RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7216
(102 letters)
>gnl|CDD|240263 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional.
Length = 898
Score = 169 bits (430), Expect = 2e-50
Identities = 65/100 (65%), Positives = 81/100 (81%), Gaps = 1/100 (1%)
Query: 4 QGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIP-DDAKPHQK 62
QGVKAVIAES+ERIHRSNLVGMGI PLQFL GENADSL LTGKE+++I + + KP Q
Sbjct: 797 QGVKAVIAESFERIHRSNLVGMGILPLQFLNGENADSLGLTGKEQFSIDLNSGELKPGQD 856
Query: 63 LQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
+ V+ D G+ F ILR DTEV++ Y+KHGGIL Y++RK++
Sbjct: 857 VTVKTDTGKTFDTILRIDTEVEVEYFKHGGILQYVLRKLV 896
>gnl|CDD|236445 PRK09277, PRK09277, aconitate hydratase; Validated.
Length = 888
Score = 162 bits (414), Expect = 4e-48
Identities = 54/102 (52%), Positives = 70/102 (68%), Gaps = 4/102 (3%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
GVKAVIAES+ERIHRSNLVGMG+ PLQF PGE+ +L L G E + I +D KP +
Sbjct: 785 GVKAVIAESFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTETFDIEGLEDLKPGATVT 844
Query: 65 VEV--DDGRK--FSVILRFDTEVDILYYKHGGILNYMIRKML 102
V + DG F V+ R DT V++ YY++GGIL Y++R +L
Sbjct: 845 VVITRADGEVVEFPVLCRIDTAVEVDYYRNGGILQYVLRDLL 886
>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase.
Length = 936
Score = 150 bits (381), Expect = 8e-44
Identities = 61/104 (58%), Positives = 78/104 (75%), Gaps = 3/104 (2%)
Query: 2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDA---K 58
+ GVKAVIA+S+ERIHRSNLVGMGI PL F GE+AD+L LTG ERYTI +P + K
Sbjct: 831 MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISEIK 890
Query: 59 PHQKLQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
P Q + V D+G+ F+ LRFDTEV++ Y+ HGGIL Y+IR ++
Sbjct: 891 PGQDVTVTTDNGKSFTCTLRFDTEVELAYFDHGGILPYVIRNLI 934
>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion].
Length = 861
Score = 138 bits (349), Expect = 2e-39
Identities = 55/105 (52%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQ 61
GVKAVIAES+ERIHRSNL+GMG+ PLQF GE D L L G+E I ++ KP
Sbjct: 756 RLLGVKAVIAESFERIHRSNLIGMGVLPLQFPNGETYDKLGLDGEETIDIGGLENLKPGA 815
Query: 62 KLQVEV--DDGRK--FSVILRFDTEVDILYYKHGGILNYMIRKML 102
+ V V DG F V+ R DT +I YYK GGILNY+ R +L
Sbjct: 816 TVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAGGILNYVKRDLL 860
>gnl|CDD|237246 PRK12881, acnA, aconitate hydratase; Provisional.
Length = 889
Score = 131 bits (331), Expect = 5e-37
Identities = 53/103 (51%), Positives = 72/103 (69%), Gaps = 5/103 (4%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIR-IPDDAKPHQKL 63
GVKAVIAES+ERIHRSNLVGMG+ PLQF G++ SL LTG E + I +P + KP Q +
Sbjct: 786 GVKAVIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGGETFDIEGLPGEIKPRQDV 845
Query: 64 QVEV--DDGR--KFSVILRFDTEVDILYYKHGGILNYMIRKML 102
+ + DG + V+ R DT +++ YYK GGIL Y++R++L
Sbjct: 846 TLVIHRADGSTERVPVLCRIDTPIEVDYYKAGGILPYVLRQLL 888
>gnl|CDD|233363 TIGR01341, aconitase_1, aconitate hydratase 1. This model
represents one form of the TCA cycle enzyme aconitate
hydratase, also known as aconitase and citrate
hydro-lyase. It is found in bacteria, archaea, and
eukaryotic cytosol. It has been shown to act also as an
iron-responsive element binding protein in animals and
may have the same role in other eukaryotes [Energy
metabolism, TCA cycle].
