RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7216
(102 letters)
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase
activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1
c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Length = 888
Score = 188 bits (480), Expect = 2e-57
Identities = 65/99 (65%), Positives = 85/99 (85%)
Query: 4 QGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKL 63
G+KAV+AESYERIHRSNLVGMG+ PL++LPGENAD+L LTG+ERYTI IP++ KP K+
Sbjct: 789 LGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKV 848
Query: 64 QVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
QV++D G+ F ++RFDT+V++ Y+ +GGILNYMIRKM
Sbjct: 849 QVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKMA 887
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1
c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A*
5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A*
1nis_A* 1nit_A
Length = 753
Score = 112 bits (282), Expect = 1e-30
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 3 FQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQK 62
G +A+I +S+ RIH +NL G+ PL F + + K+ ++ TI+ D P +
Sbjct: 652 HLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYN--KIHPVDKLTIQGLKDFAPGKP 709
Query: 63 LQVEV--DDGRKFSVIL-RFDTEVDILYYKHGGILNYM 97
L+ + +G + +++L E I +++ G LN M
Sbjct: 710 LKCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 747
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis,
leucine biosynthesis, structural genomics, NPPSFA; 2.10A
{Methanocaldococcus jannaschii}
Length = 170
Score = 45.0 bits (107), Expect = 3e-07
Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPH 60
+ + G+KAVIA+S+ RI N + +G+ P+ A++ ++ + I +
Sbjct: 74 IKYCGIKAVIAKSFARIFYRNAINVGLIPII------ANTDEIKDGDIVEIDLDK----- 122
Query: 61 QKLQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
+++ + + + E +IL GG++NY+ ++ L
Sbjct: 123 EEIVIT-NKNKTIKCETPKGLEREIL--AAGGLVNYLKKRKL 161
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase;
1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Length = 163
Score = 40.3 bits (95), Expect = 1e-05
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 1 MLFQGVKAVIAESYERIHRSNLVGMGIAPL 30
+ G+ VIAES+ RI N + +GI L
Sbjct: 74 LKALGIAGVIAESFGRIFYRNAINIGIPLL 103
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase;
2.10A {Streptococcus mutans}
Length = 213
Score = 29.5 bits (67), Expect = 0.13
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSL-KLTGKERYTIRIPDD--AKPHQ 61
G K ++A S+ IH +N + GI P+ P E D L KL + T+ + + P
Sbjct: 112 GFKVIVAGSFGDIHYNNDLNNGILPII-QPKEVRDKLAKLKPTDEVTVNLFEQKIYSPVG 170
Query: 62 KLQVEVDDGRK 72
++D K
Sbjct: 171 DFSFDIDGEWK 181
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis,
isopropylmalate isomerase, LEUD, amino-acid
biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB:
3h5h_A 3h5e_A
Length = 171
Score = 28.7 bits (65), Expect = 0.20
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 13/64 (20%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
G + VI+ + I R N G+ + + ++ + L + L+
Sbjct: 91 GFRVVISSRFGDIFRGNAGKAGLLAAE-VAQDDVELLW------------KLIEQSPGLE 137
Query: 65 VEVD 68
+ +
Sbjct: 138 ITAN 141
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics,
center for structural genomics of infec diseases, csgid,
isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Length = 203
Score = 28.2 bits (64), Expect = 0.35
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query: 5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
G++A+IA S+ I ++N +G G+ ++ L + + D+ K Q
Sbjct: 99 GIRAIIAPSFADIFKNNALGNGLLTIE-LAKDEVLEIV------------DELKKSQDKN 145
Query: 65 VEVD 68
+E+
Sbjct: 146 IEIS 149
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.36
Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 56/138 (40%)
Query: 8 AVIAESY-ERIHR------------SNLVGMGIAPLQFLPGENADSLKLTGKERY---TI 51
++IAES + + + ++ + L+ P E ++ + ++
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEY--------RKMFDRLSV 380
Query: 52 RIPDDAK-PHQKLQV------------EVDDGRKFSVI---------------LRFDTEV 83
P A P L + V+ K+S++ L ++
Sbjct: 381 -FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 84 DILYYKHGGILN-YMIRK 100
+ Y H I++ Y I K
Sbjct: 440 ENEYALHRSIVDHYNIPK 457
>2rfw_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycosidase; 1.60A
{Melanocarpus albomyces} PDB: 2rfy_A* 2rfz_A* 2rg0_A*
Length = 430
Score = 26.1 bits (57), Expect = 2.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 67 VDDGRKFSVILRFDTEVDILYYKHGG 92
+D RKF+V+ RF+ Y+ G
Sbjct: 280 LDTSRKFTVVSRFEENKLSQYFIQDG 305
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein,
iron-sulfur, electron transport; 1.90A {Haloarcula
marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Length = 128
Score = 25.5 bits (56), Expect = 2.8
Identities = 4/42 (9%), Positives = 14/42 (33%)
Query: 15 ERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDD 56
E ++ + G A + L ++ ++ + +
Sbjct: 4 EYLNYEVVDDNGWDMYDDDVFGEASDMDLDDEDYGSLEVNEG 45
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate
cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis}
PDB: 2c2y_A
Length = 281
Score = 24.8 bits (55), Expect = 5.4
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 6/35 (17%)
Query: 4 QGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENA 38
G V+ I R VG + L ENA
Sbjct: 157 AGAHVVV------IGRGVTVGRPLGLLLTRRSENA 185
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.142 0.408
Gapped
Lambda K H
0.267 0.0835 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,608,289
Number of extensions: 86728
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 16
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)