Query psy7219
Match_columns 288
No_of_seqs 236 out of 2053
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 21:09:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01257 rim_protein retinal- 100.0 1.6E-48 3.5E-53 416.1 28.6 281 1-286 1727-2009(2272)
2 KOG0059|consensus 100.0 3.5E-34 7.7E-39 292.8 19.3 278 2-286 346-635 (885)
3 TIGR01257 rim_protein retinal- 99.9 4.6E-26 9.9E-31 244.8 22.8 245 28-287 724-1001(2272)
4 COG4152 ABC-type uncharacteriz 99.8 1.8E-20 3.9E-25 161.2 5.9 70 212-285 2-71 (300)
5 COG4555 NatA ABC-type Na+ tran 99.8 2.3E-20 5E-25 156.3 4.5 73 213-288 2-74 (245)
6 COG1137 YhbG ABC-type (unclass 99.8 3.1E-20 6.8E-25 155.4 1.2 68 212-283 4-71 (243)
7 COG0411 LivG ABC-type branched 99.8 1.8E-19 3.9E-24 155.3 4.3 68 212-283 4-71 (250)
8 COG1131 CcmA ABC-type multidru 99.8 9.9E-19 2.1E-23 158.5 7.7 71 212-285 4-74 (293)
9 PRK13537 nodulation ABC transp 99.7 3.4E-18 7.4E-23 156.1 9.1 70 211-284 6-75 (306)
10 PRK13536 nodulation factor exp 99.7 3.8E-18 8.2E-23 157.7 8.8 69 211-283 40-108 (340)
11 COG3842 PotA ABC-type spermidi 99.7 4.3E-18 9.4E-23 156.1 8.6 68 211-282 4-71 (352)
12 COG4586 ABC-type uncharacteriz 99.7 2E-18 4.3E-23 150.8 5.5 57 228-284 36-92 (325)
13 COG1120 FepC ABC-type cobalami 99.7 1.1E-17 2.3E-22 147.4 8.5 67 212-282 2-68 (258)
14 TIGR03522 GldA_ABC_ATP gliding 99.7 2.2E-17 4.8E-22 150.4 8.8 68 212-283 2-69 (301)
15 COG3839 MalK ABC-type sugar tr 99.7 2E-17 4.2E-22 151.0 8.3 67 212-282 3-69 (338)
16 COG1125 OpuBA ABC-type proline 99.7 1.6E-17 3.4E-22 144.0 7.1 66 213-282 2-67 (309)
17 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 2.9E-17 6.3E-22 144.0 8.8 70 211-284 3-72 (254)
18 TIGR01288 nodI ATP-binding ABC 99.7 3.2E-17 6.9E-22 149.5 8.9 68 211-282 3-70 (303)
19 COG1135 AbcC ABC-type metal io 99.7 2.8E-17 6.1E-22 146.0 8.2 70 213-282 2-72 (339)
20 COG1124 DppF ABC-type dipeptid 99.7 3.1E-17 6.7E-22 141.5 8.1 71 212-282 3-73 (252)
21 cd03233 ABC_PDR_domain1 The pl 99.7 3.8E-17 8.2E-22 140.5 8.7 71 212-282 3-76 (202)
22 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 3.6E-17 7.8E-22 141.9 8.2 70 213-282 1-70 (218)
23 COG3638 ABC-type phosphate/pho 99.7 4.3E-17 9.4E-22 139.9 8.4 69 212-283 3-71 (258)
24 TIGR02314 ABC_MetN D-methionin 99.7 5.3E-17 1.1E-21 150.1 9.1 70 213-282 2-71 (343)
25 PRK11629 lolD lipoprotein tran 99.7 7.7E-17 1.7E-21 141.4 9.4 71 212-282 5-75 (233)
26 cd03266 ABC_NatA_sodium_export 99.7 6E-17 1.3E-21 140.5 8.5 70 213-282 2-71 (218)
27 COG1126 GlnQ ABC-type polar am 99.7 5.4E-17 1.2E-21 137.7 7.6 66 212-281 2-67 (240)
28 cd03263 ABC_subfamily_A The AB 99.7 6.1E-17 1.3E-21 140.7 8.1 68 213-282 1-68 (220)
29 cd03293 ABC_NrtD_SsuB_transpor 99.7 6.5E-17 1.4E-21 140.6 8.3 69 213-281 1-69 (220)
30 TIGR02211 LolD_lipo_ex lipopro 99.7 7.7E-17 1.7E-21 140.1 8.5 70 213-282 2-71 (221)
31 PRK13538 cytochrome c biogenes 99.7 8.2E-17 1.8E-21 138.5 8.4 66 213-282 2-67 (204)
32 PRK13540 cytochrome c biogenes 99.7 9.3E-17 2E-21 137.7 8.7 66 213-282 2-67 (200)
33 TIGR00960 3a0501s02 Type II (G 99.7 8.6E-17 1.9E-21 139.4 8.6 67 213-281 2-68 (216)
34 COG1129 MglA ABC-type sugar tr 99.7 5E-17 1.1E-21 154.4 7.6 67 211-281 7-73 (500)
35 cd03265 ABC_DrrA DrrA is the A 99.7 7.5E-17 1.6E-21 140.2 8.1 66 213-282 1-66 (220)
36 cd03261 ABC_Org_Solvent_Resist 99.7 9.9E-17 2.2E-21 140.9 8.3 66 213-282 1-66 (235)
37 cd03259 ABC_Carb_Solutes_like 99.7 8.9E-17 1.9E-21 139.0 7.8 66 213-282 1-66 (213)
38 COG1134 TagH ABC-type polysacc 99.7 1E-16 2.2E-21 138.5 7.9 52 228-279 39-90 (249)
39 cd03257 ABC_NikE_OppD_transpor 99.7 1.1E-16 2.4E-21 139.7 8.3 70 213-282 2-71 (228)
40 PRK10584 putative ABC transpor 99.7 1.6E-16 3.4E-21 138.9 9.1 72 211-282 5-76 (228)
41 cd03216 ABC_Carb_Monos_I This 99.7 1.5E-16 3.2E-21 132.3 8.5 66 213-282 1-66 (163)
42 COG1116 TauB ABC-type nitrate/ 99.7 1.4E-16 3.1E-21 138.3 8.5 65 212-280 3-67 (248)
43 cd03229 ABC_Class3 This class 99.7 1.5E-16 3.2E-21 134.1 8.4 66 213-282 1-66 (178)
44 TIGR01189 ccmA heme ABC export 99.7 1.3E-16 2.9E-21 136.5 8.2 66 213-282 1-66 (198)
45 COG0410 LivF ABC-type branched 99.7 1.2E-16 2.7E-21 136.8 7.9 68 212-283 3-70 (237)
46 TIGR02673 FtsE cell division A 99.7 1.5E-16 3.3E-21 137.6 8.5 67 213-282 2-68 (214)
47 cd03231 ABC_CcmA_heme_exporter 99.7 1.4E-16 2.9E-21 136.9 8.0 66 213-282 1-66 (201)
48 PRK13637 cbiO cobalt transport 99.7 2E-16 4.4E-21 143.1 9.3 70 213-282 3-73 (287)
49 COG4608 AppF ABC-type oligopep 99.7 1.7E-16 3.7E-21 139.4 8.4 72 211-282 3-79 (268)
50 cd03268 ABC_BcrA_bacitracin_re 99.7 1.6E-16 3.6E-21 136.9 8.2 66 213-282 1-66 (208)
51 PRK11153 metN DL-methionine tr 99.7 1.8E-16 3.9E-21 146.9 9.0 69 213-281 2-70 (343)
52 PRK13543 cytochrome c biogenes 99.7 2.1E-16 4.6E-21 137.0 8.8 68 211-282 10-77 (214)
53 cd03301 ABC_MalK_N The N-termi 99.7 1.7E-16 3.7E-21 137.2 8.2 65 213-281 1-65 (213)
54 cd03258 ABC_MetN_methionine_tr 99.7 1.7E-16 3.6E-21 139.2 8.2 70 213-282 2-71 (233)
55 cd03269 ABC_putative_ATPase Th 99.7 1.8E-16 3.8E-21 136.9 8.1 65 213-281 1-65 (210)
56 cd03296 ABC_CysA_sulfate_impor 99.7 2E-16 4.4E-21 139.3 8.6 65 213-281 3-67 (239)
57 cd03218 ABC_YhbG The ABC trans 99.7 1.5E-16 3.2E-21 139.4 7.7 66 213-282 1-66 (232)
58 PRK13641 cbiO cobalt transport 99.7 2.7E-16 5.8E-21 142.4 9.4 70 212-281 2-72 (287)
59 PRK11248 tauB taurine transpor 99.7 2.5E-16 5.3E-21 140.2 9.0 65 213-281 2-66 (255)
60 cd03224 ABC_TM1139_LivF_branch 99.7 1.9E-16 4.2E-21 137.6 7.9 66 213-282 1-66 (222)
61 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 2.4E-16 5.1E-21 138.6 8.4 66 213-282 2-67 (236)
62 PRK10247 putative ABC transpor 99.7 2.8E-16 6.2E-21 137.2 8.9 67 211-281 6-72 (225)
63 PRK09536 btuD corrinoid ABC tr 99.7 2.3E-16 5E-21 148.6 8.8 67 212-282 3-69 (402)
64 PRK13635 cbiO cobalt transport 99.7 3.5E-16 7.7E-21 141.0 9.6 69 212-282 5-73 (279)
65 PRK13539 cytochrome c biogenes 99.7 3.1E-16 6.6E-21 135.3 8.8 66 212-281 2-67 (207)
66 PRK10908 cell division protein 99.7 2.9E-16 6.3E-21 136.7 8.7 67 213-282 2-68 (222)
67 cd03262 ABC_HisP_GlnQ_permease 99.7 2.3E-16 4.9E-21 136.4 7.9 65 213-281 1-65 (213)
68 PRK13646 cbiO cobalt transport 99.7 3.6E-16 7.8E-21 141.4 9.5 70 213-282 3-73 (286)
69 cd03292 ABC_FtsE_transporter F 99.7 2.8E-16 6.1E-21 135.9 8.5 67 213-282 1-67 (214)
70 TIGR03410 urea_trans_UrtE urea 99.7 2.4E-16 5.1E-21 138.0 8.1 65 213-281 1-65 (230)
71 PRK13631 cbiO cobalt transport 99.7 3.9E-16 8.5E-21 143.3 9.8 74 209-282 18-92 (320)
72 cd03226 ABC_cobalt_CbiO_domain 99.7 1.8E-16 3.9E-21 136.4 7.2 64 215-281 2-65 (205)
73 cd03228 ABCC_MRP_Like The MRP 99.7 2.9E-16 6.2E-21 131.5 8.1 67 213-281 1-67 (171)
74 TIGR02982 heterocyst_DevA ABC 99.7 3E-16 6.4E-21 136.5 8.5 70 212-281 1-70 (220)
75 cd03247 ABCC_cytochrome_bd The 99.7 2.6E-16 5.7E-21 132.5 7.9 67 213-281 1-67 (178)
76 COG2884 FtsE Predicted ATPase 99.7 1.1E-16 2.3E-21 133.3 5.2 67 213-282 2-68 (223)
77 PRK15112 antimicrobial peptide 99.7 3.5E-16 7.5E-21 140.1 9.0 70 212-281 4-78 (267)
78 PRK09493 glnQ glutamine ABC tr 99.7 3.2E-16 6.9E-21 138.1 8.6 66 213-282 2-67 (240)
79 PRK11831 putative ABC transpor 99.6 3.7E-16 8E-21 140.1 9.1 67 211-281 6-72 (269)
80 PRK11247 ssuB aliphatic sulfon 99.6 3.8E-16 8.3E-21 139.2 9.0 68 210-281 10-77 (257)
81 PRK13652 cbiO cobalt transport 99.6 4E-16 8.6E-21 140.5 9.2 68 212-282 3-70 (277)
82 COG1136 SalX ABC-type antimicr 99.6 2.6E-16 5.6E-21 136.1 7.6 70 213-282 2-71 (226)
83 cd03225 ABC_cobalt_CbiO_domain 99.6 2.2E-16 4.8E-21 136.3 7.3 65 215-281 2-66 (211)
84 COG3845 ABC-type uncharacteriz 99.6 2.2E-16 4.8E-21 147.8 7.6 67 211-281 3-69 (501)
85 TIGR03411 urea_trans_UrtD urea 99.6 3.7E-16 8.1E-21 137.7 8.7 67 212-282 2-68 (242)
86 PRK13644 cbiO cobalt transport 99.6 4E-16 8.7E-21 140.3 9.0 66 213-281 2-67 (274)
87 COG1127 Ttg2A ABC-type transpo 99.6 3.9E-16 8.4E-21 134.4 8.2 69 210-282 6-74 (263)
88 PRK13634 cbiO cobalt transport 99.6 4.8E-16 1E-20 140.9 9.3 69 213-281 3-72 (290)
89 PRK13649 cbiO cobalt transport 99.6 4.5E-16 9.6E-21 140.3 9.0 70 213-282 3-73 (280)
90 cd03260 ABC_PstB_phosphate_tra 99.6 2.9E-16 6.3E-21 137.1 7.6 66 213-282 1-71 (227)
91 PRK13648 cbiO cobalt transport 99.6 5.7E-16 1.2E-20 138.9 9.6 68 212-281 7-74 (269)
92 cd03235 ABC_Metallic_Cations A 99.6 2E-16 4.2E-21 136.9 6.4 63 215-281 2-64 (213)
93 PRK13647 cbiO cobalt transport 99.6 4.7E-16 1E-20 139.9 9.0 68 212-282 4-71 (274)
94 PRK13632 cbiO cobalt transport 99.6 5.5E-16 1.2E-20 139.2 9.4 70 211-282 6-75 (271)
95 cd03219 ABC_Mj1267_LivG_branch 99.6 2.9E-16 6.4E-21 137.8 7.5 66 213-282 1-66 (236)
96 TIGR03608 L_ocin_972_ABC putat 99.6 2.6E-16 5.7E-21 135.3 7.0 63 215-281 1-63 (206)
97 cd03256 ABC_PhnC_transporter A 99.6 3.3E-16 7.1E-21 137.9 7.8 67 213-282 1-67 (241)
98 PRK11614 livF leucine/isoleuci 99.6 4.8E-16 1E-20 136.7 8.7 67 212-282 5-71 (237)
99 cd03230 ABC_DR_subfamily_A Thi 99.6 4.9E-16 1.1E-20 130.3 8.4 66 213-282 1-66 (173)
100 cd03295 ABC_OpuCA_Osmoprotecti 99.6 4.4E-16 9.5E-21 137.4 8.4 67 213-282 1-67 (242)
101 TIGR02769 nickel_nikE nickel i 99.6 4.9E-16 1.1E-20 139.0 8.7 70 212-281 2-76 (265)
102 cd03246 ABCC_Protease_Secretio 99.6 5.3E-16 1.1E-20 130.1 8.4 67 213-281 1-67 (173)
103 TIGR01188 drrA daunorubicin re 99.6 2.2E-16 4.8E-21 143.9 6.6 55 229-283 6-60 (302)
104 PRK11432 fbpC ferric transport 99.6 6E-16 1.3E-20 143.6 9.5 69 210-282 4-72 (351)
105 PRK10895 lipopolysaccharide AB 99.6 4.5E-16 9.7E-21 137.2 8.2 66 212-281 3-68 (241)
106 TIGR02315 ABC_phnC phosphonate 99.6 3.9E-16 8.5E-21 137.6 7.8 66 213-281 2-67 (243)
107 PRK11300 livG leucine/isoleuci 99.6 5.8E-16 1.3E-20 137.5 8.9 68 211-282 4-71 (255)
108 PRK10575 iron-hydroxamate tran 99.6 5.4E-16 1.2E-20 138.7 8.7 67 211-281 10-76 (265)
109 cd03267 ABC_NatA_like Similar 99.6 2.8E-16 6.1E-21 138.3 6.7 54 228-281 33-86 (236)
110 PRK14250 phosphate ABC transpo 99.6 5.6E-16 1.2E-20 136.7 8.6 66 212-281 3-68 (241)
111 PRK13643 cbiO cobalt transport 99.6 6.5E-16 1.4E-20 139.9 9.1 69 213-281 2-71 (288)
112 cd03232 ABC_PDR_domain2 The pl 99.6 7.5E-16 1.6E-20 131.4 8.9 71 211-281 2-74 (192)
113 PRK13548 hmuV hemin importer A 99.6 6.5E-16 1.4E-20 137.7 8.9 66 212-281 2-67 (258)
114 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 4.1E-16 8.9E-21 136.2 7.4 65 213-281 23-87 (224)
115 PRK14235 phosphate transporter 99.6 7.9E-16 1.7E-20 137.9 9.3 68 210-281 17-89 (267)
116 PRK15056 manganese/iron transp 99.6 6.2E-16 1.3E-20 138.9 8.7 67 212-281 6-72 (272)
117 cd03244 ABCC_MRP_domain2 Domai 99.6 6.1E-16 1.3E-20 134.5 8.4 68 213-282 3-70 (221)
118 cd03251 ABCC_MsbA MsbA is an e 99.6 6.1E-16 1.3E-20 135.7 8.3 67 213-281 1-67 (234)
119 PRK13633 cobalt transporter AT 99.6 7.8E-16 1.7E-20 138.8 9.2 72 211-282 3-76 (280)
120 cd03252 ABCC_Hemolysin The ABC 99.6 5.7E-16 1.2E-20 136.2 8.1 67 213-281 1-67 (237)
121 PRK13638 cbiO cobalt transport 99.6 6.1E-16 1.3E-20 138.8 8.4 65 213-281 2-66 (271)
122 PRK13636 cbiO cobalt transport 99.6 7.4E-16 1.6E-20 139.2 9.0 67 212-281 5-71 (283)
123 TIGR03265 PhnT2 putative 2-ami 99.6 7.6E-16 1.6E-20 143.1 9.1 67 212-282 4-70 (353)
124 PRK13639 cbiO cobalt transport 99.6 8E-16 1.7E-20 138.4 8.9 66 213-281 2-67 (275)
125 cd03214 ABC_Iron-Siderophores_ 99.6 7.1E-16 1.5E-20 130.2 8.0 63 215-281 2-64 (180)
126 cd03245 ABCC_bacteriocin_expor 99.6 7.5E-16 1.6E-20 133.8 8.4 67 213-281 3-69 (220)
127 TIGR00972 3a0107s01c2 phosphat 99.6 6.8E-16 1.5E-20 136.6 8.3 66 213-282 2-72 (247)
128 PRK10253 iron-enterobactin tra 99.6 7.5E-16 1.6E-20 137.8 8.6 68 210-281 5-72 (265)
129 PRK13645 cbiO cobalt transport 99.6 9.2E-16 2E-20 138.9 9.2 70 212-281 6-76 (289)
130 PRK13650 cbiO cobalt transport 99.6 9.2E-16 2E-20 138.3 9.2 70 212-282 4-73 (279)
131 cd03369 ABCC_NFT1 Domain 2 of 99.6 9.3E-16 2E-20 132.1 8.8 69 211-281 5-73 (207)
132 COG4604 CeuD ABC-type enteroch 99.6 2.1E-16 4.6E-21 132.3 4.6 68 213-284 2-69 (252)
133 TIGR03873 F420-0_ABC_ATP propo 99.6 7.2E-16 1.6E-20 137.2 8.4 66 213-282 2-67 (256)
134 PRK10851 sulfate/thiosulfate t 99.6 8.6E-16 1.9E-20 142.7 9.2 66 213-282 3-68 (353)
135 PRK14248 phosphate ABC transpo 99.6 1.2E-15 2.6E-20 136.6 9.7 69 210-282 19-92 (268)
136 PRK15079 oligopeptide ABC tran 99.6 1.1E-15 2.3E-20 141.0 9.5 71 211-281 7-86 (331)
137 PRK11650 ugpC glycerol-3-phosp 99.6 8.1E-16 1.8E-20 143.1 8.8 68 212-282 3-70 (356)
138 cd03248 ABCC_TAP TAP, the Tran 99.6 1.2E-15 2.7E-20 133.1 9.4 72 210-282 9-80 (226)
139 TIGR03005 ectoine_ehuA ectoine 99.6 7.9E-16 1.7E-20 136.6 8.2 65 213-281 1-65 (252)
140 COG4559 ABC-type hemin transpo 99.6 6.1E-16 1.3E-20 130.9 7.0 66 213-282 2-67 (259)
141 TIGR01978 sufC FeS assembly AT 99.6 6.8E-16 1.5E-20 136.0 7.7 65 213-281 1-67 (243)
142 PRK11308 dppF dipeptide transp 99.6 1.2E-15 2.6E-20 140.4 9.6 72 211-282 4-81 (327)
143 PRK11124 artP arginine transpo 99.6 1.1E-15 2.4E-20 134.8 8.8 64 213-280 3-66 (242)
144 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.6 8.7E-16 1.9E-20 135.1 8.1 68 213-281 1-68 (238)
145 cd03215 ABC_Carb_Monos_II This 99.6 1.2E-15 2.5E-20 129.1 8.6 63 212-282 4-66 (182)
146 PRK11264 putative amino-acid A 99.6 8.4E-16 1.8E-20 136.1 8.0 66 212-281 3-68 (250)
147 cd03254 ABCC_Glucan_exporter_l 99.6 9.7E-16 2.1E-20 133.9 8.2 67 212-281 2-68 (229)
148 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 1.3E-15 2.8E-20 124.1 8.3 62 213-278 1-62 (144)
149 PRK11701 phnK phosphonate C-P 99.6 1.2E-15 2.7E-20 135.8 8.9 64 212-279 6-69 (258)
150 PRK13651 cobalt transporter AT 99.6 1.4E-15 2.9E-20 138.9 9.3 68 213-280 3-71 (305)
151 PRK10619 histidine/lysine/argi 99.6 1.2E-15 2.6E-20 135.8 8.7 67 211-281 4-70 (257)
152 PRK11231 fecE iron-dicitrate t 99.6 1E-15 2.3E-20 136.1 8.2 66 212-281 2-67 (255)
153 cd03264 ABC_drug_resistance_li 99.6 8.8E-16 1.9E-20 132.6 7.6 65 213-282 1-65 (211)
154 PRK11000 maltose/maltodextrin 99.6 1.1E-15 2.4E-20 142.9 8.8 67 212-282 3-69 (369)
155 TIGR03740 galliderm_ABC gallid 99.6 1.1E-15 2.5E-20 133.1 8.2 65 213-281 1-65 (223)
156 PRK15093 antimicrobial peptide 99.6 1.2E-15 2.7E-20 140.6 8.9 71 212-282 3-77 (330)
157 PRK14242 phosphate transporter 99.6 1.4E-15 3E-20 135.0 8.7 68 210-281 4-76 (253)
158 TIGR00956 3a01205 Pleiotropic 99.6 2.8E-14 6E-19 152.6 20.2 71 212-282 759-832 (1394)
159 PRK13541 cytochrome c biogenes 99.6 1.6E-15 3.4E-20 129.6 8.7 64 213-281 2-65 (195)
160 TIGR02323 CP_lyasePhnK phospho 99.6 1.5E-15 3.3E-20 134.8 8.8 64 212-279 3-66 (253)
161 PRK11022 dppD dipeptide transp 99.6 1.3E-15 2.9E-20 140.1 8.7 71 212-282 3-77 (326)
162 PRK09473 oppD oligopeptide tra 99.6 1.6E-15 3.5E-20 139.8 9.2 72 211-282 11-85 (330)
163 cd03213 ABCG_EPDR ABCG transpo 99.6 1.7E-15 3.7E-20 129.4 8.7 71 212-282 3-77 (194)
164 cd03250 ABCC_MRP_domain1 Domai 99.6 1.4E-15 3E-20 130.8 8.2 65 213-277 1-66 (204)
165 PRK14267 phosphate ABC transpo 99.6 1.5E-15 3.3E-20 134.8 8.5 66 212-281 4-74 (253)
166 PRK09452 potA putrescine/sperm 99.6 2.1E-15 4.6E-20 141.0 9.6 68 211-282 13-80 (375)
167 cd03217 ABC_FeS_Assembly ABC-t 99.6 1.4E-15 3.1E-20 130.5 7.7 66 213-282 1-68 (200)
168 PRK13642 cbiO cobalt transport 99.6 2.2E-15 4.7E-20 135.7 9.2 70 212-282 4-73 (277)
