Query psy7218
Match_columns 93
No_of_seqs 105 out of 815
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 21:08:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eu9_A Succinyl-COA:acetate co 100.0 3E-30 1E-34 210.2 7.6 81 4-88 393-475 (514)
2 3qli_A Coenzyme A transferase; 99.9 1.1E-27 3.8E-32 195.8 5.5 74 14-87 378-453 (455)
3 3eh7_A 4-hydroxybutyrate COA-t 99.9 1.3E-26 4.3E-31 187.1 5.3 74 15-88 357-434 (434)
4 2oas_A ATOA, 4-hydroxybutyrate 99.9 1.7E-26 6E-31 185.4 5.1 75 15-89 348-426 (436)
5 3gk7_A 4-hydroxybutyrate COA-t 99.9 1.8E-25 6.1E-30 181.8 6.0 75 15-89 355-436 (448)
6 2g39_A Acetyl-COA hydrolase; c 99.9 1.1E-24 3.8E-29 178.2 6.8 79 4-86 387-467 (497)
7 2nvv_A Acetyl-COA hydrolase/tr 99.9 2.1E-24 7.4E-29 176.8 4.5 79 4-86 383-463 (506)
8 3d3u_A 4-hydroxybutyrate COA-t 99.9 2.3E-23 7.9E-28 166.4 6.1 76 14-89 353-432 (439)
9 1xr4_A Putative citrate lyase 99.7 3.2E-18 1.1E-22 140.4 5.8 78 4-89 400-479 (509)
10 2hj0_A Putative citrate lyase, 99.7 7.1E-18 2.4E-22 138.8 3.2 74 12-89 408-483 (519)
11 3rrl_B Succinyl-COA:3-ketoacid 98.3 2.1E-07 7.2E-12 69.0 3.0 65 12-82 133-198 (207)
12 2ahu_A Putative enzyme YDIF; C 97.7 2.6E-06 9E-11 70.1 -2.3 52 12-63 410-485 (531)
13 3k6m_A Succinyl-COA:3-ketoacid 97.6 9E-06 3.1E-10 66.7 0.8 55 12-71 396-451 (481)
14 1poi_B Glutaconate coenzyme A- 96.5 0.002 6.9E-08 48.8 3.7 37 34-75 178-214 (260)
15 1w2w_B 5-methylthioribose-1-ph 45.1 7.7 0.00026 27.9 1.2 17 38-54 162-178 (191)
16 2vsy_A XCC0866; transferase, g 38.7 4.7 0.00016 30.7 -0.8 72 14-87 455-537 (568)
17 1rh9_A Endo-beta-mannanase; en 37.7 22 0.00074 26.0 2.7 25 42-66 285-310 (373)
18 3f1p_B ARYL hydrocarbon recept 36.7 23 0.0008 20.3 2.3 31 50-87 37-67 (121)
19 1vb5_A Translation initiation 34.3 14 0.00048 27.6 1.2 17 38-54 254-270 (276)
20 3qhp_A Type 1 capsular polysac 32.7 22 0.00074 22.2 1.8 71 15-86 77-154 (166)
21 1fm2_A Glutaryl 7-aminocephalo 32.4 52 0.0018 23.2 3.9 31 38-68 13-43 (169)
22 3a11_A Translation initiation 29.3 19 0.00065 27.9 1.2 17 38-54 298-314 (338)
23 1t9k_A Probable methylthioribo 28.9 19 0.00065 28.1 1.2 17 38-54 316-332 (347)
24 3ecs_A Translation initiation 28.0 21 0.0007 27.7 1.2 18 38-55 276-293 (315)
25 1sou_A 5,10-methenyltetrahydro 27.8 33 0.0011 24.1 2.2 16 43-58 169-184 (194)
26 2yvk_A Methylthioribose-1-phos 27.3 21 0.00072 28.2 1.2 17 38-54 341-357 (374)
27 2f9f_A First mannosyl transfer 27.0 31 0.0011 22.2 1.8 70 15-84 100-175 (177)
28 1t5o_A EIF2BD, translation ini 26.7 19 0.00065 28.2 0.8 16 38-53 312-327 (351)
29 3c8l_A FTSZ-like protein of un 24.1 76 0.0026 21.9 3.4 29 44-72 5-36 (122)
30 3f1p_A Endothelial PAS domain- 23.7 14 0.00049 21.0 -0.3 35 52-86 28-63 (117)
31 2p1m_A SKP1-like protein 1A; F 23.5 82 0.0028 21.2 3.5 29 54-84 124-152 (160)
32 3civ_A Endo-beta-1,4-mannanase 23.2 45 0.0015 25.5 2.3 19 40-58 245-263 (343)
33 2a0u_A Initiation factor 2B; S 21.9 30 0.001 27.4 1.1 17 38-54 349-366 (383)
34 1wkc_A HB8 TT1367 protein; str 21.9 48 0.0016 23.1 2.1 15 43-57 160-174 (184)
35 1nov_D Nodamura virus coat pro 21.3 42 0.0014 19.7 1.4 11 59-69 2-12 (44)
36 3hy3_A 5-formyltetrahydrofolat 20.7 31 0.0011 24.2 0.9 10 43-52 192-201 (203)
37 3l91_A Acyl-homoserine lactone 20.3 88 0.003 22.0 3.2 29 40-68 7-35 (170)
No 1
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=99.96 E-value=3e-30 Score=210.17 Aligned_cols=81 Identities=27% Similarity=0.303 Sum_probs=74.8
Q ss_pred ccccccccccceEeeecccCCCCCccccC-CCccccCCCcccEEEeccceeeCCCCCHHHHHHHHHc-cCCCCCHHHHHH
Q psy7218 4 CRNTAPLCFFPFQVLFQASDSGRPDRQLL-GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALIN-IAPPDHREALEK 81 (93)