Length = 876
Score = 127 bits (322), Expect = 8e-36
Identities = 57/102 (55%), Positives = 72/102 (70%), Gaps = 4/102 (3%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
GVKAVIAES+ERIHRSNLVGMG+ PLQF GE+A++L LTG E I D KP +++
Sbjct: 775 GVKAVIAESFERIHRSNLVGMGVIPLQFPQGEDAETLGLTGDETIDIDGIKDLKPGKEVT 834
Query: 65 VEVDDGR----KFSVILRFDTEVDILYYKHGGILNYMIRKML 102
V + + F +LR DTEV++ YYKHGGIL Y++RK L
Sbjct: 835 VTFTNSKGEKITFKCVLRIDTEVELDYYKHGGILQYVLRKFL 876
>gnl|CDD|238812 cd01580, AcnA_IRP_Swivel, Aconitase A swivel domain. This is the
major form of the TCA cycle enzyme aconitate hydratase,
also known as aconitase and citrate hydro-lyase. It
includes bacterial and archaeal aconitase A, and the
eukaryotic cytosolic form of aconitase. This group also
includes sequences that have been shown to act as an
iron-responsive element (IRE) binding protein in animals
and may have the same role in other eukaryotes. This is
the aconitase-like swivel domain, which is believed to
undergo swivelling conformational change in the enzyme
mechanism.
Length = 171
Score = 103 bits (258), Expect = 2e-29
Identities = 40/48 (83%), Positives = 42/48 (87%)
Query: 4 QGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTI 51
GVKAVIAES+ERIHRSNLVGMGI PLQF PGENADSL LTG+E Y I
Sbjct: 122 LGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLGLTGEETYDI 169
>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase,
Fe/S-dependent. Members of this family appear in an
operon for the degradation of propionyl-CoA via
2-methylcitrate. This family is homologous to aconitases
A and B and appears to act the part as
2-methylisocitrate dehydratase, the enzyme after PrpD
and before PrpB. In Escherichia coli, which lacks a
member of this family, 2-methylisocitrate dehydratase
activity was traced to aconitase B (TIGR00117)
(PMID:12473114).
Length = 858
Score = 76.6 bits (188), Expect = 9e-18
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
GV+A++AE +ERIHR+NLVGMG+ PL+F PG N +L L G E + + + L
Sbjct: 758 GVEAIVAEGFERIHRTNLVGMGVLPLEFKPGTNRHTLGLDGTETFDVVGEITPRADLTLV 817
Query: 65 VEVDDGRKFSVIL--RFDTEVDILYYKHGGIL 94
V +G K V + R DT ++ Y+ GG+L
Sbjct: 818 VTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVL 849
>gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated.
Length = 646
Score = 63.2 bits (155), Expect = 4e-13
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPD--DAKP 59
+ GVKAV+A+S+ RIH++NL+ GI PL F + D + +E + I D + P
Sbjct: 547 RYLGVKAVLAKSFARIHKANLINFGILPLTFADPADYDKI----EEGDVLEIEDLREFLP 602
Query: 60 HQKLQVE-VDDGRKFSVILRF-DTEVDILYYKHGGILNYMIRKML 102
L V V + V + +++IL GG LN I+K L
Sbjct: 603 GGPLTVVNVTKDEEIEVRHTLSERQIEIL--LAGGALNL-IKKKL 644
>gnl|CDD|201399 pfam00694, Aconitase_C, Aconitase C-terminal domain. Members of
this family usually also match to pfam00330. This domain
undergoes conformational change in the enzyme mechanism.
