Query psy7216
Match_columns 102
No_of_seqs 175 out of 1161
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 21:05:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 99.9 2.3E-26 7.9E-31 191.7 9.1 101 2-102 787-887 (888)
2 2pkp_A Homoaconitase small sub 99.9 4.3E-25 1.5E-29 155.0 6.9 86 2-101 75-160 (170)
3 3vba_A Isopropylmalate/citrama 99.9 8.1E-25 2.8E-29 154.2 6.7 88 2-101 77-164 (176)
4 1v7l_A 3-isopropylmalate dehyd 99.9 2E-24 6.9E-29 150.7 5.2 83 2-101 75-158 (163)
5 1c96_A Mitochondrial aconitase 99.9 1.4E-23 4.9E-28 172.9 9.9 97 2-101 651-751 (753)
6 2hcu_A 3-isopropylmalate dehyd 99.7 1.8E-18 6.2E-23 124.9 4.2 78 2-91 109-187 (213)
7 1l5j_A Aconitate hydratase 2; 99.7 3.7E-18 1.3E-22 142.2 5.9 86 2-102 267-353 (865)
8 3q3w_A 3-isopropylmalate dehyd 99.7 2.6E-18 8.7E-23 123.3 3.6 79 1-91 95-177 (203)
9 3h5j_A 3-isopropylmalate dehyd 99.7 2.2E-17 7.5E-22 115.7 3.6 78 2-91 88-169 (171)
10 3ugu_A S-arrestin; arrestin fo 31.3 20 0.00068 27.5 1.7 29 6-34 159-191 (380)
11 1qys_A TOP7; alpha-beta, novel 24.6 90 0.0031 18.9 3.5 8 93-100 36-43 (106)
12 3idw_A Actin cytoskeleton-regu 22.2 8.7 0.0003 22.8 -1.5 27 3-29 11-37 (72)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=99.93 E-value=2.3e-26 Score=191.71 Aligned_cols=101 Identities=64% Similarity=1.144 Sum_probs=89.2
Q ss_pred cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecCCC
Q psy7216 2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFDT 81 (102)
Q Consensus 2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~~~ 81 (102)
+++||+||||+||||||++||+|+|+|||+|+++++++.+++.+++.++|++.+.+++|+.+++.+++|++|++.++++|
T Consensus 787 ~~~Gi~aVIA~SFarIf~~Nli~~Gllpl~~~~~~~~~~~~~~~~~~i~i~l~~~~~~g~~v~v~~~~G~~~~~~~~~~t 866 (888)
T 2b3y_A 787 FLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKVQVKLDTGKTFQAVMRFDT 866 (888)
T ss_dssp HHTTEEEEEESCBCHHHHHHHHHHTCEEEEECTTCCHHHHTCCSCSCEEECCCSSCCTTCEEEEEETTSCEEEEEECCCS
T ss_pred HHcCeeEEEEhhHHHHHHhhhhhcCCceEeecccccHHHhccCCCceEEEEcccccCCCcEEEEEeCCCeEEEEEecCCC
Confidence 67999999999999999999999999999999888888777667788999977668889766544478889999988889
Q ss_pred HHHHHHHHhCChHHHHHHhhC
Q psy7216 82 EVDILYYKHGGILNYMIRKML 102 (102)
Q Consensus 82 ~~e~~ii~aGGll~~~~~~~~ 102 (102)
++|++|+++||+|||++++++
T Consensus 867 ~~e~~~~~aGGiL~yv~~~~~ 887 (888)
T 2b3y_A 867 DVELTYFLNGGILNYMIRKMA 887 (888)
T ss_dssp HHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHhh
Confidence 999999999999999999874
No 2
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=4.3e-25 Score=154.97 Aligned_cols=86 Identities=22% Similarity=0.415 Sum_probs=70.9
Q ss_pred cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecCCC
Q psy7216 2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFDT 81 (102)
Q Consensus 2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~~~ 81 (102)
+++|++||||+|||||||+||+|+|+||++|+ ++.+. +++.++||+. ++. |+ +.++|+++++. .+ +
T Consensus 75 ~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~~l~--~gd~i~idl~----~~~-v~-~~~~g~~~~~~-~~-~ 140 (170)
T 2pkp_A 75 KYCGIKAVIAKSFARIFYRNAINVGLIPIIAN----TDEIK--DGDIVEIDLD----KEE-IV-ITNKNKTIKCE-TP-K 140 (170)
T ss_dssp HTTTCCEEEESCBCHHHHHHHHHHTCEEEECC----GGGCC--TTCEEEEETT----TTE-EE-EGGGTEEEECB-CC-C