169 cd03253 ABCC_ATM1_transporter 99.6 1.7E-15 3.7E-20 133.0 8.2 66 213-281 1-66 (236)
170 PRK13640 cbiO cobalt transport 99.6 2.5E-15 5.3E-20 135.7 9.4 69 212-282 5-76 (282)
171 PRK14259 phosphate ABC transpo 99.6 2.1E-15 4.5E-20 135.3 8.7 67 211-281 12-83 (269)
172 TIGR03258 PhnT 2-aminoethylpho 99.6 2.1E-15 4.5E-20 140.5 8.9 67 212-282 5-73 (362)
173 COG1118 CysA ABC-type sulfate/ 99.6 9.1E-16 2E-20 136.2 6.0 66 213-282 3-71 (345)
174 cd03288 ABCC_SUR2 The SUR doma 99.6 2.9E-15 6.2E-20 133.5 9.2 70 211-282 18-87 (257)
175 PRK09580 sufC cysteine desulfu 99.6 2.3E-15 4.9E-20 133.1 8.4 65 213-281 2-68 (248)
176 cd03223 ABCD_peroxisomal_ALDP 99.6 2.3E-15 5E-20 125.5 8.0 63 213-278 1-63 (166)
177 TIGR02324 CP_lyasePhnL phospho 99.6 2.4E-15 5.2E-20 131.1 8.4 65 213-277 2-69 (224)
178 cd03234 ABCG_White The White s 99.6 1.8E-15 3.8E-20 132.2 7.6 70 212-281 3-75 (226)
179 PRK14237 phosphate transporter 99.6 3E-15 6.4E-20 134.1 9.2 69 209-281 17-90 (267)
180 CHL00131 ycf16 sulfate ABC tra 99.6 2.9E-15 6.2E-20 132.9 9.0 68 211-282 6-75 (252)
181 PRK14241 phosphate transporter 99.6 2.5E-15 5.5E-20 133.8 8.3 66 212-281 4-74 (258)
182 PRK10070 glycine betaine trans 99.6 2.3E-15 5E-20 141.7 8.5 53 230-282 42-94 (400)
183 TIGR00968 3a0106s01 sulfate AB 99.6 2.8E-15 6E-20 132.0 8.3 65 213-281 1-65 (237)
184 PRK11607 potG putrescine trans 99.6 3.7E-15 8E-20 139.6 9.6 68 211-282 18-85 (377)
185 PRK10419 nikE nickel transport 99.6 3E-15 6.4E-20 134.2 8.5 70 212-281 3-77 (268)
186 PRK13547 hmuV hemin importer A 99.6 2.8E-15 6.1E-20 134.7 8.3 65 213-281 2-74 (272)
187 PRK14247 phosphate ABC transpo 99.6 2.8E-15 6E-20 132.9 8.2 67 212-282 3-74 (250)
188 cd03300 ABC_PotA_N PotA is an 99.6 2.5E-15 5.5E-20 131.8 7.8 66 213-282 1-66 (232)
189 cd03290 ABCC_SUR1_N The SUR do 99.6 3.1E-15 6.8E-20 129.9 8.2 65 214-281 2-66 (218)
190 cd03294 ABC_Pro_Gly_Bertaine T 99.6 1.1E-15 2.4E-20 137.0 5.5 64 214-281 26-89 (269)
191 PRK10744 pstB phosphate transp 99.6 3.7E-15 8.1E-20 132.9 8.8 68 210-281 11-83 (260)
192 PRK14273 phosphate ABC transpo 99.6 3.8E-15 8.2E-20 132.4 8.7 67 211-281 6-77 (254)
193 PRK14240 phosphate transporter 99.6 3.4E-15 7.4E-20 132.3 8.3 67 212-282 3-74 (250)
194 COG1122 CbiO ABC-type cobalt t 99.6 4.5E-15 9.8E-20 130.1 9.0 67 212-281 3-69 (235)
195 PRK14236 phosphate transporter 99.6 4.5E-15 9.8E-20 133.3 9.2 69 209-281 22-95 (272)
196 PRK09544 znuC high-affinity zi 99.6 4.1E-15 8.9E-20 132.1 8.7 63 212-278 4-66 (251)
197 PRK10418 nikD nickel transport 99.6 4.2E-15 9.1E-20 132.2 8.7 65 212-281 4-72 (254)
198 TIGR01166 cbiO cobalt transpor 99.6 2.2E-15 4.8E-20 128.1 6.6 54 228-281 4-57 (190)
199 PRK14268 phosphate ABC transpo 99.6 4E-15 8.6E-20 132.6 8.5 67 211-281 11-82 (258)
200 PRK14254 phosphate ABC transpo 99.6 5.3E-15 1.1E-19 133.8 9.3 67 211-281 38-109 (285)
201 PRK14274 phosphate ABC transpo 99.6 4.3E-15 9.2E-20 132.4 8.5 67 211-281 11-82 (259)
202 cd03298 ABC_ThiQ_thiamine_tran 99.6 3.9E-15 8.5E-20 128.5 8.0 64 213-282 1-64 (211)
203 PRK14272 phosphate ABC transpo 99.6 4.1E-15 8.9E-20 131.9 8.3 66 212-281 4-74 (252)
204 PRK14238 phosphate transporter 99.6 5.1E-15 1.1E-19 132.9 8.9 68 210-281 22-94 (271)
205 PRK14262 phosphate ABC transpo 99.6 4.7E-15 1E-19 131.4 8.5 67 212-282 3-74 (250)
206 TIGR01277 thiQ thiamine ABC tr 99.6 4.3E-15 9.4E-20 128.6 8.1 64 213-282 1-64 (213)
207 PRK14269 phosphate ABC transpo 99.6 4.3E-15 9.3E-20 131.4 8.3 66 213-282 3-71 (246)
208 PRK13546 teichoic acids export 99.6 4.5E-15 9.8E-20 132.8 8.4 67 212-278 4-86 (264)
209 PRK14256 phosphate ABC transpo 99.6 5.1E-15 1.1E-19 131.4 8.6 67 211-281 3-74 (252)
210 PRK10762 D-ribose transporter 99.6 4.1E-15 8.9E-20 144.5 8.4 66 212-281 4-69 (501)
211 PRK14270 phosphate ABC transpo 99.6 5.3E-15 1.1E-19 131.2 8.4 66 212-281 4-74 (251)
212 PRK14251 phosphate ABC transpo 99.6 5.8E-15 1.3E-19 130.9 8.6 66 212-281 4-74 (251)
213 PRK09984 phosphonate/organopho 99.6 6.2E-15 1.4E-19 131.6 8.7 66 212-281 4-72 (262)
214 cd03299 ABC_ModC_like Archeal 99.6 5.6E-15 1.2E-19 129.8 8.2 65 213-282 1-65 (235)
215 COG4167 SapF ABC-type antimicr 99.6 1.8E-15 4E-20 125.4 4.5 70 212-281 4-78 (267)
216 PRK14271 phosphate ABC transpo 99.6 7.9E-15 1.7E-19 132.0 9.0 66 212-281 21-91 (276)
217 PRK09700 D-allose transporter 99.6 5.4E-15 1.2E-19 144.0 8.4 67 212-282 5-71 (510)
218 COG2274 SunT ABC-type bacterio 99.6 3.7E-15 7.9E-20 148.8 7.3 70 211-282 470-539 (709)
219 cd03222 ABC_RNaseL_inhibitor T 99.6 3.4E-15 7.4E-20 125.7 6.1 61 216-281 4-64 (177)
220 PRK15439 autoinducer 2 ABC tra 99.6 7.1E-15 1.5E-19 143.1 9.1 67 212-282 11-77 (510)
221 PRK14253 phosphate ABC transpo 99.6 5.7E-15 1.2E-19 130.8 7.6 66 212-281 3-73 (249)
222 PRK14261 phosphate ABC transpo 99.6 9.2E-15 2E-19 129.8 9.0 67 212-282 6-77 (253)
223 PRK14264 phosphate ABC transpo 99.6 9.5E-15 2.1E-19 133.3 9.3 67 211-281 44-115 (305)
224 PRK14263 phosphate ABC transpo 99.6 9.5E-15 2.1E-19 130.5 9.0 67 211-281 7-78 (261)
225 PRK10771 thiQ thiamine transpo 99.6 1E-14 2.2E-19 127.9 8.8 64 213-282 2-65 (232)
226 COG1123 ATPase components of v 99.6 8.3E-15 1.8E-19 140.3 8.6 70 210-279 278-354 (539)
227 PRK14243 phosphate transporter 99.6 7.5E-15 1.6E-19 131.3 7.9 66 212-281 10-80 (264)
228 PRK14246 phosphate ABC transpo 99.6 6E-15 1.3E-19 131.4 7.2 64 210-277 8-71 (257)
229 PRK14239 phosphate transporter 99.6 1.1E-14 2.5E-19 129.0 8.9 66 212-281 5-75 (252)
230 TIGR03415 ABC_choXWV_ATP choli 99.6 8.7E-15 1.9E-19 137.0 8.4 51 228-278 36-86 (382)
231 PRK14252 phosphate ABC transpo 99.6 1.3E-14 2.8E-19 129.8 9.1 67 210-280 14-85 (265)
232 PRK14249 phosphate ABC transpo 99.6 1.3E-14 2.8E-19 128.7 8.8 66 212-281 4-74 (251)
233 PRK14260 phosphate ABC transpo 99.5 1.1E-14 2.3E-19 129.9 8.2 66 212-281 7-77 (259)
234 PRK11288 araG L-arabinose tran 99.5 1.2E-14 2.6E-19 141.2 9.3 66 212-281 4-69 (501)
235 PRK14265 phosphate ABC transpo 99.5 1.5E-14 3.2E-19 130.1 9.1 67 211-281 19-90 (274)
236 PRK13549 xylose transporter AT 99.5 9.6E-15 2.1E-19 142.1 8.4 66 212-281 5-72 (506)
237 PRK14275 phosphate ABC transpo 99.5 1E-14 2.2E-19 132.0 8.0 67 211-281 38-109 (286)
238 cd03289 ABCC_CFTR2 The CFTR su 99.5 1.2E-14 2.6E-19 130.7 8.3 67 213-282 3-69 (275)
239 PRK14245 phosphate ABC transpo 99.5 1.4E-14 3E-19 128.4 8.6 67 212-282 3-74 (250)
240 TIGR02868 CydC thiol reductant 99.5 1.1E-14 2.4E-19 142.3 8.7 69 212-283 334-402 (529)
241 PRK14255 phosphate ABC transpo 99.5 1.5E-14 3.2E-19 128.4 8.7 66 212-281 5-75 (252)
242 PRK14266 phosphate ABC transpo 99.5 1.3E-14 2.9E-19 128.5 8.3 67 212-282 3-74 (250)
243 PRK10938 putative molybdenum t 99.5 1.1E-14 2.3E-19 141.2 8.2 66 212-281 3-68 (490)
244 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 1.3E-14 2.9E-19 146.0 9.0 70 211-282 450-519 (686)
245 PRK10261 glutathione transport 99.5 1.6E-14 3.5E-19 143.7 9.2 71 211-281 312-389 (623)
246 PRK10261 glutathione transport 99.5 1.7E-14 3.6E-19 143.7 9.3 70 211-280 11-80 (623)
247 TIGR01186 proV glycine betaine 99.5 8.1E-15 1.7E-19 136.5 6.6 55 228-282 5-59 (363)
248 cd00267 ABC_ATPase ABC (ATP-bi 99.5 2.1E-14 4.6E-19 118.3 8.3 64 215-282 2-65 (157)
249 PRK10636 putative ABC transpor 99.5 1.3E-14 2.8E-19 144.7 8.3 62 213-278 2-63 (638)
250 PRK14244 phosphate ABC transpo 99.5 1.4E-14 3.1E-19 128.4 7.7 65 213-281 6-75 (251)
251 PRK15134 microcin C ABC transp 99.5 2E-14 4.4E-19 140.5 8.9 70 212-281 5-79 (529)
252 PRK14258 phosphate ABC transpo 99.5 2.3E-14 5.1E-19 127.9 8.5 66 212-281 7-77 (261)
253 COG1101 PhnK ABC-type uncharac 99.5 7.9E-15 1.7E-19 124.4 4.9 72 214-285 3-75 (263)
254 TIGR03796 NHPM_micro_ABC1 NHPM 99.5 1.7E-14 3.7E-19 145.7 8.2 70 211-282 476-545 (710)
255 TIGR02633 xylG D-xylose ABC tr 99.5 2.1E-14 4.6E-19 139.5 8.5 66 213-282 2-69 (500)
256 PRK10982 galactose/methyl gala 99.5 1.4E-14 2.9E-19 140.5 7.0 62 216-281 2-63 (491)
257 TIGR02857 CydD thiol reductant 99.5 2.2E-14 4.9E-19 140.2 8.5 69 212-282 320-388 (529)
258 COG4674 Uncharacterized ABC-ty 99.5 1.1E-14 2.4E-19 121.8 5.4 68 211-282 4-72 (249)
259 PRK11176 lipid transporter ATP 99.5 2.5E-14 5.4E-19 141.3 8.6 69 212-282 341-409 (582)
260 PF00005 ABC_tran: ABC transpo 99.5 1.4E-14 3E-19 116.3 5.4 51 232-282 1-51 (137)
261 PRK14257 phosphate ABC transpo 99.5 4.6E-14 1E-18 130.0 9.4 71 209-281 77-152 (329)
262 PRK11160 cysteine/glutathione 99.5 3.4E-14 7.4E-19 140.2 9.1 70 211-282 337-406 (574)
263 PRK10522 multidrug transporter 99.5 3.7E-14 8E-19 139.2 8.8 68 212-282 322-389 (547)
264 TIGR03375 type_I_sec_LssB type 99.5 4.5E-14 9.7E-19 142.3 9.5 69 212-282 463-531 (694)
265 KOG0058|consensus 99.5 2.7E-14 5.9E-19 139.2 7.4 71 211-282 464-534 (716)
266 PRK09700 D-allose transporter 99.5 3.1E-14 6.6E-19 138.7 7.6 64 212-281 265-328 (510)
267 PRK10938 putative molybdenum t 99.5 4.3E-14 9.4E-19 136.9 8.6 66 211-280 259-325 (490)
268 TIGR00958 3a01208 Conjugate Tr 99.5 4E-14 8.8E-19 142.9 8.6 71 211-282 477-547 (711)
269 PRK15064 ABC transporter ATP-b 99.5 4.1E-14 8.9E-19 138.4 8.3 62 213-278 2-63 (530)
270 cd03236 ABC_RNaseL_inhibitor_d 99.5 1.6E-14 3.4E-19 128.6 4.9 62 216-281 4-76 (255)
271 cd03297 ABC_ModC_molybdenum_tr 99.5 3.5E-14 7.6E-19 122.9 6.9 59 216-281 4-62 (214)
272 COG4133 CcmA ABC-type transpor 99.5 3.1E-14 6.7E-19 118.5 6.2 61 227-287 13-73 (209)
273 TIGR03269 met_CoM_red_A2 methy 99.5 5.4E-14 1.2E-18 137.3 8.9 68 211-278 278-347 (520)
274 TIGR01842 type_I_sec_PrtD type 99.5 4.6E-14 1E-18 138.5 8.5 70 211-282 315-384 (544)
275 TIGR01194 cyc_pep_trnsptr cycl 99.5 5.8E-14 1.3E-18 138.1 9.0 72 211-282 336-408 (555)
276 COG4181 Predicted ABC-type tra 99.5 2.8E-14 6.1E-19 117.1 5.6 72 211-282 5-76 (228)
277 PRK13549 xylose transporter AT 99.5 3.6E-14 7.7E-19 138.1 7.4 69 212-281 259-328 (506)
278 TIGR01193 bacteriocin_ABC ABC- 99.5 4.4E-14 9.4E-19 142.7 8.2 68 212-282 473-540 (708)
279 cd03291 ABCC_CFTR1 The CFTR su 99.5 9.5E-14 2.1E-18 125.3 9.3 61 211-277 38-98 (282)
280 PRK11147 ABC transporter ATPas 99.5 5.5E-14 1.2E-18 140.3 8.5 63 212-278 3-65 (635)
281 COG1119 ModF ABC-type molybden 99.5 5.4E-14 1.2E-18 121.7 7.0 66 211-280 30-95 (257)
282 PRK13545 tagH teichoic acids e 99.5 8.5E-14 1.8E-18 133.8 9.1 68 211-279 20-87 (549)
283 PRK11144 modC molybdate transp 99.5 7E-14 1.5E-18 130.0 8.3 62 213-281 2-63 (352)
284 PRK11819 putative ABC transpor 99.5 6.5E-14 1.4E-18 137.7 8.5 63 212-277 6-68 (556)
285 TIGR02633 xylG D-xylose ABC tr 99.5 4.9E-14 1.1E-18 136.9 7.3 69 212-281 257-326 (500)
286 TIGR02142 modC_ABC molybdenum 99.5 6.2E-14 1.3E-18 130.5 7.7 59 217-281 4-62 (354)
287 PRK15064 ABC transporter ATP-b 99.5 8.5E-14 1.9E-18 136.2 8.7 64 211-278 318-381 (530)
288 KOG0057|consensus 99.5 7.2E-14 1.6E-18 132.3 7.8 70 209-282 348-417 (591)
289 PRK10789 putative multidrug tr 99.5 7.2E-14 1.6E-18 137.8 8.2 69 212-282 313-381 (569)
290 COG4525 TauB ABC-type taurine 99.5 5.1E-14 1.1E-18 117.9 6.0 67 213-281 4-70 (259)
291 PRK10636 putative ABC transpor 99.5 9E-14 2E-18 138.7 9.0 63 211-277 311-373 (638)
292 PRK10790 putative multidrug tr 99.5 8.4E-14 1.8E-18 137.9 8.6 68 212-282 340-407 (592)
293 PRK11819 putative ABC transpor 99.5 1E-13 2.2E-18 136.4 8.9 63 211-277 323-385 (556)
294 COG4987 CydC ABC-type transpor 99.5 6.8E-14 1.5E-18 132.3 7.2 70 211-282 335-404 (573)
295 TIGR01846 type_I_sec_HlyB type 99.5 8.5E-14 1.8E-18 140.3 8.4 70 211-282 454-523 (694)
296 PRK11147 ABC transporter ATPas 99.5 1E-13 2.3E-18 138.3 9.0 62 211-276 318-379 (635)
297 COG0396 sufC Cysteine desulfur 99.5 9.8E-14 2.1E-18 118.9 7.4 68 212-282 3-72 (251)
298 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 9.6E-14 2.1E-18 136.5 8.2 64 211-277 3-66 (552)
299 TIGR01192 chvA glucan exporter 99.5 1.1E-13 2.3E-18 137.0 8.4 68 212-282 334-401 (585)
300 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 1.3E-13 2.9E-18 135.5 8.7 63 211-277 321-383 (552)
301 COG4988 CydD ABC-type transpor 99.5 7.9E-14 1.7E-18 133.3 6.8 68 212-282 320-387 (559)
302 TIGR02204 MsbA_rel ABC transpo 99.5 1.5E-13 3.2E-18 135.7 8.8 71 211-282 336-406 (576)
303 PRK10535 macrolide transporter 99.5 1.7E-13 3.7E-18 137.0 9.2 71 212-282 4-74 (648)
304 PRK15134 microcin C ABC transp 99.5 1E-13 2.3E-18 135.6 7.5 69 212-281 275-350 (529)
305 PRK10982 galactose/methyl gala 99.5 1.1E-13 2.4E-18 134.2 7.6 65 211-281 249-313 (491)
306 TIGR02203 MsbA_lipidA lipid A 99.5 1.6E-13 3.5E-18 135.2 8.5 69 211-281 329-397 (571)
307 PRK13657 cyclic beta-1,2-gluca 99.4 2E-13 4.3E-18 135.2 8.6 68 212-282 334-401 (588)
308 PRK11174 cysteine/glutathione 99.4 2E-13 4.4E-18 135.1 8.6 67 212-282 349-415 (588)
309 TIGR03269 met_CoM_red_A2 methy 99.4 1.7E-13 3.6E-18 133.8 7.8 60 213-276 1-62 (520)
310 COG1132 MdlB ABC-type multidru 99.4 2.2E-13 4.9E-18 134.2 8.8 68 212-282 328-395 (567)
311 PLN03140 ABC transporter G fam 99.4 6.4E-12 1.4E-16 134.7 19.7 70 212-281 867-947 (1470)
312 KOG0056|consensus 99.4 2.2E-13 4.7E-18 127.5 7.4 69 211-282 536-604 (790)
313 PLN03130 ABC transporter C fam 99.4 3.9E-13 8.4E-18 145.5 9.4 69 212-282 1237-1305(1622)
314 PLN03232 ABC transporter C fam 99.4 4E-13 8.7E-18 144.9 9.1 69 212-282 1234-1302(1495)
315 PLN03073 ABC transporter F fam 99.4 5.2E-13 1.1E-17 134.4 9.2 64 211-277 507-570 (718)
316 KOG0055|consensus 99.4 3.6E-13 7.8E-18 138.2 7.5 70 212-282 350-419 (1228)
317 COG0488 Uup ATPase components 99.4 4E-13 8.7E-18 130.2 7.5 62 212-277 3-64 (530)
318 PLN03211 ABC transporter G-25; 99.4 9.1E-13 2E-17 131.7 10.2 64 215-282 71-136 (659)
319 COG0444 DppD ABC-type dipeptid 99.4 6.6E-13 1.4E-17 119.3 7.8 69 213-281 2-75 (316)
320 PRK10762 D-ribose transporter 99.4 5.1E-13 1.1E-17 129.9 7.6 61 212-281 257-317 (501)
321 PRK03695 vitamin B12-transport 99.4 4.1E-13 8.8E-18 119.0 6.3 50 231-281 11-60 (248)
322 COG4619 ABC-type uncharacteriz 99.4 4.7E-13 1E-17 109.7 6.1 55 228-282 15-69 (223)
323 COG1117 PstB ABC-type phosphat 99.4 4.9E-13 1.1E-17 113.5 6.1 69 211-283 6-79 (253)
324 TIGR00957 MRP_assoc_pro multi 99.4 7.8E-13 1.7E-17 142.9 9.3 70 211-282 1283-1352(1522)
325 PTZ00243 ABC transporter; Prov 99.4 7.6E-13 1.7E-17 143.0 8.8 69 212-282 1308-1376(1560)
326 PTZ00265 multidrug resistance 99.4 5.9E-13 1.3E-17 142.9 7.9 69 212-281 382-451 (1466)
327 PRK11288 araG L-arabinose tran 99.4 5.9E-13 1.3E-17 129.4 7.0 62 212-281 257-318 (501)
328 COG1123 ATPase components of v 99.4 1.2E-12 2.7E-17 125.5 8.6 72 211-282 4-79 (539)
329 COG3840 ThiQ ABC-type thiamine 99.4 1.4E-12 3E-17 108.3 7.1 64 213-282 2-65 (231)
330 COG4615 PvdE ABC-type sideroph 99.4 1.5E-12 3.3E-17 119.2 8.1 73 211-286 321-394 (546)
331 PRK13409 putative ATPase RIL; 99.4 3.5E-13 7.6E-18 133.1 4.1 62 217-282 78-150 (590)
332 COG4618 ArpD ABC-type protease 99.3 1.7E-12 3.6E-17 122.2 7.7 71 210-282 332-402 (580)
333 COG4107 PhnK ABC-type phosphon 99.3 9.6E-13 2.1E-17 108.5 5.3 63 211-277 5-67 (258)
334 cd03237 ABC_RNaseL_inhibitor_d 99.3 1.3E-12 2.7E-17 115.8 6.1 51 230-280 8-63 (246)
335 TIGR00954 3a01203 Peroxysomal 99.3 2.4E-12 5.2E-17 129.0 8.6 64 211-277 450-513 (659)
336 PLN03073 ABC transporter F fam 99.3 2.9E-12 6.2E-17 129.0 8.8 64 211-278 176-242 (718)