Length = 131
Score = 57.3 bits (139), Expect = 5e-12
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPG 35
G+KAVIA+S+ RIHR+NL+ G+ PL+F G
Sbjct: 98 RDLGIKAVIAKSFARIHRNNLIKNGLLPLEFPNG 131
>gnl|CDD|238236 cd00404, Aconitase_swivel, Aconitase swivel domain. Aconitase
(aconitate hydratase) catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. This is the aconitase swivel domain, which
undergoes swivelling conformational change in the
enzyme mechanism. The aconitase family contains the
following proteins: - Iron-responsive element binding
protein (IRE-BP). IRE-BP is a cytosolic protein that
binds to iron-responsive elements (IREs). IREs are
stem-loop structures found in the 5'UTR of ferritin,
and delta aminolevulinic acid synthase mRNAs, and in
the 3'UTR of transferrin receptor mRNA. IRE-BP also
express aconitase activity. - 3-isopropylmalate
dehydratase (isopropylmalate isomerase), the enzyme
that catalyzes the second step in the biosynthesis of
leucine. - Homoaconitase (homoaconitate hydratase), an
enzyme that participates in the alpha-aminoadipate
pathway of lysine biosynthesis and that converts
cis-homoaconitate into homoisocitric acid.
Length = 88
Score = 54.4 bits (131), Expect = 3e-11
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTI 51
G +AVIA+S+ RI NLV G+ PL+F E+ LKL + I
Sbjct: 39 RLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDY--LKLHTGDELDI 86
>gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex
type. This model represents a small family of proteins
homologous (and likely functionally equivalent to)
aconitase 1. Members are found, so far in the anaerobe
Clostridium acetobutylicum, in the microaerophilic,
early-branching bacterium Aquifex aeolicus, and in the
halophilic archaeon Halobacterium sp. NRC-1. No member
is experimentally characterized [Energy metabolism, TCA
cycle].
Length = 658
Score = 54.2 bits (130), Expect = 6e-10
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDD----- 56
+F GV+AVIA+S+ RIH +NL GI PL+F E+ +L G + I IPDD
Sbjct: 553 MFLGVEAVIAKSFARIHHANLFNFGILPLEFDNEEDYAKFEL-GDD---IEIPDDLAAAL 608
Query: 57 AKPHQKLQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRK 100
A + + +D + L +E + GG LN + K
Sbjct: 609 ADGEDEFTINKNDDEEALATLDA-SEREKEILAAGGKLNLIKNK 651
>gnl|CDD|238811 cd01579, AcnA_Bact_Swivel, Bacterial Aconitase-like swivel domain.
Aconitase (aconitate hydratase or citrate hydrolyase)
catalyzes the reversible isomerization of citrate and
isocitrate as part of the TCA cycle. Cis-aconitate is
formed as an intermediate product during the course of
the reaction. This is the aconitase-like swivel domain,
which is believed to undergo swivelling conformational
change in the enzyme mechanism. This distinct subfamily
is found only in bacteria and archea. Its exact
characteristics are not known.
Length = 121
Score = 47.8 bits (114), Expect = 2e-08
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQF 32
++ GV+AV+A+S+ RIHR+NL+ GI PL F
Sbjct: 72 MYLGVRAVLAKSFARIHRANLINFGILPLTF 102
>gnl|CDD|233362 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial.
This model represents mitochondrial forms of the TCA
cycle enzyme aconitate hydratase, also known as
aconitase and citrate hydro-lyase [Energy metabolism,
TCA cycle].
Length = 745
Score = 42.2 bits (99), Expect = 1e-05
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 3 FQGVKAVIAESYERIHRSNLVGMGIAPLQFL---------PGENADSLKLTGKERYTIRI 53
G + +I +S+ RIH +NL G+ PL F PG+ +L L +
Sbjct: 647 HLGGRIIITKSFARIHETNLKKQGVLPLTFANEADYDKIQPGDEVATLNLYEMLKNGGGG 706
Query: 54 PDDAKPHQKLQVEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
D + +K +G+ F + L+ ++ I ++K G LN M
Sbjct: 707 EVDLRVTKK------NGKVFEIKLKHTVSKDQIGFFKAGSALNLM 745
>gnl|CDD|238809 cd01577, IPMI_Swivel, Aconatase-like swivel domain of
3-isopropylmalate dehydratase and related
uncharacterized proteins. 3-isopropylmalate dehydratase
catalyzes the isomerization between 2-isopropylmalate
and 3-isopropylmalate, via the formation of
2-isopropylmaleate 3-isopropylmalate. IPMI is involved
in fungal and bacterial leucine biosynthesis and is
also found in eukaryotes. This is the aconitase-like
swivel domain, which is believed to undergo swivelling
conformational change in the enzyme mechanism.