T ss_pred HHhCCcEEEEchHHHHHHhhHHHCCCceEEec----HHHcC--CCcEEEEECC----CCE-EE-ECCCCeEEEEE-eC-C
Confidence 57999999999999999999999999999996 55553 5567999975 453 32 33578888774 35 9
Q ss_pred HHHHHHHHhCChHHHHHHhh
Q psy7216 82 EVDILYYKHGGILNYMIRKM 101 (102)
Q Consensus 82 ~~e~~ii~aGGll~~~~~~~ 101 (102)
+.+++++++||++||+++++
T Consensus 141 ~~~~~~l~aGGll~~~~~~~ 160 (170)
T 2pkp_A 141 GLEREILAAGGLVNYLKKRK 160 (170)
T ss_dssp HHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999875
No 3
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=8.1e-25 Score=154.24 Aligned_cols=88 Identities=20% Similarity=0.416 Sum_probs=72.1
Q ss_pred cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecCCC
Q psy7216 2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFDT 81 (102)
Q Consensus 2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~~~ 81 (102)
+++|++||||+|||||||+||+|+|+||++++ ++++.++. | +.++||+.+ + +| .+.++|+++++. ++ |
T Consensus 77 ~~~Gi~aVIA~SFA~If~~N~in~Gl~~i~~~--~~~~~~~~-g-d~i~idl~~----~-~v-~~~~~g~~~~~~-~l-~ 144 (176)
T 3vba_A 77 KGAGISCVIAESFARIFYRNAINVGLPLIECK--GISEKVNE-G-DELEVNLET----G-EI-KNLTTGEVLKGQ-KL-P 144 (176)
T ss_dssp HHTTCCEEEESCBCHHHHHHHHHTTCCEEECT--THHHHCCT-T-CEEEEETTT----C-EE-EETTTCCEEECC-CC-C
T ss_pred HHhCCcEEEeccHHHHHHhhHHHcCCCeEEcc--hHHHhcCC-C-CEEEEECCC----C-EE-EeCCCCeEEEEe-cC-C
Confidence 67899999999999999999999999999886 35666654 4 568999753 4 23 334678888887 56 9
Q ss_pred HHHHHHHHhCChHHHHHHhh
Q psy7216 82 EVDILYYKHGGILNYMIRKM 101 (102)
Q Consensus 82 ~~e~~ii~aGGll~~~~~~~ 101 (102)
++++++++|||++||++++.
T Consensus 145 ~~~~~ii~aGGli~~~k~~~ 164 (176)
T 3vba_A 145 EFMMEILEAGGLMPYLKKKM 164 (176)
T ss_dssp HHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHhc
Confidence 99999999999999999864
No 4
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=99.90 E-value=2e-24 Score=150.70 Aligned_cols=83 Identities=27% Similarity=0.399 Sum_probs=68.1
Q ss_pred cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeE-EEEEecCC
Q psy7216 2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRK-FSVILRFD 80 (102)
Q Consensus 2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~-~~~~~~~~ 80 (102)
+++|++||||+|||||||+||+|+|+||++|+ ++.+. +++.++||+. +|. | . +|++ +++. .+
T Consensus 75 ~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~~l~--~gd~i~idl~----~~~-v--~--~g~~~~~~~-~~- 137 (163)
T 1v7l_A 75 KALGIAGVIAESFGRIFYRNAINIGIPLLLGK----TEGLK--DGDLVTVNWE----TGE-V--R--KGDEILMFE-PL- 137 (163)
T ss_dssp HHHTCCEEEESCBCHHHHHHHHHHTCCEEESC----CTTCC--TTCEEEEETT----TTE-E--E--ETTEEEECE-EC-
T ss_pred HHhCCCEEEEchHHHHHHhhHHHCCCceEEec----HHHcC--CCcEEEEEcc----CCE-E--E--CCcEEEEEE-cC-
Confidence 57899999999999999999999999999996 44443 5567999974 453 3 2 5666 7663 35
Q ss_pred CHHHHHHHHhCChHHHHHHhh
Q psy7216 81 TEVDILYYKHGGILNYMIRKM 101 (102)
Q Consensus 81 ~~~e~~ii~aGGll~~~~~~~ 101 (102)
++.+++++++||++||+++++
T Consensus 138 ~~~~~~~l~aGGll~~~~~~~ 158 (163)
T 1v7l_A 138 EDFLLEIVREGGILEYIRRRG 158 (163)
T ss_dssp CHHHHHHHHTTSHHHHHHHSC
T ss_pred CHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999875
No 5