Q Consensus 4 ~~~~~~~~~~~~~~l~st~~~g~~S~i~~-g~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~-IAHP~fRe~L~~ 81 (93)
+||+ |+||+++|||+++|++|+|+| +++|++||+|+||||||||+|||||||++|||++||+ ||||||||+|.+
T Consensus 393 ~~gA----~~si~~~~st~k~g~is~ivp~~~~v~~~~~~v~~vVTE~Gva~LrG~s~~era~~lI~~iAhp~~r~~L~~ 468 (514)
T 4eu9_A 393 ARSS----YLSIFLSPSTAKGGKISAIVPMAAHVDHIMQDAQIFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQD 468 (514)
T ss_dssp HHHS----SEEEEECCSEETTTTEESEESSCSSCSBCGGGCCEEEETTEEEECTTCCHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred hhcc----CcEEEEEeeecCCCcccccccCCCCccCCCCcCCEEEcCCEEEEecCCCHHHHHHHHHHHcCCCCcHHHHHH
Confidence 4665 578999999999999999975 7789999999999999999999999999999999996 999999999999
Q ss_pred HHHHhhc
Q psy7218 82 AAFERLK 88 (93)
Q Consensus 82 ~A~~~~k 88 (93)
++++..|
T Consensus 469 ~~~~a~~ 475 (514)
T 4eu9_A 469 YFDRALK 475 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988765
No 2
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=99.94 E-value=1.1e-27 Score=195.78 Aligned_cols=74 Identities=31% Similarity=0.400 Sum_probs=69.9
Q ss_pred ceEeeecccCCCCCccccCC--CccccCCCcccEEEeccceeeCCCCCHHHHHHHHHccCCCCCHHHHHHHHHHhh
Q psy7218 14 PFQVLFQASDSGRPDRQLLG--AGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFERL 87 (93)
Q Consensus 14 ~~~~l~st~~~g~~S~i~~g--~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~IAHP~fRe~L~~~A~~~~ 87 (93)
+|+++|||+++|++|+|++- .+|+++|+++||||||||+|||||||++|||++||+||||||||+|.++|++++
T Consensus 378 ~ii~~~s~~k~G~is~Iv~~~~~~vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~iAHPdfR~~L~~~A~~~~ 453 (455)
T 3qli_A 378 SIIATPSTAAKGTVSRIIPRIDGPVTTPRIDTHYIVTEFGAVNLKGLSSTERALRIIELAHPDFRDELTQAAKKMH 453 (455)
T ss_dssp EEEECCSEETTTTEESEESCCSSSCSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEEeCccCCCCCCeEeccCCCCcccCcccccEEEeccEEEECCCCCHHHHHHHHHHccCcchHHHHHHHHHHcC
Confidence 79999999999999999875 378999999999999999999999999999999999999999999999998865
No 3
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=99.93 E-value=1.3e-26 Score=187.08 Aligned_cols=74 Identities=49% Similarity=0.627 Sum_probs=69.8
Q ss_pred eEeeecccCCCCCccccC----CCccccCCCcccEEEeccceeeCCCCCHHHHHHHHHccCCCCCHHHHHHHHHHhhc
Q psy7218 15 FQVLFQASDSGRPDRQLL----GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFERLK 88 (93)
Q Consensus 15 ~~~l~st~~~g~~S~i~~----g~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~IAHP~fRe~L~~~A~~~~k 88 (93)
|+++|||+++|++|+|++ |++|+++|+++||||||||+|||+|+|++|||++||+||||+|||+|.++|++.++
T Consensus 357 ii~~~st~~~G~is~iv~~~~~g~~v~~~~~~v~~vVTE~Gva~L~G~~~~Era~~li~iAhpdfr~~L~~~a~~~~~ 434 (434)
T 3eh7_A 357 IMAIPSTAKNGTASRIVPIIAEGAAVTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIAIAHPDFREELTKHLRKRFG 434 (434)
T ss_dssp EEECCSEETTTTEESEESSCCTTCCEEECTTTCCEEEETTEEEECTTCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHC
T ss_pred EEEEeeecCCCCCCeEeeCCCCCCCceeCccceeEEEcccEEEECCCCCHHHHHHHHhcCCCCCcHHHHHHHHHHhhC
Confidence 999999999999899864 66799999999999999999999999999999999999999999999999998764
No 4
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=99.92 E-value=1.7e-26 Score=185.39 Aligned_cols=75 Identities=56% Similarity=0.755 Sum_probs=70.5
Q ss_pred eEeeecccCCCCCcccc----CCCccccCCCcccEEEeccceeeCCCCCHHHHHHHHHccCCCCCHHHHHHHHHHhhcc
Q psy7218 15 FQVLFQASDSGRPDRQL----LGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFERLKV 89 (93)
Q Consensus 15 ~~~l~st~~~g~~S~i~----~g~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~IAHP~fRe~L~~~A~~~~k~ 89 (93)
|++++||.++|++|+|+ +|+.|+++|++|||||||||+|||+|+|++|||++||+||||+|||+|.++|+++++.