Length = 91
Score = 36.8 bits (86), Expect = 2e-04
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKE 47
G++AVIAES+ RI N + G+ P+ + + G E
Sbjct: 44 GIRAVIAESFARIFFRNAINNGLLPVTLADEDVEEVEAKPGDE 86
>gnl|CDD|184460 PRK14023, PRK14023, homoaconitate hydratase small subunit;
Provisional.
Length = 166
Score = 36.3 bits (84), Expect = 7e-04
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQ 31
G+ A+IA+SY RI NLV +GI P +
Sbjct: 76 GIGAIIAKSYARIFYRNLVNLGIPPFE 102
>gnl|CDD|238810 cd01578, AcnA_Mitochon_Swivel, Mitochondrial aconitase A swivel
domain. Aconitase (also known as aconitate hydratase and
citrate hydro-lyase) catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. This is the aconitase swivel domain, which
undergoes swivelling conformational change in the enzyme
mechanism. In eukaryotes two isozymes of aconitase are
known to exist: one found in the mitochondrial matrix
and the other found in the cytoplasm. This is the
mitochondrial form. The mitochondrial product is coded
by a nuclear gene. Most members of this subfamily are
mitochondrial but there are some bacterial members.
Length = 149
Score = 35.9 bits (83), Expect = 8e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 3 FQGVKAVIAESYERIHRSNLVGMGIAPLQF 32
G +A+I +S+ RIH +NL G+ PL F
Sbjct: 94 HLGGRAIITKSFARIHETNLKKQGLLPLTF 123
>gnl|CDD|223144 COG0066, LeuD, 3-isopropylmalate dehydratase small subunit [Amino
acid transport and metabolism].
Length = 191
Score = 35.6 bits (83), Expect = 0.001
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGK-------ERYTIRIPDDA 57
G++AVIA S+ I N + G+ P+ + + + E + P
Sbjct: 89 GIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVTELFEDVPGDEVTVDLETGEVTNPTG- 147
Query: 58 KPHQKLQVEVDDGRK 72
+ E+DD R+
Sbjct: 148 ---GEEPFEIDDFRR 159
>gnl|CDD|179314 PRK01641, leuD, isopropylmalate isomerase small subunit;
Provisional.
Length = 200
Score = 33.2 bits (77), Expect = 0.010
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 17/79 (21%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSL-KLTGK----------ERYTIRI 53
G +AVIA S+ I +N G+ P+ LP E+ D L KL E T+
Sbjct: 94 GFRAVIAPSFADIFYNNCFKNGLLPIV-LPEEDVDELFKLVEANPGAELTVDLEAQTVTA 152
Query: 54 PDDAKPHQKLQVEVDDGRK 72
PD P E+D R+
Sbjct: 153 PDKTFP-----FEIDPFRR 166
>gnl|CDD|234762 PRK00439, leuD, 3-isopropylmalate dehydratase small subunit;
Reviewed.
Length = 163
Score = 32.9 bits (76), Expect = 0.013
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 5 GVKAVIAESYERIHRSNLVGMGI 27
GV AVIA+S+ RI N + +G+
Sbjct: 75 GVSAVIAKSFARIFYRNAINIGL 97
>gnl|CDD|177701 PLN00072, PLN00072, 3-isopropylmalate isomerase/dehydratase small
subunit; Provisional.
Length = 246
Score = 31.8 bits (72), Expect = 0.037
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 5 GVKAVIAESYERIHRSNLVGMG-IAPLQ 31
G KAV+AESY RI N V G + PL+
Sbjct: 156 GAKAVVAESYARIFFRNSVATGEVYPLE 183
>gnl|CDD|233716 TIGR02087, LEUD_arch, 3-isopropylmalate dehydratase, small subunit.
