RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7216
         (102 letters)



>d2b3ya1 c.8.2.1 (A:631-889) ron-responsive element binding protein
           1, C-terminal domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 259

 Score =  109 bits (272), Expect = 2e-31
 Identities = 65/100 (65%), Positives = 85/100 (85%)

Query: 3   FQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQK 62
             G+KAV+AESYERIHRSNLVGMG+ PL++LPGENAD+L LTG+ERYTI IP++ KP  K
Sbjct: 159 LLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMK 218

Query: 63  LQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
           +QV++D G+ F  ++RFDT+V++ Y+ +GGILNYMIRKM 
Sbjct: 219 VQVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKMA 258


>d1acoa1 c.8.2.1 (A:529-754) Aconitase A, C-terminal domain {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 226

 Score = 76.3 bits (187), Expect = 4e-19
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 6/104 (5%)

Query: 1   MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPH 60
             F G +A+I +S+ RIH +NL   G+ PL F   + AD  K+   ++ TI+   D  P 
Sbjct: 123 PRFLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPG 180

Query: 61  QKLQVEV--DDGRKFSVIL-RFDTEVDILYYKHGGILNYMIRKM 101
           + L   +   +G + +++L     E  I +++ G  LN M +++
Sbjct: 181 KPLTCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM-KEL 223


>d1v7la_ c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 162

 Score = 50.7 bits (121), Expect = 7e-10
 Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 24/104 (23%)

Query: 1   MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPH 60
           +   G+  VIAES+ RI   N + +GI PL     E                     K  
Sbjct: 74  LKALGIAGVIAESFGRIFYRNAINIGI-PLLLGKTE-------------------GLKDG 113

Query: 61  QKLQVEVDDG--RKFSVILRFDT--EVDILYYKHGGILNYMIRK 100
             + V  + G  RK   IL F+   +  +   + GGIL Y+ R+
Sbjct: 114 DLVTVNWETGEVRKGDEILMFEPLEDFLLEIVREGGILEYIRRR 157


>d1g4ma1 b.1.18.11 (A:5-175) Arrestin {Cow (Bos taurus),
           beta-arrestin 1 [TaxId: 9913]}
          Length = 171

 Score = 28.9 bits (65), Expect = 0.063
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 6   VKAVIAESY-ERIHRSNLVGMGIAPLQFLP 34
           VKA  AE+  E+IH+ N V + I  +Q+ P
Sbjct: 142 VKAFCAENLEEKIHKRNSVRLVIRKVQYAP 171


>d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual
           arrestin [TaxId: 9913]}
          Length = 173

 Score = 28.1 bits (63), Expect = 0.12
 Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 6   VKAVIAESY----ERIHRSNLVGMGIAPLQFLP 34
           +KA    S     ++I + + V + I  +Q  P
Sbjct: 140 IKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAP 172


>d2v3ia1 b.29.1.10 (A:1-434) Cellobiohydrolase I (cellulase,
           Endoglucanase I, CBH1) {Trichoderma reesei, Cel7A
           [TaxId: 51453]}
          Length = 434

 Score = 24.4 bits (53), Expect = 3.2
 Identities = 5/23 (21%), Positives = 12/23 (52%), Gaps = 2/23 (8%)

Query: 67  VDDGRKFSVILRF--DTEVDILY 87
           +D  +K +V+ +F     ++  Y
Sbjct: 282 LDTTKKLTVVTQFETSGAINRYY 304


>d1o13a_ c.55.5.1 (A:) Hypothetical protein TM1816 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 107

 Score = 23.3 bits (50), Expect = 4.8
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 4   QGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLK--LTGK 46
           +G + VI     R   +    MG+  ++   G   + +   L+G+
Sbjct: 63  KGAELVIVRGIGRRAIAAFEAMGVKVIKGASGTVEEVVNQYLSGQ 107


>d1ffvb1 d.41.1.1 (B:7-146) Carbon monoxide (CO) dehydrogenase
          molybdoprotein, N-domain {Hydrogenophaga pseudoflava
          [TaxId: 47421]}
          Length = 140

 Score = 22.8 bits (48), Expect = 8.3
 Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 4/27 (14%)

Query: 39 DSLKLTGKERYTIRIPDDAKPHQKLQV 65
          D+  + GK  Y     DD K    L +
Sbjct: 21 DARFIQGKGNYV----DDIKMPGMLHM 43


>d1rdua_ c.55.5.1 (A:) Hypothetical protein TM1290 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 116

 Score = 22.6 bits (48), Expect = 9.1
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 4  QGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLK 42
          +GV+ +IA +  R     L   G+   +F  G   +++ 
Sbjct: 61 KGVEYLIASNVGRNAFETLKAAGVKVYRFEGGTVQEAID 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.142    0.408 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 386,874
Number of extensions: 16133
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 17
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)