T Consensus 348 ii~~~~t~k~G~iskiv~~~~~g~~v~t~~~~v~~vvTE~Gva~l~g~~~~era~~li~iAhp~~r~~L~~~a~~~~~~ 426 (436)
T 2oas_A 348 VIALPSTAAGGRISRIASVLSPGAGVVTTRAHVHYIVTEYGAANLKGRSLRERAQALINIAHPDFREQLSRDAFEVWGL 426 (436)
T ss_dssp EEECCSEETTTTEESEESSCCTTCCEEECTTTCCEEEETTEEEECTTCCHHHHHHHHHTTSCHHHHHHHHHHHHHTSCC
T ss_pred EEEEeeecCCCCCCEEeeccCCCCCcccCcccCCEEECCCEEEECCCCCHHHHHHHhhcCCCcchHHHHHHHHHHhcch
Confidence 99999999999989986 3578999999999999999999999999999999999999999999999999988764
No 5
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=99.91 E-value=1.8e-25 Score=181.82 Aligned_cols=75 Identities=37% Similarity=0.511 Sum_probs=70.4
Q ss_pred eEeeecccCCC---CCccccC----CCccccCCCcccEEEeccceeeCCCCCHHHHHHHHHccCCCCCHHHHHHHHHHhh
Q psy7218 15 FQVLFQASDSG---RPDRQLL----GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFERL 87 (93)
Q Consensus 15 ~~~l~st~~~g---~~S~i~~----g~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~IAHP~fRe~L~~~A~~~~ 87 (93)
|+++|||+++| ++|+|++ |++|+++|+++||||||||+|||+|+|++|||++||+||||+|||+|.+++++++
T Consensus 355 Ii~~~st~k~G~g~~is~IV~~~~~g~~v~t~~~~v~~iVTE~Gva~L~G~~~~era~~li~iAhp~fr~~L~~~~~~~~ 434 (448)
T 3gk7_A 355 IIAMPSVAKKKDGSMISKIVPFIDHGAAVTTSRNDADYVVTEYGIAEMKGKSLQDRARALINIAHPDFKDELKAEFEKRF 434 (448)
T ss_dssp EEECCSEEECTTSCEEESEESSCCTTCCCSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred EEEEeeeecCCCCCCCCeEeecCCCCCCceeCcCceEEEEeceEEEEccCCCHHHHHHHHHhcCCCcCHHHHHHHHHHhh
Confidence 99999999988 6788864 6679999999999999999999999999999999999999999999999999988
Q ss_pred cc
Q psy7218 88 KV 89 (93)
Q Consensus 88 k~ 89 (93)
|.
T Consensus 435 ~~ 436 (448)
T 3gk7_A 435 NA 436 (448)
T ss_dssp SS
T ss_pred cc
Confidence 75
No 6
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=99.90 E-value=1.1e-24 Score=178.20 Aligned_cols=79 Identities=27% Similarity=0.261 Sum_probs=72.6
Q ss_pred ccccccccccceEeeecccCCCCCccccCC-CccccCCCcccEEEeccceeeCCCCCHHHHHHHHH-ccCCCCCHHHHHH
Q psy7218 4 CRNTAPLCFFPFQVLFQASDSGRPDRQLLG-AGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALI-NIAPPDHREALEK 81 (93)
Q Consensus 4 ~~~~~~~~~~~~~~l~st~~~g~~S~i~~g-~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI-~IAHP~fRe~L~~ 81 (93)
+||+ +.||+++|||+++|++|+|++- +.|+++|+++|+||||||+|||+|+|++|||++|| +||||+|||+|.+
T Consensus 387 ~~gA----~~sii~~~st~k~G~iskIv~~~~~v~t~~~~v~~vVTE~gva~l~G~~~~era~~lI~~iAhp~fr~~L~~ 462 (497)
T 2g39_A 387 ARNA----HLAIFVTKSIAKGGNISSVVPMVSHVDHTEHDVDILVTEQGLADLRGLAPRERARVIIENCVHPSYQAPLLD 462 (497)
T ss_dssp HHHC----SEEEEECCSEEGGGTEESEESSCSSCSBCGGGCCEEEETTEEEECTTCCHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred hccC----CEEEEEEccccCCCCcCeEeeCCCCeecCCCceeEEECCCEEEEccCCCHHHHHHHHHHHhcCcchHHHHHH
Confidence 4555 4789999999999999999865 46999999999999999999999999999999999 9999999999999
Q ss_pred HHHHh
Q psy7218 82 AAFER 86 (93)
Q Consensus 82 ~A~~~ 86 (93)
+++++
T Consensus 463 ~~~~~ 467 (497)
T 2g39_A 463 YFEAA 467 (497)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99877
No 7
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=99.89 E-value=2.1e-24 Score=176.84 Aligned_cols=79 Identities=25% Similarity=0.258 Sum_probs=72.3
Q ss_pred ccccccccccceEeeecccCCCCCccccCC-CccccCCCcccEEEeccceeeCCCCCHHHHHHHHH-ccCCCCCHHHHHH
Q psy7218 4 CRNTAPLCFFPFQVLFQASDSGRPDRQLLG-AGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALI-NIAPPDHREALEK 81 (93)
Q Consensus 4 ~~~~~~~~~~~~~~l~st~~~g~~S~i~~g-~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI-~IAHP~fRe~L~~ 81 (93)
+||++ +||+++|||+++|++|+|++- +.|+++|+++|+||||||+|||+|+|++|||++|| +||||+|||+|.+
T Consensus 383 ~~gA~----~si~~~~st~k~G~is~iV~~~~~v~~~~~~v~~vVTE~Gva~L~G~~~~era~~iI~~iAhp~fr~~L~~ 458 (506)
T 2nvv_A 383 TRNSY----VSIFTTPSVMKDGKISSFVPMVAHHDHSEHSVKVIISEWGVADLRGKNPRERAHEIIDKCVHPDYRPLLRQ 458 (506)
T ss_dssp HHHSS----SEEEECCSEEGGGTEESEESSCSSCSBCTTTCCEEEETTEEEECTTCCHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred hhccC----eEEEEeccccCCCCCCeEEeCCCCcccCCCceeEEECCCEEEEccCCCHHHHHHHHHHHcCCCCchHHHHH
Confidence 45554 789999999999999999864 46999999999999999999999999999999999 9999999999999
Q ss_pred HHHHh
Q psy7218 82 AAFER 86 (93)
Q Consensus 82 ~A~~~ 86 (93)
++++.
