BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7218
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OAS|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A
Transferase (Atoa) In Complex With Coa From Shewanella
Oneidensis, Northeast Structural Genomics Target Sor119.
pdb|2OAS|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A
Transferase (Atoa) In Complex With Coa From Shewanella
Oneidensis, Northeast Structural Genomics Target Sor119
Length = 436
Score = 79.7 bits (195), Expect = 4e-16, Method: Composition-based stats.
Identities = 38/53 (71%), Positives = 44/53 (83%)
Query: 33 GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFE 85
GAGVVTTRAHVHY+VTE+G A L G++LR+RA ALINIA PD RE L + AFE
Sbjct: 370 GAGVVTTRAHVHYIVTEYGAANLKGRSLRERAQALINIAHPDFREQLSRDAFE 422
>pdb|3EH7|A Chain A, The Structure Of A Putative 4-Hydroxybutyrate
Coa-Transferase From Porphyromonas Gingivalis W83
Length = 434
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/55 (61%), Positives = 37/55 (67%)
Query: 33 GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFERL 87
GA V T R V YVVTE+GIA L GK+LRQRA ALI IA PD RE L K +R
Sbjct: 379 GAAVTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIAIAHPDFREELTKHLRKRF 433
>pdb|3GK7|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3GK7|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3QDQ|A Chain A, Complex Between 4-Hydroxybutyrate Coa-Transferase From
Clostridium Aminobutyricum And Coa
Length = 448
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 33 GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFER 86
GA V T+R YVVTE+GIA + GK+L+ RA ALINIA PD ++ L KA FE+
Sbjct: 380 GAAVTTSRNDADYVVTEYGIAEMKGKSLQDRARALINIAHPDFKDEL-KAEFEK 432
>pdb|3D3U|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
(Abft-2) From Porphyromonas Gingivalis. Northeast
Structural Genomics Consortium Target Pgr26
Length = 439
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 37/57 (64%)
Query: 33 GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFERLKV 89
GA V T R V YVVTE+G+A L G TLRQRA AL IA PD R ALE+ R ++
Sbjct: 376 GACVTTGRNEVDYVVTEYGVARLRGATLRQRAEALTAIAHPDFRPALEEEIRRRFEL 432
>pdb|3S8D|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3S8D|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
Length = 455
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 36 VVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAA 83
V T R HY+VTE G L G + +RA +I +A PD R+ L +AA
Sbjct: 402 VTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIELAHPDFRDELTQAA 449
>pdb|3QLI|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLI|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLK|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis
pdb|3QLK|B Chain B, Crystal Structure Of Ripa From Yersinia Pestis
Length = 455
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 36 VVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAA 83
V T R HY+VTE G L G + +RA +I +A PD R+ L +AA
Sbjct: 402 VTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIELAHPDFRDELTQAA 449
>pdb|1ML6|A Chain A, Crystal Structure Of Mgsta2-2 In Complex With The
Glutathione Conjugate Of Benzo[a]pyrene-7(R),8(S)-Diol-
9(S),10(R)-Epoxide
pdb|1ML6|B Chain B, Crystal Structure Of Mgsta2-2 In Complex With The
Glutathione Conjugate Of Benzo[a]pyrene-7(R),8(S)-Diol-
9(S),10(R)-Epoxide
Length = 221
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 18/74 (24%)
Query: 30 QLLGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRA------HALINIA---------PPD 74
++ G +V TRA ++Y+ T++ L+GK +++RA ++++ PPD
Sbjct: 58 EIDGMKLVQTRAILNYIATKYD---LYGKDMKERALIDMYTEGILDLTEMIGQLVLXPPD 114
Query: 75 HREALEKAAFERLK 88
REA A +R K
Sbjct: 115 QREAKTALAKDRTK 128
>pdb|2NVV|A Chain A, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|B Chain B, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|C Chain C, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|D Chain D, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|E Chain E, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|F Chain F, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16
Length = 506
