Query psy7218
Match_columns 93
No_of_seqs 105 out of 815
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 21:08:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13336 AcetylCoA_hyd_C: Acet 100.0 8.5E-33 1.8E-37 202.3 4.7 71 13-83 80-154 (154)
2 TIGR03458 YgfH_subfam succinat 100.0 1.8E-29 3.9E-34 208.8 7.1 75 12-86 383-459 (485)
3 COG0427 ACH1 Acetyl-CoA hydrol 100.0 1.5E-29 3.1E-34 211.4 6.1 79 11-89 392-471 (501)
4 KOG2828|consensus 99.8 1E-21 2.2E-26 162.2 5.9 82 12-93 369-453 (454)
5 TIGR01110 mdcA malonate decarb 99.6 1.3E-16 2.8E-21 135.0 4.0 61 11-71 402-477 (543)
6 TIGR01584 citF citrate lyase, 99.5 4.1E-14 8.9E-19 118.8 5.9 75 11-88 385-461 (492)
7 TIGR02428 pcaJ_scoB_fam 3-oxoa 98.1 2.1E-06 4.5E-11 64.5 3.7 62 14-81 137-199 (207)
8 PF04223 CitF: Citrate lyase, 95.3 0.0095 2.1E-07 50.8 1.9 77 8-88 359-437 (466)
9 COG3051 CitF Citrate lyase, al 86.7 1.7 3.7E-05 37.5 5.5 74 10-87 406-481 (513)
10 PF11997 DUF3492: Domain of un 85.3 0.79 1.7E-05 35.6 2.6 43 39-87 193-239 (268)
11 COG4195 Phage-related replicat 83.2 0.62 1.3E-05 36.4 1.3 50 42-91 98-154 (208)
12 PF04512 Baculo_PEP_N: Baculov 83.0 0.35 7.6E-06 33.5 -0.2 29 42-70 53-81 (97)
13 PF15500 Toxin_39: Putative RN 55.9 13 0.00028 26.1 2.6 39 41-79 14-54 (96)
14 PF08447 PAS_3: PAS fold; Int 51.5 19 0.00041 21.4 2.6 35 51-85 7-45 (91)
15 PF14407 Frankia_peptide: Ribo 46.1 8 0.00017 25.0 0.3 21 65-85 3-25 (61)
16 PF01008 IF-2B: Initiation fac 45.1 10 0.00022 28.7 0.8 16 38-53 265-280 (282)
17 PF07875 Coat_F: Coat F domain 42.1 17 0.00036 22.2 1.3 22 64-85 21-42 (64)
18 cd03820 GT1_amsD_like This fam 40.3 41 0.0009 23.3 3.2 71 15-86 255-333 (348)
19 PRK06372 translation initiatio 38.3 12 0.00027 29.5 0.4 17 38-54 231-247 (253)
20 TIGR03087 stp1 sugar transfera 35.1 79 0.0017 24.4 4.4 72 15-86 300-376 (397)
21 PRK08335 translation initiatio 34.8 15 0.00033 29.1 0.4 16 38-53 254-269 (275)
22 cd03792 GT1_Trehalose_phosphor 34.1 43 0.00094 25.4 2.8 71 15-86 276-351 (372)
23 COG4273 Uncharacterized conser 33.9 18 0.00039 26.7 0.6 23 39-61 90-112 (135)
24 COG1184 GCD2 Translation initi 32.8 27 0.00058 28.5 1.5 22 38-61 272-293 (301)
25 PF11387 DUF2795: Protein of u 31.6 52 0.0011 19.2 2.2 19 69-87 3-21 (44)
26 cd03812 GT1_CapH_like This fam 31.0 83 0.0018 22.8 3.7 71 15-85 269-344 (358)
27 KOG3442|consensus 29.8 99 0.0021 22.8 3.9 37 53-89 50-86 (132)
28 PF08859 DGC: DGC domain; Int 28.7 28 0.0006 23.8 0.9 21 40-60 75-95 (110)
29 PF00534 Glycos_transf_1: Glyc 28.7 12 0.00026 24.9 -1.0 73 14-86 94-172 (172)
30 PRK11023 outer membrane lipopr 28.6 27 0.00058 25.8 0.8 31 40-71 144-174 (191)
31 COG3778 Uncharacterized protei 27.6 1E+02 0.0022 23.9 3.8 33 60-92 37-69 (188)
32 TIGR00524 eIF-2B_rel eIF-2B al 27.5 24 0.00051 28.2 0.4 16 38-53 286-301 (303)
33 PRK05720 mtnA methylthioribose 26.9 26 0.00056 28.7 0.5 17 38-54 314-330 (344)
34 PRK08535 translation initiatio 25.5 28 0.0006 27.6 0.4 16 38-53 276-291 (310)
35 TIGR00511 ribulose_e2b2 ribose 25.4 28 0.00061 27.5 0.4 16 38-53 271-286 (301)
36 KOG3220|consensus 25.3 50 0.0011 26.2 1.8 28 59-86 75-102 (225)
37 cd03808 GT1_cap1E_like This fa 25.0 1.3E+02 0.0028 20.9 3.7 72 15-86 266-343 (359)
38 TIGR00512 salvage_mtnA S-methy 24.7 30 0.00065 28.2 0.5 16 38-53 314-329 (331)
39 PLN03090 auxin-responsive fami 24.5 24 0.00051 24.8 -0.1 43 33-86 35-78 (104)
40 cd04946 GT1_AmsK_like This fam 23.8 95 0.0021 24.5 3.1 74 14-87 312-392 (407)
41 COG5230 Uncharacterized conser 23.5 35 0.00076 26.4 0.6 21 40-60 154-174 (194)
42 PRK06371 translation initiatio 22.9 33 0.00072 28.1 0.4 16 38-53 304-319 (329)
43 PF05883 Baculo_RING: Baculovi 22.6 42 0.00091 24.6 0.9 16 41-56 39-54 (134)
44 PRK05772 translation initiatio 22.3 36 0.00077 28.3 0.5 16 38-53 334-349 (363)
45 PRK06036 translation initiatio 22.3 36 0.00078 27.9 0.5 18 38-55 313-330 (339)
46 TIGR02058 lin0512_fam conserve 21.8 93 0.002 22.3 2.5 28 45-72 2-32 (116)
47 PF14633 SH2_2: SH2 domain; PD 21.5 31 0.00068 26.7 0.0 23 69-91 35-57 (220)
48 PRK08334 translation initiatio 21.2 39 0.00085 28.0 0.6 17 38-54 326-342 (356)
49 PF10410 DnaB_bind: DnaB-helic 21.1 65 0.0014 18.5 1.4 28 63-90 27-55 (59)
50 cd03814 GT1_like_2 This family 21.0 1.4E+02 0.0031 21.1 3.3 72 15-86 269-346 (364)
51 cd03805 GT1_ALG2_like This fam 20.8 1.8E+02 0.0039 21.7 4.0 70 15-86 302-378 (392)
52 PF11975 Glyco_hydro_4C: Famil 20.6 1.9E+02 0.004 21.4 4.0 46 18-68 155-200 (232)
53 PHA01630 putative group 1 glyc 20.4 1.4E+02 0.0031 23.4 3.5 70 14-83 211-308 (331)
54 cd03809 GT1_mtfB_like This fam 20.2 2.2E+02 0.0047 20.3 4.1 71 15-86 275-350 (365)
55 PF13297 Telomere_Sde2_2: Telo 20.1 82 0.0018 20.3 1.7 15 57-71 32-46 (60)
No 1
>PF13336 AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase C-terminal domain; PDB: 3EH7_A 3D3U_A 2OAS_A 3GK7_B 3QDQ_A 2G39_A 2NVV_C 3S8D_B 3QLI_B 3QLK_B ....