337 PRK15439 autoinducer 2 ABC tra 99.3 1.6E-12 3.4E-17 126.8 6.3 61 212-281 268-328 (510)
338 PTZ00265 multidrug resistance 99.3 2.3E-12 4.9E-17 138.5 7.8 56 212-268 1165-1220(1466)
339 COG4778 PhnL ABC-type phosphon 99.3 2.7E-12 5.8E-17 105.5 6.3 66 212-277 4-72 (235)
340 COG4175 ProV ABC-type proline/ 99.3 3.5E-12 7.5E-17 114.0 7.3 71 212-282 4-94 (386)
341 COG0488 Uup ATPase components 99.3 2.8E-12 6.1E-17 124.4 7.2 65 210-277 319-383 (530)
342 PRK13409 putative ATPase RIL; 99.3 3.8E-12 8.2E-17 125.8 7.8 61 211-276 339-399 (590)
343 COG4598 HisP ABC-type histidin 99.3 1.9E-12 4.2E-17 107.2 4.5 70 211-284 5-74 (256)
344 TIGR01271 CFTR_protein cystic 99.3 5.8E-12 1.2E-16 136.0 9.2 69 211-282 1216-1284(1490)
345 KOG0055|consensus 99.3 7.6E-12 1.6E-16 128.6 7.1 70 212-282 987-1056(1228)
346 cd03238 ABC_UvrA The excision 99.2 9.3E-12 2E-16 104.7 5.4 47 228-278 7-53 (176)
347 KOG0054|consensus 99.2 2.2E-11 4.7E-16 127.6 8.4 71 210-282 1136-1206(1381)
348 TIGR00957 MRP_assoc_pro multi 99.2 3.7E-11 7.9E-16 130.1 8.8 65 211-277 635-699 (1522)
349 cd00820 PEPCK_HprK Phosphoenol 99.2 2.8E-11 6E-16 93.1 5.4 48 229-282 2-49 (107)
350 TIGR00955 3a01204 The Eye Pigm 99.2 2.3E-11 5.1E-16 121.1 6.3 55 227-281 36-93 (617)
351 TIGR00956 3a01205 Pleiotropic 99.1 4.9E-11 1.1E-15 128.0 6.3 54 228-281 73-130 (1394)
352 PLN03140 ABC transporter G fam 99.1 5.9E-11 1.3E-15 127.4 6.0 55 228-282 177-234 (1470)
353 KOG2355|consensus 99.1 4.2E-10 9.1E-15 95.3 7.4 69 209-280 10-78 (291)
354 KOG0065|consensus 99.0 5.7E-09 1.2E-13 108.1 16.4 71 211-281 786-858 (1391)
355 COG4161 ArtP ABC-type arginine 99.0 3.1E-10 6.7E-15 92.7 5.5 64 212-279 2-65 (242)
356 TIGR03238 dnd_assoc_3 dnd syst 99.0 2.1E-10 4.5E-15 108.8 4.8 51 230-282 20-71 (504)
357 COG4172 ABC-type uncharacteriz 99.0 6.4E-10 1.4E-14 102.5 7.6 70 212-282 276-352 (534)
358 PLN03130 ABC transporter C fam 99.0 5.3E-10 1.1E-14 121.5 7.9 65 212-277 614-679 (1622)
359 TIGR01271 CFTR_protein cystic 99.0 5E-10 1.1E-14 121.1 6.7 49 229-277 439-487 (1490)
360 KOG0927|consensus 99.0 3.7E-10 8E-15 107.2 4.1 68 210-280 387-454 (614)
361 COG5265 ATM1 ABC-type transpor 99.0 7.1E-10 1.5E-14 102.6 5.4 68 212-282 262-329 (497)
362 COG4172 ABC-type uncharacteriz 99.0 1.3E-09 2.8E-14 100.5 7.0 72 210-281 4-80 (534)
363 PLN03232 ABC transporter C fam 99.0 1.3E-09 2.8E-14 118.1 7.9 61 212-273 614-674 (1495)
364 PTZ00243 ABC transporter; Prov 98.9 1.2E-09 2.7E-14 118.4 6.7 50 228-277 672-721 (1560)
365 COG4136 ABC-type uncharacteriz 98.9 3E-09 6.5E-14 86.0 6.8 66 213-282 3-71 (213)
366 KOG0061|consensus 98.9 4.7E-09 1E-13 104.3 8.9 70 212-281 25-98 (613)
367 KOG0054|consensus 98.8 1E-08 2.2E-13 108.0 7.8 69 209-278 515-583 (1381)
368 cd03270 ABC_UvrA_I The excisio 98.7 6.3E-09 1.4E-13 91.0 3.8 32 228-259 7-38 (226)
369 cd03278 ABC_SMC_barmotin Barmo 98.7 6.8E-09 1.5E-13 88.9 2.6 48 233-281 14-70 (197)
370 KOG0060|consensus 98.7 4.1E-08 8.8E-13 94.2 8.0 64 210-275 431-494 (659)
371 PRK06002 fliI flagellum-specif 98.7 3.5E-08 7.7E-13 93.7 7.2 69 209-281 136-207 (450)
372 COG4148 ModC ABC-type molybdat 98.7 2.2E-08 4.7E-13 88.6 4.8 52 233-284 15-66 (352)
373 COG4138 BtuD ABC-type cobalami 98.6 3.2E-08 6.9E-13 82.1 4.7 50 231-281 14-63 (248)
374 cd03272 ABC_SMC3_euk Eukaryoti 98.6 2.5E-08 5.4E-13 87.8 3.9 41 213-263 4-44 (243)
375 COG2401 ABC-type ATPase fused 98.6 5.2E-08 1.1E-12 90.4 5.0 48 229-276 396-451 (593)
376 cd01130 VirB11-like_ATPase Typ 98.6 2.5E-08 5.4E-13 84.6 2.7 46 233-278 16-61 (186)
377 COG4178 ABC-type uncharacteriz 98.6 8.2E-08 1.8E-12 93.7 6.5 64 210-276 390-453 (604)
378 KOG0927|consensus 98.6 1.1E-07 2.3E-12 90.7 6.8 61 210-274 73-133 (614)
379 cd03274 ABC_SMC4_euk Eukaryoti 98.6 4.7E-08 1E-12 84.7 3.5 41 213-263 6-46 (212)
380 PRK07196 fliI flagellum-specif 98.6 5.6E-08 1.2E-12 92.2 4.3 53 228-281 142-197 (434)
381 KOG0066|consensus 98.5 8.9E-08 1.9E-12 89.4 4.4 61 211-274 585-645 (807)
382 COG3845 ABC-type uncharacteriz 98.5 4.2E-07 9.1E-12 86.0 9.0 67 211-280 256-322 (501)
383 PRK08149 ATP synthase SpaL; Va 98.5 1.3E-07 2.9E-12 89.5 5.3 54 228-282 138-194 (428)
384 KOG0064|consensus 98.5 3.1E-07 6.8E-12 87.5 6.6 61 212-275 481-541 (728)
385 cd03280 ABC_MutS2 MutS2 homolo 98.4 2.7E-07 5.9E-12 79.1 5.5 44 231-274 16-68 (200)
386 cd03240 ABC_Rad50 The catalyti 98.4 2E-07 4.3E-12 80.3 4.5 37 237-274 18-58 (204)
387 PRK07721 fliI flagellum-specif 98.4 2.3E-07 5E-12 88.5 5.3 51 228-279 145-195 (438)
388 COG1245 Predicted ATPase, RNas 98.4 1.5E-07 3.3E-12 88.2 3.5 51 212-272 342-397 (591)
389 cd03283 ABC_MutS-like MutS-lik 98.4 1.6E-07 3.5E-12 80.6 3.5 36 229-266 14-49 (199)
390 PRK07594 type III secretion sy 98.4 3.3E-07 7.2E-12 86.9 5.7 64 211-278 128-191 (433)
391 cd01136 ATPase_flagellum-secre 98.4 4.1E-07 8.9E-12 83.5 5.8 50 228-278 56-105 (326)
392 TIGR02858 spore_III_AA stage I 98.4 3.6E-07 7.7E-12 82.0 5.0 39 243-281 112-150 (270)
393 cd03279 ABC_sbcCD SbcCD and ot 98.4 3.6E-07 7.7E-12 79.1 4.2 55 212-274 5-61 (213)
394 PRK06793 fliI flagellum-specif 98.3 1E-06 2.2E-11 83.6 5.8 65 211-279 129-193 (432)
395 TIGR02546 III_secr_ATP type II 98.3 8E-07 1.7E-11 84.6 4.5 48 228-276 132-179 (422)
396 PRK09099 type III secretion sy 98.3 1.2E-06 2.6E-11 83.4 5.7 50 228-278 150-199 (441)
397 PRK05688 fliI flagellum-specif 98.3 7.2E-07 1.6E-11 84.9 4.1 53 228-281 155-210 (451)
398 cd03282 ABC_MSH4_euk MutS4 hom 98.3 9.4E-07 2E-11 76.1 4.3 36 228-263 15-50 (204)
399 PRK07960 fliI flagellum-specif 98.2 9.1E-07 2E-11 84.1 4.4 54 229-283 163-219 (455)
400 PRK09862 putative ATP-dependen 98.2 1.1E-06 2.4E-11 85.0 5.0 62 215-280 187-248 (506)
401 TIGR03498 FliI_clade3 flagella 98.2 1.1E-06 2.4E-11 83.2 4.8 51 228-279 127-177 (418)
402 KOG0062|consensus 98.2 1.1E-06 2.4E-11 83.5 4.6 49 212-264 80-128 (582)
403 cd03287 ABC_MSH3_euk MutS3 hom 98.2 9.2E-07 2E-11 77.1 3.7 48 229-276 18-66 (222)
404 TIGR03497 FliI_clade2 flagella 98.2 1.8E-06 4E-11 81.8 5.8 52 228-280 124-175 (413)
405 PRK06995 flhF flagellar biosyn 98.2 4.8E-07 1E-11 87.0 1.3 43 230-272 244-286 (484)
406 TIGR01026 fliI_yscN ATPase Fli 98.2 1.7E-06 3.6E-11 82.7 4.7 50 228-278 150-199 (440)
407 cd03243 ABC_MutS_homologs The 98.2 2.6E-06 5.7E-11 73.0 5.3 30 234-263 21-50 (202)
408 TIGR03496 FliI_clade1 flagella 98.2 2.7E-06 5.9E-11 80.6 5.7 63 212-278 111-173 (411)
409 PRK05922 type III secretion sy 98.2 2.9E-06 6.4E-11 80.5 5.9 49 229-278 145-193 (434)
410 PRK09270 nucleoside triphospha 98.1 1.4E-06 3E-11 76.3 3.2 39 241-279 32-74 (229)
411 COG1129 MglA ABC-type sugar tr 98.1 4.8E-06 1E-10 79.9 7.0 62 212-281 263-324 (500)
412 PF13555 AAA_29: P-loop contai 98.1 3.9E-06 8.4E-11 58.0 4.2 38 233-270 13-51 (62)
413 PRK06315 type III secretion sy 98.1 2.5E-06 5.4E-11 81.3 4.0 52 229-281 152-207 (442)
414 TIGR00554 panK_bact pantothena 98.1 1.9E-06 4.1E-11 78.0 3.0 36 243-278 63-100 (290)
415 COG4170 SapD ABC-type antimicr 98.1 4.9E-06 1.1E-10 71.1 5.2 56 213-268 4-59 (330)
416 PRK08472 fliI flagellum-specif 98.1 3.1E-06 6.7E-11 80.4 3.9 52 229-281 145-196 (434)
417 PRK14723 flhF flagellar biosyn 98.1 2.1E-06 4.5E-11 86.4 2.7 49 231-279 174-224 (767)
418 PRK10416 signal recognition pa 98.0 2.4E-06 5.2E-11 78.4 2.9 42 240-281 112-153 (318)
419 TIGR02788 VirB11 P-type DNA tr 98.0 3.7E-06 8.1E-11 77.0 3.3 42 235-276 137-178 (308)
420 cd03273 ABC_SMC2_euk Eukaryoti 98.0 3.8E-06 8.2E-11 74.5 2.9 37 242-278 25-62 (251)
421 PRK08972 fliI flagellum-specif 98.0 7.2E-06 1.6E-10 77.8 4.9 40 229-269 150-189 (444)
422 cd01854 YjeQ_engC YjeQ/EngC. 98.0 4.9E-06 1.1E-10 75.4 3.6 51 232-283 152-205 (287)
423 cd03271 ABC_UvrA_II The excisi 98.0 1E-05 2.2E-10 72.3 5.4 34 229-262 8-41 (261)
424 COG1245 Predicted ATPase, RNas 98.0 5.5E-06 1.2E-10 78.0 3.8 34 239-272 97-130 (591)
425 PLN02796 D-glycerate 3-kinase 98.0 2E-06 4.4E-11 79.1 0.9 51 231-281 81-142 (347)
426 cd00879 Sar1 Sar1 subfamily. 98.0 5.3E-06 1.2E-10 69.8 3.1 48 231-279 9-64 (190)
427 cd03284 ABC_MutS1 MutS1 homolo 97.9 7.2E-06 1.6E-10 71.3 3.4 35 229-264 18-52 (216)
428 TIGR00767 rho transcription te 97.9 2.4E-05 5.1E-10 73.5 7.0 55 212-269 130-195 (415)
429 PRK01889 GTPase RsgA; Reviewed 97.9 1.1E-05 2.3E-10 75.4 4.4 48 231-278 184-231 (356)
430 PRK04863 mukB cell division pr 97.9 1.5E-05 3.2E-10 85.9 5.9 48 232-280 18-65 (1486)
431 cd04155 Arl3 Arl3 subfamily. 97.9 1.7E-05 3.6E-10 65.5 4.7 37 244-280 16-60 (173)
432 PRK06820 type III secretion sy 97.9 2E-05 4.4E-10 75.0 5.8 45 228-273 150-194 (440)
433 PRK06936 type III secretion sy 97.9 1.8E-05 3.9E-10 75.3 5.2 42 228-270 149-190 (439)
434 PRK00098 GTPase RsgA; Reviewed 97.8 1.8E-05 4E-10 72.0 4.7 35 241-275 163-197 (298)
435 TIGR00368 Mg chelatase-related 97.8 1.1E-05 2.5E-10 78.3 3.4 54 228-281 197-250 (499)
436 PRK14721 flhF flagellar biosyn 97.8 1E-05 2.2E-10 76.8 2.9 42 239-280 188-234 (420)
437 cd03285 ABC_MSH2_euk MutS2 hom 97.8 2.1E-05 4.6E-10 68.6 4.7 35 229-263 17-51 (222)
438 TIGR00630 uvra excinuclease AB 97.8 1.9E-05 4.1E-10 81.7 5.1 30 231-260 622-651 (924)
439 cd03275 ABC_SMC1_euk Eukaryoti 97.8 1.3E-05 2.8E-10 70.9 3.1 34 243-276 23-56 (247)
440 PRK00635 excinuclease ABC subu 97.8 3E-05 6.6E-10 84.4 6.3 39 230-268 609-656 (1809)
441 TIGR00606 rad50 rad50. This fa 97.8 2.6E-05 5.6E-10 84.2 5.2 41 242-282 28-73 (1311)
442 PRK03846 adenylylsulfate kinas 97.8 2.2E-05 4.7E-10 67.2 3.5 43 240-282 22-65 (198)
443 PRK00349 uvrA excinuclease ABC 97.7 3.9E-05 8.4E-10 79.6 5.2 32 231-262 624-655 (943)
444 PRK00635 excinuclease ABC subu 97.7 3.3E-05 7.2E-10 84.1 4.9 54 215-276 938-991 (1809)
445 cd03286 ABC_MSH6_euk MutS6 hom 97.7 4.8E-05 1E-09 66.2 4.4 37 229-265 17-53 (218)
446 cd03276 ABC_SMC6_euk Eukaryoti 97.6 7.5E-05 1.6E-09 64.0 4.3 33 231-264 11-43 (198)
447 PRK08533 flagellar accessory p 97.6 5.3E-05 1.2E-09 66.4 3.4 41 238-278 20-61 (230)
448 KOG0065|consensus 97.6 0.0001 2.2E-09 77.4 5.6 58 228-285 127-187 (1391)
449 PRK14722 flhF flagellar biosyn 97.6 4.3E-05 9.3E-10 71.5 2.7 43 229-271 124-166 (374)
450 PRK10463 hydrogenase nickel in 97.5 7.7E-05 1.7E-09 67.4 4.1 41 239-279 101-141 (290)
451 KOG0062|consensus 97.5 0.00011 2.3E-09 70.3 4.3 67 210-278 360-426 (582)
452 cd01128 rho_factor Transcripti 97.5 0.00015 3.2E-09 64.4 4.9 38 235-272 9-46 (249)
453 PRK08927 fliI flagellum-specif 97.5 0.00013 2.9E-09 69.5 4.8 40 231-270 147-186 (442)
454 PLN02165 adenylate isopentenyl 97.5 0.00011 2.4E-09 67.5 3.9 43 241-283 42-88 (334)
455 TIGR01069 mutS2 MutS2 family p 97.5 4.9E-05 1.1E-09 77.6 1.7 38 234-271 313-352 (771)
456 PLN03046 D-glycerate 3-kinase; 97.4 0.0001 2.3E-09 69.5 3.7 38 244-281 214-254 (460)
457 KOG0063|consensus 97.4 0.00024 5.1E-09 66.8 5.9 44 228-271 348-396 (592)
458 TIGR02524 dot_icm_DotB Dot/Icm 97.4 0.00013 2.9E-09 68.0 4.2 40 240-279 132-174 (358)
459 PF03193 DUF258: Protein of un 97.4 0.00015 3.3E-09 59.9 3.9 34 241-274 34-67 (161)
460 TIGR00750 lao LAO/AO transport 97.4 7.3E-05 1.6E-09 68.2 2.0 46 230-275 22-67 (300)
461 PLN02318 phosphoribulokinase/u 97.4 0.00015 3.3E-09 71.1 4.1 36 243-279 66-101 (656)
462 PF13476 AAA_23: AAA domain; P 97.4 0.00018 3.9E-09 60.6 4.1 32 231-263 9-40 (202)
463 cd03281 ABC_MSH5_euk MutS5 hom 97.3 0.00014 3E-09 63.1 2.9 33 231-263 18-50 (213)
464 TIGR00455 apsK adenylylsulfate 97.3 0.00011 2.3E-09 62.0 2.0 45 238-282 14-59 (184)
465 PRK06731 flhF flagellar biosyn 97.2 0.00024 5.2E-09 63.8 3.1 47 232-278 58-114 (270)
466 PRK13477 bifunctional pantoate 97.2 0.00039 8.4E-09 67.7 4.6 47 228-275 271-320 (512)
467 PRK13851 type IV secretion sys 97.2 0.0004 8.7E-09 64.5 4.5 41 237-277 157-197 (344)
468 PRK15494 era GTPase Era; Provi 97.1 0.00033 7.1E-09 65.0 3.4 51 213-266 19-76 (339)
469 PF12698 ABC2_membrane_3: ABC- 97.1 0.00011 2.4E-09 66.3 0.0 136 2-169 209-344 (344)
470 TIGR03015 pepcterm_ATPase puta 97.1 0.00013 2.7E-09 65.0 0.0 40 230-269 30-70 (269)
471 PRK09183 transposase/IS protei 97.1 0.00024 5.3E-09 63.4 1.9 44 231-275 92-135 (259)
472 TIGR03819 heli_sec_ATPase heli 97.1 0.00068 1.5E-08 62.9 4.6 40 239-278 175-214 (340)
473 TIGR01420 pilT_fam pilus retra 97.0 0.00063 1.4E-08 63.2 4.3 41 239-279 119-160 (343)
474 TIGR03185 DNA_S_dndD DNA sulfu 97.0 0.00098 2.1E-08 67.2 5.7 43 212-262 5-48 (650)
475 smart00053 DYNc Dynamin, GTPas 97.0 0.00059 1.3E-08 60.2 3.7 31 244-274 28-60 (240)
476 TIGR00150 HI0065_YjeE ATPase, 97.0 0.00065 1.4E-08 54.4 3.3 30 239-268 19-48 (133)
477 cd03227 ABC_Class2 ABC-type Cl 97.0 0.00087 1.9E-08 55.4 4.1 34 235-268 14-47 (162)
478 TIGR02168 SMC_prok_B chromosom 97.0 0.00066 1.4E-08 72.2 4.0 27 242-268 23-52 (1179)
479 KOG0066|consensus 96.9 0.00094 2E-08 63.0 4.2 64 213-280 265-330 (807)
480 COG3950 Predicted ATP-binding 96.9 0.00056 1.2E-08 62.6 2.5 53 231-283 13-66 (440)
481 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0011 2.4E-08 57.7 4.3 42 238-279 15-63 (235)
482 PRK10246 exonuclease subunit S 96.9 0.00087 1.9E-08 71.0 4.1 43 213-263 6-51 (1047)
483 PTZ00035 Rad51 protein; Provis 96.8 0.00088 1.9E-08 62.1 3.4 42 238-279 114-162 (337)
484 TIGR00618 sbcc exonuclease Sbc 96.8 0.001 2.2E-08 70.5 4.3 32 235-267 20-55 (1042)
485 PRK00064 recF recombination pr 96.8 0.0014 2.9E-08 61.5 4.4 36 231-267 13-48 (361)
486 cd03242 ABC_RecF RecF is a rec 96.8 0.0014 3E-08 58.8 4.3 35 231-266 11-45 (270)
487 PF01926 MMR_HSR1: 50S ribosom 96.8 0.001 2.2E-08 51.4 2.9 21 245-265 2-22 (116)
488 cd03239 ABC_SMC_head The struc 96.8 0.0014 3.1E-08 55.1 4.0 20 244-263 24-43 (178)
489 TIGR00157 ribosome small subun 96.8 0.0012 2.6E-08 58.4 3.6 35 241-275 119-153 (245)
490 PF13207 AAA_17: AAA domain; P 96.8 0.0012 2.5E-08 51.3 3.0 23 244-266 1-23 (121)
491 TIGR02030 BchI-ChlI magnesium 96.7 0.0011 2.5E-08 61.3 3.3 33 242-274 25-57 (337)
492 PLN03210 Resistant to P. syrin 96.7 0.001 2.2E-08 71.3 3.2 45 234-278 199-244 (1153)
493 TIGR03499 FlhF flagellar biosy 96.7 0.0012 2.5E-08 59.8 2.8 30 240-269 192-221 (282)
494 TIGR01526 nadR_NMN_Atrans nico 96.7 0.00064 1.4E-08 62.7 1.1 38 232-269 150-189 (325)
495 cd03241 ABC_RecN RecN ATPase i 96.7 0.0023 4.9E-08 57.6 4.6 32 231-263 11-42 (276)
496 PHA02562 46 endonuclease subun 96.7 0.0018 3.9E-08 63.9 4.3 29 235-263 20-48 (562)
497 PRK12727 flagellar biosynthesi 96.7 0.0012 2.6E-08 64.2 2.9 29 239-267 347-375 (559)
498 TIGR00602 rad24 checkpoint pro 96.6 0.00088 1.9E-08 66.9 1.9 39 230-268 98-136 (637)
499 TIGR00611 recf recF protein. A 96.6 0.0017 3.7E-08 60.9 3.4 35 231-266 13-47 (365)
500 PRK13898 type IV secretion sys 96.6 0.0035 7.6E-08 64.7 5.9 44 235-278 439-482 (800)
No 1
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.6e-48 Score=416.08 Aligned_cols=281 Identities=46% Similarity=0.811 Sum_probs=239.6
Q ss_pred CEeeehHHHHHHHHHHHHHHHHhCCccccCCCCHHHHHHHHHHHHhhHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHH
Q psy7219 1 VYSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPSTAFVVLGCFNLFVGLIT 80 (288)
Q Consensus 1 ~f~~D~~~~~i~~~~~i~i~~~f~~~~f~~~~~~~~~~lll~l~g~s~i~~~Y~~S~~F~~~~~A~~~~~~~~~~~g~~~ 80 (288)
.|+||+++|+++++++++++.+|+.++|++..+++++++++++||||+||++|++||+|+++++|++.++++|+++|++.