T Consensus 459 ~~~~~ 463 (506)
T 2nvv_A 459 YLELG 463 (506)
T ss_dssp HTTSC
T ss_pred HHHHh
Confidence 88877
No 8
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=99.88 E-value=2.3e-23 Score=166.41 Aligned_cols=76 Identities=45% Similarity=0.573 Sum_probs=65.8
Q ss_pred ceEeeecccCCCCCccccC----CCccccCCCcccEEEeccceeeCCCCCHHHHHHHHHccCCCCCHHHHHHHHHHhhcc
Q psy7218 14 PFQVLFQASDSGRPDRQLL----GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFERLKV 89 (93)
Q Consensus 14 ~~~~l~st~~~g~~S~i~~----g~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~IAHP~fRe~L~~~A~~~~k~ 89 (93)
+|++++||.++|++|+|++ |+.|+++|+++|+||||||+++|+|++++|||++||+||||+|||+|.++|++++++
T Consensus 353 ~ii~~~~t~k~G~~s~iv~~~~~g~~v~~~~~~v~~vVTE~gva~l~g~~l~e~a~~lI~iAhp~fr~~L~~~a~~~~~~ 432 (439)
T 3d3u_A 353 SIMAFPSTAKKGTESRIVPILKEGACVTTGRNEVDYVVTEYGVARLRGATLRQRAEALTAIAHPDFRPALEEEIRRRFEL 432 (439)
T ss_dssp EEEECCSEETTTTEESEESSCC------CCSTTCSEEEETTEEEECTTCCHHHHHHHHHHHSCTTHHHHHHHHHHTTC--
T ss_pred EEEEEeeecCCCCCCeEeECccCCCCceeCCCcceEEECCCEEEEeCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHcCch
Confidence 5999999999999888864 458999999999999999999999999999999999999999999999999988765
No 9
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=99.72 E-value=3.2e-18 Score=140.41 Aligned_cols=78 Identities=23% Similarity=0.155 Sum_probs=69.0
Q ss_pred ccccccccccceEeeecccCCCCCccccCC-CccccCCCcccEEEeccceee-CCCCCHHHHHHHHHccCCCCCHHHHHH
Q psy7218 4 CRNTAPLCFFPFQVLFQASDSGRPDRQLLG-AGVVTTRAHVHYVVTEHGIAF-LFGKTLRQRAHALINIAPPDHREALEK 81 (93)
Q Consensus 4 ~~~~~~~~~~~~~~l~st~~~g~~S~i~~g-~~Vt~~R~dvd~VVTEyGvA~-LrG~s~~eRA~aLI~IAHP~fRe~L~~ 81 (93)
+||++ .+|++++||+ |+.|+|++- +.++++|++|||||||||+|+ |+|++++|||++| +||| .|||+|.+
T Consensus 400 ~~gA~----~sii~~~~t~--~~~skIV~~~~~v~t~~~~V~~iVTE~Gva~~l~g~~l~Era~~l-~iAh-~~~e~L~~ 471 (509)
T 1xr4_A 400 AAGAD----LTIITAPLVR--GRIPCVVEKVLTTVTPGASVDVLVTDHGIAVNPARQDLLDNLRAA-GVAL-MTIEQLQQ 471 (509)
T ss_dssp HHHSS----EEEEECCSEE--TTEESBCSSCSSCSBCGGGCCEEEETTEEEECTTCHHHHHHHHHT-TCCC-BCHHHHHH
T ss_pred hhccC----eEEEEEcccC--CCCCeEeeCCCCcccCcCeeCEEECCcEEEEcCCCCCHHHHhhcc-CCCc-CCHHHHHH
Confidence 45554 6899999997 468999864 579999999999999999999 9999999999999 9999 59999999
Q ss_pred HHHHhhcc
Q psy7218 82 AAFERLKV 89 (93)
Q Consensus 82 ~A~~~~k~ 89 (93)
++++.++.
T Consensus 472 ~a~~~~~~ 479 (509)
T 1xr4_A 472 RAEQLTGK 479 (509)
T ss_dssp HHHHHHCC
T ss_pred HHHHhhCC
Confidence 99988875
No 10
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=99.69 E-value=7.1e-18 Score=138.83 Aligned_cols=74 Identities=23% Similarity=0.174 Sum_probs=67.7
Q ss_pred ccceEeeecccCCCCCccccCC-CccccCCCcccEEEeccceee-CCCCCHHHHHHHHHccCCCCCHHHHHHHHHHhhcc
Q psy7218 12 FFPFQVLFQASDSGRPDRQLLG-AGVVTTRAHVHYVVTEHGIAF-LFGKTLRQRAHALINIAPPDHREALEKAAFERLKV 89 (93)
Q Consensus 12 ~~~~~~l~st~~~g~~S~i~~g-~~Vt~~R~dvd~VVTEyGvA~-LrG~s~~eRA~aLI~IAHP~fRe~L~~~A~~~~k~ 89 (93)
+.+|+++|||+ |+.|+|++- +.|+++|++|||||||||+|+ |+|++++|||++| +||| +|||+|.++|++.+++
T Consensus 408 ~~~ii~~~~t~--g~~skiV~~~~~vtt~~~~V~~VVTE~Gva~~l~g~~l~Era~~l-~ia~-~~~~~L~~~a~~~~~~ 483 (519)
T 2hj0_A 408 KMSLVISPLVR--GRIPTFVDKVNTVITPGTSVDVVVTEVGIAINPNRPDLIEYFKDL-KVPQ-LTIEELKEKAYAIVGN 483 (519)
T ss_dssp SEEEEECCSEE--TTEESBCSSCSSCSBCGGGCCEEECSSCEEECTTCHHHHHHTTTC-SSCE-ECHHHHHHHHHHHHCS
T ss_pred CeEEEEEcccC--CCCCeeccCCCCcccCCCCCCEEECCCEEEECCCCCCHHHHHHHc-CCCc-ccHHHHHHHHHHhhCC
Confidence 36999999994 778899864 469999999999999999999 9999999999999 9999 9999999999998876
No 11
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=98.34 E-value=2.1e-07 Score=68.98 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=51.4
Q ss_pred ccceEeeecccCCCCCccccCC-CccccCCCcccEEEeccceeeCCCCCHHHHHHHHHccCCCCCHHHHHHH
Q psy7218 12 FFPFQVLFQASDSGRPDRQLLG-AGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKA 82 (93)
Q Consensus 12 ~~~~~~l~st~~~g~~S~i~~g-~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~IAHP~fRe~L~~~ 82 (93)
--+|+++++|+++|. |+|++- ..+.++|.++++||||||+++|++. ...|++||..-..|++.+.
