RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7218
         (93 letters)



>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445)
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 274

 Score = 74.5 bits (183), Expect = 3e-18
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 32  LGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALI-NIAPPDHREALEKAA 83
           + + V  T   V  +VTE G+A L G   R+RA  +I N   P ++  L    
Sbjct: 189 MVSHVDHTEHDVDILVTEQGLADLRGLAPRERARVIIENCVHPSYQAPLLDYF 241


>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain,
           citF2 {Salmonella typhimurium [TaxId: 90371]}
          Length = 269

 Score = 72.2 bits (177), Expect = 2e-17
 Identities = 12/53 (22%), Positives = 18/53 (33%)

Query: 33  GAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFE 85
           G  V   R  +   +   G+A +  + L+QRA  L     P        A   
Sbjct: 203 GIAVNPARQDLLDNLRAAGVALMTIEQLQQRAEQLTGKPQPIEFTDRVVAVVR 255


>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal
           domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 221

 Score = 30.1 bits (67), Expect = 0.024
 Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 17  VLFQASDSGRPDRQLLGAGVVTTRAHVHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHR 76
            +  ++              +T +  V+ ++TE  +  +     R++   LI +      
Sbjct: 141 TMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDV----DRKKGLTLIELWEGLTV 196

Query: 77  EALEKAAFERLKVMP 91
           + ++K+      V P
Sbjct: 197 DDIKKSTGCDFAVSP 211


>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia
          coli [TaxId: 562]}
          Length = 68

 Score = 23.1 bits (50), Expect = 3.6
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 55 LFGKTLRQRAHALINIAPPDHREALEKAAFERLKV 89
          +  + LRQ     I   P D R A+     + L  
Sbjct: 3  MLSEELRQIVFRTIESLPEDLRMAITLRELDGLSY 37


>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD
           {Clostridium acetobutylicum [TaxId: 1488]}
          Length = 281

 Score = 23.6 bits (49), Expect = 4.6
 Identities = 3/27 (11%), Positives = 11/27 (40%), Gaps = 1/27 (3%)

Query: 63  RAHALINIAPPDHREALEKAAFERLKV 89
                      + +E+L++   + L++
Sbjct: 256 MLELTTGDITREWKESLKE-YIDLLQM 281


>d1l5ja2 c.8.2.1 (A:161-372) Aconitase B, second N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 212

 Score = 23.2 bits (50), Expect = 6.2
 Identities = 5/23 (21%), Positives = 10/23 (43%)

Query: 52  IAFLFGKTLRQRAHALINIAPPD 74
           I  + G+ L  +A   + +   D
Sbjct: 185 IPLIIGRGLTTKAREALGLPHSD 207


>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga
           maritima [TaxId: 2336]}
          Length = 375

 Score = 23.1 bits (48), Expect = 8.1
 Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 43  VHYVVTEHGIAFLFGKTLRQRAHALINIAPPDHREALEKAAFERLK 88
              ++ E  +A + G    +     ++ A     E L + A +R++
Sbjct: 328 CERLLEEKKVALVPGSAFLKPGFVRLSFATSI--ERLTE-ALDRIE 370


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 344,381
Number of extensions: 13294
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 11
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)