T Consensus 1727 ~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~SflF~~~~~A~~~~~~in~~~G~~~ 1806 (2272)
T TIGR01257 1727 NFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINS 1806 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC-cchhhHHHhhcceeeeeChhhHHHHHHHHHHHH-HHHhhhhhcCCCccccccccccchhHHHHHHHH
Q psy7219 81 TLTVTVLDNLQD-DTLEYVNQYLKVIFLIFPHFCLGEGLMKLANTY-WTSSFANSYGTRLVAVNIWAWRMIGKNLTCMAC 158 (288)
Q Consensus 81 ~~~~~il~~~~~-~~~~~~~~~l~~~~~~~P~~~l~~gl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~l~~ 158 (288)
.++++++..+.. .....+++.++++|+++|+||+++|+++++.+. ....+. ..+... ..++++|+.+|+++++|++
T Consensus 1807 ~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l~~~~~~~~~~~-~~~~~~-~~~~~~~~~~g~~ll~m~~ 1884 (2272)
T TIGR01257 1807 SAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVYA-QFGEEH-SANPFQWDLIGKNLVAMAV 1884 (2272)
T ss_pred HHHHHHHHHhcccchhhhHHHHHHHHHeeCchhhhHHHHHHHHHhHHHHHHHH-hhcccc-cCCccchhhccHHHHHHHH
Confidence 888888876543 245567888999999999999999999998876 333343 334333 4578999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcCCCCCCCCCcchhHHHHHHhhhcCCCCCCeEEEEeeeEEeccccccccceeeeEEE
Q psy7219 159 HGALYSAINLSIEYKVFSRCFTRSNPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFG 238 (288)
Q Consensus 159 ~~~v~~~l~~~ie~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~~~l~~~~l~k~y~~~~~~~~av~~is~~ 238 (288)
++++|+++++++|++.+.+.+... +.+.+...+|+||++|++|+......++.+.++|++|.|++ +++.||+|+||+
T Consensus 1885 ~~iv~flLl~~ie~~~~~~~~~~~-~~~~~~~~eD~DV~~Er~rV~~~~~~~~~L~v~nLsK~Y~~--~~~~aL~~ISf~ 1961 (2272)
T TIGR01257 1885 EGVVYFLLTLLIQHHFFLSRWIAE-PAKEPIFDEDDDVAEERQRIISGGNKTDILRLNELTKVYSG--TSSPAVDRLCVG 1961 (2272)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccc-cCcCcCCCchhHHHHHHHHHhccCCCCceEEEEEEEEEECC--CCceEEEeeEEE
Confidence 999999999999987654333211 12223346899999999999876666778999999999963 236799999999
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchhhh
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 286 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~~~ 286 (288)
|++|||+||+|+||||||||+|||+|+.+|++|+|+++|+++.++.++
T Consensus 1962 I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISD 2009 (2272)
T ss_pred EcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHH
Confidence 999999999999999999999999999999999999999998655443
No 2
>KOG0059|consensus
Probab=100.00 E-value=3.5e-34 Score=292.77 Aligned_cols=278 Identities=35% Similarity=0.478 Sum_probs=212.6
Q ss_pred EeeehHHHHHHHHHHHHHHHHhCCccccCCCCHHHHHHHHHHHHhhHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHH
Q psy7219 2 YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPSTAFVVLGCFNLFVGLITT 81 (288)
Q Consensus 2 f~~D~~~~~i~~~~~i~i~~~f~~~~f~~~~~~~~~~lll~l~g~s~i~~~Y~~S~~F~~~~~A~~~~~~~~~~~g~~~~ 81 (288)
|+||+++|+++++++.+++.+|+ |...++...+++++++|+++.+|++|+.|++|+++++|++.+.++++++|+...
T Consensus 346 ~~~d~~~~~l~~~~~~~~~~~f~---~~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~~~i~~~~s~~~~~ 422 (885)
T KOG0059|consen 346 LVWDLLLYLLILLILLIFVLIFG---FFAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASVILSIYNLISGLLVF 422 (885)
T ss_pred HHHHHHHHHHHHHHHHHHhheee---cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCceeehhhHHHHHHHHHH
Confidence 68999999999999888888887 555567888999999999999999999999999999999999999999998777
Q ss_pred HHHHHHhhccCc-chhhHHHhhcceeeee-ChhhHHHHHHHHHHHH-HHHhhhhhcCCCcccc-ccccccc--hhHHHHH
Q psy7219 82 LTVTVLDNLQDD-TLEYVNQYLKVIFLIF-PHFCLGEGLMKLANTY-WTSSFANSYGTRLVAV-NIWAWRM--IGKNLTC 155 (288)
Q Consensus 82 ~~~~il~~~~~~-~~~~~~~~l~~~~~~~-P~~~l~~gl~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~--~g~~l~~ 155 (288)
+++.++....+. ........+...+.++ |.++++++..+...+. ....++ ..+...+.. .+..|.. ++.....
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (885)
T KOG0059|consen 423 FAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLE-VLGNDESFYTLLLEWLLPLIGRRYLA 501 (885)
T ss_pred HHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhhhhh-hhcccccccchhHHHHHHHHHHHHHH
Confidence 777766544433 3445566666667766 8888888887776542 112222 111111111 2455765 7888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhh---cCCCCCCCCCcchhHHHHHHhhhcCCCC---CCeEEEEeeeEEeccccccc
Q psy7219 156 MACHGALYSAINLSIEYKVFSRCFTR---SNPHPVPVSLEEDDVRKERERVERGADS---GDVLVVKRLFKIYANSKDTK 229 (288)
Q Consensus 156 l~~~~~v~~~l~~~ie~~~~~~~~~~---~~~~~~~~~~~~~~v~~e~~~~~~~~~~---~~~l~~~~l~k~y~~~~~~~ 229 (288)
+..++..+.++..+++..+..+.... ..+...+...|++|+.+|++++...... .+.+.+++++|.|+..+ +
T Consensus 502 ~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~e~~~v~~~~~~~~~~~~~~~~~L~k~y~~~~--~ 579 (885)
T KOG0059|consen 502 LVTEGVKDDLFFLLIFVPFKRRMRALTQNMLKGFEPVEVEKLDVARERNRVETLLFRSSYSSALVLNNLSKVYGGKD--G 579 (885)
T ss_pred HHHHHHHHHHHHHHhhhhhccccccccccccCCCcCcchhhHHHHHHHHhhhhhhhcccccceEEEcceeeeecchh--h
Confidence 99999999988888887654433211 1112234456788899987766554333 37899999999997522 2
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchhhh
Q psy7219 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 286 (288)
Q Consensus 230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~~~ 286 (288)
|++++|++|++|||||++|+|||||||++||+||+.+||+|+++++|+++..+.++
T Consensus 580 -Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 580 -AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDF 635 (885)
T ss_pred -hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccch
Confidence 99999999999999999999999999999999999999999999999999875443
No 3
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.94 E-value=4.6e-26 Score=244.75 Aligned_cols=245 Identities=23% Similarity=0.259 Sum_probs=158.0
Q ss_pred ccCCCCHHHHHHHHHHHHhhHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhhHHHhhcceee
Q psy7219 28 YISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPSTAFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFL 107 (288)
Q Consensus 28 f~~~~~~~~~~lll~l~g~s~i~~~Y~~S~~F~~~~~A~~~~~~~~~~~g~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 107 (288)
+...++...+++++++|+.+.|.+++++|.+|+++..|.....++.++..+ .....+ ...+. .+...++.++
T Consensus 724 ~~~~s~~~~lfl~~~~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~~l-p~~~~~---~~~~~----~~~~~~~~~s 795 (2272)
T TIGR01257 724 ILHYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYL-PHILCF---AWQDR----MTADLKTAVS 795 (2272)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHh---hcccc----cCHHHHHHHH
Confidence 334567888999999999999999999999999999998877776654322 211111 11111 1222445678
Q ss_pred eeChhhHHHHHHHHHHHHHHHhhhhhcCCCcc--cccccccc--chhHHHHHHHHHHHHHHHHHHHHHhh----------
Q psy7219 108 IFPHFCLGEGLMKLANTYWTSSFANSYGTRLV--AVNIWAWR--MIGKNLTCMACHGALYSAINLSIEYK---------- 173 (288)
Q Consensus 108 ~~P~~~l~~gl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~g~~l~~l~~~~~v~~~l~~~ie~~---------- 173 (288)
++|+.+++.|+..+...... ..|..+. ..++...+ .++..+.+|++++++|+++.||+|.-
T Consensus 796 L~sp~af~~g~~~i~~~e~~-----~~G~~w~n~~~~~~~~d~~s~~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kp 870 (2272)
T TIGR01257 796 LLSPVAFGFGTEYLVRFEEQ-----GLGLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLP 870 (2272)
T ss_pred hcCHHHHHHHHHHHHHHhhh-----CCCcccccccccccCCCCccHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCC
Confidence 99999999988766542210 0111110 00111111 36778899999999999999999941
Q ss_pred --hhhhh--hhhcCC---CCCC-C---C---CcchhHHHHH----HhhhcCC-CCCCeEEEEeeeEEeccccccccceee
Q psy7219 174 --VFSRC--FTRSNP---HPVP-V---S---LEEDDVRKER----ERVERGA-DSGDVLVVKRLFKIYANSKDTKPAVNQ 234 (288)
Q Consensus 174 --~~~~~--~~~~~~---~~~~-~---~---~~~~~v~~e~----~~~~~~~-~~~~~l~~~~l~k~y~~~~~~~~av~~ 234 (288)
|+..+ |..... .... . + .+.++...+. ...+... .....++++|++|.|++ +++++++|
T Consensus 871 w~F~~~~syW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~L~I~nLsK~y~~--~~k~aL~~ 948 (2272)
T TIGR01257 871 WYFLLQESYWLGGEGCSTREERALEKTEPLTEEMEDPEHPEGINDSFFERELPGLVPGVCVKNLVKIFEP--SGRPAVDR 948 (2272)
T ss_pred cccccchhhhcCCcccccccccccccccccccccccccccccccccccccccCCCCceEEEEeEEEEecC--CCceEEEe
Confidence 11111 211100 0000 0 0 0000100000 0011111 11247999999999953 24679999
Q ss_pred eEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchhhhc
Q psy7219 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV 287 (288)
Q Consensus 235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~~~v 287 (288)
+||++++||++||+|+|||||||++|+|+|+.+|++|+|+++|+++.++++++
T Consensus 949 lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~ 1001 (2272)
T TIGR01257 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAV 1001 (2272)
T ss_pred eEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHH
Confidence 99999999999999999999999999999999999999999999987665443
No 4
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=1.8e-20 Score=161.16 Aligned_cols=70 Identities=43% Similarity=0.682 Sum_probs=65.0
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchhh
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 285 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~~ 285 (288)
.+.+++++|+|+ ++.||+|+||.|++||++|+||+|||||||||+||.|+.+||+|+|.++|.+++.++.
T Consensus 2 ~L~ie~vtK~Fg----~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 2 ALEIEGVTKSFG----DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIK 71 (300)
T ss_pred ceEEecchhccC----ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhh
Confidence 478999999995 5789999999999999999999999999999999999999999999999999876553
No 5
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.3e-20 Score=156.34 Aligned_cols=73 Identities=38% Similarity=0.534 Sum_probs=67.6
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchhhhcC
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~~~vr 288 (288)
+.+.+++|+|++ ...|++|+||.+++||++||+|+|||||||++|||.+++.|++|.|+++|.|..++...||
T Consensus 2 l~v~~l~K~y~~---~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 2 LEVTDLTKSYGS---KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred eeeeehhhhccC---HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHh
Confidence 678999999964 2349999999999999999999999999999999999999999999999999999888775
No 6
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=3.1e-20 Score=155.39 Aligned_cols=68 Identities=44% Similarity=0.696 Sum_probs=63.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 283 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~ 283 (288)
.+.++++.|+|+ ++.+|+|+||.|++||++||+|||||||||+|.|++|+.+|++|+|.++|.||+..
T Consensus 4 ~L~a~~l~K~y~----kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~l 71 (243)
T COG1137 4 TLVAENLAKSYK----KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKL 71 (243)
T ss_pred EEEehhhhHhhC----CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccC
Confidence 588999999995 46799999999999999999999999999999999999999999999999999753
No 7
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=1.8e-19 Score=155.35 Aligned_cols=68 Identities=43% Similarity=0.625 Sum_probs=63.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 283 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~ 283 (288)
.+.+++++|.|+ +..|+||+||+|++||++||+|||||||||+|++|||.++||+|+|.++|.+|..-
T Consensus 4 lL~v~~l~k~FG----Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l 71 (250)
T COG0411 4 LLEVRGLSKRFG----GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGL 71 (250)
T ss_pred eeeeccceeecC----CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCC
Confidence 467999999995 47899999999999999999999999999999999999999999999999998653
No 8
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.76 E-value=9.9e-19 Score=158.53 Aligned_cols=71 Identities=46% Similarity=0.715 Sum_probs=64.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchhh
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 285 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~~ 285 (288)
.+.+++++|.|++ ++.|++|+||.+++||++||+||||||||||+|+|+|+.+|++|+|.++|.+..++..
T Consensus 4 ~i~~~~l~k~~~~---~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 4 VIEVRNLTKKYGG---DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPA 74 (293)
T ss_pred eeeecceEEEeCC---CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHH
Confidence 4778999999952 3689999999999999999999999999999999999999999999999999876543
No 9
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.75 E-value=3.4e-18 Score=156.06 Aligned_cols=70 Identities=41% Similarity=0.683 Sum_probs=64.5
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchh
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 284 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~ 284 (288)
..+.+++++|.|+ ++.|++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++.+..
T Consensus 6 ~~i~i~~l~k~~~----~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 6 APIDFRNVEKRYG----DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA 75 (306)
T ss_pred ceEEEEeEEEEEC----CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch
Confidence 4689999999995 357999999999999999999999999999999999999999999999999986543
No 10
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.74 E-value=3.8e-18 Score=157.75 Aligned_cols=69 Identities=39% Similarity=0.657 Sum_probs=64.0
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 283 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~ 283 (288)
..+.++|++|.|+ ++.+++|+||+|++||++||+||||||||||+++|+|+.+|++|++.++|.++.+.
T Consensus 40 ~~i~i~nl~k~y~----~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~ 108 (340)
T PRK13536 40 VAIDLAGVSKSYG----DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR 108 (340)
T ss_pred eeEEEEEEEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc
Confidence 3699999999995 35799999999999999999999999999999999999999999999999988653
No 11
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.74 E-value=4.3e-18 Score=156.06 Aligned_cols=68 Identities=34% Similarity=0.572 Sum_probs=64.3
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.+++++|.|+ +..||+|+||+|++||.+.|||||||||||++|||+|+++||+|+|.++|.++..
T Consensus 4 ~~l~i~~v~k~yg----~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~ 71 (352)
T COG3842 4 PALEIRNVSKSFG----DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD 71 (352)
T ss_pred ceEEEEeeeeecC----CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 4689999999995 4789999999999999999999999999999999999999999999999999865
No 12
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.74 E-value=2e-18 Score=150.76 Aligned_cols=57 Identities=47% Similarity=0.667 Sum_probs=52.5
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchh
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 284 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~ 284 (288)
...||+|+||+|++||++|++|+||||||||+|||||...|++|.+.++|++=.++.
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~ 92 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRR 92 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhH
Confidence 346999999999999999999999999999999999999999999999999755443
No 13
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.72 E-value=1.1e-17 Score=147.39 Aligned_cols=67 Identities=39% Similarity=0.654 Sum_probs=63.3
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++..|+ ++++++|+||++++||+++|+|||||||||++|+|+|..+|.+|+|+++|.++.+
T Consensus 2 ~L~~~~ls~~y~----~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~ 68 (258)
T COG1120 2 MLEVENLSFGYG----GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIAS 68 (258)
T ss_pred eeEEEEEEEEEC----CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhh
Confidence 478999999995 4789999999999999999999999999999999999999999999999999875
No 14
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.71 E-value=2.2e-17 Score=150.38 Aligned_cols=68 Identities=38% Similarity=0.672 Sum_probs=62.8
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 283 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~ 283 (288)
.+.+++++|.|+ ++.+++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+.
T Consensus 2 ~l~~~~l~~~~~----~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~ 69 (301)
T TIGR03522 2 SIRVSSLTKLYG----TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN 69 (301)
T ss_pred EEEEEEEEEEEC----CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC
Confidence 378999999995 35699999999999999999999999999999999999999999999999988654
No 15
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.71 E-value=2e-17 Score=151.00 Aligned_cols=67 Identities=28% Similarity=0.515 Sum_probs=62.6
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.++++|++|.|++ ..+++|+|++|++||.+.|+|||||||||++|||+|+++||+|+|+++|.++++
T Consensus 3 ~i~l~~v~K~yg~----~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~ 69 (338)
T COG3839 3 ELELKNVRKSFGS----FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD 69 (338)
T ss_pred EEEEeeeEEEcCC----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 4789999999963 229999999999999999999999999999999999999999999999999876
No 16
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.71 E-value=1.6e-17 Score=143.99 Aligned_cols=66 Identities=36% Similarity=0.607 Sum_probs=62.6
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
++.+|++|.|. ++.||+|+||+|++||.+.++||+|||||||+|||.++.+||+|+|+++|.++++
T Consensus 2 I~~~nvsk~y~----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~ 67 (309)
T COG1125 2 IEFENVSKRYG----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISD 67 (309)
T ss_pred ceeeeeehhcC----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeeccc
Confidence 57899999996 4679999999999999999999999999999999999999999999999999875
No 17
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.9e-17 Score=144.05 Aligned_cols=70 Identities=36% Similarity=0.628 Sum_probs=64.1
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchh
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 284 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~ 284 (288)
..++++|++..|++ + +|++|+||.|++||..+|+|||||||||++|.+.|+.+|++|+|.+.|.++++..
T Consensus 3 ~~i~v~nl~v~y~~---~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~ 72 (254)
T COG1121 3 PMIEVENLTVSYGN---R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR 72 (254)
T ss_pred cEEEEeeeEEEECC---E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccc
Confidence 35889999999964 3 6999999999999999999999999999999999999999999999999876554
No 18
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.70 E-value=3.2e-17 Score=149.46 Aligned_cols=68 Identities=43% Similarity=0.731 Sum_probs=62.8
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.++|++|.|++ +.+++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 3 ~~i~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 70 (303)
T TIGR01288 3 VAIDLVGVSKSYGD----KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS 70 (303)
T ss_pred cEEEEEeEEEEeCC----eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc
Confidence 36889999999953 569999999999999999999999999999999999999999999999998753
No 19
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=2.8e-17 Score=146.05 Aligned_cols=70 Identities=27% Similarity=0.596 Sum_probs=63.3
Q ss_pred EEEEeeeEEeccc-cccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANS-KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~-~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+++++++|.|... .+...|++|+||.|++||+||++|++||||||++|++.++++||+|+|.++|.++..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~ 72 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTA 72 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEeccc
Confidence 6789999999763 224579999999999999999999999999999999999999999999999988753
No 20
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.70 E-value=3.1e-17 Score=141.49 Aligned_cols=71 Identities=32% Similarity=0.568 Sum_probs=64.2
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++++|+.+...++|+|++||+|.+|||+||+|++|+||||+.++|.|+.+|++|+|.++|.++..
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~ 73 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAP 73 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCc
Confidence 58899999999764333469999999999999999999999999999999999999999999999976654
No 21
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=3.8e-17 Score=140.51 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=65.2
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC---CCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~---pt~G~i~i~g~~i~~ 282 (288)
.+.++|++|.|+.+++++.+++|+||++++||+++|+|+|||||||++++|+|+++ |++|++.++|.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~ 76 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE 76 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECcc
Confidence 47799999999875456789999999999999999999999999999999999999 899999999998754
No 22
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.70 E-value=3.6e-17 Score=141.93 Aligned_cols=70 Identities=30% Similarity=0.532 Sum_probs=61.6
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++.++.+++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~ 70 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISK 70 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhh
Confidence 3578999999632111579999999999999999999999999999999999999999999999988753
No 23
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=4.3e-17 Score=139.90 Aligned_cols=69 Identities=30% Similarity=0.550 Sum_probs=64.3
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 283 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~ 283 (288)
.++++||+|.|++ ++.|++|+||.|++||.++|+|++||||||++|+|.|+.+||+|+|.++|.++..-
T Consensus 3 ~i~~~nl~k~yp~---~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~ 71 (258)
T COG3638 3 MIEVKNLSKTYPG---GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKL 71 (258)
T ss_pred eEEEeeeeeecCC---CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhcc
Confidence 5889999999974 57899999999999999999999999999999999999999999999999887543
No 24
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.69 E-value=5.3e-17 Score=150.11 Aligned_cols=70 Identities=27% Similarity=0.512 Sum_probs=63.1
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
++++|++|.|+.+++.+++++|+||+|++||++||+|+|||||||++|+|+|+++|++|+|.++|.++.+
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~ 71 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTT 71 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence 6799999999642223579999999999999999999999999999999999999999999999998854
No 25
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=7.7e-17 Score=141.44 Aligned_cols=71 Identities=28% Similarity=0.545 Sum_probs=63.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++++++.|+.....+++++++||+|++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~ 75 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSK 75 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCc
Confidence 58899999999642112469999999999999999999999999999999999999999999999998753
No 26
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.69 E-value=6e-17 Score=140.52 Aligned_cols=70 Identities=43% Similarity=0.622 Sum_probs=62.1
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|+++.|++..+..++++|+||++++||+++|+|+|||||||++|+|+|+.+|++|+|.++|.++..