T Consensus 133 ~~vi~~~~~t~k~G~-~kiv~~~~~~~t~~~~v~~vVTe~gV~~l~~~-----~l~L~eiapGv~~e~v~~~ 198 (207)
T 3rrl_B 133 KKVIVIMEHCNKYGE-SKVKKECSLPLTGKGVVHQLITDLAVFEFSNN-----AMKLVELQEGVSLDQVKEK 198 (207)
T ss_dssp SEEEEECCSBCTTSC-BSEESSCSSCCSBSSCCSEEECSSEEEEEETT-----EEEEEEECTTCCHHHHHHH
T ss_pred CEEEEEEeeecCCCc-ceECccccccCCCCCceEEEECCceEEEEcCC-----eEEEEEeCCCCCHHHHHHh
Confidence 457888899988776 777653 3345679999999999999999875 5778899888888887653
No 12
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=97.66 E-value=2.6e-06 Score=70.07 Aligned_cols=52 Identities=15% Similarity=-0.015 Sum_probs=40.0
Q ss_pred ccceEeeecccCC---------------CCCccccCCCc-cccC------CCcccEEEeccceeeCCC--CCHHHH
Q psy7218 12 FFPFQVLFQASDS---------------GRPDRQLLGAG-VVTT------RAHVHYVVTEHGIAFLFG--KTLRQR 63 (93)
Q Consensus 12 ~~~~~~l~st~~~---------------g~~S~i~~g~~-Vt~~------R~dvd~VVTEyGvA~LrG--~s~~eR 63 (93)
..+|++.++|+++ |+.|.|++-.. ++.+ |+++++||||+|+++|++ +++.||
T Consensus 410 ~~~i~~~~~t~~g~~~~~~~g~l~i~~eg~~~kiV~~v~~v~~~G~~~~~~~~v~~vVTE~gV~~l~~~gl~l~e~ 485 (531)
T 2ahu_A 410 KKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFTLKEDGLHLIEI 485 (531)
T ss_dssp SEEEEECCSEESSCEEEECSSCEEEEECCSEESEESCCSSCSBCHHHHHHTTCEEEEECSSEEEEEETTEEEEEEE
T ss_pred CeEEEEeccccCCceeeecCCeEEEeccCCCceECCCCccCCCCCcccccCCCcEEEECCCEEEEecCCCceeeee
Confidence 5678999999884 34788876543 5555 489999999999999994 555555
No 13
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=97.65 E-value=9e-06 Score=66.72 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=42.0
Q ss_pred ccceEeeecccCCCCCccccC-CCccccCCCcccEEEeccceeeCCCCCHHHHHHHHHccC
Q psy7218 12 FFPFQVLFQASDSGRPDRQLL-GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIA 71 (93)
Q Consensus 12 ~~~~~~l~st~~~g~~S~i~~-g~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~IA 71 (93)
--+|+++++|.++|. |+|.+ .+.+.++|+++++||||||+++|.+ ++...|++||
T Consensus 396 ~k~ii~~~~t~k~g~-~~Iv~~~~~~~t~~~~v~~vVTE~gV~~l~~----~~gl~L~eia 451 (481)
T 3k6m_A 396 TKVVVTMEHSAKGNA-HKIMEKCTLPLTGKQCVNRIITEKAVFDVDR----KKGLTLIELW 451 (481)
T ss_dssp SEEEEECCSBCGGGC-BSEESSCSSCCSBSSCCCEEECSSEEEEEET----TTEEEEEEEC
T ss_pred ceEEEEEeeEcCCCc-eEEecccccCCCCCCcceEEEcCcEEEEecC----CCcEEEEEeC
Confidence 367888999988776 67764 4556678999999999999999964 2345667774
No 14
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=96.49 E-value=0.002 Score=48.84 Aligned_cols=37 Identities=30% Similarity=0.245 Sum_probs=26.5
Q ss_pred CccccCCCcccEEEeccceeeCCCCCHHHHHHHHHccCCCCC
Q psy7218 34 AGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDH 75 (93)
Q Consensus 34 ~~Vt~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~IAHP~f 75 (93)
.+++..| ++++||||+|+++|.+++-. ..|+++ ||-.
T Consensus 178 ~~~t~~r-~~~~vVTe~gV~~~~~~~~~---l~L~e~-~Pgv 214 (260)
T 1poi_B 178 LGLPGDV-GPQLVVTDKGILKFDEKTKR---MYLAAY-YPTS 214 (260)
T ss_dssp TTCCTTC-CEEEEEETTEEEEECTTTCC---EEEEEE-CTTC
T ss_pred cccccCC-CCCEEEeCceEEEecCCCCc---EEEEEe-CCCC
Confidence 5666667 99999999999999987321 345555 4443
No 15
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=45.11 E-value=7.7 Score=27.89 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.9
Q ss_pred cCCCcccEEEeccceee
Q psy7218 38 TTRAHVHYVVTEHGIAF 54 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA~ 54 (93)
||-..++.||||.|+..
T Consensus 162 TP~~lIt~iITE~Gv~~ 178 (191)
T 1w2w_B 162 TPHELIDGIITEEGVFT 178 (191)
T ss_dssp ECGGGCSEEEETTEEEC
T ss_pred CCHHHcCEEEecCcccC
Confidence 58888999999999864
No 16
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=38.73 E-value=4.7 Score=30.75 Aligned_cols=72 Identities=11% Similarity=-0.012 Sum_probs=47.9
Q ss_pred ceEeeecccCCCCCcccc---CCCcccc-------CCCcccEEEeccceeeCCCCCHHHHHHHHHcc-CCCCCHHHHHHH
Q psy7218 14 PFQVLFQASDSGRPDRQL---LGAGVVT-------TRAHVHYVVTEHGIAFLFGKTLRQRAHALINI-APPDHREALEKA 82 (93)
Q Consensus 14 ~~~~l~st~~~g~~S~i~---~g~~Vt~-------~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~I-AHP~fRe~L~~~ 82 (93)
-++.+||.. +++.+.++ -|.||.+ ++..... ..+.|+.++-..+..+=+++|..+ .+|+.|+++.+.