Score = 32.0 bits (71), Expect = 0.090, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 43 VHYVVTEHGIAFLFGKTLRQRAHALIN-IAPPDHREALEK 81
V +++E G+A L GK R+RAH +I+ PD+R L +
Sbjct: 419 VKVIISEWGVADLRGKNPRERAHEIIDKCVHPDYRPLLRQ 458
>pdb|1F3A|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Gsh
pdb|1F3A|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Gsh
Length = 222
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 18/77 (23%)
Query: 27 PDRQLLGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRA------HALINIA--------- 71
P ++ G + TRA ++Y+ T++ L+GK +++RA ++++
Sbjct: 55 PMVEIDGMKLAQTRAILNYIATKYD---LYGKDMKERALIDMYSEGILDLTEMIGQLVLC 111
Query: 72 PPDHREALEKAAFERLK 88
PPD REA A +R K
Sbjct: 112 PPDQREAKTALAKDRTK 128
>pdb|1F3B|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
pdb|1F3B|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
Length = 222
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 18/77 (23%)
Query: 27 PDRQLLGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRA------HALINIA--------- 71
P ++ G + TRA ++Y+ T++ L+GK +++RA ++++
Sbjct: 55 PMVEIDGMKLAQTRAILNYIATKYD---LYGKDMKERALIDMYSEGILDLTEMIGQLVLX 111
Query: 72 PPDHREALEKAAFERLK 88
PPD REA A +R K
Sbjct: 112 PPDQREAKTALAKDRTK 128
>pdb|1EV9|A Chain A, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
pdb|1EV9|C Chain C, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
pdb|1EV9|D Chain D, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
Length = 221
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 22/79 (27%)
Query: 27 PDRQLLGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALIN----------------- 69
P ++ G + TRA ++Y+ T++ L+GK +++RA LI+
Sbjct: 55 PMVEIDGMKLAQTRAILNYIATKYD---LYGKDMKERA--LIDMYSEGILDLTEMIMQLV 109
Query: 70 IAPPDHREALEKAAFERLK 88
I PPD +EA A +R K
Sbjct: 110 ICPPDQKEAKTALAKDRTK 128
>pdb|1EV4|A Chain A, Rat Glutathione S-transferase A1-1: Mutant W21f/f220y With
Gso3 Bound
pdb|1EV4|C Chain C, Rat Glutathione S-transferase A1-1: Mutant W21f/f220y With
Gso3 Bound
pdb|1EV4|D Chain D, Rat Glutathione S-transferase A1-1: Mutant W21f/f220y With
Gso3 Bound
Length = 221
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 22/79 (27%)
Query: 27 PDRQLLGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALIN----------------- 69
P ++ G + TRA ++Y+ T++ L+GK +++RA LI+
Sbjct: 55 PMVEIDGMKLAQTRAILNYIATKYD---LYGKDMKERA--LIDMYSEGILDLTEMIMQLV 109
Query: 70 IAPPDHREALEKAAFERLK 88
I PPD +EA A +R K
Sbjct: 110 ICPPDQKEAKTALAKDRTK 128
>pdb|1GUL|A Chain A, Human Glutathione Transferase A4-4 Complex With
Iodobenzyl Glutathione
pdb|1GUL|B Chain B, Human Glutathione Transferase A4-4 Complex With
Iodobenzyl Glutathione
pdb|1GUL|C Chain C, Human Glutathione Transferase A4-4 Complex With
Iodobenzyl Glutathione
pdb|1GUL|D Chain D, Human Glutathione Transferase A4-4 Complex With
Iodobenzyl Glutathione
pdb|1GUL|E Chain E, Human Glutathione Transferase A4-4 Complex With
Iodobenzyl Glutathione
pdb|1GUL|F Chain F, Human Glutathione Transferase A4-4 Complex With
Iodobenzyl Glutathione
pdb|1GUL|G Chain G, Human Glutathione Transferase A4-4 Complex With
Iodobenzyl Glutathione
pdb|1GUL|H Chain H, Human Glutathione Transferase A4-4 Complex With
Iodobenzyl Glutathione
pdb|1GUM|A Chain A, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|B Chain B, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|C Chain C, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|D Chain D, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|E Chain E, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|F Chain F, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|G Chain G, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|H Chain H, Human Glutathione Transferase A4-4 Without Ligands
pdb|3IK7|A Chain A, Human Glutathione Transferase A4-4 With Gsdhn
pdb|3IK7|B Chain B, Human Glutathione Transferase A4-4 With Gsdhn
pdb|3IK7|C Chain C, Human Glutathione Transferase A4-4 With Gsdhn
pdb|3IK7|D Chain D, Human Glutathione Transferase A4-4 With Gsdhn
Length = 222
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 27 PDRQLLGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRA 64
P ++ G +V TR+ +HY+ +H LFGK L++R
Sbjct: 56 PMVEIDGMKLVQTRSILHYIADKHN---LFGKNLKERT 90