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 71 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK 71 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc
Confidence 5789999999642111269999999999999999999999999999999999999999999999998764
No 27
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.69 E-value=5.4e-17 Score=137.70 Aligned_cols=66 Identities=30% Similarity=0.527 Sum_probs=61.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|++|+|+ ++.+++|+|++|++||++.|+||+|+||||++|+|.|+++|++|+|.++|.++.
T Consensus 2 mi~i~~l~K~fg----~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~ 67 (240)
T COG1126 2 MIEIKNLSKSFG----DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVG 67 (240)
T ss_pred eEEEEeeeEEeC----CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEecc
Confidence 478999999995 478999999999999999999999999999999999999999999999997764
No 28
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.69 E-value=6.1e-17 Score=140.68 Aligned_cols=68 Identities=59% Similarity=0.912 Sum_probs=61.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++ +++++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus 1 l~~~~l~~~~~~--~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 68 (220)
T cd03263 1 LQIRNLTKTYKK--GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT 68 (220)
T ss_pred CEEEeeEEEeCC--CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccc
Confidence 467899999953 12579999999999999999999999999999999999999999999999998754
No 29
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=6.5e-17 Score=140.62 Aligned_cols=69 Identities=32% Similarity=0.560 Sum_probs=61.1
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++++++.|++....+++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 69 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT 69 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc
Confidence 357899999963211257999999999999999999999999999999999999999999999998874
No 30
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.68 E-value=7.7e-17 Score=140.13 Aligned_cols=70 Identities=30% Similarity=0.514 Sum_probs=62.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++..+.+++++++||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++.+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~ 71 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSK 71 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhh
Confidence 6789999999642222569999999999999999999999999999999999999999999999988753
No 31
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.68 E-value=8.2e-17 Score=138.50 Aligned_cols=66 Identities=29% Similarity=0.458 Sum_probs=61.1
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++ +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~ 67 (204)
T PRK13538 2 LEARNLACERDE----RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRR 67 (204)
T ss_pred eEEEEEEEEECC----EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc
Confidence 678999999953 469999999999999999999999999999999999999999999999988753
No 32
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.68 E-value=9.3e-17 Score=137.75 Aligned_cols=66 Identities=38% Similarity=0.557 Sum_probs=61.4
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|++|.|++ +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++.+
T Consensus 2 l~~~~l~~~~~~----~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~ 67 (200)
T PRK13540 2 LDVIELDFDYHD----QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK 67 (200)
T ss_pred EEEEEEEEEeCC----eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc
Confidence 678999999953 569999999999999999999999999999999999999999999999998754
No 33
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.68 E-value=8.6e-17 Score=139.44 Aligned_cols=67 Identities=30% Similarity=0.562 Sum_probs=61.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++|+++.|++ +.+++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~--~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG--GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC--CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehh
Confidence 678999999953 1246999999999999999999999999999999999999999999999999874
No 34
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.68 E-value=5e-17 Score=154.36 Aligned_cols=67 Identities=33% Similarity=0.547 Sum_probs=63.3
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..+++++++|+|+ +.+|++|+||++++||+.+|+|.||||||||+|+|+|.++|++|+|.++|.++.
T Consensus 7 ~ll~~~~i~K~Fg----gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~ 73 (500)
T COG1129 7 PLLELRGISKSFG----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVA 73 (500)
T ss_pred ceeeeecceEEcC----CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEcc
Confidence 3688999999996 478999999999999999999999999999999999999999999999999875
No 35
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=7.5e-17 Score=140.25 Aligned_cols=66 Identities=56% Similarity=0.783 Sum_probs=60.5
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|++|.|++ +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++..
T Consensus 1 i~~~~~~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~ 66 (220)
T cd03265 1 IEVENLVKKYGD----FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR 66 (220)
T ss_pred CEEEEEEEEECC----EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc
Confidence 468999999953 569999999999999999999999999999999999999999999999987753
No 36
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=9.9e-17 Score=140.85 Aligned_cols=66 Identities=24% Similarity=0.586 Sum_probs=60.5
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|+++.|+ ++++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 1 l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~ 66 (235)
T cd03261 1 IELRGLTKSFG----GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISG 66 (235)
T ss_pred CeEEEEEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc
Confidence 36889999995 2569999999999999999999999999999999999999999999999988753
No 37
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=8.9e-17 Score=139.04 Aligned_cols=66 Identities=33% Similarity=0.579 Sum_probs=60.6
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++ +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus 1 l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~ 66 (213)
T cd03259 1 LELKGLSKTYGS----VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTG 66 (213)
T ss_pred CeeeeeEEEeCC----eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCc
Confidence 367899999953 569999999999999999999999999999999999999999999999988753
No 38
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=1e-16 Score=138.54 Aligned_cols=52 Identities=42% Similarity=0.655 Sum_probs=49.5
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~ 279 (288)
.+.|++|+||++++||.+||+|+|||||||++|+|+|.++||+|++.++|.-
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v 90 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV 90 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE
Confidence 4679999999999999999999999999999999999999999999999863
No 39
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.67 E-value=1.1e-16 Score=139.71 Aligned_cols=70 Identities=31% Similarity=0.551 Sum_probs=61.9
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++.+...++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 71 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLK 71 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccc
Confidence 6789999999642111269999999999999999999999999999999999999999999999998754
No 40
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.67 E-value=1.6e-16 Score=138.94 Aligned_cols=72 Identities=24% Similarity=0.431 Sum_probs=63.3
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.++++++.|++....+++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~ 76 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQ 76 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEccc
Confidence 468899999999642111359999999999999999999999999999999999999999999999988753
No 41
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.67 E-value=1.5e-16 Score=132.33 Aligned_cols=66 Identities=38% Similarity=0.585 Sum_probs=60.9
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++ +++++++||++++||+++|+|+||+||||++++|+|+.+|++|++.++|.++..
T Consensus 1 l~~~~l~~~~~~----~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~ 66 (163)
T cd03216 1 LELRGITKRFGG----VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSF 66 (163)
T ss_pred CEEEEEEEEECC----eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCc
Confidence 368899999953 469999999999999999999999999999999999999999999999988764
No 42
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.4e-16 Score=138.26 Aligned_cols=65 Identities=28% Similarity=0.561 Sum_probs=61.8
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
.+.+++++|.|+. ..+++|+||+|++||+++|+||+||||||++|+++|+.+|++|+|.++|.++
T Consensus 3 ~l~i~~v~~~f~~----~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFGG----VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeCc----eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc
Confidence 5789999999963 6799999999999999999999999999999999999999999999999987
No 43
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=1.5e-16 Score=134.09 Aligned_cols=66 Identities=32% Similarity=0.581 Sum_probs=60.5
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++ +++++++||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 1 i~~~~l~~~~~~----~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 66 (178)
T cd03229 1 LELKNVSKRYGQ----KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTD 66 (178)
T ss_pred CEEEEEEEEECC----eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc
Confidence 357899999953 569999999999999999999999999999999999999999999999988753
No 44
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.67 E-value=1.3e-16 Score=136.52 Aligned_cols=66 Identities=27% Similarity=0.479 Sum_probs=60.5
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++ +.+++|+||.+++||++||+|+|||||||++++|+|+++|++|++.++|.++..
T Consensus 1 l~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 1 LAARNLACSRGE----RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAE 66 (198)
T ss_pred CEEEEEEEEECC----EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEccc
Confidence 367899999953 569999999999999999999999999999999999999999999999988653
No 45
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.67 E-value=1.2e-16 Score=136.83 Aligned_cols=68 Identities=38% Similarity=0.539 Sum_probs=63.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 283 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~ 283 (288)
.+.+++++-.|+ ...+++++||.+++||+++|+|+||||||||+|.|+|+.+|++|+|.++|.||+..
T Consensus 3 mL~v~~l~~~YG----~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~ 70 (237)
T COG0410 3 MLEVENLSAGYG----KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGL 70 (237)
T ss_pred ceeEEeEeeccc----ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCC
Confidence 578999999995 36799999999999999999999999999999999999999999999999999754
No 46
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.67 E-value=1.5e-16 Score=137.63 Aligned_cols=67 Identities=30% Similarity=0.529 Sum_probs=61.4
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++ ++.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus 2 l~~~~l~~~~~~---~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~ 68 (214)
T TIGR02673 2 IEFHNVSKAYPG---GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNR 68 (214)
T ss_pred EEEEeeeEEeCC---CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccc
Confidence 678999999942 2569999999999999999999999999999999999999999999999998753
No 47
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.67 E-value=1.4e-16 Score=136.87 Aligned_cols=66 Identities=26% Similarity=0.404 Sum_probs=60.5
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++ +.+++|+||.|++||++||+|+|||||||++++|+|+.+|++|++.++|.++..
T Consensus 1 l~i~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 66 (201)
T cd03231 1 LEADELTCERDG----RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDF 66 (201)
T ss_pred CEEEEEEEEeCC----ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccc
Confidence 368999999953 569999999999999999999999999999999999999999999999988753
No 48
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2e-16 Score=143.15 Aligned_cols=70 Identities=33% Similarity=0.604 Sum_probs=62.8
Q ss_pred EEEEeeeEEeccccc-cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~-~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.+++++|.|++..+ ++++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 73 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD 73 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCC
Confidence 789999999964211 2479999999999999999999999999999999999999999999999998854
No 49
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.66 E-value=1.7e-16 Score=139.45 Aligned_cols=72 Identities=35% Similarity=0.534 Sum_probs=64.2
Q ss_pred CeEEEEeeeEEeccccc-----cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKD-----TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~-----~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..++++||.|.|+.+.+ ...||+||||+|++||++||+|++||||||+-|+|+|+++||+|+|+++|.++..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~ 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh
Confidence 36889999999975321 1479999999999999999999999999999999999999999999999999753
No 50
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.66 E-value=1.6e-16 Score=136.87 Aligned_cols=66 Identities=44% Similarity=0.674 Sum_probs=60.7
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.+++++|.|+ ++++++|+||++++||+++|+|+|||||||++|+|+|+.+|++|++.++|.++.+
T Consensus 1 l~~~~l~~~~~----~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 66 (208)
T cd03268 1 LKTNDLTKTYG----KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK 66 (208)
T ss_pred CEEEEEEEEEC----CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccc
Confidence 36899999995 2579999999999999999999999999999999999999999999999998753
No 51
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=1.8e-16 Score=146.89 Aligned_cols=69 Identities=30% Similarity=0.544 Sum_probs=62.4
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++|++|.|+..++++++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 678999999963212357999999999999999999999999999999999999999999999999875
No 52
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.66 E-value=2.1e-16 Score=136.95 Aligned_cols=68 Identities=28% Similarity=0.419 Sum_probs=62.7
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.++|+++.|++ +++++++||++++||+++|+|+|||||||++|+|+|+++|++|++.++|.++..
T Consensus 10 ~~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~ 77 (214)
T PRK13543 10 PLLAAHALAFSRNE----EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR 77 (214)
T ss_pred ceEEEeeEEEecCC----ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccc
Confidence 46899999999953 469999999999999999999999999999999999999999999999988753
No 53
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.66 E-value=1.7e-16 Score=137.18 Aligned_cols=65 Identities=32% Similarity=0.606 Sum_probs=60.2
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++|+++.|++ +++++|+||++++||++||+|+|||||||++|+|+|+.+|++|++.++|.++.
T Consensus 1 i~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRFGN----VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEECC----eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 367899999953 46999999999999999999999999999999999999999999999998874
No 54
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=1.7e-16 Score=139.18 Aligned_cols=70 Identities=30% Similarity=0.584 Sum_probs=61.9
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|+++.|++..+.+++++++||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++..
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 71 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTL 71 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccc
Confidence 6789999999641111379999999999999999999999999999999999999999999999998753
No 55
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=1.8e-16 Score=136.89 Aligned_cols=65 Identities=45% Similarity=0.711 Sum_probs=60.0
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++++++.|++ +.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~----~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (210)
T cd03269 1 LEVENVTKRFGR----VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD 65 (210)
T ss_pred CEEEEEEEEECC----EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchh
Confidence 368899999952 46999999999999999999999999999999999999999999999998874
No 56
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=2e-16 Score=139.30 Aligned_cols=65 Identities=28% Similarity=0.507 Sum_probs=60.9
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++++++.|++ +++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++.
T Consensus 3 l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRFGD----FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEECC----EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 679999999953 56999999999999999999999999999999999999999999999998864
No 57
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.66 E-value=1.5e-16 Score=139.35 Aligned_cols=66 Identities=45% Similarity=0.698 Sum_probs=60.5
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|++|.|++ +.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+++++|.++..
T Consensus 1 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 66 (232)
T cd03218 1 LRAENLSKRYGK----RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITK 66 (232)
T ss_pred CeEEEEEEEeCC----EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccc
Confidence 368899999953 569999999999999999999999999999999999999999999999988743
No 58
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.7e-16 Score=142.36 Aligned_cols=70 Identities=26% Similarity=0.454 Sum_probs=62.4
Q ss_pred eEEEEeeeEEecccc-ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSK-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~-~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|++|.|++.. .++++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 72 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHIT 72 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 367999999996311 1257999999999999999999999999999999999999999999999999875
No 59
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.5e-16 Score=140.23 Aligned_cols=65 Identities=28% Similarity=0.530 Sum_probs=60.7
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++|+++.|++ +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYGG----KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeCC----eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 678999999953 56999999999999999999999999999999999999999999999998875
No 60
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.66 E-value=1.9e-16 Score=137.64 Aligned_cols=66 Identities=36% Similarity=0.491 Sum_probs=60.4
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|+++.|++ +++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.+
T Consensus 1 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 66 (222)
T cd03224 1 LEVENLNAGYGK----SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITG 66 (222)
T ss_pred CEEeeEEeecCC----eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCC
Confidence 367899999953 469999999999999999999999999999999999999999999999988743
No 61
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.66 E-value=2.4e-16 Score=138.61 Aligned_cols=66 Identities=39% Similarity=0.568 Sum_probs=61.1
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|+++.|++ +.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus 2 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~ 67 (236)
T TIGR03864 2 LEVAGLSFAYGA----RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRR 67 (236)
T ss_pred EEEEeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc
Confidence 678999999953 569999999999999999999999999999999999999999999999988753
No 62
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.66 E-value=2.8e-16 Score=137.20 Aligned_cols=67 Identities=28% Similarity=0.418 Sum_probs=62.2
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..+.++|+++.|+ ++++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus 6 ~~i~~~~l~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 72 (225)
T PRK10247 6 PLLQLQNVGYLAG----DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDIS 72 (225)
T ss_pred ceEEEeccEEeeC----CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcC
Confidence 3689999999995 356999999999999999999999999999999999999999999999998764
No 63
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.66 E-value=2.3e-16 Score=148.56 Aligned_cols=67 Identities=28% Similarity=0.551 Sum_probs=62.6
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|+++.|+ ++.+++|+||++++||++||+|||||||||++|+|+|+.+|++|+|+++|.++.+
T Consensus 3 ~L~~~nls~~y~----~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~ 69 (402)
T PRK09536 3 MIDVSDLSVEFG----DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEA 69 (402)
T ss_pred eEEEeeEEEEEC----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCc
Confidence 578999999995 3579999999999999999999999999999999999999999999999998764
No 64
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=3.5e-16 Score=141.01 Aligned_cols=69 Identities=29% Similarity=0.499 Sum_probs=63.5
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++++++.|+. +++++++|+||+|++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus 5 ~l~~~~l~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~ 73 (279)
T PRK13635 5 IIRVEHISFRYPD--AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSE 73 (279)
T ss_pred eEEEEEEEEEeCC--CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCc
Confidence 5889999999953 23569999999999999999999999999999999999999999999999998854
No 65
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.66 E-value=3.1e-16 Score=135.29 Aligned_cols=66 Identities=27% Similarity=0.456 Sum_probs=60.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|++|.|++ +.+++|+||+|++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 67 (207)
T PRK13539 2 MLEGEDLACVRGG----RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID 67 (207)
T ss_pred EEEEEeEEEEECC----eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCc
Confidence 3789999999953 46999999999999999999999999999999999999999999999998753
No 66
>PRK10908 cell division protein FtsE; Provisional
Probab=99.65 E-value=2.9e-16 Score=136.74 Aligned_cols=67 Identities=28% Similarity=0.518 Sum_probs=61.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|++|.|++ ++.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus 2 l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~ 68 (222)
T PRK10908 2 IRFEHVSKAYLG---GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITR 68 (222)
T ss_pred EEEEeeEEEecC---CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc
Confidence 678999999942 2469999999999999999999999999999999999999999999999988753
No 67
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.65 E-value=2.3e-16 Score=136.37 Aligned_cols=65 Identities=23% Similarity=0.427 Sum_probs=60.2
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++++++.|++ +++++++||++++||++||+|+|||||||++|+|+|+.+|++|++.++|.++.
T Consensus 1 l~~~~l~~~~~~----~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (213)
T cd03262 1 IEIKNLHKSFGD----FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT 65 (213)
T ss_pred CEEEEEEEEECC----eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence 367899999953 56999999999999999999999999999999999999999999999999874
No 68
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=3.6e-16 Score=141.44 Aligned_cols=70 Identities=20% Similarity=0.424 Sum_probs=62.6
Q ss_pred EEEEeeeEEecccc-ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSK-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~-~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|+++.|++.. .++++++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~ 73 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITH 73 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcc
Confidence 78999999996321 12469999999999999999999999999999999999999999999999998753
No 69
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.65 E-value=2.8e-16 Score=135.88 Aligned_cols=67 Identities=31% Similarity=0.472 Sum_probs=60.8
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++ ++.+++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.+
T Consensus 1 l~~~~l~~~~~~---~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~ 67 (214)
T cd03292 1 IEFINVTKTYPN---GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSD 67 (214)
T ss_pred CEEEEEEEEeCC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEccc
Confidence 367899999953 2469999999999999999999999999999999999999999999999998753
No 70
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.65 E-value=2.4e-16 Score=137.97 Aligned_cols=65 Identities=34% Similarity=0.456 Sum_probs=60.2
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++|+++.|++ +++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus 1 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYGQ----SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeCC----eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence 368899999953 56999999999999999999999999999999999999999999999998875
No 71
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=3.9e-16 Score=143.28 Aligned_cols=74 Identities=27% Similarity=0.443 Sum_probs=64.9
Q ss_pred CCCeEEEEeeeEEecccc-ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 209 SGDVLVVKRLFKIYANSK-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 209 ~~~~l~~~~l~k~y~~~~-~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
....+.++|+++.|+.+. .++++++|+||+|++||++||+|+|||||||++++|+|+++|++|+|+++|.++.+
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~ 92 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGD 92 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccc
Confidence 344689999999996421 12469999999999999999999999999999999999999999999999988754
No 72
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.65 E-value=1.8e-16 Score=136.39 Aligned_cols=64 Identities=33% Similarity=0.506 Sum_probs=58.7
Q ss_pred EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
++|++|.|++ ++.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 2 ~~~l~~~~~~---~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 65 (205)
T cd03226 2 IENISFSYKK---GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK 65 (205)
T ss_pred cccEEEEeCC---cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhh
Confidence 5789999953 156999999999999999999999999999999999999999999999998874
No 73
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=2.9e-16 Score=131.49 Aligned_cols=67 Identities=28% Similarity=0.499 Sum_probs=60.5
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.+++++|.|++ ++..+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+++++|.++.
T Consensus 1 l~~~~l~~~~~~--~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~ 67 (171)
T cd03228 1 IEFKNVSFSYPG--RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLR 67 (171)
T ss_pred CEEEEEEEEcCC--CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhh
Confidence 367899999964 1236999999999999999999999999999999999999999999999998874
No 74
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.65 E-value=3e-16 Score=136.55 Aligned_cols=70 Identities=24% Similarity=0.403 Sum_probs=62.8
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
++.++|+++.|+++++++.+++|+||.+++||+++|+|+|||||||++++|+|+++|++|+|+++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELY 70 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhH
Confidence 3678999999964222367999999999999999999999999999999999999999999999999874
No 75
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.65 E-value=2.6e-16 Score=132.50 Aligned_cols=67 Identities=27% Similarity=0.521 Sum_probs=60.5
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
++++++++.|++ +++++++|+||++++||+++|+|+|||||||++|+|+|+.+|++|++.++|.++.
T Consensus 1 i~~~~~~~~~~~--~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPE--QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCC--CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHH
Confidence 357899999964 2246999999999999999999999999999999999999999999999998764
No 76
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.65 E-value=1.1e-16 Score=133.28 Aligned_cols=67 Identities=31% Similarity=0.548 Sum_probs=63.0
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
++.++++|.|++ +++|++|+||.|++||..=+.||+||||||++|+|.+.++||+|+|+++|+|+.+
T Consensus 2 I~f~~V~k~Y~~---g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~ 68 (223)
T COG2884 2 IRFENVSKAYPG---GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSR 68 (223)
T ss_pred eeehhhhhhcCC---CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccc
Confidence 678899999975 4779999999999999999999999999999999999999999999999999864
No 77
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.65 E-value=3.5e-16 Score=140.14 Aligned_cols=70 Identities=37% Similarity=0.629 Sum_probs=62.8
Q ss_pred eEEEEeeeEEecccc-----ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSK-----DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~-----~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|++|.|+.+. +++++++|+||++++||++||+|+|||||||++++|+|+++|++|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 78 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH 78 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence 588999999996311 1357999999999999999999999999999999999999999999999998875
No 78
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.65 E-value=3.2e-16 Score=138.07 Aligned_cols=66 Identities=23% Similarity=0.415 Sum_probs=61.2
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++ +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|.++..
T Consensus 2 l~~~~l~~~~~~----~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 67 (240)
T PRK09493 2 IEFKNVSKHFGP----TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND 67 (240)
T ss_pred EEEEeEEEEECC----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCc
Confidence 678999999952 469999999999999999999999999999999999999999999999998753
No 79
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.65 E-value=3.7e-16 Score=140.12 Aligned_cols=67 Identities=24% Similarity=0.430 Sum_probs=62.4
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..+.++|+++.|+ ++.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus 6 ~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 72 (269)
T PRK11831 6 NLVDMRGVSFTRG----NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIP 72 (269)
T ss_pred ceEEEeCeEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence 4689999999995 356999999999999999999999999999999999999999999999998875
No 80
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.65 E-value=3.8e-16 Score=139.15 Aligned_cols=68 Identities=24% Similarity=0.513 Sum_probs=62.3
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
...+.++|+++.|++ +.+++|+||.+++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 10 ~~~l~i~~l~~~~~~----~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~ 77 (257)
T PRK11247 10 GTPLLLNAVSKRYGE----RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA 77 (257)
T ss_pred CCcEEEEEEEEEECC----cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH
Confidence 356999999999953 56999999999999999999999999999999999999999999999987753
No 81
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=4e-16 Score=140.50 Aligned_cols=68 Identities=34% Similarity=0.593 Sum_probs=62.2
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++|.|++ ++.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++..