T Consensus 455 dv~v~ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~-l~~~g~~e~v~~~~~~la~~i~~l~~~~~~~~~~~~~ 532 (568)
T 2vsy_A 455 DLFLDTHPY-NAHTTASDALWTGCPVLTTPGETFAARVAGSL-NHHLGLDEMNVADDAAFVAKAVALASDPAALTALHAR 532 (568)
T ss_dssp SEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHH-HHHHTCGGGBCSSHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CEEeeCCCC-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHH-HHHCCChhhhcCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 467788888 77666665 5777666 4332111 233466666666888888888765 589999998887
Q ss_pred HHHhh
Q psy7218 83 AFERL 87 (93)
Q Consensus 83 A~~~~ 87 (93)
+++..
T Consensus 533 ~~~~~ 537 (568)
T 2vsy_A 533 VDVLR 537 (568)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 76653
No 17
>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3
Probab=37.73 E-value=22 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=18.6
Q ss_pred cccEEEeccceeeCC-CCCHHHHHHH
Q psy7218 42 HVHYVVTEHGIAFLF-GKTLRQRAHA 66 (93)
Q Consensus 42 dvd~VVTEyGvA~Lr-G~s~~eRA~a 66 (93)
..-++|||||....- |-|...|.+-
T Consensus 285 ~kP~~i~E~G~~~~~~~~~~~~~~~~ 310 (373)
T 1rh9_A 285 KKPLLIAEFGKSTKTPGYTVAKRDNY 310 (373)
T ss_dssp TSCEEEEECCCCTTSTTCCHHHHHHH
T ss_pred CCCEEEEecCCCCCCCCCCHHHHHHH
Confidence 467999999998764 6677666653
No 18
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=36.65 E-value=23 Score=20.30 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=20.3
Q ss_pred cceeeCCCCCHHHHHHHHHccCCCCCHHHHHHHHHHhh
Q psy7218 50 HGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFERL 87 (93)
Q Consensus 50 yGvA~LrG~s~~eRA~aLI~IAHP~fRe~L~~~A~~~~ 87 (93)
|.-.+|.|++ +..+-||+.++.+.+...+..
T Consensus 37 ~~~~el~g~~-------~~~~i~p~d~~~~~~~~~~~~ 67 (121)
T 3f1p_B 37 YQPQELLGKN-------IVEFCHPEDQQLLRDSFQQVV 67 (121)
T ss_dssp CCGGGTTTSB-------GGGGBCTTTHHHHHHHHHHHT
T ss_pred CChHHHcCCC-------HHHeECHHHHHHHHHHHHHHH
Confidence 3344555654 335679999999887766554
No 19
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=34.29 E-value=14 Score=27.55 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=15.1
Q ss_pred cCCCcccEEEeccceee
Q psy7218 38 TTRAHVHYVVTEHGIAF 54 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA~ 54 (93)
+|-..++.||||.|+..
T Consensus 254 tP~~lI~~iITe~Gv~~ 270 (276)
T 1vb5_A 254 TPWKYVRGIITELGIVI 270 (276)
T ss_dssp ECGGGCSEEEETTEEEC
T ss_pred cCHHHCCEEEeCCCccC
Confidence 58999999999999864
No 20
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=32.69 E-value=22 Score=22.19 Aligned_cols=71 Identities=8% Similarity=0.006 Sum_probs=45.9
Q ss_pred eEeeecccCCCCCcccc---CCC-cccc-C-CCcccEEEeccceeeCCCCCHHHHHHHHHcc-CCCCCHHHHHHHHHHh
Q psy7218 15 FQVLFQASDSGRPDRQL---LGA-GVVT-T-RAHVHYVVTEHGIAFLFGKTLRQRAHALINI-APPDHREALEKAAFER 86 (93)
Q Consensus 15 ~~~l~st~~~g~~S~i~---~g~-~Vt~-~-R~dvd~VVTEyGvA~LrG~s~~eRA~aLI~I-AHP~fRe~L~~~A~~~ 86 (93)
++.+||...+...+-++ .|. +|.. + -....-++.+.|. -+.-.+..+=+++|..+ .+|+.++++.+.+++.
T Consensus 77 v~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 154 (166)
T 3qhp_A 77 LYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS-LFEPNNAKDLSAKIDWWLENKLERERMQNEYAKS 154 (166)
T ss_dssp EEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG-EECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce-EEcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 56678877666655554 575 7555 3 3445555666554 33445777777777754 5899999998877654
No 21
>1fm2_A Glutaryl 7-aminocephalosporanic acid acylase; cephalosporin acylase, antibiotics, penicillin acylase, N- terminal hydrolase; 2.00A {Brevundimonas diminuta} SCOP: d.153.1.2 PDB: 1ghd_A 3jtq_A 3jtr_A 2adv_A 2ae3_A 2ae5_A 2ae4_A 1or0_A 1jw0_A 1jvz_A 1gk1_A 1gk0_A
Probab=32.38 E-value=52 Score=23.23 Aligned_cols=31 Identities=6% Similarity=0.023 Sum_probs=26.4
Q ss_pred cCCCcccEEEeccceeeCCCCCHHHHHHHHH
Q psy7218 38 TTRAHVHYVVTEHGIAFLFGKTLRQRAHALI 68 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA~LrG~s~~eRA~aLI 68 (93)
.....|.++-++|||..++++|..+=.-++=
T Consensus 13 ~~~~~V~I~RD~~GVPHI~A~~~~dl~fa~G 43 (169)
T 1fm2_A 13 YKPRSNEILWDGYGVPHIYGVDAPSAFYGYG 43 (169)
T ss_dssp CCCCSCEEEEETTSCEEEECSSHHHHHHHHH
T ss_pred cCCCCeEEEECCCCceEEEeCCHhHHHHHHH
Confidence 3478899999999999999999988766654
No 22
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=29.29 E-value=19 Score=27.90 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=14.8
Q ss_pred cCCCcccEEEeccceee
Q psy7218 38 TTRAHVHYVVTEHGIAF 54 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA~ 54 (93)
||-..++.||||.|+..