Probab=99.97 E-value=8.5e-33 Score=202.35 Aligned_cols=71 Identities=45% Similarity=0.595 Sum_probs=59.4
Q ss_pred cceEeeecccCCCCCcccc----CCCccccCCCcccEEEeccceeeCCCCCHHHHHHHHHccCCCCCHHHHHHHH
Q psy7218 13 FPFQVLFQASDSGRPDRQL----LGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAA 83 (93)
Q Consensus 13 ~~~~~l~st~~~g~~S~i~----~g~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~IAHP~fRe~L~~~A 83 (93)
.||.+||||+++|++|+|+ +|++||+||+|+||||||||+|||||||++|||++||+||||+|||+|.++|
T Consensus 80 ~sIial~St~~~G~~S~Iv~~l~~g~~vt~~r~dvd~VVTEyGvA~LrG~s~~eRA~aLI~iAHP~fR~~L~~~A 154 (154)
T PF13336_consen 80 KSIIALPSTAKDGTISRIVPRLPPGAPVTTPRHDVDYVVTEYGVADLRGKSIRERAEALISIAHPDFRDELREEA 154 (154)
T ss_dssp EEEEE--SEETTTTEESEESS-STTSSESB-TTT-SEEEETTEEEE-TT--HHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred ceEEEEecccCCCCccceeeeecCCCCcccCcccCCEEEcCCEEEEeCCCCHHHHHHHHHHccCccHHHHHHhhC
Confidence 3999999999999989996 4778999999999999999999999999999999999999999999999986
No 2
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=99.96 E-value=1.8e-29 Score=208.83 Aligned_cols=75 Identities=29% Similarity=0.330 Sum_probs=71.2
Q ss_pred ccceEeeecccCCCCCccccCC-CccccCCCcccEEEeccceeeCCCCCHHHHHHHHH-ccCCCCCHHHHHHHHHHh
Q psy7218 12 FFPFQVLFQASDSGRPDRQLLG-AGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALI-NIAPPDHREALEKAAFER 86 (93)
Q Consensus 12 ~~~~~~l~st~~~g~~S~i~~g-~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI-~IAHP~fRe~L~~~A~~~ 86 (93)
|+||++||||.++|++|+|+|. ++||+||+|+||||||||+|||||||++|||++|| +||||+|||+|.++|++.
T Consensus 383 ~~Siial~st~~~g~~S~Ivp~l~~vt~~r~dv~~vVTE~G~A~LrG~s~~eRa~~lI~~iAhP~fR~~L~~~~~~~ 459 (485)
T TIGR03458 383 YLSIFMTPSIAKGGKISSIVPMVSHVDHTEHDVMVIVTEQGLADLRGLSPRERARAIIDNCAHPDYRDLLRDYYERA 459 (485)
T ss_pred hhhhEEeeeecCCCceeeEeecCCCcCCchhhCCEEEecCEEEEecCCCHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 5779999999999999999875 46999999999999999999999999999999999 999999999999999987
No 3
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]
Probab=99.96 E-value=1.5e-29 Score=211.41 Aligned_cols=79 Identities=34% Similarity=0.318 Sum_probs=74.3
Q ss_pred cccceEeeecccCCCCCccccCC-CccccCCCcccEEEeccceeeCCCCCHHHHHHHHHccCCCCCHHHHHHHHHHhhcc
Q psy7218 11 CFFPFQVLFQASDSGRPDRQLLG-AGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFERLKV 89 (93)
Q Consensus 11 ~~~~~~~l~st~~~g~~S~i~~g-~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~IAHP~fRe~L~~~A~~~~k~ 89 (93)
||+||+++|||+++|++|+|+|- ++||+||||+||||||||+|||||||++|||++||+||||+||++|.++++++.++
T Consensus 392 A~~SI~~~pSta~~G~IS~IVP~~~hVd~~rhdvdvvVTE~GiAdLRGlsp~ERA~~iI~~AHPdyR~~L~ey~~ka~~~ 471 (501)
T COG0427 392 AYLSIFATPSTAKGGTISRIVPMLSHVDHTRHDVDVVVTEYGIADLRGLSPRERAAAIIECAHPDYRPWLEEYAEKAGLL 471 (501)
T ss_pred ceeeeEecccccCCCceeEEEecCCCccccccceeEEEEeechhhhcCCCHHHHHHHHHHhcCcchHHHHHHHHHHhccc
Confidence 56779999999999999999975 57999999999999999999999999999999999999999999999999988763
No 4
>KOG2828|consensus
Probab=99.85 E-value=1e-21 Score=162.18 Aligned_cols=82 Identities=55% Similarity=0.750 Sum_probs=74.0
Q ss_pred ccceEeeecccCCCCC---ccccCCCccccCCCcccEEEeccceeeCCCCCHHHHHHHHHccCCCCCHHHHHHHHHHhhc
Q psy7218 12 FFPFQVLFQASDSGRP---DRQLLGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFERLK 88 (93)
Q Consensus 12 ~~~~~~l~st~~~g~~---S~i~~g~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~IAHP~fRe~L~~~A~~~~k 88 (93)
.-+|.++||..+.|.. ..+..|++|+++|+++||||||||+|||||||++|||.+||.|+||..||.|.++|.+..|
T Consensus 369 gkpiialps~t~kGqskIVP~l~~gsgVvttrah~~y~VTEhGiA~L~Gks~rqRayElI~i~~p~dre~L~k~afdr~k 448 (454)
T KOG2828|consen 369 GKPIIALPSRTPKGQSKIVPTLKMGSGVVTTRAHLDYLVTEHGIADLWGKSPRQRAYELIQICAPPDREALLKAAFDRAK 448 (454)
T ss_pred CCceeecCccCCCCceeecccccccCceeeeccceeEEEecccHHHHhCCCHHHHHHHHHHhhCCchHHHHHHHHHHHHh
Confidence 4578999999887763 2333699999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy7218 89 VMPCA 93 (93)
Q Consensus 89 ~~~~~ 93 (93)
.||-+
T Consensus 449 vmpsa 453 (454)
T KOG2828|consen 449 VMPSA 453 (454)
T ss_pred cccCC
Confidence 99964
No 5
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=99.63 E-value=1.3e-16 Score=135.02 Aligned_cols=61 Identities=25% Similarity=0.248 Sum_probs=56.3
Q ss_pred cccceEeeecccCCCCCcccc----C----------CCccccCCCcccEEEeccceeeC-CCCCHHHHHHHHHccC
Q psy7218 11 CFFPFQVLFQASDSGRPDRQL----L----------GAGVVTTRAHVHYVVTEHGIAFL-FGKTLRQRAHALINIA 71 (93)
Q Consensus 11 ~~~~~~~l~st~~~g~~S~i~----~----------g~~Vt~~R~dvd~VVTEyGvA~L-rG~s~~eRA~aLI~IA 71 (93)
+=-+|+.++||.++|+.|+|+ + |++|+++|+|++|||||||+|+| +|+|.+||+++||+||
T Consensus 402 GgK~iI~l~st~~~g~~s~iV~~L~~~~~~~~~~~~g~pVt~~r~Dv~~VVTE~GiA~L~~g~s~~ERa~ali~IA 477 (543)