T Consensus 3 ~l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 70 (277)
T PRK13652 3 LIETRDLCYSYSG---SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK 70 (277)
T ss_pred eEEEEEEEEEeCC---CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence 4789999999953 2469999999999999999999999999999999999999999999999998753
No 82
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.65 E-value=2.6e-16 Score=136.08 Aligned_cols=70 Identities=27% Similarity=0.520 Sum_probs=63.5
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++.|.|..+.....|++++||.|++||.++|+||+||||||++++|.|+.+||+|.+.++|.++..
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~ 71 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTK 71 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCc
Confidence 5689999999764444579999999999999999999999999999999999999999999999988753
No 83
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.65 E-value=2.2e-16 Score=136.29 Aligned_cols=65 Identities=34% Similarity=0.633 Sum_probs=59.1
Q ss_pred EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
++++++.|++ +++.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 2 ~~~l~~~~~~--~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 66 (211)
T cd03225 2 LKNLSFSYPD--GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLT 66 (211)
T ss_pred ceeEEEecCC--CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcc
Confidence 5789999953 1256999999999999999999999999999999999999999999999998875
No 84
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.65 E-value=2.2e-16 Score=147.79 Aligned_cols=67 Identities=36% Similarity=0.543 Sum_probs=63.3
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..+..++++|.|+ +..|.+|+||+|++||+-+|||.||||||||+|||.|.++|++|+|+++|++++
T Consensus 3 ~~l~~~~itK~f~----~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~ 69 (501)
T COG3845 3 PALEMRGITKRFP----GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVR 69 (501)
T ss_pred ceEEEeccEEEcC----CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEec
Confidence 4688999999996 478999999999999999999999999999999999999999999999999875
No 85
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.65 E-value=3.7e-16 Score=137.74 Aligned_cols=67 Identities=30% Similarity=0.465 Sum_probs=61.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|+++.|++ +++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 2 ~i~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~ 68 (242)
T TIGR03411 2 ILYLEGLSVSFDG----FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTG 68 (242)
T ss_pred eEEEEeeEEEcCC----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCC
Confidence 4789999999953 469999999999999999999999999999999999999999999999988753
No 86
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=4e-16 Score=140.29 Aligned_cols=66 Identities=27% Similarity=0.534 Sum_probs=61.1
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++|++|.|++ ++++++|+||+|++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus 2 l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYPD---GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcCC---CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECC
Confidence 678999999952 346999999999999999999999999999999999999999999999999875
No 87
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.65 E-value=3.9e-16 Score=134.41 Aligned_cols=69 Identities=23% Similarity=0.530 Sum_probs=64.8
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
...+++++++|.|+ ++.+++|++|+|++||++|++|++|+||||++|.|.|+.+|++|+|++.|.++.+
T Consensus 6 ~~~I~vr~v~~~fG----~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ 74 (263)
T COG1127 6 EPLIEVRGVTKSFG----DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQ 74 (263)
T ss_pred cceEEEeeeeeecC----CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhc
Confidence 45799999999995 4789999999999999999999999999999999999999999999999999864
No 88
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=4.8e-16 Score=140.87 Aligned_cols=69 Identities=22% Similarity=0.464 Sum_probs=62.3
Q ss_pred EEEEeeeEEeccccc-cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~-~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.+++++|.|++..+ ++++++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 789999999964211 256999999999999999999999999999999999999999999999999874
No 89
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=4.5e-16 Score=140.33 Aligned_cols=70 Identities=21% Similarity=0.394 Sum_probs=62.2
Q ss_pred EEEEeeeEEeccccc-cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~-~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++... .+++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~ 73 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITS 73 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc
Confidence 679999999964211 1469999999999999999999999999999999999999999999999988753
No 90
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.64 E-value=2.9e-16 Score=137.12 Aligned_cols=66 Identities=29% Similarity=0.520 Sum_probs=60.5
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC-----CCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-----KPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~-----~pt~G~i~i~g~~i~~ 282 (288)
+.++|+++.|++ +++++|+||++++||++||+|+|||||||++++|+|+. +|++|+|.++|.++.+
T Consensus 1 i~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 71 (227)
T cd03260 1 IELRDLNVYYGD----KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71 (227)
T ss_pred CEEEEEEEEcCC----ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhh
Confidence 468899999953 46999999999999999999999999999999999999 9999999999998753
No 91
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=5.7e-16 Score=138.89 Aligned_cols=68 Identities=29% Similarity=0.532 Sum_probs=62.6
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++++++.|++ +.+++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus 7 ~l~i~~l~~~~~~--~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~ 74 (269)
T PRK13648 7 IIVFKNVSFQYQS--DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAIT 74 (269)
T ss_pred eEEEEEEEEEcCC--CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 5899999999964 2246999999999999999999999999999999999999999999999999874
No 92
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.64 E-value=2e-16 Score=136.89 Aligned_cols=63 Identities=38% Similarity=0.669 Sum_probs=58.1
Q ss_pred EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
++|+++.|++ +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 2 ~~~l~~~~~~----~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~ 64 (213)
T cd03235 2 VEDLTVSYGG----HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE 64 (213)
T ss_pred cccceeEECC----EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH
Confidence 5789999953 46999999999999999999999999999999999999999999999998763
No 93
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=4.7e-16 Score=139.86 Aligned_cols=68 Identities=31% Similarity=0.482 Sum_probs=62.5
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++++++.|+. ++++++|+||.+++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 71 (274)
T PRK13647 4 IIEVEDLHFRYKD---GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNA 71 (274)
T ss_pred eEEEEEEEEEeCC---CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCC
Confidence 5889999999952 2469999999999999999999999999999999999999999999999998753
No 94
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=5.5e-16 Score=139.17 Aligned_cols=70 Identities=34% Similarity=0.561 Sum_probs=63.7
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.++|+++.|++ +++++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++..
T Consensus 6 ~~l~~~nl~~~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~ 75 (271)
T PRK13632 6 VMIKVENVSFSYPN--SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISK 75 (271)
T ss_pred eEEEEEeEEEEcCC--CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCc
Confidence 36889999999953 23579999999999999999999999999999999999999999999999998753
No 95
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.64 E-value=2.9e-16 Score=137.83 Aligned_cols=66 Identities=41% Similarity=0.673 Sum_probs=60.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|+++.|++ +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus 1 l~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 66 (236)
T cd03219 1 LEVRGLTKRFGG----LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITG 66 (236)
T ss_pred CeeeeeEEEECC----EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCC
Confidence 357899999952 469999999999999999999999999999999999999999999999988753
No 96
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.64 E-value=2.6e-16 Score=135.28 Aligned_cols=63 Identities=21% Similarity=0.458 Sum_probs=57.9
Q ss_pred EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
++|+++.|++ +++++|+||.+++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 1 i~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 63 (206)
T TIGR03608 1 LKNISKKFGD----KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETP 63 (206)
T ss_pred CcceEEEECC----EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcc
Confidence 4688999953 46999999999999999999999999999999999999999999999999853
No 97
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=3.3e-16 Score=137.88 Aligned_cols=67 Identities=36% Similarity=0.628 Sum_probs=60.7
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|+++.|++ ++++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|.++..
T Consensus 1 l~~~~l~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 67 (241)
T cd03256 1 IEVENLSKTYPN---GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINK 67 (241)
T ss_pred CEEeeEEEecCC---ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccc
Confidence 357899999953 2569999999999999999999999999999999999999999999999988753
No 98
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=4.8e-16 Score=136.67 Aligned_cols=67 Identities=33% Similarity=0.510 Sum_probs=62.1
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.+++++|.|+ ++++++++||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.+
T Consensus 5 ~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~ 71 (237)
T PRK11614 5 MLSFDKVSAHYG----KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITD 71 (237)
T ss_pred EEEEEeEEEeeC----CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCC
Confidence 588999999995 3579999999999999999999999999999999999999999999999988753
No 99
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=4.9e-16 Score=130.31 Aligned_cols=66 Identities=45% Similarity=0.756 Sum_probs=60.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++ +++++++||++++||+++|+|+|||||||++|+|+|+.+|++|++.++|.++.+
T Consensus 1 l~~~~l~~~~~~----~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~ 66 (173)
T cd03230 1 IEVRNLSKRYGK----KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK 66 (173)
T ss_pred CEEEEEEEEECC----eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccc
Confidence 357899999953 469999999999999999999999999999999999999999999999988753
No 100
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=4.4e-16 Score=137.39 Aligned_cols=67 Identities=37% Similarity=0.657 Sum_probs=60.7
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++ .+.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus 1 l~~~~l~~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 67 (242)
T cd03295 1 IEFENVTKRYGG---GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIRE 67 (242)
T ss_pred CEEEEEEEEeCC---cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCc
Confidence 357899999953 1569999999999999999999999999999999999999999999999988753
No 101
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.64 E-value=4.9e-16 Score=139.02 Aligned_cols=70 Identities=29% Similarity=0.544 Sum_probs=62.6
Q ss_pred eEEEEeeeEEecccc-----ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSK-----DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~-----~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.+++++|.|++.+ +++.+++|+||++++||++||+|+|||||||++++|+|+++|++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLY 76 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcc
Confidence 478999999996311 1357999999999999999999999999999999999999999999999998875
No 102
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.64 E-value=5.3e-16 Score=130.11 Aligned_cols=67 Identities=28% Similarity=0.558 Sum_probs=60.7
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++|+++.|++ +++++++++||.+++||+++|+|+||+||||++++|+|+.+|++|++.++|.++.
T Consensus 1 i~~~~l~~~~~~--~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 67 (173)
T cd03246 1 LEVENVSFRYPG--AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS 67 (173)
T ss_pred CEEEEEEEEcCC--CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcc
Confidence 357899999963 2356999999999999999999999999999999999999999999999998874
No 103
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.64 E-value=2.2e-16 Score=143.86 Aligned_cols=55 Identities=49% Similarity=0.728 Sum_probs=52.1
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 283 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~ 283 (288)
+++++|+||+|++||++||+|||||||||++|+|+|+.+|++|+|.++|.++...
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 60 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE 60 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC
Confidence 5799999999999999999999999999999999999999999999999987543
No 104
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=6e-16 Score=143.63 Aligned_cols=69 Identities=25% Similarity=0.568 Sum_probs=63.6
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.+.+++++|.|+ ++.+++|+||++++||+++|+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus 4 ~~~l~~~~l~~~~~----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~ 72 (351)
T PRK11432 4 KNFVVLKNITKRFG----SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH 72 (351)
T ss_pred CcEEEEEeEEEEEC----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCC
Confidence 34789999999995 3569999999999999999999999999999999999999999999999998753
No 105
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=4.5e-16 Score=137.21 Aligned_cols=66 Identities=42% Similarity=0.657 Sum_probs=61.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++++++.|++ +++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 68 (241)
T PRK10895 3 TLTAKNLAKAYKG----RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDIS 68 (241)
T ss_pred eEEEeCcEEEeCC----EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 4788999999953 56999999999999999999999999999999999999999999999998874
No 106
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.64 E-value=3.9e-16 Score=137.61 Aligned_cols=66 Identities=32% Similarity=0.594 Sum_probs=60.9
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++|+++.|+. ++++++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~---~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYPN---GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecCC---CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhh
Confidence 578999999952 356999999999999999999999999999999999999999999999998875
No 107
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=5.8e-16 Score=137.54 Aligned_cols=68 Identities=38% Similarity=0.542 Sum_probs=62.8
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.++|++|.|+ ++++++++||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 71 (255)
T PRK11300 4 PLLSVSGLMMRFG----GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEG 71 (255)
T ss_pred ceEEEeeEEEEEC----CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCC
Confidence 3688999999995 3579999999999999999999999999999999999999999999999998753
No 108
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=5.4e-16 Score=138.72 Aligned_cols=67 Identities=22% Similarity=0.415 Sum_probs=62.4
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..+.++++++.|++ +.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 10 ~~l~i~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 76 (265)
T PRK10575 10 TTFALRNVSFRVPG----RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLE 76 (265)
T ss_pred ceEEEeeEEEEECC----EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehh
Confidence 46899999999953 46999999999999999999999999999999999999999999999998874
No 109
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.64 E-value=2.8e-16 Score=138.25 Aligned_cols=54 Identities=44% Similarity=0.684 Sum_probs=51.0
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+++++|+||.+++||+++|+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~ 86 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPW 86 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcc
Confidence 357999999999999999999999999999999999999999999999998754
No 110
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=5.6e-16 Score=136.72 Aligned_cols=66 Identities=26% Similarity=0.400 Sum_probs=61.3
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|+++.|++ +++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 68 (241)
T PRK14250 3 EIEFKEVSYSSFG----KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIK 68 (241)
T ss_pred eEEEEeEEEEeCC----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhh
Confidence 3789999999953 46999999999999999999999999999999999999999999999998874
No 111
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=6.5e-16 Score=139.88 Aligned_cols=69 Identities=25% Similarity=0.425 Sum_probs=61.9
Q ss_pred EEEEeeeEEecccc-ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSK-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~-~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++++++.|+... ..+++++|+||.|++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 67899999996321 1236999999999999999999999999999999999999999999999999874
No 112
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=7.5e-16 Score=131.39 Aligned_cols=71 Identities=28% Similarity=0.324 Sum_probs=62.1
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC--CCCCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~--~pt~G~i~i~g~~i~ 281 (288)
..+.++++++.|++.++++++++|+||++++||+++|+|+|||||||++|+|+|+. +|++|++.++|.++.
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~ 74 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD 74 (192)
T ss_pred cEEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH
Confidence 35789999999964222357999999999999999999999999999999999986 489999999998874
No 113
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.63 E-value=6.5e-16 Score=137.70 Aligned_cols=66 Identities=27% Similarity=0.518 Sum_probs=61.2
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|++|.|++ +.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~ 67 (258)
T PRK13548 2 MLEARNLSVRLGG----RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLA 67 (258)
T ss_pred eEEEEeEEEEeCC----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcc
Confidence 3779999999953 56999999999999999999999999999999999999999999999998764
No 114
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.63 E-value=4.1e-16 Score=136.17 Aligned_cols=65 Identities=35% Similarity=0.461 Sum_probs=59.2
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++++++.|+ ++++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|+++.
T Consensus 23 l~~~~~~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~ 87 (224)
T cd03220 23 LGILGRKGEVG----EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS 87 (224)
T ss_pred hhhhhhhhhcC----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEch
Confidence 66778888884 367999999999999999999999999999999999999999999999998753
No 115
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=7.9e-16 Score=137.85 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=62.3
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 281 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~ 281 (288)
...+.++|+++.|++ +++++|+||+|++||++||+|+|||||||++++|+|+.+| ++|+|+++|.++.
T Consensus 17 ~~~l~~~nl~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 17 EIKMRARDVSVFYGE----KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CceEEEEeEEEEECC----EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 447999999999953 4699999999999999999999999999999999999975 8999999999875
No 116
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.63 E-value=6.2e-16 Score=138.90 Aligned_cols=67 Identities=33% Similarity=0.532 Sum_probs=61.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|+++.|++ ++++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 6 ~l~~~~l~~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 72 (272)
T PRK15056 6 GIVVNDVTVTWRN---GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR 72 (272)
T ss_pred eEEEEeEEEEecC---CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhH
Confidence 5889999999952 356999999999999999999999999999999999999999999999998864
No 117
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.63 E-value=6.1e-16 Score=134.49 Aligned_cols=68 Identities=25% Similarity=0.435 Sum_probs=62.2
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|+++.|+. +++++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.+
T Consensus 3 l~~~~l~~~~~~--~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 70 (221)
T cd03244 3 IEFKNVSLRYRP--NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISK 70 (221)
T ss_pred EEEEEEEEecCC--CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHh
Confidence 689999999964 23579999999999999999999999999999999999999999999999988753
No 118
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=6.1e-16 Score=135.66 Aligned_cols=67 Identities=27% Similarity=0.472 Sum_probs=60.6
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++++++.|++ +++++++|+||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++.
T Consensus 1 i~~~~l~~~~~~--~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 67 (234)
T cd03251 1 VEFKNVTFRYPG--DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVR 67 (234)
T ss_pred CEEEEEEEEeCC--CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhh
Confidence 368899999964 2236999999999999999999999999999999999999999999999998764
No 119
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=7.8e-16 Score=138.82 Aligned_cols=72 Identities=28% Similarity=0.499 Sum_probs=64.0
Q ss_pred CeEEEEeeeEEecccc--ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSK--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~--~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.++|++|.|++.. +++++++|+||+|++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~ 76 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSD 76 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccc
Confidence 3588999999996421 13579999999999999999999999999999999999999999999999998753
No 120
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.63 E-value=5.7e-16 Score=136.15 Aligned_cols=67 Identities=25% Similarity=0.450 Sum_probs=60.7
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++|+++.|+. +++++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~--~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP--DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC--CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehH
Confidence 357899999953 2357999999999999999999999999999999999999999999999998864
No 121
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=6.1e-16 Score=138.83 Aligned_cols=65 Identities=26% Similarity=0.530 Sum_probs=60.8
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++|+++.|++ +.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQD----EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcCC----cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcc
Confidence 678999999953 56999999999999999999999999999999999999999999999999874
No 122
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=7.4e-16 Score=139.18 Aligned_cols=67 Identities=36% Similarity=0.575 Sum_probs=62.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|+++.|++ ++.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|++.++|.++.
T Consensus 5 ~l~~~~l~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~ 71 (283)
T PRK13636 5 ILKVEELNYNYSD---GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPID 71 (283)
T ss_pred eEEEEeEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECC
Confidence 6889999999952 356999999999999999999999999999999999999999999999999874
No 123
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.63 E-value=7.6e-16 Score=143.11 Aligned_cols=67 Identities=31% Similarity=0.511 Sum_probs=62.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++|.|++ +.+++|+||++++||+++|+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 4 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~ 70 (353)
T TIGR03265 4 YLSIDNIRKRFGA----FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITR 70 (353)
T ss_pred EEEEEEEEEEeCC----eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCC
Confidence 5889999999953 569999999999999999999999999999999999999999999999998753
No 124
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=8e-16 Score=138.39 Aligned_cols=66 Identities=38% Similarity=0.616 Sum_probs=61.2
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++|+++.|++ ++++++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++.
T Consensus 2 l~~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYPD---GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECc
Confidence 678999999953 346999999999999999999999999999999999999999999999999874
No 125
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.63 E-value=7.1e-16 Score=130.15 Aligned_cols=63 Identities=35% Similarity=0.629 Sum_probs=58.8
Q ss_pred EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+++++|.|++ +++++++||++++||+++|+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus 2 ~~~l~~~~~~----~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~ 64 (180)
T cd03214 2 VENLSVGYGG----RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA 64 (180)
T ss_pred eeEEEEEECC----eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 6789999953 46999999999999999999999999999999999999999999999999875
No 126
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.63 E-value=7.5e-16 Score=133.83 Aligned_cols=67 Identities=33% Similarity=0.575 Sum_probs=61.4
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.+++++|.|++ +++.+++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus 3 l~~~~l~~~~~~--~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN--QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC--CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhH
Confidence 679999999953 2356999999999999999999999999999999999999999999999998764
No 127
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.63 E-value=6.8e-16 Score=136.56 Aligned_cols=66 Identities=23% Similarity=0.412 Sum_probs=61.1
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-----CceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-----~G~i~i~g~~i~~ 282 (288)
+.++|+++.|++ +.+++|+||++++||++||+|+|||||||++++|+|+.+|+ +|+|.++|.++.+
T Consensus 2 l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~ 72 (247)
T TIGR00972 2 IEIENLNLFYGE----KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72 (247)
T ss_pred EEEEEEEEEECC----eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccc
Confidence 678999999953 46999999999999999999999999999999999999998 9999999998753
No 128
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.63 E-value=7.5e-16 Score=137.80 Aligned_cols=68 Identities=21% Similarity=0.381 Sum_probs=63.0
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
...+.+++++|.|++ +.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 5 ~~~l~i~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 72 (265)
T PRK10253 5 VARLRGEQLTLGYGK----YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQ 72 (265)
T ss_pred ccEEEEEEEEEEECC----EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhh
Confidence 357899999999953 46999999999999999999999999999999999999999999999998874
No 129
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=9.2e-16 Score=138.93 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=62.3
Q ss_pred eEEEEeeeEEecccc-ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSK-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~-~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|++|.|+++. ...++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 76 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIP 76 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcc
Confidence 488999999996421 0135999999999999999999999999999999999999999999999998874
No 130
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=9.2e-16 Score=138.29 Aligned_cols=70 Identities=30% Similarity=0.565 Sum_probs=63.1
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|+++.|++. +.+.+++|+||+|++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus 4 ~l~~~~l~~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 73 (279)
T PRK13650 4 IIEVKNLTFKYKED-QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTE 73 (279)
T ss_pred eEEEEeEEEEcCCC-CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCc
Confidence 58899999999632 12469999999999999999999999999999999999999999999999998853
No 131
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.63 E-value=9.3e-16 Score=132.13 Aligned_cols=69 Identities=30% Similarity=0.439 Sum_probs=62.8
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..+.++++++.|+. ..+++++|+||.+++||+++|+|+||+||||++++|+|+.+|++|++.++|.++.
T Consensus 5 ~~l~~~~l~~~~~~--~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 73 (207)
T cd03369 5 GEIEVENLSVRYAP--DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDIS 73 (207)
T ss_pred CeEEEEEEEEEeCC--CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhH
Confidence 45889999999964 2247999999999999999999999999999999999999999999999998874
No 132
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=2.1e-16 Score=132.26 Aligned_cols=68 Identities=25% Similarity=0.474 Sum_probs=63.2
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchh
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 284 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~ 284 (288)
+.++|++|.|+ ++++++|+|+++++|.+.+++|||||||||+++|++.+.++++|+++++|+++.+-.
T Consensus 2 I~i~nv~K~y~----~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~ 69 (252)
T COG4604 2 ITIENVSKSYG----TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTP 69 (252)
T ss_pred eeehhhhHhhC----CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCC
Confidence 57899999995 578999999999999999999999999999999999999999999999999986543
No 133
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.63 E-value=7.2e-16 Score=137.16 Aligned_cols=66 Identities=27% Similarity=0.479 Sum_probs=61.1
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|+++.|++ +.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++.+
T Consensus 2 l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~ 67 (256)
T TIGR03873 2 LRLSRVSWSAGG----RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHG 67 (256)
T ss_pred ceEEeEEEEECC----EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEccc
Confidence 578999999953 569999999999999999999999999999999999999999999999988753
No 134
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.63 E-value=8.6e-16 Score=142.74 Aligned_cols=66 Identities=26% Similarity=0.480 Sum_probs=61.6
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.+++++|.|++ +.+++|+||++++||+++|+|+|||||||++|+|+|+.+|++|+|+++|.++..
T Consensus 3 L~i~~l~~~~~~----~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~ 68 (353)
T PRK10851 3 IEIANIKKSFGR----TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR 68 (353)
T ss_pred EEEEEEEEEeCC----eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 789999999953 569999999999999999999999999999999999999999999999998753
No 135
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.2e-15 Score=136.64 Aligned_cols=69 Identities=29% Similarity=0.406 Sum_probs=62.1
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEccccccc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD 282 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~~ 282 (288)
...+.++|+++.|+ ++.+++|+||++++||++||+|+|||||||++|+|+|+.+ |++|++.++|.++..
