RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7214
         (201 letters)



>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos
          taurus) [TaxId: 9913]}
          Length = 98

 Score = 96.0 bits (239), Expect = 9e-27
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 1  DPYYNGPFKRTSGTRDDPNLVRSAFKSRLVGCVCEEDQYHIVWMWVEADMPRRCA-CGHW 59
          DPY     K TSGT++DPNLV S    R+VGC+CEED   ++W W+     +RC  CG  
Sbjct: 29 DPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCPSCGTH 88

Query: 60 FKLK 63
          +KL 
Sbjct: 89 YKLV 92


>d1lf6a2 b.30.5.5 (A:11-287) Bacterial glucoamylase, N-terminal
           domain {Thermoanaerobacterium thermosaccharolyticum
           [TaxId: 1517]}
          Length = 277

 Score = 28.6 bits (64), Expect = 0.42
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 67  RGGVHVAIGSNWSKWILSSVGYLGQSDNLT 96
           R  V+ A+ SN   W   S+GY   +D +T
Sbjct: 173 RDNVYTALSSN-IGWKGYSIGYYKVNDIMT 201


>d1t70a_ d.159.1.9 (A:) Putative phosphatase DR1281 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 255

 Score = 27.9 bits (62), Expect = 0.68
 Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 53  RCACGHWFKLKLICRGGVHVAIGSNWSK------WILSSVGYLGQSDNLTKKDSNEQSVK 106
           + A G     ++    G H  + +  ++         +  G+ G  D++           
Sbjct: 155 KEAMGWHLAGRVAAVIGTHTHVPTADTRILKGGTAYQTDAGFTGPHDSIIGSAIEG---- 210

Query: 107 PIQQMTRTKSTKFSTQLKASTLCG 130
           P+Q+    +  ++      + L G
Sbjct: 211 PLQRFLTERPHRYGVAEGRAELNG 234


>d1ccda_ a.101.1.1 (A:) Clara cell 17kDa protein {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 77

 Score = 25.9 bits (57), Expect = 1.2
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 86  VGYLGQ-SDNLTKKDSNEQ---SVKPIQQMTRTKSTKFSTQLKASTLCGQ 131
              L   +     +++  Q    V  + Q TR    K + ++  S LC Q
Sbjct: 24  EAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEKILTSPLCEQ 73


>d2z06a1 d.159.1.10 (A:1-252) Hypothetical protein TTHA0625 {Thermus
           thermophilus [TaxId: 274]}
          Length = 252

 Score = 26.0 bits (57), Expect = 2.9
 Identities = 8/84 (9%), Positives = 22/84 (26%), Gaps = 10/84 (11%)

Query: 53  RCACGHWFKLKLICRGGVHVAIGSNWSK------WILSSVGYLGQSDNLTKKDSNEQSVK 106
           + A  H+   +     G H  + +  +          + VG  G   ++   +       
Sbjct: 152 KMALAHYLDGRASAVLGTHTHVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVET---- 207

Query: 107 PIQQMTRTKSTKFSTQLKASTLCG 130
            + +    +   F      +    
Sbjct: 208 FLARFLTGRPQPFRAAQGKARFHA 231


>d1ulva4 b.30.5.5 (A:2-273) Glucodextranase, domain N {Arthrobacter
           globiformis [TaxId: 1665]}
          Length = 272

 Score = 25.5 bits (56), Expect = 5.1
 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 67  RGGVHVAIGSNWSKWILSSVGYLGQSDNLTKKDSN 101
              V  A+ S+   +   + GY+G SD  T   ++
Sbjct: 163 ATPVATALVSS-VGFGAVANGYVGTSDGWTDLAAD 196


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 752,953
Number of extensions: 32139
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 8
Length of query: 201
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,295,466
Effective search space: 155455920
Effective search space used: 155455920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)