This subfamily is most closely related to the
3-isopropylmalate dehydratase, small subunits which form
TIGR00171. This subfamily includes the members of
TIGR02084 which are gene clustered with other genes of
leucine biosynthesis. The rest of the subfamily includes
mainly archaeal species which exhibit two hits to this
model. In these cases it is possible that one or the
other of the hits does not have a 3-isopropylmalate
dehydratase activity but rather one of the other related
aconitase-like activities.
Length = 154
Score = 29.7 bits (67), Expect = 0.17
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGE 36
G+ AVIAES+ RI N + +G+ PL E
Sbjct: 74 GIAAVIAESFARIFYRNAINIGL-PLIEAKTE 104
>gnl|CDD|217275 pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, N-terminal
beta-propeller domain. This unusual 7-stranded
beta-propeller domain protects the catalytic triad of
prolyl oligopeptidase (see pfam00326), excluding larger
peptides and proteins from proteolysis in the cytosol.
Length = 412
Score = 29.2 bits (66), Expect = 0.29
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 38 ADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVI 76
A SL L+G + YTIR D + +V +G KFS I
Sbjct: 140 AYSLSLSGSDWYTIRFRDVET--GEPLPDVLEGVKFSGI 176
>gnl|CDD|191399 pfam05907, DUF866, Eukaryotic protein of unknown function (DUF866).
This family consists of a number of hypothetical
eukaryotic proteins of unknown function with an average
length of around 165 residues.
Length = 161
Score = 26.6 bits (59), Expect = 1.8
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 42 KLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFD 80
KL +E I P+ +D KF I+ FD
Sbjct: 68 KLCSRENSIDIIDGSGSPY-----TAEDSGKFKTIVVFD 101
>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase. Sorbitol and aldose
reductase are NAD(+) binding proteins of the polyol
pathway, which interconverts glucose and fructose.
Sorbitol dehydrogenase is tetrameric and has a single
catalytic zinc per subunit. Aldose reductase catalyzes
the NADP(H)-dependent conversion of glucose to sorbital,
and SDH uses NAD(H) in the conversion of sorbitol to
fructose. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Length = 343
Score = 26.7 bits (60), Expect = 2.0
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 84 DILYYKHGGILNYMIRK 100
D+ YYKHG I ++++++
Sbjct: 38 DVHYYKHGRIGDFVVKE 54
>gnl|CDD|219896 pfam08547, CIA30, Complex I intermediate-associated protein 30
(CIA30). This protein is associated with mitochondrial
Complex I intermediate-associated protein 30 (CIA30) in
human and mouse. The family is also present in
Schizosaccharomyces pombe which does not contain the
NADH dehydrogenase component of complex I, or many of
the other essential subunits. This means it is possible
that this family of protein may not be directly
involved in oxidative phosphorylation.
Length = 156
Score = 26.4 bits (59), Expect = 2.3
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 56 DAKPHQKLQVEVD-DGRKFSVILRFDTEVDILYYKH 90
D + L++ V DGR + L+ + E D L Y+
Sbjct: 63 DLSGYTGLELRVKGDGRTYKFNLKTEDEFDGLSYQA 98
>gnl|CDD|235158 PRK03761, PRK03761, LPS assembly outer membrane complex protein
LptD; Provisional.
Length = 778
Score = 26.8 bits (60), Expect = 2.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 37 NADSLKLTGKERYTI 51
AD +K G+ RYTI
Sbjct: 149 KADLMKQRGQNRYTI 163
>gnl|CDD|221850 pfam12915, DUF3833, Protein of unknown function (DUF3833). This is
a family of uncharacterized proteins found in
Proteobacteria.
Length = 165
Score = 25.9 bits (58), Expect = 3.1
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 48 RYTIRIPDDAKPHQKLQVEVDD 69
RYT+ +P D + V DD
Sbjct: 115 RYTLDLPVDGGTY---VVNFDD 133
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional.
Length = 310
Score = 26.2 bits (57), Expect = 3.9
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 27 IAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFDTEVD 84
IA FLP ENA+++++ E P H K+ + G +++ +L + + VD
Sbjct: 120 IAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKIN-QALGGHRYATVLMYLSTVD 176
>gnl|CDD|173273 PRK14812, PRK14812, hypothetical protein; Provisional.