T TIGR01110 402 GRKLVVQMVETYQEGMKPTFVETLDAWELAKKAGMPLAPVMIYGDDVTHIVTEEGIAYLYKCRSLEERMQAIRGVA 477 (543)
T ss_pred CCeEEEEeecccCCCCCceeecccchhhhhhhccCCCCceEeccCCcCEEeccHhHhHHhhCCCHHHHHHHHHHHh
Confidence 345799999999999989885 3 78899999999999999999999 9999999999999998
No 6
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=99.48 E-value=4.1e-14 Score=118.84 Aligned_cols=75 Identities=24% Similarity=0.125 Sum_probs=60.4
Q ss_pred cccceEeeecccCCCCCccccCCC-ccccCCCcccEEEecccee-eCCCCCHHHHHHHHHccCCCCCHHHHHHHHHHhhc
Q psy7218 11 CFFPFQVLFQASDSGRPDRQLLGA-GVVTTRAHVHYVVTEHGIA-FLFGKTLRQRAHALINIAPPDHREALEKAAFERLK 88 (93)
Q Consensus 11 ~~~~~~~l~st~~~g~~S~i~~g~-~Vt~~R~dvd~VVTEyGvA-~LrG~s~~eRA~aLI~IAHP~fRe~L~~~A~~~~k 88 (93)
+++||.++||+ +|+.|+|++.. .||+||+++||||||||+| +|||+|++||++.=..+-.= --|+|.+.|++..+
T Consensus 385 A~~SII~~ps~--~Gris~IV~~v~~VtTpr~~Vd~VVTEyGIAvnlrg~~l~eR~~~~~~l~~~-~i~~l~~~a~~~~g 461 (492)
T TIGR01584 385 AKLSIIVAPLV--RGRIPTVVEKVTTVITPGESIDVLVTEIGIAINPKRKDLIEKLSNKPGIPLY-TIEELQEIAEEITG 461 (492)
T ss_pred hcceEEEEEcC--CCCcCeEeCCCCCEECChhhCCEEEccCEEecCCCCCCHHHHHhhcCCCCcc-cHHHHHHHHHHhhC
Confidence 55699999996 78899998754 5999999999999999999 99999999999921244332 34688888877654
No 7
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=98.15 E-value=2.1e-06 Score=64.48 Aligned_cols=62 Identities=19% Similarity=0.160 Sum_probs=45.9
Q ss_pred ceEeeecccCCCCCccccC-CCccccCCCcccEEEeccceeeCCCCCHHHHHHHHHccCCCCCHHHHHH
Q psy7218 14 PFQVLFQASDSGRPDRQLL-GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEK 81 (93)
Q Consensus 14 ~~~~l~st~~~g~~S~i~~-g~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~IAHP~fRe~L~~ 81 (93)
+|+.+++|+++|. |+|++ +..++++|.++++||||||+++|++. -..|++++-.--.|++.+
T Consensus 137 ~i~~~~~t~~~g~-~~iv~~~~~~~t~~~~v~~vVTe~gV~~l~~~-----~l~L~~~~pgv~~~dv~~ 199 (207)
T TIGR02428 137 VIVAMEHTTKDGE-SKILKECTLPLTGAGCVDRIVTELAVFEVTDG-----GLILRELAPGVTVEELQA 199 (207)
T ss_pred EEEEEeeECCCCc-eEEcccCCCccCCCCcccEEECCCEEEEEeCC-----cEEEEEECCCCCHHHHHH
Confidence 4677899887776 77765 44568899999999999999999976 256678843334555544
No 8
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=95.33 E-value=0.0095 Score=50.80 Aligned_cols=77 Identities=25% Similarity=0.150 Sum_probs=40.5
Q ss_pred ccccccceEeeecccCCCCCccccCCC-ccccCCCcccEEEecccee-eCCCCCHHHHHHHHHccCCCCCHHHHHHHHHH
Q psy7218 8 APLCFFPFQVLFQASDSGRPDRQLLGA-GVVTTRAHVHYVVTEHGIA-FLFGKTLRQRAHALINIAPPDHREALEKAAFE 85 (93)
Q Consensus 8 ~~~~~~~~~~l~st~~~g~~S~i~~g~-~Vt~~R~dvd~VVTEyGvA-~LrG~s~~eRA~aLI~IAHP~fRe~L~~~A~~ 85 (93)
+.-+=++|+..|.++ |+.+.+.... .|+||-..+|+||||||+| |-+-..+.|+.+.- .| -----|+|.+.|++
T Consensus 359 AagAkltIiv~PL~r--gRip~v~d~V~tv~TPGetVDVlVTe~GIAVNP~R~DL~e~l~~a-~l-p~~~IeeL~~~A~~ 434 (466)
T PF04223_consen 359 AAGAKLTIIVAPLVR--GRIPTVVDKVTTVTTPGETVDVLVTERGIAVNPRRPDLIERLKKA-GL-PLKTIEELKEKAEK 434 (466)
T ss_dssp HHHSSEEEEE--SEE--TTEESEESS-SS-SB-GGG--EEEETTEEEE-TT-HHHHHHCCCT-TS--EE-HHHHHHHHHH
T ss_pred hhhcCeEEEEchhhc--CCCCEEeCceeEEcCCCCceeEEEecCceeeCCCCHHHHHHHHhC-CC-CEEEHHHHHHHHHH
Confidence 334557888888875 5566676543 5889999999999999998 44432222222110 11 11234678887777
Q ss_pred hhc
Q psy7218 86 RLK 88 (93)
Q Consensus 86 ~~k 88 (93)
+.+
T Consensus 435 i~G 437 (466)
T PF04223_consen 435 ITG 437 (466)
T ss_dssp HH-
T ss_pred hcC
Confidence 654
No 9
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]
Probab=86.65 E-value=1.7 Score=37.46 Aligned_cols=74 Identities=24% Similarity=0.146 Sum_probs=45.8
Q ss_pred ccccceEeeecccCCCCCccccCCC-ccccCCCcccEEEeccceeeCCCCCHHHHHHHHHccCCCCC-HHHHHHHHHHhh
Q psy7218 10 LCFFPFQVLFQASDSGRPDRQLLGA-GVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDH-REALEKAAFERL 87 (93)
Q Consensus 10 ~~~~~~~~l~st~~~g~~S~i~~g~-~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~IAHP~f-Re~L~~~A~~~~ 87 (93)
.+-+||..-|- -+|++..+++.. .+.+|-..+|++|||||||-=- ...|=++.|.++-=|-+ -|+|.+.|+.+.
T Consensus 406 ~A~lsiI~aPL--vRgRIptvVd~V~tviTPG~svDvlvTd~GIavNP--~R~dL~e~l~~a~v~~~tIE~l~erA~~lt 481 (513)
T COG3051 406 AAALSIIVAPL--VRGRIPTVVDNVTTVITPGSSVDVLVTDHGIAVNP--ARPDLAERLSEAGVPVVTIEELQERAELLT 481 (513)
T ss_pred hhceeEEeehh--hcCccceeeccceeEecCCCceeEEEeccceeeCC--CCHHHHHHHHhCCCcEEEHHHHHHHHHHhc
Confidence 34455554443 356777776554 3667999999999999998322 22334455555544544 477777776554
No 10
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=85.27 E-value=0.79 Score=35.63 Aligned_cols=43 Identities=23% Similarity=0.265 Sum_probs=32.7
Q ss_pred CCCcccEEEeccceeeCCCCCHHHHHHHHHcc--C--CCCCHHHHHHHHHHhh
Q psy7218 39 TRAHVHYVVTEHGIAFLFGKTLRQRAHALINI--A--PPDHREALEKAAFERL 87 (93)
Q Consensus 39 ~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~I--A--HP~fRe~L~~~A~~~~ 87 (93)
-++.+-+++||||| -.+||-.+|+.- . -+.+|+-+++-.+.+.