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=99.89 E-value=1.4e-23 Score=172.94 Aligned_cols=97 Identities=27% Similarity=0.431 Sum_probs=77.9
Q ss_pred cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEE--ecCCeE--EEEEe
Q psy7216 2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVE--VDDGRK--FSVIL 77 (102)
Q Consensus 2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~--~~~g~~--~~~~~ 77 (102)
+++||+||||+|||||||+||+|+|+|||+|+++++++.++ ++|.++|+....+.+|..+++. .++|++ +++.+
T Consensus 651 ~~~Gi~avIa~sfarI~~~N~i~~Gllpl~~~~~~~~~~l~--~gd~i~I~gl~~l~~g~~v~~~i~~~~g~~~~~~~~~ 728 (753)
T 1c96_A 651 RHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIH--PVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNH 728 (753)
T ss_dssp HHTTEEEEEESCBCHHHHHHHHHTTCEEEEESSGGGGGGCC--TTCEEEEECGGGCCTTCCEEEEEECTTSCEEEEEEEC
T ss_pred HHcCeeEEEehhHHHHHHhhhhhcCCcceeecCcchhhhcC--CCCEEEEcChHHcCCCceEEEEEEecCCcEEEEEEeC
Confidence 68999999999999999999999999999998777788664 5677999822236678755443 346765 45555
Q ss_pred cCCCHHHHHHHHhCChHHHHHHhh
Q psy7216 78 RFDTEVDILYYKHGGILNYMIRKM 101 (102)
Q Consensus 78 ~~~~~~e~~ii~aGGll~~~~~~~ 101 (102)
++ |++|++|+++||+|||++++.
T Consensus 729 ~~-t~~e~~~~~aGGlLnyvk~~~ 751 (753)
T 1c96_A 729 TF-NETQIEWFRAGSALNRMKELQ 751 (753)
T ss_dssp CC-CHHHHHHHHHTSHHHHHHHHS
T ss_pred CC-CHHHHHHHHcCCHHHHHHHhh
Confidence 65 999999999999999999863
No 6
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=99.73 E-value=1.8e-18 Score=124.92 Aligned_cols=78 Identities=24% Similarity=0.263 Sum_probs=60.4
Q ss_pred cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhc-cCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecCC
Q psy7216 2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLK-LTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFD 80 (102)
Q Consensus 2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~-~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~~ 80 (102)
+.+||+||||+|||||||+||+|+|+||++++++ +++.+. .+.++.++||+.+ + +|+ .++| ++++. +
T Consensus 109 ~~~Gi~aVIA~SFArIF~~N~in~GlLpl~~~~~-~~~~l~~~~~G~~i~VDl~~----~-~I~--~~~g-~~~f~--i- 176 (213)
T 2hcu_A 109 ADYGFKVIVAGSFGDIHYNNDLNNGILPIIQPKE-VRDKLAKLKPTDEVTVNLFE----Q-KIY--SPVG-DFSFD--I- 176 (213)
T ss_dssp HHHTCCEEEESCBCHHHHHHHHTTTCEEEECCHH-HHHHHHTSCTTCEEEEETTT----T-EEE--ETTE-EEECC--C-
T ss_pred HHhCCcEEEEchHHHHHHHHHHHcCCCcEEeCHH-HHHHHhccCCCCEEEEECCC----C-EEE--ECCc-eEEEe--C-
Confidence 5789999999999999999999999999999742 466661 1345669999863 3 343 2556 66654 6
Q ss_pred CHHHHHHHHhC
Q psy7216 81 TEVDILYYKHG 91 (102)
Q Consensus 81 ~~~e~~ii~aG 91 (102)
+++.++++.+|
T Consensus 177 ~~~~k~~l~~G 187 (213)
T 2hcu_A 177 DGEWKHKLLNG 187 (213)
T ss_dssp CHHHHHHHHTT
T ss_pred CHHHHHHHHcC
Confidence 99999999998
No 7
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=99.72 E-value=3.7e-18 Score=142.15 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=68.2
Q ss_pred cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeE-EEEEecCC
Q psy7216 2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRK-FSVILRFD 80 (102)
Q Consensus 2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~-~~~~~~~~ 80 (102)
+.+| ++|||+|||||||+||+|+|+||++++ .+.+. .++.++||+.+ |. | .+.++|++ +++.+ .
