BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7216
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 147 bits (372), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 65/97 (67%), Positives = 85/97 (87%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
G+KAV+AESYERIHRSNLVGMG+ PL++LPGENAD+L LTG+ERYTI IP++ KP K+Q
Sbjct: 790 GIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKVQ 849
Query: 65 VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
V++D G+ F ++RFDT+V++ Y+ +GGILNYMIRKM
Sbjct: 850 VKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKM 886
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 145 bits (366), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 64/97 (65%), Positives = 83/97 (85%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
G+KAV+AESYERIHRSNLVGMG+ PL++LPGENADSL LTG+ERYTI IP++ P +Q
Sbjct: 810 GIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADSLGLTGRERYTIIIPENLTPRMHVQ 869
Query: 65 VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
V++D G+ F ++RFDT+V++ Y+ +GGILNYMIRKM
Sbjct: 870 VKLDTGKTFQAVIRFDTDVELTYFHNGGILNYMIRKM 906
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 3 FQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQK 62
F G +A+I +S+ RIH +NL G+ PL F + AD K+ ++ TI+ D P +
Sbjct: 653 FLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPGKP 710
Query: 63 LQ--VEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
L ++ +G + +++L E I +++ G LN M
Sbjct: 711 LTCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 748
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 3 FQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQK 62
F G +A+I +S+ RIH +NL G+ PL F + AD K+ ++ TI+ D P +
Sbjct: 653 FLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPGKP 710
Query: 63 LQ--VEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
L ++ +G + +++L E I +++ G LN M
Sbjct: 711 LTCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 748
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 3 FQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQK 62
F G +A+I +S+ RIH +NL G+ PL F + AD K+ ++ TI+ D P +
Sbjct: 653 FLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPGKP 710
Query: 63 LQ--VEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
L ++ +G + +++L E I +++ G LN M
Sbjct: 711 LTCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 748
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
G +A+I +S+ RIH +NL G+ PL F + AD K+ ++ TI+ D P + L+
Sbjct: 654 GGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPGKPLK 711
Query: 65 --VEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
++ +G + +++L E I +++ G LN M
Sbjct: 712 CIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 747
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
G +A+I +S+ RIH +NL G+ PL F + AD K+ ++ TI+ D P + L+
Sbjct: 655 GGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPGKPLK 712
Query: 65 --VEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
++ +G + +++L E I +++ G LN M
Sbjct: 713 CIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 748
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
G +A+I +S+ RIH +NL G+ PL F + AD K+ ++ TI+ D P + L+
Sbjct: 654 GGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPGKPLK 711
Query: 65 --VEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
++ +G + +++L E I +++ G LN M
Sbjct: 712 CIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 747
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
G +A+I +S+ RIH +NL G+ PL F + AD K+ ++ TI+ D P + L+
Sbjct: 654 GGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPGKPLK 711
Query: 65 --VEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
++ +G + +++L E I +++ G LN M
Sbjct: 712 CIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 747
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
G +A+I +S+ RIH +NL G+ PL F + AD K+ ++ TI+ D P + L+
Sbjct: 655 GGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPGKPLK 712
Query: 65 --VEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
++ +G + +++L E I +++ G LN M
Sbjct: 713 CIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 748
>pdb|2PKP|A Chain A, Crystal Structure Of 3-Isopropylmalate Dehydratase (Leud)
From Methhanocaldococcus Jannaschii Dsm2661 (Mj1271)
Length = 170
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 3 FQGVKAVIAESYERIHRSNLVGMGIAPL 30
+ G+KAVIA+S+ RI N + +G+ P+
Sbjct: 76 YCGIKAVIAKSFARIFYRNAINVGLIPI 103
>pdb|1V7L|A Chain A, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
pdb|1V7L|B Chain B, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
Length = 163
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 20/98 (20%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
G+ VIAES+ RI N + +GI PL E L +
Sbjct: 78 GIAGVIAESFGRIFYRNAINIGI-PLLLGKTEGLKDGDLV-----------------TVN 119
Query: 65 VEVDDGRKFSVILRFDTEVDILY--YKHGGILNYMIRK 100
E + RK IL F+ D L + GGIL Y+ R+
Sbjct: 120 WETGEVRKGDEILMFEPLEDFLLEIVREGGILEYIRRR 157
>pdb|3NZJ|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex
With Ligand 2a
pdb|3NZJ|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex
With Ligand 2a
pdb|3NZW|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
Length = 287
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 27 IAPLQFLPGENADSLKLTGKERY-----TIRIPDDAKPHQKLQVEVDDGRKFSVILRFDT 81
+ LQ+ +N +S +TG ++ ++ +P A P Q L+ DD R ++
Sbjct: 15 VKELQYDNEQNLESDFVTGASQFQRLAPSLTVPPIASPQQFLRAHTDDSRNPDCKIKIAH 74
Query: 82 EVDILYYK-HGGIL 94
L ++ GGI+
Sbjct: 75 GTTTLAFRFQGGII 88
>pdb|4B4T|5 Chain 5, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 287
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 27 IAPLQFLPGENADSLKLTGKERY-----TIRIPDDAKPHQKLQVEVDDGRKFSVILRFDT 81
+ LQ+ +N +S +TG ++ ++ +P A P Q L+ DD R ++
Sbjct: 15 VKELQYDNEQNLESDFVTGASQFQRLAPSLTVPPIASPQQFLRAHTDDSRNPDCKIKIAH 74
Query: 82 EVDILYYK-HGGIL 94
L ++ GGI+
Sbjct: 75 GTTTLAFRFQGGII 88
>pdb|3Q3W|A Chain A, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni.