T Consensus 193 ~~~g~P~lLTEHGI------Y~RER~~ei~~a~w~~~~~~~r~~wi~~f~~l~ 239 (268)
T PF11997_consen 193 YRYGRPFLLTEHGI------YTREREIEILQADWIWESPYVRDLWIRFFESLS 239 (268)
T ss_pred HHhCCCEEEecCCc------cHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 48899999999999 789999999942 2 3567877766554443
No 11
>COG4195 Phage-related replication protein [General function prediction only]
Probab=83.19 E-value=0.62 Score=36.38 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=40.8
Q ss_pred cccEEEeccceee------CCCCCHHHHHHHHH-ccCCCCCHHHHHHHHHHhhccCC
Q psy7218 42 HVHYVVTEHGIAF------LFGKTLRQRAHALI-NIAPPDHREALEKAAFERLKVMP 91 (93)
Q Consensus 42 dvd~VVTEyGvA~------LrG~s~~eRA~aLI-~IAHP~fRe~L~~~A~~~~k~~~ 91 (93)
|.||+|.=||.++ |-|-+.+++|..|. .+-+|-|+.+|...=.++-+++|
T Consensus 98 ~h~~vis~HGy~~~~~~~~lvGG~dR~~aa~i~~~L~~aGF~a~L~~~~~~LaG~hp 154 (208)
T COG4195 98 DHDYVISLHGYADIESKQTLVGGTDRELAAHIARALQLAGFSAELANSKHRLAGLHP 154 (208)
T ss_pred cccEEEEeccccCCCCceeeecCccHHHHHHHHHHHhhCCccHHhhcCCCcCCCCCc
Confidence 3499999999999 77889999999999 88999999888755445555544
No 12
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=82.99 E-value=0.35 Score=33.46 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=25.1
Q ss_pred cccEEEeccceeeCCCCCHHHHHHHHHcc
Q psy7218 42 HVHYVVTEHGIAFLFGKTLRQRAHALINI 70 (93)
Q Consensus 42 dvd~VVTEyGvA~LrG~s~~eRA~aLI~I 70 (93)
.-.++||+||++.|-|++..+++..+..+
T Consensus 53 s~K~Fit~lGv~~L~~r~~~~~~d~l~~~ 81 (97)
T PF04512_consen 53 SNKLFITALGVGVLCNRTNSKLADYLANI 81 (97)
T ss_pred CceeeeeHHHHHHHHhhcchHHHHHHHHH
Confidence 35799999999999999999988887654
No 13
>PF15500 Toxin_39: Putative RNase-like toxin
Probab=55.95 E-value=13 Score=26.06 Aligned_cols=39 Identities=18% Similarity=0.071 Sum_probs=24.2
Q ss_pred CcccEEEeccceeeCCCCCH-HHHHHHHHc-cCCCCCHHHH
Q psy7218 41 AHVHYVVTEHGIAFLFGKTL-RQRAHALIN-IAPPDHREAL 79 (93)
Q Consensus 41 ~dvd~VVTEyGvA~LrG~s~-~eRA~aLI~-IAHP~fRe~L 79 (93)
.-.|+|||+.|+-...|-.- -=|.+-=-. -|||+||++.
T Consensus 14 ggHdvvvTp~Gvg~CSppPCPvi~veYkkel~a~p~lk~wn 54 (96)
T PF15500_consen 14 GGHDVVVTPDGVGLCSPPPCPVIRVEYKKELAADPALKAWN 54 (96)
T ss_pred CCcceeECcccccccCCCCCCchhHHHHHHhccCHHHHHHH
Confidence 34689999999987666431 111111112 2799999887
No 14
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=51.50 E-value=19 Score=21.37 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=23.4
Q ss_pred ceeeCCCCCHHHH----HHHHHccCCCCCHHHHHHHHHH
Q psy7218 51 GIAFLFGKTLRQR----AHALINIAPPDHREALEKAAFE 85 (93)
Q Consensus 51 GvA~LrG~s~~eR----A~aLI~IAHP~fRe~L~~~A~~ 85 (93)
++..+.|.+..+= ...+.+.-|||.|+.+.+..++
T Consensus 7 ~~~~i~G~~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~ 45 (91)
T PF08447_consen 7 NFYEIFGYSPEEIGKPDFEEWLERIHPDDRERVRQAIQQ 45 (91)
T ss_dssp HHHHHHTS-HHHHTCBEHHHHHHHB-TTTHHHHHHHHHH
T ss_pred HHHHHhCCCHHHhccCCHHHHHhhcCHHHHHHHHHHHHH
Confidence 4456677777554 1226678899999999887776
No 15
>PF14407 Frankia_peptide: Ribosomally synthesized peptide prototyped by Frankia Franean1_4349.
Probab=46.10 E-value=8 Score=25.03 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=15.9
Q ss_pred HHHH--ccCCCCCHHHHHHHHHH
Q psy7218 65 HALI--NIAPPDHREALEKAAFE 85 (93)
Q Consensus 65 ~aLI--~IAHP~fRe~L~~~A~~ 85 (93)
+.+| .+.+|+||.+|+.....
T Consensus 3 e~lIgrAv~D~~FRqqllad~~~ 25 (61)
T PF14407_consen 3 ERLIGRAVTDEAFRQQLLADPEE 25 (61)
T ss_pred HHHHHHHHcCHHHHHHHhcCHHH
Confidence 5677 78899999988765543
No 16
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=45.06 E-value=10 Score=28.68 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=13.2
Q ss_pred cCCCcccEEEecccee
Q psy7218 38 TTRAHVHYVVTEHGIA 53 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA 53 (93)
+|-..++.+|||.|+-
T Consensus 265 tP~~~It~~iTe~G~~ 280 (282)
T PF01008_consen 265 TPPDLITLIITELGIL 280 (282)
T ss_dssp EEGGG-SEEEETTEEE
T ss_pred cCHHHCCEEEcCCCCC
Confidence 5889999999999974
No 17
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=42.06 E-value=17 Score=22.18 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=17.4
Q ss_pred HHHHHccCCCCCHHHHHHHHHH
Q psy7218 64 AHALINIAPPDHREALEKAAFE 85 (93)
Q Consensus 64 A~aLI~IAHP~fRe~L~~~A~~ 85 (93)
..++.+.++|+.|+.|.....+
T Consensus 21 ~~a~~E~~np~lR~~l~~~~~~ 42 (64)
T PF07875_consen 21 ATAALECANPELRQILQQILNE 42 (64)
T ss_pred HHHHHHHCCHHHHHHHHHHHHH
Confidence 4567789999999999876654
No 18
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=40.25 E-value=41 Score=23.30 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=41.6
Q ss_pred eEeeecccCCCCCcccc---CCCccccCC--CcccEEEec--cceeeCCCCCHHHHHHHHHcc-CCCCCHHHHHHHHHHh
Q psy7218 15 FQVLFQASDSGRPDRQL---LGAGVVTTR--AHVHYVVTE--HGIAFLFGKTLRQRAHALINI-APPDHREALEKAAFER 86 (93)
Q Consensus 15 ~~~l~st~~~g~~S~i~---~g~~Vt~~R--~dvd~VVTE--yGvA~LrG~s~~eRA~aLI~I-AHP~fRe~L~~~A~~~ 86 (93)
++.+||...+...+-++ .|.+|.++. .....++.+ .|+. ....+..+=+++|.++ .+|+.|+++.+.+++.
T Consensus 255 ~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~ 333 (348)
T cd03820 255 IFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSEIIEDGVNGLL-VPNGDVEALAEALLRLMEDEELRKRMGANARES 333 (348)
T ss_pred EEEeCccccccCHHHHHHHHcCCCEEEecCCCchHhhhccCcceEE-eCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 45567776555555554 466665543 233344443 3432 2344556666666654 6999999998877544
No 19
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=38.34 E-value=12 Score=29.45 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=14.7
Q ss_pred cCCCcccEEEeccceee
Q psy7218 38 TTRAHVHYVVTEHGIAF 54 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA~ 54 (93)
||...++.||||.|+..