T Consensus 298 TP~~lIt~iITE~Gv~~ 314 (338)
T 3a11_A 298 TPPEYVDVIITERGIIP 314 (338)
T ss_dssp ECGGGCSEEEETTEEEC
T ss_pred cCHHHcCEEecCCCccC
Confidence 58889999999999863
No 23
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=28.86 E-value=19 Score=28.11 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=14.9
Q ss_pred cCCCcccEEEeccceee
Q psy7218 38 TTRAHVHYVVTEHGIAF 54 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA~ 54 (93)
||-..++.||||.|+..
T Consensus 316 TP~~lIt~iITE~Gv~~ 332 (347)
T 1t9k_A 316 TENTLITAIITEKGVIR 332 (347)
T ss_dssp ECGGGCSEEEETTEEEC
T ss_pred CCHHHCCEEeccCCccC
Confidence 58899999999999863
No 24
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=27.97 E-value=21 Score=27.66 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=15.4
Q ss_pred cCCCcccEEEeccceeeC
Q psy7218 38 TTRAHVHYVVTEHGIAFL 55 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA~L 55 (93)
||-..++.||||.|+..-
T Consensus 276 TP~~lIt~iITe~Gv~~p 293 (315)
T 3ecs_A 276 TAPSLITLLFTDLGVLTP 293 (315)
T ss_dssp ECGGGCSEEEETTEEECG
T ss_pred CCHHHcCEEEcCCCCCCc
Confidence 588899999999998743
No 25
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6
Probab=27.83 E-value=33 Score=24.09 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=12.6
Q ss_pred ccEEEeccceeeCCCC
Q psy7218 43 VHYVVTEHGIAFLFGK 58 (93)
Q Consensus 43 vd~VVTEyGvA~LrG~ 58 (93)
+|+||||.|+-.....
T Consensus 169 ld~iiTe~~~~~~~~~ 184 (194)
T 1sou_A 169 VDVLVTEKNVRRLRDG 184 (194)
T ss_dssp CSEEECSSCEEESCCC
T ss_pred CCEEEECCeEEEecCC
Confidence 5899999999766543
No 26
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=27.25 E-value=21 Score=28.24 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.9
Q ss_pred cCCCcccEEEeccceee
Q psy7218 38 TTRAHVHYVVTEHGIAF 54 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA~ 54 (93)
||-..++.||||.|+..
T Consensus 341 TP~~lIt~iITE~Gv~~ 357 (374)
T 2yvk_A 341 TPHDLISGIITEKGIMT 357 (374)
T ss_dssp ECGGGCSEEEETTEEEC
T ss_pred cCHHHCCEEeccCCccC
Confidence 58889999999999863
No 27
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=26.96 E-value=31 Score=22.21 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=39.6
Q ss_pred eEeeecccCCCCCcccc---CCCccccCC-CcccEEEeccceeeCCCCCHHHHHHHHHccC-CCCC-HHHHHHHHH
Q psy7218 15 FQVLFQASDSGRPDRQL---LGAGVVTTR-AHVHYVVTEHGIAFLFGKTLRQRAHALINIA-PPDH-REALEKAAF 84 (93)
Q Consensus 15 ~~~l~st~~~g~~S~i~---~g~~Vt~~R-~dvd~VVTEyGvA~LrG~s~~eRA~aLI~IA-HP~f-Re~L~~~A~ 84 (93)
++.+||...+...+-++ .|.+|.++. ....-++.+.+..-+...+..+=+++|..+. +|+. ++.+.+.|+
T Consensus 100 i~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~a~ 175 (177)
T 2f9f_A 100 GLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLVNADVNEIIDAMKKVSKNPDKFKKDCFRRAK 175 (177)
T ss_dssp EEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEECSCHHHHHHHHHHHHHCTTTTHHHHHHHHH
T ss_pred EEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEeCCCHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 45567765555545453 466655433 2333344433222222567888888888664 8887 666666554
No 28
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=26.66 E-value=19 Score=28.17 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=14.3
Q ss_pred cCCCcccEEEecccee
Q psy7218 38 TTRAHVHYVVTEHGIA 53 (93)
Q Consensus 38 ~~R~dvd~VVTEyGvA 53 (93)
||-..++.||||.|+.
T Consensus 312 TP~~lIt~iITE~Gv~ 327 (351)
T 1t5o_A 312 TPLENVTALITEYGVI 327 (351)
T ss_dssp EEGGGCSEEEETTEEE
T ss_pred CCHHHCCEEEeCCCcc
Confidence 4788899999999986
No 29
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=24.13 E-value=76 Score=21.87 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=23.9
Q ss_pred cEEEeccce-eeCCCCCHHHHHHHHH--ccCC
Q psy7218 44 HYVVTEHGI-AFLFGKTLRQRAHALI--NIAP 72 (93)
Q Consensus 44 d~VVTEyGv-A~LrG~s~~eRA~aLI--~IAH 72 (93)
..++.|.|. .||+|.+.-+-|.+=+ +|.|
T Consensus 5 kr~~iEmGmG~DlhGqD~TkAA~RAvrDAI~~ 36 (122)
T 3c8l_A 5 KRLIIEMGMGIDQHGQEPTIAASRAVRNAIAH 36 (122)
T ss_dssp EEEEEEEEEEEESSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEEEecccccccCccHHHHHHHHHHHHHhh
Confidence 568899998 6999999988887766 6666
No 30
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=23.70 E-value=14 Score=21.02 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=21.3
Q ss_pred eeeCCCCCHHHHHH-HHHccCCCCCHHHHHHHHHHh
Q psy7218 52 IAFLFGKTLRQRAH-ALINIAPPDHREALEKAAFER 86 (93)
Q Consensus 52 vA~LrG~s~~eRA~-aLI~IAHP~fRe~L~~~A~~~ 86 (93)
..++.|.+..|=.- .+..+-||+.++.+.+..++.