pdb|3Q3W|B Chain B, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni
Length = 203
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
G++A+IA S+ I ++N +G G+ ++ E + I D+ K Q
Sbjct: 99 GIRAIIAPSFADIFKNNALGNGLLTIELAKDE-------------VLEIVDELKKSQDKN 145
Query: 65 VEV 67
+E+
Sbjct: 146 IEI 148
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 22 LVGMGIAPLQFLPG---ENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILR 78
L GI+ L+F+P EN +SL L +I +P++ P Q L+V I R
Sbjct: 111 LTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENF-PTQNLKVLDFQNNAIHYISR 169
Query: 79 FDT 81
DT
Sbjct: 170 KDT 172
>pdb|2WMK|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The A-Lewisy
Pentasaccharide Blood Group Antigen.
pdb|2WMK|B Chain B, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The A-Lewisy
Pentasaccharide Blood Group Antigen
Length = 606
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 43 LTGKERYTIRIPDDAKPHQKLQVEVDD 69
LTGK IPDD KP+ +Q+ DD
Sbjct: 62 LTGKWE---NIPDDLKPYTVIQLHPDD 85
>pdb|2WMI|B Chain B, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 In Complex With The A-Trisaccharide Blood
Group Antigen
Length = 606
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 43 LTGKERYTIRIPDDAKPHQKLQVEVDD 69
LTGK IPDD KP+ +Q+ DD
Sbjct: 62 LTGKWE---NIPDDLKPYTVIQLHPDD 85
>pdb|2WMI|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 In Complex With The A-Trisaccharide Blood
Group Antigen.
pdb|2WMJ|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The B-Trisaccharide
Blood Group Antigen.
pdb|2WMJ|B Chain B, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The B-Trisaccharide
Blood Group Antigen
Length = 606
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 43 LTGKERYTIRIPDDAKPHQKLQVEVDD 69
LTGK IPDD KP+ +Q+ DD
Sbjct: 62 LTGKWE---NIPDDLKPYTVIQLHPDD 85
>pdb|3VBA|A Chain A, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|B Chain B, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|C Chain C, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|D Chain D, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|E Chain E, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|F Chain F, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
Length = 176
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 5 GVKAVIAESYERIHRSNLVGMGI 27
G+ VIAES+ RI N + +G+
Sbjct: 80 GISCVIAESFARIFYRNAINVGL 102
>pdb|2GSR|A Chain A, Structure Of Porcine Class Pi Glutathione S-Transferase
pdb|2GSR|B Chain B, Structure Of Porcine Class Pi Glutathione S-Transferase
Length = 207
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 44 TGKERYTIRIPDDAKPHQKLQVEVDDGRKFSV 75
GKE+Y +P+ KP + L + G+ F V
Sbjct: 111 AGKEKYVKELPEHLKPFETLLSQNQGGQAFVV 142
>pdb|2DT8|A Chain A, Fatty Acid Binding Of A Degv Family Protein From Thermus
Thermophilus
Length = 280
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 4 QGVKAVIAESYERIHRSNLVGMGIAPLQFL 33
Q ++AV+AE ER+ R + V +A L+FL
Sbjct: 137 QSLEAVLAE-LERLRRDHFVRFSVATLEFL 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,058,420
Number of Sequences: 62578
Number of extensions: 117898
Number of successful extensions: 265
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 24
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)