T Consensus 231 TPpelI~~iITE~Gi~~ 247 (253)
T PRK06372 231 TPPDLIDYYINENGFVK 247 (253)
T ss_pred CCHHHCCEEEcCCCccc
Confidence 58888999999999864
No 20
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=35.07 E-value=79 Score=24.43 Aligned_cols=72 Identities=22% Similarity=0.194 Sum_probs=42.7
Q ss_pred eEeeecccCCCCC-cccc---CCCccccCCCcccEEEeccceeeCCCCCHHHHHHHHHcc-CCCCCHHHHHHHHHHh
Q psy7218 15 FQVLFQASDSGRP-DRQL---LGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINI-APPDHREALEKAAFER 86 (93)
Q Consensus 15 ~~~l~st~~~g~~-S~i~---~g~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~I-AHP~fRe~L~~~A~~~ 86 (93)
++.+||....|-. .-++ .|.+|.++..-..-++.+.|..-+.-.+..+=+++|..+ .+|+.|+++-+.+++.
T Consensus 300 v~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~~~~~~~~ar~~ 376 (397)
T TIGR03087 300 VAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGIDALPGAELLVAADPADFAAAILALLANPAEREELGQAARRR 376 (397)
T ss_pred EEEecccccCCcccHHHHHHHcCCCEEecCcccccccccCCcceEeCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 5667875434432 2332 477766655333334333333223336888888888865 6888888887777654
No 21
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=34.81 E-value=15 Score=29.15 Aligned_cols=16 Identities=38% Similarity=0.380 Sum_probs=14.2
Q ss_pred cCCCcccEEEecccee
Q psy7218 38 TTRAHVHYVVTEHGIA 53 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA 53 (93)
||...++.||||.|+.
T Consensus 254 TP~~lIt~iITE~Gv~ 269 (275)
T PRK08335 254 TPWKYVRGIITELGIL 269 (275)
T ss_pred CCHHHCCEEEccCCcc
Confidence 5788899999999986
No 22
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=34.11 E-value=43 Score=25.38 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=40.1
Q ss_pred eEeeecccCCCCCcccc---CCCccccCCC-cccEEEeccceeeCCCCCHHHHHHHHHcc-CCCCCHHHHHHHHHHh
Q psy7218 15 FQVLFQASDSGRPDRQL---LGAGVVTTRA-HVHYVVTEHGIAFLFGKTLRQRAHALINI-APPDHREALEKAAFER 86 (93)
Q Consensus 15 ~~~l~st~~~g~~S~i~---~g~~Vt~~R~-dvd~VVTEyGvA~LrG~s~~eRA~aLI~I-AHP~fRe~L~~~A~~~ 86 (93)
++.+||...+.+.+-++ .|.+|..+.. ...-+|++.+..-+. .+..+=+++|..+ .+|+.|+++.+.+++.
T Consensus 276 ~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~i~~~~~g~~~-~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~ 351 (372)
T cd03792 276 VVLQKSIREGFGLTVTEALWKGKPVIAGPVGGIPLQIEDGETGFLV-DTVEEAAVRILYLLRDPELRRKMGANAREH 351 (372)
T ss_pred EEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCchhhcccCCceEEe-CCcHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 45678887777766664 4666555432 223334332211122 2445555566644 6898888887777653
No 23
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=33.92 E-value=18 Score=26.74 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.4
Q ss_pred CCCcccEEEeccceeeCCCCCHH
Q psy7218 39 TRAHVHYVVTEHGIAFLFGKTLR 61 (93)
Q Consensus 39 ~R~dvd~VVTEyGvA~LrG~s~~ 61 (93)
-+.|+++++||+|+..=++.+..
T Consensus 90 v~~D~~l~itdlGikK~~~~D~~ 112 (135)
T COG4273 90 VQADVHLTITDLGIKKTYPSDCK 112 (135)
T ss_pred cceeEEEEehhcccccCCCCCCC
Confidence 47899999999999988877654
No 24
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=32.78 E-value=27 Score=28.48 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=17.3
Q ss_pred cCCCcccEEEeccceeeCCCCCHH
Q psy7218 38 TTRAHVHYVVTEHGIAFLFGKTLR 61 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA~LrG~s~~ 61 (93)
||+-.+|++|||.|+ +.+.+..
T Consensus 272 TP~~~Id~iITe~G~--~pp~~~~ 293 (301)
T COG1184 272 TPPEYIDAIITELGI--IPPSSIY 293 (301)
T ss_pred CcHHHhheeeecCCC--CCchhHH
Confidence 688999999999998 5544443
No 25
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=31.57 E-value=52 Score=19.23 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=15.7
Q ss_pred ccCCCCCHHHHHHHHHHhh
Q psy7218 69 NIAPPDHREALEKAAFERL 87 (93)
Q Consensus 69 ~IAHP~fRe~L~~~A~~~~ 87 (93)
.+..|.-|++|++.|++.+
T Consensus 3 ~~dyPa~k~~Lv~~A~~~g 21 (44)
T PF11387_consen 3 GVDYPADKDELVRHARRNG 21 (44)
T ss_pred CCCCCCCHHHHHHHHHHcC
Confidence 4668999999999998753
No 26
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=31.01 E-value=83 Score=22.84 Aligned_cols=71 Identities=6% Similarity=-0.055 Sum_probs=42.9
Q ss_pred eEeeecccCCCCCcccc---CCCccccC-CCcccEEEeccceeeCCCCCHHHHHHHHHcc-CCCCCHHHHHHHHHH
Q psy7218 15 FQVLFQASDSGRPDRQL---LGAGVVTT-RAHVHYVVTEHGIAFLFGKTLRQRAHALINI-APPDHREALEKAAFE 85 (93)
Q Consensus 15 ~~~l~st~~~g~~S~i~---~g~~Vt~~-R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~I-AHP~fRe~L~~~A~~ 85 (93)
++.+||...+...+-++ .|.+|..+ .....-++.+.|.--+-.-++.+=+++|.++ .+|+.++.....+.+
T Consensus 269 i~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~ 344 (358)
T cd03812 269 VFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEVDLTDLVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKKK 344 (358)
T ss_pred EEEecccccCCCHHHHHHHHhCCCEEEEcCCchhhhhccCccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhc
Confidence 45667776555555554 46665443 3444445555332333344568888888855 799999887665543
No 27
>KOG3442|consensus
Probab=29.83 E-value=99 Score=22.80 Aligned_cols=37 Identities=32% Similarity=0.350 Sum_probs=30.9
Q ss_pred eeCCCCCHHHHHHHHHccCCCCCHHHHHHHHHHhhcc
Q psy7218 53 AFLFGKTLRQRAHALINIAPPDHREALEKAAFERLKV 89 (93)
Q Consensus 53 A~LrG~s~~eRA~aLI~IAHP~fRe~L~~~A~~~~k~ 89 (93)
++..|+=.-|=|..|++|-.|--+|++.+..+.++++
T Consensus 50 ~~~~~~iTlqEa~qILnV~~~ln~eei~k~yehLFev 86 (132)
T KOG3442|consen 50 ANSNGKITLQEAQQILNVKEPLNREEIEKRYEHLFEV 86 (132)
T ss_pred ccccccccHHHHhhHhCCCCCCCHHHHHHHHHHHHhc
Confidence 5666666667789999999999999999999888765
No 28
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=28.70 E-value=28 Score=23.80 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=16.8
Q ss_pred CCcccEEEeccceeeCCCCCH
Q psy7218 40 RAHVHYVVTEHGIAFLFGKTL 60 (93)
Q Consensus 40 R~dvd~VVTEyGvA~LrG~s~ 60 (93)
.-+.++++||+|+..-.+.+.