>pdb|4EU9|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa And A Covalent Glutamyl-Coa Thioester
Adduct
pdb|4EU9|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa And A Covalent Glutamyl-Coa Thioester
Adduct
pdb|4EUA|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa (Anomalous Dataset)
pdb|4EUA|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-R228e) In
Complex With Coa (Anomalous Dataset)
Length = 514
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 34 AGVVTTRAHVHYV-------VTEHGIAFLFGKTLRQRAHALIN-IAPPDHREALE 80
+ +V AHV ++ VTE G+A L G + QRA +I+ A PD+R L+
Sbjct: 413 SAIVPMAAHVDHIMQDAQIFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQ 467
>pdb|4EU3|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Citrate (Subunit B) Or Unliganded (Subunit A)
pdb|4EU3|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Citrate (Subunit B) Or Unliganded (Subunit A)
pdb|4EU4|A Chain A, Succinyl-Coa: Acetate Coa-Transferase (Aarch6) In Complex
With Coa (Hexagonal Lattice)
pdb|4EU4|B Chain B, Succinyl-Coa: Acetate Coa-Transferase (Aarch6) In Complex
With Coa (Hexagonal Lattice)
pdb|4EU5|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa
pdb|4EU5|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa
pdb|4EU6|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa, Acetate, And Covalent Acetylglutamyl Anhydride
And Glutamyl-Coa Thioester Adducts
pdb|4EU6|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa, Acetate, And Covalent Acetylglutamyl Anhydride
And Glutamyl-Coa Thioester Adducts
pdb|4EU7|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa And Citrate
pdb|4EU7|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6) In Complex
With Coa And Citrate
Length = 514
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 34 AGVVTTRAHVHYV-------VTEHGIAFLFGKTLRQRAHALIN-IAPPDHREALE 80
+ +V AHV ++ VTE G+A L G + QRA +I+ A PD+R L+
Sbjct: 413 SAIVPMAAHVDHIMQDAQIFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQ 467
>pdb|4EUD|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarc) In Complex
With Coa And Citrate
pdb|4EUD|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarc) In Complex
With Coa And Citrate
Length = 505
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 34 AGVVTTRAHVHYV-------VTEHGIAFLFGKTLRQRAHALIN-IAPPDHREALE 80
+ +V AHV ++ VTE G+A L G + QRA +I+ A PD+R L+
Sbjct: 413 SAIVPMAAHVDHIMQDAQIFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQ 467
>pdb|4EUB|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Coa
pdb|4EUB|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Coa
pdb|4EUC|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Dethiaacetyl-Coa
pdb|4EUC|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-E294a) In
Complex With Dethiaacetyl-Coa
Length = 514
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 34 AGVVTTRAHVHYV-------VTEHGIAFLFGKTLRQRAHALIN-IAPPDHREALE 80
+ +V AHV ++ VTE G+A L G + QRA +I+ A PD+R L+
Sbjct: 413 SAIVPMAAHVDHIMQDAQIFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQ 467
>pdb|4EU8|A Chain A, Succinyl-Coa:acetate Coa-Transferase (Aarch6-S71a) In
Complex With Coa
pdb|4EU8|B Chain B, Succinyl-Coa:acetate Coa-Transferase (Aarch6-S71a) In
Complex With Coa
Length = 514
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 34 AGVVTTRAHVHYV-------VTEHGIAFLFGKTLRQRAHALIN-IAPPDHREALE 80
+ +V AHV ++ VTE G+A L G + QRA +I+ A PD+R L+
Sbjct: 413 SAIVPMAAHVDHIMQDAQIFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQ 467
>pdb|2G39|A Chain A, Crystal Structure Of Coenzyme A Transferase From
Pseudomonas Aeruginosa
pdb|2G39|B Chain B, Crystal Structure Of Coenzyme A Transferase From
Pseudomonas Aeruginosa
Length = 497
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 39 TRAHVHYVVTEHGIAFLFGKTLRQRAHALI-NIAPPDHREAL 79
T V +VTE G+A L G R+RA +I N P ++ L
Sbjct: 419 TEHDVDILVTEQGLADLRGLAPRERARVIIENCVHPSYQAPL 460
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,550,580
Number of Sequences: 62578
Number of extensions: 84894
Number of successful extensions: 211
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 19
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)