T Consensus 267 k~~G-~~VIA~SFA~IF~~N~~n~Gllpi~~~----v~~l~--~Gd~i~Idl~~----g~-I-~~~~~g~~~~~f~~--~ 331 (865)
T 1l5j_A 267 KRGG-GLCLGGKIAPIFFNTMEDAGALPIEVD----VSNLN--MGDVIDVYPYK----GE-V-RNHETGELLATFEL--K 331 (865)
T ss_dssp EEEC-CEEEEEEECHHHHHHHHHTTCEEEECC----CTTCC--TTCEEEEETTT----TE-E-EETTTCCEEEECCC--S
T ss_pred hhcC-CeEEechHHHHHHHHHHHcCCceEEec----HhhcC--CCCEEEEECCC----CE-E-EEcCCCeEEEEEEe--C
Confidence 5679 999999999999999999999999985 44554 34569999863 42 3 23356766 77653 4
Q ss_pred CHHHHHHHHhCChHHHHHHhhC
Q psy7216 81 TEVDILYYKHGGILNYMIRKML 102 (102)
Q Consensus 81 ~~~e~~ii~aGGll~~~~~~~~ 102 (102)
+++.+++++|||+++|+++|.|
T Consensus 332 p~~~~~~v~AGGli~~i~~r~l 353 (865)
T 1l5j_A 332 TDVLIDEVRAGGRIPLIIGRGL 353 (865)
T ss_dssp CTHHHHHHHHTSHHHHHHHHHH
T ss_pred CHHHHHHHHcCChhhhhhcchH
Confidence 9999999999999999998753
No 8
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=99.71 E-value=2.6e-18 Score=123.29 Aligned_cols=79 Identities=16% Similarity=0.331 Sum_probs=61.1
Q ss_pred CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhc----cCCCeEEEEecCCCCCCCceEEEEecCCeEEEEE
Q psy7216 1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLK----LTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVI 76 (102)
Q Consensus 1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~----~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~ 76 (102)
++.+||+||||+|||||||+||+|+|+||+++++. ..+.+. .+.++.++||+++ + +|+ ++|+++++.
T Consensus 95 l~~~Gi~aVIA~SFa~IF~~N~~n~Gll~i~~~~~-~~~~l~~~~~~~~g~~i~VDL~~----~-~i~---~~g~~~~f~ 165 (203)
T 3q3w_A 95 LVDYGIRAIIAPSFADIFKNNALGNGLLTIELAKD-EVLEIVDELKKSQDKNIEISLLE----K-RVF---FKDKIFSFD 165 (203)
T ss_dssp HHHHTCCEEEESCBCHHHHHHHHHTTCEEEECCHH-HHHHHHHHHHHCSCCEEEEETTT----T-EEE---ETTEEEECC
T ss_pred HHHcCceEEEECcHHHHHHHHHHhCCCCeEEeCHH-HHHHHHHHhhcCCCCEEEEECCC----C-EEE---ECCEEEEEE
Confidence 35789999999999999999999999999999752 344441 1345669999863 3 342 367777765
Q ss_pred ecCCCHHHHHHHHhC
Q psy7216 77 LRFDTEVDILYYKHG 91 (102)
Q Consensus 77 ~~~~~~~e~~ii~aG 91 (102)
+ +++.++.+.+|
T Consensus 166 --i-~~~~r~~Ll~G 177 (203)
T 3q3w_A 166 --L-DDFHRICLLEG 177 (203)
T ss_dssp --C-CHHHHHHHHHT
T ss_pred --e-CHHHHHHHHcC
Confidence 5 89999999987
No 9
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=99.67 E-value=2.2e-17 Score=115.72 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=59.6
Q ss_pred cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhh----ccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEe
Q psy7216 2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSL----KLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVIL 77 (102)
Q Consensus 2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~----~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~ 77 (102)
+.+|++||||+||||||++|++|+|+||+++++. ..+.+ ..+.++.++||+++ + +|+ .+|+++++.