T Consensus 75 ~~~~~i~~tdlgi~k~~~~~~ 95 (110)
T PF08859_consen 75 KPDEHIVLTDLGIKKRKGDDV 95 (110)
T ss_pred CCceEEEEeecccccCCCCCC
Confidence 457789999999998876544
No 29
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=28.67 E-value=12 Score=24.86 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=44.8
Q ss_pred ceEeeecccCCCCCcccc---CCCccccC-CCcccEEEeccceeeC-CCCCHHHHHHHHHcc-CCCCCHHHHHHHHHHh
Q psy7218 14 PFQVLFQASDSGRPDRQL---LGAGVVTT-RAHVHYVVTEHGIAFL-FGKTLRQRAHALINI-APPDHREALEKAAFER 86 (93)
Q Consensus 14 ~~~~l~st~~~g~~S~i~---~g~~Vt~~-R~dvd~VVTEyGvA~L-rG~s~~eRA~aLI~I-AHP~fRe~L~~~A~~~ 86 (93)
.++.+||...+...+.++ .|.+|.++ -....-++.+++..-+ -..+..+=+.+|.++ .+|+.++.|.+.+++.
T Consensus 94 di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 94 DIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPELRQKLGKNARER 172 (172)
T ss_dssp SEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccccccccccccccccccccceeeccccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 467778888777765554 46654443 4555556666662211 122777777777744 6889999998888763
No 30
>PRK11023 outer membrane lipoprotein; Provisional
Probab=28.62 E-value=27 Score=25.76 Aligned_cols=31 Identities=39% Similarity=0.564 Sum_probs=21.4
Q ss_pred CCcccEEEeccceeeCCCCCHHHHHHHHHccC
Q psy7218 40 RAHVHYVVTEHGIAFLFGKTLRQRAHALINIA 71 (93)
Q Consensus 40 R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~IA 71 (93)
-.+++ |.||.|..-|.|.-.++.++..+++|
T Consensus 144 ~~~I~-V~t~~G~V~L~G~v~~~e~~~a~~iA 174 (191)
T PRK11023 144 SSNVK-VTTENGEVFLLGLVTQREAKAAADIA 174 (191)
T ss_pred cceEE-EEEECcEEEEEEEeCHHHHHHHHHHH
Confidence 33444 56799999999987666556555554
No 31
>COG3778 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.64 E-value=1e+02 Score=23.91 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=30.7
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHhhccCCC
Q psy7218 60 LRQRAHALINIAPPDHREALEKAAFERLKVMPC 92 (93)
Q Consensus 60 ~~eRA~aLI~IAHP~fRe~L~~~A~~~~k~~~~ 92 (93)
+.++|+.|++--.|+--.+|++++++..++-+|
T Consensus 37 V~~~A~~l~~e~~P~sa~~lL~~WEr~lgLp~~ 69 (188)
T COG3778 37 VAESAQSLADERDPDSATLLLEDWERLLGLPEC 69 (188)
T ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHcCCCcc
Confidence 578999999888999999999999999999888
No 32
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=27.48 E-value=24 Score=28.15 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=13.9
Q ss_pred cCCCcccEEEecccee
Q psy7218 38 TTRAHVHYVVTEHGIA 53 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA 53 (93)
||-..++.||||.|+-
T Consensus 286 TP~~lIt~iiTe~Gv~ 301 (303)
T TIGR00524 286 TPHDLIDAIITEKGII 301 (303)
T ss_pred CCHHHCCEEEcCCCcc
Confidence 5788899999999974
No 33
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=26.94 E-value=26 Score=28.66 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.6
Q ss_pred cCCCcccEEEeccceee
Q psy7218 38 TTRAHVHYVVTEHGIAF 54 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA~ 54 (93)
||-..++.||||.|+..
T Consensus 314 TP~~lIt~iITE~Gv~~ 330 (344)
T PRK05720 314 TPAELITGIITEKGIVA 330 (344)
T ss_pred CCHHHCCEEEcCCCccC
Confidence 57888999999999763
No 34
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=25.53 E-value=28 Score=27.64 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=14.1
Q ss_pred cCCCcccEEEecccee
Q psy7218 38 TTRAHVHYVVTEHGIA 53 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA 53 (93)
+|...++.+|||.|+.
T Consensus 276 tP~~lIt~iiTe~Gi~ 291 (310)
T PRK08535 276 TPPEYIDAIITEIGAI 291 (310)
T ss_pred CCHHHCCEEEeCCCcC
Confidence 5788899999999985
No 35
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=25.39 E-value=28 Score=27.55 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=14.1
Q ss_pred cCCCcccEEEecccee
Q psy7218 38 TTRAHVHYVVTEHGIA 53 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA 53 (93)
+|-..++.+|||.|+.
T Consensus 271 tP~~lIt~iITe~Gi~ 286 (301)
T TIGR00511 271 TPAEYIDAIITEVGQI 286 (301)
T ss_pred CCHHHCCEEEeCCCcC
Confidence 5788899999999985
No 36
>KOG3220|consensus
Probab=25.28 E-value=50 Score=26.22 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=22.8
Q ss_pred CHHHHHHHHHccCCCCCHHHHHHHHHHh
Q psy7218 59 TLRQRAHALINIAPPDHREALEKAAFER 86 (93)
Q Consensus 59 s~~eRA~aLI~IAHP~fRe~L~~~A~~~ 86 (93)
|..++-.+|.+|.||..|-+..+|--+.
T Consensus 75 ~~~~~r~~Ln~IthP~Ir~em~ke~~~~ 102 (225)
T KOG3220|consen 75 SDPKKRQALNKITHPAIRKEMFKEILKL 102 (225)
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 5567888999999999999998876543
No 37
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=24.96 E-value=1.3e+02 Score=20.92 Aligned_cols=72 Identities=22% Similarity=0.160 Sum_probs=40.5
Q ss_pred eEeeecccCCCCCcccc---CCCccccC-CCcccEEEeccceeeCC-CCCHHHHHHHHHc-cCCCCCHHHHHHHHHHh
Q psy7218 15 FQVLFQASDSGRPDRQL---LGAGVVTT-RAHVHYVVTEHGIAFLF-GKTLRQRAHALIN-IAPPDHREALEKAAFER 86 (93)
Q Consensus 15 ~~~l~st~~~g~~S~i~---~g~~Vt~~-R~dvd~VVTEyGvA~Lr-G~s~~eRA~aLI~-IAHP~fRe~L~~~A~~~ 86 (93)
++.+||...+...+-++ .|.+|.++ .....-++++.+..-+. -.+..+=+++|.. +.+|+.++++.+.+++.
T Consensus 266 i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 266 VFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred EEEecCcccCcchHHHHHHHcCCCEEEecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 45567766444444443 46664443 33344444433222222 2357777777775 47899998887777654
No 38
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=24.73 E-value=30 Score=28.22 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=14.1
Q ss_pred cCCCcccEEEecccee
Q psy7218 38 TTRAHVHYVVTEHGIA 53 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA 53 (93)
||...++.+|||.|+.