T Consensus 28 ~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~ 63 (117)
T 3f1p_A 28 ITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNL 63 (117)
T ss_dssp HHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHH
T ss_pred hhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHH
Confidence 34566666554221 233667999999887665543
No 31
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=23.50 E-value=82 Score=21.25 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=19.8
Q ss_pred eCCCCCHHHHHHHHHccCCCCCHHHHHHHHH
Q psy7218 54 FLFGKTLRQRAHALINIAPPDHREALEKAAF 84 (93)
Q Consensus 54 ~LrG~s~~eRA~aLI~IAHP~fRe~L~~~A~ 84 (93)
.++|||+.| .+.+.+|.. ||-++=.++.+
T Consensus 124 ~ikgkt~ee-ir~~f~I~n-d~t~eEe~~ir 152 (160)
T 2p1m_A 124 MIKGKTPEE-IRTTFNIKN-DFTPEEEEEVR 152 (160)
T ss_dssp TTTTCCHHH-HHHHTTCCC-CCCHHHHHHHH
T ss_pred HHcCCCHHH-HHHHcCCCC-CCCHHHHHHHH
Confidence 468999987 888889976 45554434433
No 32
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}
Probab=23.24 E-value=45 Score=25.47 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=15.9
Q ss_pred CCcccEEEeccceeeCCCC
Q psy7218 40 RAHVHYVVTEHGIAFLFGK 58 (93)
Q Consensus 40 R~dvd~VVTEyGvA~LrG~ 58 (93)
+.+=.+++||+|..-+.|.
T Consensus 245 ~~~KPIiitE~G~~s~~g~ 263 (343)
T 3civ_A 245 AHEKPLFFMEVGCPSRSGS 263 (343)
T ss_dssp HHTCCEEEEEECCCSBTTG
T ss_pred HhCCCEEEEeeCCCCCCCC
Confidence 3467899999999988886
No 33
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=21.87 E-value=30 Score=27.44 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.8
Q ss_pred cCCCccc-EEEeccceee
Q psy7218 38 TTRAHVH-YVVTEHGIAF 54 (93)
Q Consensus 38 ~~R~dvd-~VVTEyGvA~ 54 (93)
||-..++ .||||.|+..
T Consensus 349 TP~~lIt~~iITE~Gv~~ 366 (383)
T 2a0u_A 349 TPSELITGGIITEKGVQA 366 (383)
T ss_dssp ECGGGCCSEEECSSCEEC
T ss_pred cChHHCCcEEEccCCccC
Confidence 5888899 9999999873
No 34
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6
Probab=21.85 E-value=48 Score=23.09 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=12.3
Q ss_pred ccEEEeccceeeCCC
Q psy7218 43 VHYVVTEHGIAFLFG 57 (93)
Q Consensus 43 vd~VVTEyGvA~LrG 57 (93)
+|+||||.|+-....
T Consensus 160 ld~iiT~~~~~~~~~ 174 (184)
T 1wkc_A 160 VDHLATEAGVEAVKR 174 (184)
T ss_dssp CSEEEETTEEEECCC
T ss_pred cCEEEECCEEEEcCC
Confidence 589999999977654
No 35
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=21.31 E-value=42 Score=19.69 Aligned_cols=11 Identities=18% Similarity=0.531 Sum_probs=9.4
Q ss_pred CHHHHHHHHHc
Q psy7218 59 TLRQRAHALIN 69 (93)
Q Consensus 59 s~~eRA~aLI~ 69 (93)
+.|||++++++
T Consensus 2 ~mWErVk~ilk 12 (44)
T 1nov_D 2 TFWERVRSILK 12 (44)
T ss_pred cHHHHHHHHHH
Confidence 68999999983
No 36
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A
Probab=20.72 E-value=31 Score=24.23 Aligned_cols=10 Identities=30% Similarity=0.235 Sum_probs=6.3
Q ss_pred ccEEEeccce
Q psy7218 43 VHYVVTEHGI 52 (93)
Q Consensus 43 vd~VVTEyGv 52 (93)
+|+||||.|+
T Consensus 192 ld~iiTe~~~ 201 (203)
T 3hy3_A 192 VDEVLYEDSS 201 (203)
T ss_dssp CSEEECC---
T ss_pred CCEEEeCCCc
Confidence 6899999986
No 37
>3l91_A Acyl-homoserine lactone acylase PVDQ subunit ALPH; pyoverdine, NTN hydrolase, quorum sensing, ZY hydrolase; HET: OCA; 1.66A {Pseudomonas aeruginosa} PDB: 2wyb_A* 2wyd_A* 2wyc_A 2wye_A* 3l94_A* 3src_A* 3srb_A* 3sra_A*
Probab=20.27 E-value=88 Score=22.00 Aligned_cols=29 Identities=14% Similarity=0.020 Sum_probs=24.7
Q ss_pred CCcccEEEeccceeeCCCCCHHHHHHHHH
Q psy7218 40 RAHVHYVVTEHGIAFLFGKTLRQRAHALI 68 (93)
Q Consensus 40 R~dvd~VVTEyGvA~LrG~s~~eRA~aLI 68 (93)
..++.++-++|||.+++++|..+=.-++=
T Consensus 7 ~~~v~I~rD~~GVPHI~A~~~~dl~fg~G 35 (170)
T 3l91_A 7 GLAADIRWTAYGVPHIRAKDERGLGYGIG 35 (170)
T ss_dssp CCEEEEEEEGGGEEEEECSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCceEEeCCHhhHHHHHH
Confidence 56788999999999999999988666654
Done!