Length = 119
Score = 25.5 bits (55), Expect = 4.3
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
G K VIA S+ IH +N + G+ P+ P E + L KP ++
Sbjct: 17 GFKVVIAGSFGDIHYNNELNNGMLPI-VQPREVREKLA-------------QLKPTDQVT 62
Query: 65 VEVDDGRKFSVILRFDTEVD 84
V+++ + S + F E+D
Sbjct: 63 VDLEQQKIISPVEEFTFEID 82
>gnl|CDD|107388 cd06393, PBP1_iGluR_Kainate_GluR5_7, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the GluR5-7 subunits of Kainate receptor.
N-terminal leucine/isoleucine/valine-binding protein
(LIVBP)-like domain of the GluR5-7 subunits of Kainate
receptor. While this N-terminal domain belongs to the
periplasmic-binding fold type I superfamily, the
glutamate-binding domain of the iGluR is structurally
homologous to the periplasmic-binding fold type II. The
LIVBP-like domain of iGluRs is thought to play a role in
the initial assembly of iGluR subunits, but it is not
well understood how this domain is arranged and
functions in intact iGluR. There are five types of
kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2,
which are structurally similar to AMPA and NMDA subunits
of ionotropic glutamate receptors. KA1 and KA2 subunits
can only form functional receptors with one of the
GluR5-7 subunits. Moreover, GluR5-7 can also form
functional homomeric receptor channels activated by
kainate and glutamate when expressed in heterologous
systems. Kainate receptors are involved in excitatory
neurotransmission by activating postsynaptic receptors
and in inhibitory neurotransmission by modulating
release of the inhibitory neurotransmitter GABA through
a presynaptic mechanism. Kainate receptors are closely
related to AMAP receptors. In contrast of AMPA
receptors, kainate receptors play only a minor role in
signaling at synapses and their function is not well
defined.
Length = 384
Score = 25.8 bits (56), Expect = 5.2
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 48 RYTIRI-----PDDAKPHQKLQVEVDDGRKFSVIL--RFDTEVDIL 86
RY IR+ P D+ + L E+ GR+F +I IL
Sbjct: 164 RYNIRLKIRQLPTDSDDARPLLKEMKRGREFRIIFDCSHQMAAQIL 209
>gnl|CDD|185269 PRK15371, PRK15371, effector protein YopJ; Provisional.
Length = 287
Score = 25.4 bits (56), Expect = 6.2
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 11 AESYERIHRSNLVGMGIAPLQFLPGENADSL 41
+ ++H N+ G+ LP + D
Sbjct: 187 RDKLLKLHEDNIKGILCDGENPLPHDKLDPY 217
>gnl|CDD|183640 PRK12636, flgG, flagellar basal body rod protein FlgG; Provisional.
Length = 263
Score = 25.5 bits (56), Expect = 6.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 37 NADSLKLTGKERYTIRIPDDAK 58
NAD L L G I+IP DA+
Sbjct: 128 NADGLYLLGMNGGRIQIPTDAQ 149
>gnl|CDD|234497 TIGR04199, exosort_xrtJ, exosortase J. Exosortase J occurs as a
three-member paralogous family in Acidobacterium sp.
MP5ACTX8. It contains an N-terminal
exosortase/archaeosortase domain and a novel C-terminal
domain comprising about half of total protein length.
The presumptive target, found as an adjacent gene for
two of the three paralogs, consists of a possible
lipoprotein signal peptide followed almost immediately
by a C-terminal region with some PEP-CTERM-like
characteristics.
Length = 522
Score = 24.8 bits (54), Expect = 9.8
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 57 AKPHQKLQVEVDDGRKFSVILRFDT 81
+ P + + V R V+LR DT
Sbjct: 463 SAPGVRDLLFVSSTRPLPVLLRGDT 487
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.142 0.408
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,330,015
Number of extensions: 453254
Number of successful extensions: 365
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 43
Length of query: 102
Length of database: 10,937,602
Length adjustment: 68
Effective length of query: 34
Effective length of database: 7,921,530
Effective search space: 269332020
Effective search space used: 269332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.0 bits)