T Consensus 314 TP~~lIt~iITe~Gv~ 329 (331)
T TIGR00512 314 TPAELITGIITEKGVI 329 (331)
T ss_pred CCHHHCCEEEccCCcc
Confidence 5788899999999984
No 39
>PLN03090 auxin-responsive family protein; Provisional
Probab=24.54 E-value=24 Score=24.79 Aligned_cols=43 Identities=26% Similarity=0.331 Sum_probs=26.9
Q ss_pred CCccccCCCcccEEEeccceeeCCCCCHHHHHHHHH-ccCCCCCHHHHHHHHHHh
Q psy7218 33 GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALI-NIAPPDHREALEKAAFER 86 (93)
Q Consensus 33 g~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI-~IAHP~fRe~L~~~A~~~ 86 (93)
+.+.++|+..+-+.|-|. ++|-.-=+ -+.||-|++-|.. |++-
T Consensus 35 ~~~~~vpkG~~aVyVG~~----------~~RfvVp~~~L~hP~F~~LL~~-aeeE 78 (104)
T PLN03090 35 GLPLDVPKGHFPVYVGEN----------RSRYIVPISFLTHPEFQSLLQQ-AEEE 78 (104)
T ss_pred cCCCCCCCCcEEEEECCC----------CEEEEEEHHHcCCHHHHHHHHH-HHHH
Confidence 345678999998888652 12322222 5689999976654 5543
No 40
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=23.76 E-value=95 Score=24.51 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=47.5
Q ss_pred ceEeeecccCCCCCcccc---CCCccccC-CCcccEEEecc--ceeeCCCCCHHHHHHHHHccC-CCCCHHHHHHHHHHh
Q psy7218 14 PFQVLFQASDSGRPDRQL---LGAGVVTT-RAHVHYVVTEH--GIAFLFGKTLRQRAHALINIA-PPDHREALEKAAFER 86 (93)
Q Consensus 14 ~~~~l~st~~~g~~S~i~---~g~~Vt~~-R~dvd~VVTEy--GvA~LrG~s~~eRA~aLI~IA-HP~fRe~L~~~A~~~ 86 (93)
.++.+||.+.+-..+-++ .|.+|..+ -..+.-+|.+. |+---.+-+..+=+++|..+. +|+.++++-+.|++.
T Consensus 312 ~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~ 391 (407)
T cd04946 312 DVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKAREK 391 (407)
T ss_pred CEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 466778887776666664 46665543 33344445554 443323557777777777654 699999998888765
Q ss_pred h
Q psy7218 87 L 87 (93)
Q Consensus 87 ~ 87 (93)
.
T Consensus 392 ~ 392 (407)
T cd04946 392 W 392 (407)
T ss_pred H
Confidence 4
No 41
>COG5230 Uncharacterized conserved protein [Function unknown]
Probab=23.45 E-value=35 Score=26.44 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=16.8
Q ss_pred CCcccEEEeccceeeCCCCCH
Q psy7218 40 RAHVHYVVTEHGIAFLFGKTL 60 (93)
Q Consensus 40 R~dvd~VVTEyGvA~LrG~s~ 60 (93)
=-|+..|-||||+.+|.--|.
T Consensus 154 LkD~G~i~tEyg~inL~Kdsq 174 (194)
T COG5230 154 LKDCGVIMTEYGLINLKKDSQ 174 (194)
T ss_pred ecccchhccccceEEeeccch
Confidence 357778889999999986654
No 42
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=22.93 E-value=33 Score=28.07 Aligned_cols=16 Identities=38% Similarity=0.318 Sum_probs=13.8
Q ss_pred cCCCcccEEEecccee
Q psy7218 38 TTRAHVHYVVTEHGIA 53 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA 53 (93)
||-..++.||||.|+.
T Consensus 304 TP~elIt~iITE~Gv~ 319 (329)
T PRK06371 304 TPNEYVTGFITEYGIF 319 (329)
T ss_pred CCHHHCCEEEccCCcc
Confidence 4778899999999985
No 43
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=22.56 E-value=42 Score=24.57 Aligned_cols=16 Identities=25% Similarity=0.036 Sum_probs=12.7
Q ss_pred CcccEEEeccceeeCC
Q psy7218 41 AHVHYVVTEHGIAFLF 56 (93)
Q Consensus 41 ~dvd~VVTEyGvA~Lr 56 (93)
++=-+.||++|.+||-
T Consensus 39 ~~GvV~vt~~g~lnLE 54 (134)
T PF05883_consen 39 NDGVVYVTDGGTLNLE 54 (134)
T ss_pred CCCEEEEecCCeehHH
Confidence 4445789999999984
No 44
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=22.31 E-value=36 Score=28.25 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=14.1
Q ss_pred cCCCcccEEEecccee
Q psy7218 38 TTRAHVHYVVTEHGIA 53 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA 53 (93)
||-..++.||||.|+.
T Consensus 334 TP~~lIt~iITE~Gv~ 349 (363)
T PRK05772 334 TPPKYITGIITEKGII 349 (363)
T ss_pred CCHHHCCEEEccCCcc
Confidence 5788899999999975
No 45
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=22.27 E-value=36 Score=27.87 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=15.2
Q ss_pred cCCCcccEEEeccceeeC
Q psy7218 38 TTRAHVHYVVTEHGIAFL 55 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA~L 55 (93)
||...++.||||.|+..-
T Consensus 313 TP~~lIt~iITE~Gv~~P 330 (339)
T PRK06036 313 TPMENVTAIITEKGVFYP 330 (339)
T ss_pred CCHHHCCEEEccCCcccC
Confidence 578889999999998753
No 46
>TIGR02058 lin0512_fam conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus.
Probab=21.81 E-value=93 Score=22.29 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=21.5
Q ss_pred EEEeccce-eeCCCCCHHHHHHHHH--ccCC
Q psy7218 45 YVVTEHGI-AFLFGKTLRQRAHALI--NIAP 72 (93)
Q Consensus 45 ~VVTEyGv-A~LrG~s~~eRA~aLI--~IAH 72 (93)
-++.|.|. .||+|.+.-+-|.+=+ +|.|
T Consensus 2 rl~iEmGmG~DlhGqD~TkAA~RAvrDAI~h 32 (116)
T TIGR02058 2 ILFIEMGMGVDQHGQNITKAAMRAVRNAIAS 32 (116)
T ss_pred eEEEEecccccccCccHHHHHHHHHHHHHhh
Confidence 46789988 6999999988877666 4444
No 47
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=21.52 E-value=31 Score=26.70 Aligned_cols=23 Identities=26% Similarity=0.027 Sum_probs=18.5
Q ss_pred ccCCCCCHHHHHHHHHHhhccCC
Q psy7218 69 NIAPPDHREALEKAAFERLKVMP 91 (93)
Q Consensus 69 ~IAHP~fRe~L~~~A~~~~k~~~ 91 (93)
.|.||.|+.-=.++|++.++.++
T Consensus 35 ~I~HP~F~n~~~~qAe~~L~~~~ 57 (220)
T PF14633_consen 35 VIKHPLFKNFNYKQAEEYLADQD 57 (220)
T ss_dssp HHCSTTEESS-HHHHHHHHCCS-
T ss_pred cccCCCccCCCHHHHHHHHhcCC
Confidence 46899999999999999888765
No 48
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=21.24 E-value=39 Score=28.01 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=14.6
Q ss_pred cCCCcccEEEeccceee
Q psy7218 38 TTRAHVHYVVTEHGIAF 54 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA~ 54 (93)
||...++.||||.|+..