T Consensus 88 ~~~Gi~~VIA~Sfa~If~~N~~n~Gllpi~~~~~-~~~~l~~~~~~~~g~~i~VDl~~----~-~i~---~~g~~~~F~- 157 (171)
T 3h5j_A 88 MDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQD-DVELLWKLIEQSPGLEITANLQD----R-IIT---AATVVLPFK- 157 (171)
T ss_dssp HHHTCCEEEESSBCHHHHHHHHHHTCEEEECCHH-HHHHHHHHHHHSTTCEEEEETTT----T-EEE---ETTEEEECB-
T ss_pred HHhCCcEEEECcHHHHHHhHHHHcCCceEEeCHH-HHHHHHHHhhcCCCcEEEEECCC----C-EEE---ECCEEEEEE-
Confidence 5789999999999999999999999999999742 35554 11345669999863 3 332 367777664
Q ss_pred cCCCHHHHHHHHhC
Q psy7216 78 RFDTEVDILYYKHG 91 (102)
Q Consensus 78 ~~~~~~e~~ii~aG 91 (102)
+ +++.++.+.+|
T Consensus 158 -i-~~~~k~~ll~G 169 (171)
T 3h5j_A 158 -I-DDHSAWRLLEG 169 (171)
T ss_dssp -C-CHHHHHHHHHT
T ss_pred -E-CHHHHHHHHhC
Confidence 5 89999988876
No 10
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=31.35 E-value=20 Score=27.54 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=25.5
Q ss_pred eeEEEecc----hhhhhhhccccCccceEEeCC
Q psy7216 6 VKAVIAES----YERIHRSNLVGMGIAPLQFLP 34 (102)
Q Consensus 6 v~aVIA~S----FarI~~~N~in~Gilpl~~~~ 34 (102)
++|.+|++ +.++|++|.+.+.|-++++.+
T Consensus 159 VKafia~~~~~~~dk~~Kr~sV~L~Irklq~aP 191 (380)
T 3ugu_A 159 IKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAP 191 (380)
T ss_dssp EEEEEEBCCSSSSSBCCGGGEEEEEEEEEEBCC
T ss_pred EEEEEccCcccccccccccceEEEeeeecccCC
Confidence 67999996 789999999999999998853
No 11
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=24.64 E-value=90 Score=18.88 Aligned_cols=8 Identities=13% Similarity=0.841 Sum_probs=5.0
Q ss_pred hHHHHHHh
Q psy7216 93 ILNYMIRK 100 (102)
Q Consensus 93 ll~~~~~~ 100 (102)
++.|++++
T Consensus 36 lmdyikkq 43 (106)
T 1qys_A 36 LMDYIKKQ 43 (106)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 56676664
No 12
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=22.23 E-value=8.7 Score=22.79 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=23.4
Q ss_pred ccCeeEEEecchhhhhhhccccCccce
Q psy7216 3 FQGVKAVIAESYERIHRSNLVGMGIAP 29 (102)
Q Consensus 3 ~lGv~aVIA~SFarI~~~N~in~Gilp 29 (102)
.+||..-.|..||..|.+|-+..-+||
T Consensus 11 ~aGv~~~~c~rYA~~F~~~ri~e~mL~ 37 (72)
T 3idw_A 11 NCGVDVSNCQRYTINFDREQLTEDMMP 37 (72)
T ss_dssp HTTCCHHHHHHHHHHHHHTTCCGGGGG
T ss_pred HcCCChHHHHHHHHHHHHccCCHHHHh
Confidence 368888889999999999999888887
Done!