T Consensus 19 ~~~l~~~~l~~~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 19 EHILEVKDLSIYYG----EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred CceEEEEEEEEEeC----CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 34689999999995 3569999999999999999999999999999999999864 799999999998753
No 136
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.63 E-value=1.1e-15 Score=141.03 Aligned_cols=71 Identities=25% Similarity=0.396 Sum_probs=63.8
Q ss_pred CeEEEEeeeEEecccc---------ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSK---------DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~---------~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..+.++||+|.|...+ +...+++|+||+|++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 4689999999996321 1256999999999999999999999999999999999999999999999999875
No 137
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=8.1e-16 Score=143.09 Aligned_cols=68 Identities=26% Similarity=0.471 Sum_probs=62.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.+++++|.|++ ++.+++|+||++++||+++|+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 3 ~l~i~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~ 70 (356)
T PRK11650 3 GLKLQAVRKSYDG---KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNE 70 (356)
T ss_pred EEEEEeEEEEeCC---CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCC
Confidence 4789999999942 3569999999999999999999999999999999999999999999999998753
No 138
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.62 E-value=1.2e-15 Score=133.05 Aligned_cols=72 Identities=21% Similarity=0.399 Sum_probs=64.0
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
...+.++++++.|++. +++++++++||.+++||++||+|+|||||||++++|+|+.+|++|++.++|.++.+
T Consensus 9 ~~~l~~~~l~~~~~~~-~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 80 (226)
T cd03248 9 KGIVKFQNVTFAYPTR-PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQ 80 (226)
T ss_pred CceEEEEEEEEEeCCC-CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHH
Confidence 3468999999999642 12469999999999999999999999999999999999999999999999988743
No 139
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.62 E-value=7.9e-16 Score=136.57 Aligned_cols=65 Identities=22% Similarity=0.361 Sum_probs=60.1
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++|+++.|++ +++++|+||++++||++||+|+|||||||++|+|+|+.+|++|++.++|.++.
T Consensus 1 i~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFGI----LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeCC----eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 368899999953 46999999999999999999999999999999999999999999999998874
No 140
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=6.1e-16 Score=130.86 Aligned_cols=66 Identities=29% Similarity=0.496 Sum_probs=59.8
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
++.+|++..-. ++..++++||+.++||..+|+|||||||||++|.|+|+..|++|++.++|.++.+
T Consensus 2 i~a~nls~~~~----Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~ 67 (259)
T COG4559 2 IRAENLSYSLA----GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNS 67 (259)
T ss_pred eeeeeeEEEee----cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhh
Confidence 56778876653 4679999999999999999999999999999999999999999999999998754
No 141
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.62 E-value=6.8e-16 Score=136.01 Aligned_cols=65 Identities=28% Similarity=0.436 Sum_probs=59.4
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC--CCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~--~pt~G~i~i~g~~i~ 281 (288)
+.++|++|.|++ +.+++|+||.+++||++||+|+|||||||++|+|+|+. +|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVED----KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEECC----EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 468899999953 56999999999999999999999999999999999995 799999999998874
No 142
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.2e-15 Score=140.42 Aligned_cols=72 Identities=28% Similarity=0.449 Sum_probs=64.2
Q ss_pred CeEEEEeeeEEeccccc------cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKD------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~------~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.++|++|.|+.+.+ ...+++|+||+|++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~ 81 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK 81 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCc
Confidence 46899999999964211 2579999999999999999999999999999999999999999999999998753
No 143
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.1e-15 Score=134.82 Aligned_cols=64 Identities=25% Similarity=0.422 Sum_probs=60.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
+.++|+++.|++ +.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++
T Consensus 3 l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 66 (242)
T PRK11124 3 IQLNGINCFYGA----HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66 (242)
T ss_pred EEEEeeEEEECC----eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence 678999999953 4699999999999999999999999999999999999999999999999876
No 144
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.62 E-value=8.7e-16 Score=135.05 Aligned_cols=68 Identities=26% Similarity=0.432 Sum_probs=60.9
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++|+++.|++. +++++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus 1 l~i~~l~~~~~~~-~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 68 (238)
T cd03249 1 IEFKNVSFRYPSR-PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIR 68 (238)
T ss_pred CeEEEEEEecCCC-CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehh
Confidence 3578999999641 1357999999999999999999999999999999999999999999999998764
No 145
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.62 E-value=1.2e-15 Score=129.07 Aligned_cols=63 Identities=35% Similarity=0.456 Sum_probs=59.5
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.+++++|.| +++++||++++||+++|+|+|||||||++++|+|+.+|++|++.++|.++.+
T Consensus 4 ~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 66 (182)
T cd03215 4 VLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTR 66 (182)
T ss_pred EEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCc
Confidence 58899999886 8999999999999999999999999999999999999999999999988754
No 146
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.62 E-value=8.4e-16 Score=136.14 Aligned_cols=66 Identities=27% Similarity=0.455 Sum_probs=61.5
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|+++.|++ +++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 68 (250)
T PRK11264 3 AIEVKNLVKKFHG----QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITID 68 (250)
T ss_pred cEEEeceEEEECC----eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcc
Confidence 4789999999953 46999999999999999999999999999999999999999999999998875
No 147
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=9.7e-16 Score=133.92 Aligned_cols=67 Identities=28% Similarity=0.493 Sum_probs=61.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|+++.|++ ++++++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~---~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 68 (229)
T cd03254 2 EIEFENVNFSYDE---KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIR 68 (229)
T ss_pred eEEEEEEEEecCC---CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHH
Confidence 3789999999953 246999999999999999999999999999999999999999999999998875
No 148
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.62 E-value=1.3e-15 Score=124.10 Aligned_cols=62 Identities=32% Similarity=0.571 Sum_probs=57.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
++++++++.|++ .++++++||++++||+++|+|+|||||||++++|+|+.+|++|+++++|.
T Consensus 1 l~~~~l~~~~~~----~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~ 62 (144)
T cd03221 1 IELENLSKTYGG----KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST 62 (144)
T ss_pred CEEEEEEEEECC----ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe
Confidence 367899999953 36999999999999999999999999999999999999999999999984
No 149
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.62 E-value=1.2e-15 Score=135.84 Aligned_cols=64 Identities=30% Similarity=0.561 Sum_probs=60.6
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~ 279 (288)
.+.++++++.|++ +++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 69 (258)
T PRK11701 6 LLSVRGLTKLYGP----RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD 69 (258)
T ss_pred eEEEeeeEEEcCC----ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcc
Confidence 5889999999953 469999999999999999999999999999999999999999999999987
No 150
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.4e-15 Score=138.86 Aligned_cols=68 Identities=25% Similarity=0.448 Sum_probs=60.9
Q ss_pred EEEEeeeEEecccc-ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 213 LVVKRLFKIYANSK-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 213 l~~~~l~k~y~~~~-~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
+.++|+++.|++.. ..+++++|+||.|++||++||+|+|||||||++++|+|+.+|++|+|+++|.++
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~ 71 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE 71 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceec
Confidence 78999999996421 124699999999999999999999999999999999999999999999998765
No 151
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.62 E-value=1.2e-15 Score=135.82 Aligned_cols=67 Identities=25% Similarity=0.453 Sum_probs=62.3
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..+.++++++.|++ +.+++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus 4 ~~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 70 (257)
T PRK10619 4 NKLNVIDLHKRYGE----HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTIN 70 (257)
T ss_pred ccEEEeeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcc
Confidence 45899999999953 56999999999999999999999999999999999999999999999998874
No 152
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1e-15 Score=136.07 Aligned_cols=66 Identities=30% Similarity=0.505 Sum_probs=61.1
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|+++.|+ ++++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus 2 ~l~~~~l~~~~~----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (255)
T PRK11231 2 TLRTENLTVGYG----TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEEeEEEEEC----CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhH
Confidence 378999999995 256999999999999999999999999999999999999999999999998764
No 153
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=8.8e-16 Score=132.60 Aligned_cols=65 Identities=37% Similarity=0.627 Sum_probs=59.5
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++ +++++|+||++++| ++||+|+|||||||++++|+|+.+|++|+|.++|.++.+
T Consensus 1 i~~~~~~~~~~~----~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 65 (211)
T cd03264 1 LQLENLTKRYGK----KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK 65 (211)
T ss_pred CEEEEEEEEECC----EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCcccc
Confidence 368899999953 46999999999999 999999999999999999999999999999999988753
No 154
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.1e-15 Score=142.92 Aligned_cols=67 Identities=24% Similarity=0.484 Sum_probs=62.0
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.+++++|.|++ +.+++|+||++++||+++|+|+|||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 3 ~l~i~~l~~~~~~----~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~ 69 (369)
T PRK11000 3 SVTLRNVTKAYGD----VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMND 69 (369)
T ss_pred EEEEEEEEEEeCC----eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCC
Confidence 3789999999953 569999999999999999999999999999999999999999999999988753
No 155
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.62 E-value=1.1e-15 Score=133.08 Aligned_cols=65 Identities=45% Similarity=0.686 Sum_probs=59.8
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.+++++|.|++ +++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus 1 l~l~~v~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~ 65 (223)
T TIGR03740 1 LETKNLSKRFGK----QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT 65 (223)
T ss_pred CEEEeEEEEECC----EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecc
Confidence 367899999953 56999999999999999999999999999999999999999999999998764
No 156
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.2e-15 Score=140.60 Aligned_cols=71 Identities=25% Similarity=0.349 Sum_probs=63.1
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC----CCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK----PTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~----pt~G~i~i~g~~i~~ 282 (288)
.+.++|++|.|+..++...+++|+||+|++||++||+|+|||||||++++|+|+.+ |++|+|+++|.++.+
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~ 77 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLR 77 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCc
Confidence 57899999999643334579999999999999999999999999999999999997 589999999998753
No 157
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.4e-15 Score=135.01 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=61.5
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 281 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~ 281 (288)
...+.++++++.|++ +.+++|+||++++||++||+|+|||||||++|+|+|+.+ |++|+|.++|.++.
T Consensus 4 ~~~l~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 76 (253)
T PRK14242 4 PPKMEARGLSFFYGD----FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76 (253)
T ss_pred CcEEEEeeeEEEECC----eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcc
Confidence 346899999999953 469999999999999999999999999999999999864 68999999998875
No 158
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.61 E-value=2.8e-14 Score=152.65 Aligned_cols=71 Identities=24% Similarity=0.322 Sum_probs=63.5
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC---CCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~---pt~G~i~i~g~~i~~ 282 (288)
.+..+|+++.|+.+++++.+++|+|+.+++||++||+|+|||||||++++|+|..+ |++|+|.++|+++.+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~ 832 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS 832 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh
Confidence 47899999999643345679999999999999999999999999999999999998 789999999998754
No 159
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.61 E-value=1.6e-15 Score=129.59 Aligned_cols=64 Identities=28% Similarity=0.427 Sum_probs=57.8
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++++++.|++ +... ++||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++.
T Consensus 2 l~~~~l~~~~~~----~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIEQ----KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEECC----cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccC
Confidence 678999999952 3445 599999999999999999999999999999999999999999998874
No 160
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.61 E-value=1.5e-15 Score=134.80 Aligned_cols=64 Identities=33% Similarity=0.551 Sum_probs=59.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~ 279 (288)
.+.++|+++.|++ +.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 66 (253)
T TIGR02323 3 LLQVSGLSKSYGG----GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRS 66 (253)
T ss_pred eEEEeeeEEEeCC----ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccc
Confidence 5889999999953 468999999999999999999999999999999999999999999999876
No 161
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.3e-15 Score=140.14 Aligned_cols=71 Identities=24% Similarity=0.415 Sum_probs=62.8
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC----CCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK----PTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~----pt~G~i~i~g~~i~~ 282 (288)
.+.++|+++.|+.+.+...||+|+||+|++||++||+|+|||||||++++|+|+.+ |++|+|.++|.++.+
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~ 77 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQR 77 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCc
Confidence 47899999999653222569999999999999999999999999999999999998 489999999998753
No 162
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.61 E-value=1.6e-15 Score=139.78 Aligned_cols=72 Identities=29% Similarity=0.471 Sum_probs=64.5
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC---CceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt---~G~i~i~g~~i~~ 282 (288)
..+.++|+++.|+..++...+++|+||+|++||++||+|+|||||||++++|+|+.+|+ +|+|+++|.++.+
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILN 85 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCc
Confidence 46899999999964333457999999999999999999999999999999999999996 9999999998753
No 163
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.61 E-value=1.7e-15 Score=129.40 Aligned_cols=71 Identities=24% Similarity=0.326 Sum_probs=63.0
Q ss_pred eEEEEeeeEEecccc--ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC--CCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSK--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~--~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~--~pt~G~i~i~g~~i~~ 282 (288)
.+.++++++.|++.+ .++++++|+||++++||+++|+|+|||||||++++|+|+. +|++|++.++|.++..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~ 77 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK 77 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch
Confidence 478999999996310 1257999999999999999999999999999999999999 9999999999998753
No 164
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.61 E-value=1.4e-15 Score=130.77 Aligned_cols=65 Identities=23% Similarity=0.392 Sum_probs=57.6
Q ss_pred EEEEeeeEEeccccc-cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 213 LVVKRLFKIYANSKD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 213 l~~~~l~k~y~~~~~-~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
+.++|++|.|++.+. .+++++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC
Confidence 468999999964110 13699999999999999999999999999999999999999999999987
No 165
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.5e-15 Score=134.76 Aligned_cols=66 Identities=17% Similarity=0.386 Sum_probs=60.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-----CceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-----~G~i~i~g~~i~ 281 (288)
.+.++++++.|++ +++++|+||++++||++||+|+|||||||++++|+|+++|+ +|+|+++|.++.
T Consensus 4 ~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 4 AIETVNLRVYYGS----NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred eEEEEeEEEEeCC----eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 5789999999953 46999999999999999999999999999999999999974 999999999875
No 166
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.61 E-value=2.1e-15 Score=141.05 Aligned_cols=68 Identities=25% Similarity=0.510 Sum_probs=63.0
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.++|++|.|+ ++.+++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.++.+
T Consensus 13 ~~L~l~~l~~~~~----~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~ 80 (375)
T PRK09452 13 PLVELRGISKSFD----GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITH 80 (375)
T ss_pred ceEEEEEEEEEEC----CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCC
Confidence 3689999999995 3569999999999999999999999999999999999999999999999998753
No 167
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.61 E-value=1.4e-15 Score=130.48 Aligned_cols=66 Identities=29% Similarity=0.466 Sum_probs=60.1
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC--CCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~--~~pt~G~i~i~g~~i~~ 282 (288)
+.++|++|.|++ +++++|+||++++||+++|+|+|||||||++++|+|+ .+|++|++.++|.++.+
T Consensus 1 l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~ 68 (200)
T cd03217 1 LEIKDLHVSVGG----KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68 (200)
T ss_pred CeEEEEEEEeCC----EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence 368899999953 4699999999999999999999999999999999999 58999999999998754
No 168
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=2.2e-15 Score=135.70 Aligned_cols=70 Identities=26% Similarity=0.491 Sum_probs=63.1
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++++++.|++. +.+++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|.++.+
T Consensus 4 ~l~~~~l~~~~~~~-~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~ 73 (277)
T PRK13642 4 ILEVENLVFKYEKE-SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTA 73 (277)
T ss_pred eEEEEEEEEEcCCC-CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCc
Confidence 58899999999631 23469999999999999999999999999999999999999999999999998753
No 169
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=1.7e-15 Score=132.97 Aligned_cols=66 Identities=23% Similarity=0.461 Sum_probs=60.2
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++++++.|++ ++.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus 1 l~~~~l~~~~~~---~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~ 66 (236)
T cd03253 1 IEFENVTFAYDP---GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR 66 (236)
T ss_pred CEEEEEEEEeCC---CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhh
Confidence 357899999953 246999999999999999999999999999999999999999999999998875
No 170
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=2.5e-15 Score=135.72 Aligned_cols=69 Identities=32% Similarity=0.553 Sum_probs=62.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC---ceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---GNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~---G~i~i~g~~i~~ 282 (288)
.+.++++++.|++ .++++++++||+|++||++||+|+|||||||++++|+|+.+|++ |+|+++|.++.+
T Consensus 5 ~l~i~~l~~~~~~--~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~ 76 (282)
T PRK13640 5 IVEFKHVSFTYPD--SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTA 76 (282)
T ss_pred eEEEEEEEEEcCC--CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCc
Confidence 6889999999963 23469999999999999999999999999999999999999998 899999998753
No 171
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2.1e-15 Score=135.28 Aligned_cols=67 Identities=19% Similarity=0.331 Sum_probs=61.5
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~ 281 (288)
..+.++|+++.|++ +.+++|+||+|++||++||+|+|||||||++++|+|+.+ |++|++.++|.++.
T Consensus 12 ~~l~i~nl~~~~~~----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 12 IIISLQNVTISYGT----FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred ceEEEEeEEEEECC----EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 36899999999953 569999999999999999999999999999999999987 69999999998874
No 172
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.60 E-value=2.1e-15 Score=140.53 Aligned_cols=67 Identities=22% Similarity=0.487 Sum_probs=62.3
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC--ceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS--GNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~--G~i~i~g~~i~~ 282 (288)
.+.+++++|.|++ +.+++|+||++++||+++|+|||||||||++++|+|+++|++ |+|.++|.++.+
T Consensus 5 ~l~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 5 GIRIDHLRVAYGA----NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTH 73 (362)
T ss_pred EEEEEEEEEEECC----eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCC
Confidence 5889999999953 569999999999999999999999999999999999999999 999999998753
No 173
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=9.1e-16 Score=136.25 Aligned_cols=66 Identities=26% Similarity=0.504 Sum_probs=60.8
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc---cccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH---SIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~---~i~~ 282 (288)
+.+++++|.|+ ...|++|+|++|+.||.++|+|||||||||++++|+|++.|++|.|.++|. |.++
T Consensus 3 i~i~~~~~~~~----~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 3 IRINNVKKRFG----AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN 71 (345)
T ss_pred eeehhhhhhcc----cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc
Confidence 67888899885 478999999999999999999999999999999999999999999999999 6544
No 174
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.60 E-value=2.9e-15 Score=133.47 Aligned_cols=70 Identities=19% Similarity=0.311 Sum_probs=63.7
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.++++++.|++ .++.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++.+
T Consensus 18 ~~i~~~~l~~~~~~--~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~ 87 (257)
T cd03288 18 GEIKIHDLCVRYEN--NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISK 87 (257)
T ss_pred ceEEEEEEEEEeCC--CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhh
Confidence 46899999999964 22569999999999999999999999999999999999999999999999988753
No 175
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.60 E-value=2.3e-15 Score=133.14 Aligned_cols=65 Identities=26% Similarity=0.396 Sum_probs=59.9
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC--CCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~--~pt~G~i~i~g~~i~ 281 (288)
+.++|+++.|++ +++++|+||.|++||+++|+|+|||||||++++|+|+. +|++|++.++|.++.
T Consensus 2 i~~~nl~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVED----KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeCC----eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 678999999953 56999999999999999999999999999999999995 699999999998874
No 176
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.60 E-value=2.3e-15 Score=125.52 Aligned_cols=63 Identities=21% Similarity=0.325 Sum_probs=57.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
+.++++++.|++ ++++++|+||++++||+.+|+|+|||||||++++|+|+.+|++|++.++|.
T Consensus 1 i~~~~~~~~~~~---~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~ 63 (166)
T cd03223 1 IELENLSLATPD---GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG 63 (166)
T ss_pred CEEEEEEEEcCC---CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC
Confidence 357899999953 256999999999999999999999999999999999999999999999873
No 177
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.60 E-value=2.4e-15 Score=131.08 Aligned_cols=65 Identities=35% Similarity=0.541 Sum_probs=57.8
Q ss_pred EEEEeeeEEecccc--c-cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 213 LVVKRLFKIYANSK--D-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 213 l~~~~l~k~y~~~~--~-~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
+.++|++|.|+... + ++++++|+||++++||++||+|+|||||||++++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~ 69 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRH 69 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEec
Confidence 67899999996311 1 24699999999999999999999999999999999999999999999983
No 178
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.60 E-value=1.8e-15 Score=132.21 Aligned_cols=70 Identities=26% Similarity=0.350 Sum_probs=62.6
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC---CCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~---pt~G~i~i~g~~i~ 281 (288)
.+..+++++.|++.+..+++++|+||++++||++||+|+|||||||++|+|+|+.+ |++|++.++|.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~ 75 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK 75 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC
Confidence 46789999999653224689999999999999999999999999999999999999 99999999998874
No 179
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.60 E-value=3e-15 Score=134.14 Aligned_cols=69 Identities=23% Similarity=0.330 Sum_probs=62.6
Q ss_pred CCCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219 209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 281 (288)
Q Consensus 209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~ 281 (288)
....+.++|+++.|+ ++++++|+||++++||++||+|+|||||||++++|+|+.+ |++|+|.++|.++.
T Consensus 17 ~~~~l~~~nl~~~~~----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 17 EEIALSTKDLHVYYG----KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CCeEEEEeeEEEEEC----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 344799999999994 3579999999999999999999999999999999999986 58999999999875
No 180
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.60 E-value=2.9e-15 Score=132.88 Aligned_cols=68 Identities=26% Similarity=0.468 Sum_probs=61.8
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC--CCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~--~~pt~G~i~i~g~~i~~ 282 (288)
..+.++++++.|++ +.+++|+||++++||++||+|+|||||||++++|+|+ .+|++|+++++|.++.+
T Consensus 6 ~~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~ 75 (252)
T CHL00131 6 PILEIKNLHASVNE----NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILD 75 (252)
T ss_pred ceEEEEeEEEEeCC----EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEccc
Confidence 36899999999953 4699999999999999999999999999999999998 68999999999988753
No 181
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.5e-15 Score=133.83 Aligned_cols=66 Identities=20% Similarity=0.324 Sum_probs=60.5
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~ 281 (288)
.+.++|++|.|++ +++++|+||++++||++||+|+|||||||++|+|+|+.+| ++|+|.++|.++.
T Consensus 4 ~l~i~~v~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~ 74 (258)
T PRK14241 4 RIDVKDLNIYYGS----FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLY 74 (258)
T ss_pred cEEEeeEEEEECC----EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecc
Confidence 4789999999953 4699999999999999999999999999999999999974 7999999998874
No 182
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2.3e-15 Score=141.71 Aligned_cols=53 Identities=32% Similarity=0.592 Sum_probs=50.7
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+++|+||++++||+++|+|+|||||||++|+|+|+++|++|+|+++|.++.+
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~ 94 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAK 94 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCc
Confidence 48999999999999999999999999999999999999999999999998753
No 183
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.59 E-value=2.8e-15 Score=131.97 Aligned_cols=65 Identities=23% Similarity=0.466 Sum_probs=60.2
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++++++.|++ +.+++|+||++++||+.||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus 1 i~i~~l~~~~~~----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~ 65 (237)
T TIGR00968 1 IEIANISKRFGS----FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDAT 65 (237)
T ss_pred CEEEEEEEEECC----eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence 367899999953 46999999999999999999999999999999999999999999999998875
No 184
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=3.7e-15 Score=139.59 Aligned_cols=68 Identities=32% Similarity=0.591 Sum_probs=63.0
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.+++++|.|++ +.+++|+||++++||+++|+|||||||||++|+|+|+.+|++|+|+++|.++.+
T Consensus 18 ~~l~l~~v~~~~~~----~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~ 85 (377)
T PRK11607 18 PLLEIRNLTKSFDG----QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSH 85 (377)
T ss_pred ceEEEEeEEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCC
Confidence 46999999999953 569999999999999999999999999999999999999999999999998753
No 185
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.59 E-value=3e-15 Score=134.22 Aligned_cols=70 Identities=30% Similarity=0.501 Sum_probs=62.4
Q ss_pred eEEEEeeeEEeccc-----cccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANS-----KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~-----~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|++|.|+.. ..++++++|+||++++||+++|+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~ 77 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLA 77 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence 47899999999621 01357999999999999999999999999999999999999999999999999874
No 186
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.59 E-value=2.8e-15 Score=134.67 Aligned_cols=65 Identities=26% Similarity=0.453 Sum_probs=60.4
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC--------CceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT--------SGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt--------~G~i~i~g~~i~ 281 (288)
+.++|+++.|++ +++++|+||+|++||++||+|+|||||||++|+|+|+.+|+ +|+|.++|.++.