T Consensus 326 TPp~lIt~iITE~Gv~~ 342 (356)
T PRK08334 326 TPHKYLTGIITDRGVVW 342 (356)
T ss_pred CCHHHCCEEEcCCCccC
Confidence 58888999999999763
No 49
>PF10410 DnaB_bind: DnaB-helicase binding domain of primase; InterPro: IPR019475 This entry represents the C-terminal region three-helical domain of DNA primase []. Primases synthesise short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases - this domain binds DnaB-helicase []. It is associated with the Toprim domain IPR006171 from INTERPRO, which is the central catalytic core. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=21.06 E-value=65 Score=18.50 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=19.1
Q ss_pred HHHHHH-ccCCCCCHHHHHHHHHHhhccC
Q psy7218 63 RAHALI-NIAPPDHREALEKAAFERLKVM 90 (93)
Q Consensus 63 RA~aLI-~IAHP~fRe~L~~~A~~~~k~~ 90 (93)
++..+| .|.+|-.|+..+++..+..++-
T Consensus 27 ~~~~~i~~i~~~i~r~~y~~~la~~~~i~ 55 (59)
T PF10410_consen 27 EAAPLIAQIPDPIERELYIRELAERLGIS 55 (59)
T ss_dssp HHHHHHTT--SHHHHHHHHHHHHHHCT-S
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCcC
Confidence 445566 7789999999999888777653
No 50
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=21.01 E-value=1.4e+02 Score=21.11 Aligned_cols=72 Identities=19% Similarity=0.103 Sum_probs=41.3
Q ss_pred eEeeecccCCCCCcccc---CCCccc-cCCCcccEEEeccceeeCCCC-CHHHHHHHHHc-cCCCCCHHHHHHHHHHh
Q psy7218 15 FQVLFQASDSGRPDRQL---LGAGVV-TTRAHVHYVVTEHGIAFLFGK-TLRQRAHALIN-IAPPDHREALEKAAFER 86 (93)
Q Consensus 15 ~~~l~st~~~g~~S~i~---~g~~Vt-~~R~dvd~VVTEyGvA~LrG~-s~~eRA~aLI~-IAHP~fRe~L~~~A~~~ 86 (93)
++.+||...+...+-++ -|.+|. .+.....-++.+++..-+.-- +..+=++.|.. +.+|+.++++.+.+.+.
T Consensus 269 ~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 346 (364)
T cd03814 269 VFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAE 346 (364)
T ss_pred EEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 45567766555555443 465544 344555556676555555433 33333344443 36999999998887664
No 51
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=20.77 E-value=1.8e+02 Score=21.74 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=42.2
Q ss_pred eEeeecccCCCCCcccc---CCCccccCCC--cccEEEec-cceeeCCCCCHHHHHHHHHcc-CCCCCHHHHHHHHHHh
Q psy7218 15 FQVLFQASDSGRPDRQL---LGAGVVTTRA--HVHYVVTE-HGIAFLFGKTLRQRAHALINI-APPDHREALEKAAFER 86 (93)
Q Consensus 15 ~~~l~st~~~g~~S~i~---~g~~Vt~~R~--dvd~VVTE-yGvA~LrG~s~~eRA~aLI~I-AHP~fRe~L~~~A~~~ 86 (93)
++.+||...+.+.+-++ .|.+|..++. ..+.|..+ .|.. ..+ +..+=+++|..+ .+|+.++++.+.+++.
T Consensus 302 ~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~-~~~-~~~~~a~~i~~l~~~~~~~~~~~~~a~~~ 378 (392)
T cd03805 302 ALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFL-CEP-TPEEFAEAMLKLANDPDLADRMGAAGRKR 378 (392)
T ss_pred EEEECCCcCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEE-eCC-CHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 44557776665565554 4667655432 23333332 3443 233 777777888755 6888898988877654
No 52
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases. It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.
Probab=20.58 E-value=1.9e+02 Score=21.44 Aligned_cols=46 Identities=20% Similarity=0.094 Sum_probs=32.9
Q ss_pred eecccCCCCCccccCCCccccCCCcccEEEeccceeeCCCCCHHHHHHHHH
Q psy7218 18 LFQASDSGRPDRQLLGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALI 68 (93)
Q Consensus 18 l~st~~~g~~S~i~~g~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI 68 (93)
.-.+..+|.+++++.++.|-+ ..+|+..|+-.+.--.+-+...+||
T Consensus 155 ~vNv~N~G~I~nLp~davVEv-----p~~v~~~Gi~P~~~g~lP~~~~~li 200 (232)
T PF11975_consen 155 VVNVPNNGAIPNLPDDAVVEV-----PCYVDGDGIHPVAVGPLPPAIAGLI 200 (232)
T ss_dssp EEEEE-TTSSTTS-TTSEEEE-----EEEEETTEEEEB-SB---HHHHHHH
T ss_pred EEECCCCCccCCCCCCcEEEE-----EEEEcCCeeEeccCCCCCHHHHHHH
Confidence 345667888999998877654 4799999999999989999999988
No 53
>PHA01630 putative group 1 glycosyl transferase
Probab=20.43 E-value=1.4e+02 Score=23.40 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=38.1
Q ss_pred ceEeeecccCCCCCcccc---CCCccccCCCc--ccEEEec-------------------cceeeCCCCCHHHHHHHHHc
Q psy7218 14 PFQVLFQASDSGRPDRQL---LGAGVVTTRAH--VHYVVTE-------------------HGIAFLFGKTLRQRAHALIN 69 (93)
Q Consensus 14 ~~~~l~st~~~g~~S~i~---~g~~Vt~~R~d--vd~VVTE-------------------yGvA~LrG~s~~eRA~aLI~ 69 (93)
-++.+||...+.+.+-++ .|.+|..+... .++|.-+ +++.-+.-.+..+-+++++.
T Consensus 211 Dv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~ 290 (331)
T PHA01630 211 DILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLE 290 (331)
T ss_pred CEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCCCHHHHHHHHHH
Confidence 366778887666666564 46665544322 2333332 22233444578888888885
Q ss_pred -cCCC---CCHHHHHHHH
Q psy7218 70 -IAPP---DHREALEKAA 83 (93)
Q Consensus 70 -IAHP---~fRe~L~~~A 83 (93)
+.+| +.|+.+...+
T Consensus 291 ~l~~~~~~~~~~~~~~~~ 308 (331)
T PHA01630 291 ALANWTPEKKKENLEGRA 308 (331)
T ss_pred HHhCCCHHHHHHHHHHHH
Confidence 4554 3444444433
No 54
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=20.16 E-value=2.2e+02 Score=20.28 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=42.5
Q ss_pred eEeeecccCCCCCcccc---CCCccccCCC-cccEEEeccceeeCCCCCHHHHHHHHHc-cCCCCCHHHHHHHHHHh
Q psy7218 15 FQVLFQASDSGRPDRQL---LGAGVVTTRA-HVHYVVTEHGIAFLFGKTLRQRAHALIN-IAPPDHREALEKAAFER 86 (93)
Q Consensus 15 ~~~l~st~~~g~~S~i~---~g~~Vt~~R~-dvd~VVTEyGvA~LrG~s~~eRA~aLI~-IAHP~fRe~L~~~A~~~ 86 (93)
++.+||...+...+-++ -|.+|.++.. ...-++.+.|+. +...+..+=+++|.+ +.+|+.+..+.+.+++.
T Consensus 275 ~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 350 (365)
T cd03809 275 AFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVAGDAALY-FDPLDPEALAAAIERLLEDPALREELRERGLAR 350 (365)
T ss_pred hhcccchhccCCCCHHHHhcCCCcEEecCCCCccceecCceee-eCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34457766655555443 4656554322 233345666653 233467777777776 67999999998877543
No 55
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=20.14 E-value=82 Score=20.26 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=12.7
Q ss_pred CCCHHHHHHHHHccC
Q psy7218 57 GKTLRQRAHALINIA 71 (93)
Q Consensus 57 G~s~~eRA~aLI~IA 71 (93)
|-|++|||++|-++=
T Consensus 32 GGTl~ERA~RLfs~k 46 (60)
T PF13297_consen 32 GGTLQERAARLFSVK 46 (60)
T ss_pred CCCHHHHHHHHHHhc
Confidence 679999999998763
Done!