sbjct: 101 GTLTDPIMVTSLDPYRHIGCTGSPSGSHNLIWMTVYKDKLRRCPECGSVYKLKFM 155
>sp|P29505|COX5_DICDI Cytochrome c oxidase subunit 5 OS=Dictyostelium discoideum GN=cxeA
PE=1 SV=3
Length = 120
Score = 37.0 bits (84), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 13 GTRDDPNLVRSAFKSRLVGCVCEEDQYH-IVWMWVEADMPRRCA-CGHWFKLKLICRGG 69
GT P +V S F SR+V C + + H I++ V P C CG FKLK I G
Sbjct: 57 GTLKSPVIVESIFHSRIVACEGGDGEEHDILFHTVAEKKPTICLDCGQVFKLKHISSEG 115
>sp|Q9SSS5|CX5BL_ARATH Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis
thaliana GN=At1g52710 PE=2 SV=2
Length = 90
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 13 GTRDDPNLVRSAFKSRLVGCVC--EEDQYHIVWMWVEADMPRRC-ACGHWFK 61
GT++ P +V+S F R +GC ED + +VW W++ C C +F+
Sbjct: 24 GTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGKSFECPVCSQYFE 75
>sp|Q5GTR3|PNP_WOLTR Polyribonucleotide nucleotidyltransferase OS=Wolbachia sp. subsp.
Brugia malayi (strain TRS) GN=pnp PE=3 SV=1
Length = 755
Score = 33.9 bits (76), Expect = 0.67, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 3 YYNGPFKRTSGTRDDPNLVRSAFKSR 28
YYN PF R SG R P RS+F +R
Sbjct: 714 YYNSPFNRKSGHRKRPVHSRSSFSNR 739
>sp|Q2LR39|RSMH_SYNAS Ribosomal RNA small subunit methyltransferase H OS=Syntrophus
aciditrophicus (strain SB) GN=rsmH PE=3 SV=1
Length = 315
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 13/49 (26%)
Query: 19 NLVRSAFKSRLVGCVCEEDQYHIVWMWVEADMPRRCACGHWFKLKLICR 67
+LV++ F+S GC+C ADMP CACG +LK+I R
Sbjct: 253 SLVKNGFRSLEKGCIC------------PADMP-VCACGQSPRLKVITR 288
>sp|P06809|COX4_NEUCR Cytochrome c oxidase subunit 4, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=cox-4 PE=3 SV=2
Length = 186
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 13 GTRDDPNLVRSAFKSRLVGCV-CEEDQYHIVWMWVEADMP-RRCA-CGHWFKLKLI 65
GT ++P VRSA + GC D ++++W+ + + P RC CG+ +K+ +
Sbjct: 99 GTMENPISVRSAGDEQYAGCTGFPADSHNVIWLTMTRERPVERCPECGNVYKMDYV 154
>sp|A5D3L5|HEM3_PELTS Porphobilinogen deaminase OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=hemC PE=3 SV=1
Length = 312
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 119 FSTQLKASTLCGQLDMALESLLPTPGSLLSKLVLGRDPKVHH 160
F+ +L+A+ L G++DMA+ S+ P L LV+G K H
Sbjct: 61 FTKELEAAMLRGEIDMAVHSMKDLPTELPEGLVIGAVCKREH 102
>sp|Q9ULI4|KI26A_HUMAN Kinesin-like protein KIF26A OS=Homo sapiens GN=KIF26A PE=2 SV=3
Length = 1882
Score = 31.2 bits (69), Expect = 5.0, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 89 LGQSDNLTKKDSNEQSV-----------KPIQQMTRTKSTKFSTQLKASTLCGQLDMALE 137
LG+S + KDS+ QS+ + I++ T+FS ++ A +CG+ D +L
Sbjct: 473 LGKSYTMIGKDSSPQSLGIVPCAISWLFRLIEERRERTGTRFSVRVSAVEVCGR-DQSLR 531
Query: 138 SLLP--TPGSL 146
LL PGSL
Sbjct: 532 DLLAEVAPGSL 542
>sp|P36155|YK55_YEAST Uncharacterized protein YKR075C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YKR075C PE=1 SV=1
Length = 307
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 77 NWSKWILSSVGYLGQSDNLTKKDSNEQSVKPIQQMTRTKSTK-FSTQLKASTLC 129
NW+K +V Y +LT DSNE + P+Q K TK + LK +T C
Sbjct: 104 NWNKETDVTVLY---GPDLTNIDSNENEISPVQNQIDQKQTKNLKSALKKNTEC 154
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,827,881
Number of Sequences: 539616
Number of extensions: 2945760
Number of successful extensions: 5507
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5494
Number of HSP's gapped (non-prelim): 18
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)