T Consensus 2 l~~~nl~~~~~~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 2 LTADHLHVARRH----RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred eEEEEEEEEECC----EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence 678999999953 56999999999999999999999999999999999999998 999999998874
No 187
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.8e-15 Score=132.85 Aligned_cols=67 Identities=18% Similarity=0.372 Sum_probs=60.8
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~~ 282 (288)
.+.++++++.|++ +++++|+||++++||++||+|+|||||||++++|+|+.+| ++|+|.++|.++.+
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 74 (250)
T PRK14247 3 KIEIRDLKVSFGQ----VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74 (250)
T ss_pred eEEEEeeEEEECC----eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCc
Confidence 4789999999953 4699999999999999999999999999999999999984 79999999998753
No 188
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=2.5e-15 Score=131.75 Aligned_cols=66 Identities=32% Similarity=0.572 Sum_probs=60.6
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|+. +++++|+||++++||++||+|+|||||||++++|+|+.+|++|++.++|.++.+
T Consensus 1 l~~~~l~~~~~~----~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~ 66 (232)
T cd03300 1 IELENVSKFYGG----FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITN 66 (232)
T ss_pred CEEEeEEEEeCC----eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCc
Confidence 358899999953 569999999999999999999999999999999999999999999999988753
No 189
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.59 E-value=3.1e-15 Score=129.88 Aligned_cols=65 Identities=15% Similarity=0.267 Sum_probs=59.5
Q ss_pred EEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 214 VVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 214 ~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++.+.|++ ++++++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus 2 ~~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 66 (218)
T cd03290 2 QVTNGYFSWGS---GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNES 66 (218)
T ss_pred eeeeeEEecCC---CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccc
Confidence 46788889864 356999999999999999999999999999999999999999999999998764
No 190
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=1.1e-15 Score=137.05 Aligned_cols=64 Identities=31% Similarity=0.553 Sum_probs=58.4
Q ss_pred EEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 214 VVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 214 ~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+++++|.|+ ++.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 26 ~~~~~~~~~~----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~ 89 (269)
T cd03294 26 SKEEILKKTG----QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIA 89 (269)
T ss_pred hhhhhhhhcC----CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcc
Confidence 4567888885 357999999999999999999999999999999999999999999999998875
No 191
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=3.7e-15 Score=132.90 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=61.7
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 281 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~ 281 (288)
...+.++|+++.|++ +++++|+||++++||++||+|+|||||||++|+|+|+.+ |++|+|.++|.++.
T Consensus 11 ~~~l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 11 PSKIQVRNLNFYYGK----FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred CceEEEEEEEEEeCC----eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 346889999999953 469999999999999999999999999999999999986 58999999998874
No 192
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=3.8e-15 Score=132.35 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=61.4
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~ 281 (288)
..+.++++++.|++ +++++|+||++++||+++|+|+|||||||++|+|+|+.+| ++|+|+++|.++.
T Consensus 6 ~~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 6 AIIETENLNLFYTD----FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred ceEEEeeeEEEeCC----ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 36899999999953 4699999999999999999999999999999999999997 5899999998874
No 193
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=3.4e-15 Score=132.30 Aligned_cols=67 Identities=22% Similarity=0.360 Sum_probs=60.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~~ 282 (288)
.+.++|+++.|++ +++++|+||++++||++||+|+|||||||++++|+|+.+| ++|+|.++|.++.+
T Consensus 3 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14240 3 KISVKDLDLFYGD----FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK 74 (250)
T ss_pred eEEEEEEEEEECC----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 4789999999953 4699999999999999999999999999999999999763 79999999998753
No 194
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=4.5e-15 Score=130.07 Aligned_cols=67 Identities=34% Similarity=0.547 Sum_probs=62.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.+++++..|++ + .++++|+|++|++||+.+|+|+||+||||++++|+|+.+|++|.|.++|.++.
T Consensus 3 ~i~~~~l~~~y~~--~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~ 69 (235)
T COG1122 3 MIEAENLSFRYPG--R-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTS 69 (235)
T ss_pred eEEEEEEEEEcCC--C-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeecc
Confidence 4778999999975 2 68999999999999999999999999999999999999999999999999875
No 195
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=4.5e-15 Score=133.29 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=62.4
Q ss_pred CCCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219 209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 281 (288)
Q Consensus 209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~ 281 (288)
....+.++|+++.|++ +++++|+||++++||++||+|+|||||||++++|+|+.+ |++|++.++|.++.
T Consensus 22 ~~~~l~~~nl~~~~~~----~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 22 EQTALEVRNLNLFYGD----KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred CCcEEEEEEEEEEECC----eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 3446899999999953 469999999999999999999999999999999999988 48999999999875
No 196
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.58 E-value=4.1e-15 Score=132.11 Aligned_cols=63 Identities=22% Similarity=0.444 Sum_probs=58.6
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
.+.++++++.|++ +++++++||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~~----~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~ 66 (251)
T PRK09544 4 LVSLENVSVSFGQ----RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK 66 (251)
T ss_pred EEEEeceEEEECC----ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc
Confidence 5789999999953 46999999999999999999999999999999999999999999999873
No 197
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.58 E-value=4.2e-15 Score=132.15 Aligned_cols=65 Identities=22% Similarity=0.397 Sum_probs=60.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC----CCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP----TSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p----t~G~i~i~g~~i~ 281 (288)
.+.++|++|.| + +++++|+||.+++||++||+|+|||||||++++|+|+.+| ++|+|+++|.++.
T Consensus 4 ~l~~~~l~~~~-~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~ 72 (254)
T PRK10418 4 QIELRNIALQA-A----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVA 72 (254)
T ss_pred EEEEeCeEEEe-c----cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecc
Confidence 58899999999 2 3699999999999999999999999999999999999999 9999999998874
No 198
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.58 E-value=2.2e-15 Score=128.08 Aligned_cols=54 Identities=33% Similarity=0.618 Sum_probs=51.3
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
++.+++++||++++||++||+|+|||||||++++|+|+.+|++|+|.++|.++.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 57 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLD 57 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEcc
Confidence 356999999999999999999999999999999999999999999999998874
No 199
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4e-15 Score=132.59 Aligned_cols=67 Identities=22% Similarity=0.341 Sum_probs=61.3
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~ 281 (288)
..+.++++++.|+ ++++++|+||++++||++||+|+|||||||++++|+|+.+| ++|+|.++|.++.
T Consensus 11 ~~l~~~~l~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 11 PQIKVENLNLWYG----EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred eeEEEeeeEEEeC----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 3688999999995 25699999999999999999999999999999999999985 8999999998875
No 200
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=5.3e-15 Score=133.77 Aligned_cols=67 Identities=16% Similarity=0.364 Sum_probs=61.5
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~ 281 (288)
..+.++++++.|++ +.+++|+||.|++||++||+|+|||||||++++|+|+.+ |++|+|.++|.++.
T Consensus 38 ~~l~i~~l~~~~~~----~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 38 TVIEARDLNVFYGD----EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred ceEEEEEEEEEECC----EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 35889999999953 469999999999999999999999999999999999987 69999999998874
No 201
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.3e-15 Score=132.43 Aligned_cols=67 Identities=24% Similarity=0.398 Sum_probs=61.1
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC--C---CCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~--p---t~G~i~i~g~~i~ 281 (288)
..+.++|+++.|+. +++++|+||+|++||++||+|+|||||||++++|+|+.+ | ++|++.++|.++.
T Consensus 11 ~~l~i~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 11 EVYQINGMNLWYGQ----HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred ceEEEeeEEEEECC----eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence 46899999999953 469999999999999999999999999999999999987 3 6999999999875
No 202
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=3.9e-15 Score=128.54 Aligned_cols=64 Identities=20% Similarity=0.461 Sum_probs=57.1
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|+++.|++ +. .|+||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++..
T Consensus 1 i~~~~l~~~~~~----~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~ 64 (211)
T cd03298 1 VRLDKIRFSYGE----QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTA 64 (211)
T ss_pred CEEEeEEEEeCC----Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCc
Confidence 368899999953 22 39999999999999999999999999999999999999999999988753
No 203
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.1e-15 Score=131.87 Aligned_cols=66 Identities=27% Similarity=0.437 Sum_probs=60.5
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-----CceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-----~G~i~i~g~~i~ 281 (288)
.+.++|++|.|++ +++++|+||+|++||++||+|+|||||||++|+|+|+.+|+ +|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 74 (252)
T PRK14272 4 LLSAQDVNIYYGD----KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74 (252)
T ss_pred EEEEeeeEEEECC----EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcc
Confidence 4789999999952 56999999999999999999999999999999999999875 899999998875
No 204
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.58 E-value=5.1e-15 Score=132.92 Aligned_cols=68 Identities=24% Similarity=0.373 Sum_probs=62.1
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 281 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~ 281 (288)
...+.++++++.|++ +++++|+||++++||++||+|+|||||||++++|+|+.+ |++|+|.++|.++.
T Consensus 22 ~~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 94 (271)
T PRK14238 22 KVVFDTQNLNLWYGE----DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF 94 (271)
T ss_pred ceEEEEeeeEEEECC----cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcc
Confidence 346999999999953 469999999999999999999999999999999999987 69999999998874
No 205
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.7e-15 Score=131.42 Aligned_cols=67 Identities=21% Similarity=0.424 Sum_probs=60.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~~ 282 (288)
.+.++|+++.|+ ++++++|+||++++||+++|+|+|||||||++++|+|+.+| ++|++.++|.++..
T Consensus 3 ~l~~~~l~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~ 74 (250)
T PRK14262 3 IIEIENFSAYYG----EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74 (250)
T ss_pred eEEEEeeEEEeC----CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 478999999995 25699999999999999999999999999999999999884 89999999988753
No 206
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.58 E-value=4.3e-15 Score=128.58 Aligned_cols=64 Identities=28% Similarity=0.500 Sum_probs=58.0
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|+++.|+. ..+|+||.+++||+.||+|+|||||||++|+|+|+.+|++|+|+++|.++.+
T Consensus 1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 64 (213)
T TIGR01277 1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG 64 (213)
T ss_pred CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccc
Confidence 357899999942 4579999999999999999999999999999999999999999999998753
No 207
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.3e-15 Score=131.42 Aligned_cols=66 Identities=18% Similarity=0.327 Sum_probs=60.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC---CCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~---pt~G~i~i~g~~i~~ 282 (288)
+.++|+++.|++ +++++|+||++++||++||+|+|||||||++|+|+|+.+ |++|+|.++|.++.+
T Consensus 3 ~~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~ 71 (246)
T PRK14269 3 AKTTNLNLFYGK----KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKN 71 (246)
T ss_pred eeeeeeEEEECC----EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEeccc
Confidence 678999999953 569999999999999999999999999999999999974 799999999998753
No 208
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.58 E-value=4.5e-15 Score=132.76 Aligned_cols=67 Identities=30% Similarity=0.472 Sum_probs=58.9
Q ss_pred eEEEEeeeEEeccc----------------cccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219 212 VLVVKRLFKIYANS----------------KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275 (288)
Q Consensus 212 ~l~~~~l~k~y~~~----------------~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i 275 (288)
.+.++|+.|+|... ..++++++++||++++||++||+|+|||||||++++|+|+.+|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 46788888888642 13356999999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy7219 276 MNH 278 (288)
Q Consensus 276 ~g~ 278 (288)
+|.
T Consensus 84 ~g~ 86 (264)
T PRK13546 84 NGE 86 (264)
T ss_pred CCE
Confidence 985
No 209
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=5.1e-15 Score=131.36 Aligned_cols=67 Identities=18% Similarity=0.372 Sum_probs=60.8
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC--C---CCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~--p---t~G~i~i~g~~i~ 281 (288)
..+.++|+++.|++ +++++|+||.|++||++||+|+|||||||++++|+|+.+ | ++|+|.++|.++.
T Consensus 3 ~~l~~~nl~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~ 74 (252)
T PRK14256 3 NKVKLEQLNVHFGK----NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIY 74 (252)
T ss_pred cEEEEEEEEEEeCC----eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcc
Confidence 35889999999952 469999999999999999999999999999999999986 4 6899999999875
No 210
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.57 E-value=4.1e-15 Score=144.50 Aligned_cols=66 Identities=29% Similarity=0.472 Sum_probs=61.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|++|.|++ +++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 4 ~i~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~ 69 (501)
T PRK10762 4 LLQLKGIDKAFPG----VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVT 69 (501)
T ss_pred eEEEeeeEEEeCC----eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 5889999999953 56999999999999999999999999999999999999999999999998874
No 211
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=5.3e-15 Score=131.20 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=60.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~ 281 (288)
.+.++|+++.|+. +.+++|+||++++||++||+|+|||||||++++|+|+.+| ++|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 4 KMESKNLNLWYGE----KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred EEEEEEeEEEECC----eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecc
Confidence 5789999999952 5699999999999999999999999999999999999875 7999999999875
No 212
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=5.8e-15 Score=130.86 Aligned_cols=66 Identities=24% Similarity=0.353 Sum_probs=60.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~ 281 (288)
.+.++++++.|+. +++++|+||++++||++||+|+|||||||++|+|+|+.+ |++|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~ 74 (251)
T PRK14251 4 IISAKDVHLSYGN----YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIY 74 (251)
T ss_pred eEEEEeeEEEECC----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcc
Confidence 5789999999953 569999999999999999999999999999999999997 48999999999874
No 213
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.57 E-value=6.2e-15 Score=131.59 Aligned_cols=66 Identities=24% Similarity=0.528 Sum_probs=60.8
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC---CceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt---~G~i~i~g~~i~ 281 (288)
.+.++|+++.|+ ++.+++|+||.+++||+++|+|+|||||||++++|+|+.+|+ +|+|+++|.++.
T Consensus 4 ~l~~~nl~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~ 72 (262)
T PRK09984 4 IIRVEKLAKTFN----QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQ 72 (262)
T ss_pred EEEEeeEEEEeC----CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecc
Confidence 688999999995 356999999999999999999999999999999999999986 499999998874
No 214
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=5.6e-15 Score=129.85 Aligned_cols=65 Identities=32% Similarity=0.558 Sum_probs=59.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++ + +++|+||++++||++||+|+|||||||++++|+|+.+|++|+++++|.++.+
T Consensus 1 l~~~~l~~~~~~----~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~ 65 (235)
T cd03299 1 LKVENLSKDWKE----F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITN 65 (235)
T ss_pred CeeEeEEEEeCC----c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCc
Confidence 357899999952 2 8999999999999999999999999999999999999999999999988753
No 215
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.57 E-value=1.8e-15 Score=125.36 Aligned_cols=70 Identities=37% Similarity=0.649 Sum_probs=61.8
Q ss_pred eEEEEeeeEEeccc-----cccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANS-----KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~-----~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.++++|++|.|... +....||+.+||++++||..|++|.||+||||+.|||+|..+||+|++.+||+++.
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~ 78 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLH 78 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCcccc
Confidence 46788888888532 23457999999999999999999999999999999999999999999999998864
No 216
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=7.9e-15 Score=132.03 Aligned_cols=66 Identities=27% Similarity=0.352 Sum_probs=61.2
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~ 281 (288)
.+.++|+++.|+ ++++++|+||++++||++||+|+|||||||++++|+|+.+| ++|+|.++|.++.
T Consensus 21 ~l~i~nl~~~~~----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 21 AMAAVNLTLGFA----GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred EEEEeeEEEEEC----CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence 689999999995 35799999999999999999999999999999999999986 6999999998875
No 217
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.57 E-value=5.4e-15 Score=143.97 Aligned_cols=67 Identities=31% Similarity=0.458 Sum_probs=62.2
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++|.|++ +.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++..
T Consensus 5 ~l~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~ 71 (510)
T PRK09700 5 YISMAGIGKSFGP----VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNK 71 (510)
T ss_pred eEEEeeeEEEcCC----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCC
Confidence 5889999999953 569999999999999999999999999999999999999999999999988753
No 218
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.56 E-value=3.7e-15 Score=148.78 Aligned_cols=70 Identities=26% Similarity=0.476 Sum_probs=64.6
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.++|++..|+. .+.++++|+|++|++||.+||+|+|||||||++|+|+|+++|++|+|.+||+|+.+
T Consensus 470 g~I~~~nvsf~y~~--~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~ 539 (709)
T COG2274 470 GEIEFENVSFRYGP--DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLND 539 (709)
T ss_pred ceEEEEEEEEEeCC--CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHh
Confidence 36999999999975 33479999999999999999999999999999999999999999999999999753
No 219
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.56 E-value=3.4e-15 Score=125.68 Aligned_cols=61 Identities=30% Similarity=0.364 Sum_probs=54.5
Q ss_pred EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.|++|.|+ ++.++++. +.+++||+++|+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 4 ~~l~~~~~----~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 64 (177)
T cd03222 4 PDCVKRYG----VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV 64 (177)
T ss_pred CCeEEEEC----CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEE
Confidence 57889995 35688884 999999999999999999999999999999999999999997653
No 220
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.56 E-value=7.1e-15 Score=143.14 Aligned_cols=67 Identities=31% Similarity=0.530 Sum_probs=62.3
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++|.|++ +.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++..
T Consensus 11 ~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 77 (510)
T PRK15439 11 LLCARSISKQYSG----VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCAR 77 (510)
T ss_pred eEEEEeEEEEeCC----ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCC
Confidence 6899999999953 569999999999999999999999999999999999999999999999988753
No 221
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=5.7e-15 Score=130.78 Aligned_cols=66 Identities=20% Similarity=0.311 Sum_probs=60.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~ 281 (288)
.+.++|+++.|+ ++.+++|+||++++||+.||+|+|||||||++++|+|+.+| ++|++.++|.++.
T Consensus 3 ~l~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 3 KFNIENLDLFYG----ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred eEEEeccEEEEC----CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcc
Confidence 478999999995 35699999999999999999999999999999999999986 5999999998874
No 222
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=9.2e-15 Score=129.80 Aligned_cols=67 Identities=25% Similarity=0.432 Sum_probs=60.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC--C---CCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~--p---t~G~i~i~g~~i~~ 282 (288)
.+.++++++.|+ ++.+++|+||++++||++||+|+|||||||++|+|+|+.+ | ++|+|.++|.++.+
T Consensus 6 ~i~~~~l~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 6 ILSTKNLNLWYG----EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred eEEEeeeEEEEC----CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 688999999995 3569999999999999999999999999999999999876 3 48999999998754
No 223
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=9.5e-15 Score=133.33 Aligned_cols=67 Identities=22% Similarity=0.323 Sum_probs=61.5
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~ 281 (288)
..+.++|+++.|++ +++++++||++++||++||+|+|||||||++++|+|+.+ |++|+|+++|.++.
T Consensus 44 ~~l~i~nl~~~~~~----~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 44 AKLSVEDLDVYYGD----DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred ceEEEEEEEEEeCC----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 36899999999953 569999999999999999999999999999999999986 69999999998875
No 224
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=9.5e-15 Score=130.47 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=61.5
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~ 281 (288)
.++.++++++.|+ ++++++|+||++++||++||+|+|||||||++|+|+|+.+| ++|+|.++|.++.
T Consensus 7 ~~~~~~~~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 7 IVMDCKLDKIFYG----NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred ceEEEEeEEEEeC----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence 4688999999984 35799999999999999999999999999999999999987 7999999999875
No 225
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=1e-14 Score=127.91 Aligned_cols=64 Identities=28% Similarity=0.516 Sum_probs=57.8
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++++.|++ +. .|+||++++||++||+|+|||||||++++|+|+++|++|++.++|.++..
T Consensus 2 l~~~~l~~~~~~----~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 65 (232)
T PRK10771 2 LKLTDITWLYHH----LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTT 65 (232)
T ss_pred eEEEEEEEEECC----cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCc
Confidence 678999999953 22 38999999999999999999999999999999999999999999998753
No 226
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.56 E-value=8.3e-15 Score=140.28 Aligned_cols=70 Identities=33% Similarity=0.592 Sum_probs=63.2
Q ss_pred CCeEEEEeeeEEeccc-------cccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219 210 GDVLVVKRLFKIYANS-------KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~-------~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~ 279 (288)
...+.++|++|.|..+ .+...||+|+||++++||++||+|++||||||+.|+|+|+.+|++|++.++|.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~ 354 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD 354 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc
Confidence 3468899999999742 133579999999999999999999999999999999999999999999999987
No 227
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=7.5e-15 Score=131.30 Aligned_cols=66 Identities=18% Similarity=0.306 Sum_probs=60.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~ 281 (288)
.+.++++++.|++ +++++|+||++++||++||+|+|||||||++|+|+|+.+ |++|+|+++|.++.
T Consensus 10 ~l~i~~v~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 80 (264)
T PRK14243 10 VLRTENLNVYYGS----FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLY 80 (264)
T ss_pred EEEEeeeEEEECC----EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcc
Confidence 6889999999953 469999999999999999999999999999999999976 48999999998874
No 228
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=6e-15 Score=131.45 Aligned_cols=64 Identities=27% Similarity=0.455 Sum_probs=58.1
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
.+.+.+++++|.|+ ++.+++|+||.+.+||++||+|+|||||||++++|+|+.+|++|++.++|
T Consensus 8 ~~~i~~~~~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G 71 (257)
T PRK14246 8 EDVFNISRLYLYIN----DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71 (257)
T ss_pred hhheeeeeEEEecC----CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcC
Confidence 34689999999995 35699999999999999999999999999999999999999998777766
No 229
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1.1e-14 Score=129.03 Aligned_cols=66 Identities=29% Similarity=0.435 Sum_probs=59.8
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC--CC---CCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KP---TSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~--~p---t~G~i~i~g~~i~ 281 (288)
.+.++++++.|++ +.+++|+||++++||++||+|+|||||||++++|+|+. +| ++|+|+++|.++.
T Consensus 5 ~l~~~~l~~~~~~----~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~ 75 (252)
T PRK14239 5 ILQVSDLSVYYNK----KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIY 75 (252)
T ss_pred eEEEEeeEEEECC----eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECc
Confidence 5889999999953 46999999999999999999999999999999999985 46 5999999999874
No 230
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.55 E-value=8.7e-15 Score=136.97 Aligned_cols=51 Identities=25% Similarity=0.435 Sum_probs=49.0
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
...+++|+||+|++||+++|+|+|||||||++|+|+|+.+|++|+|+++|.
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~ 86 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDG 86 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCE
Confidence 457999999999999999999999999999999999999999999999996
No 231
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.3e-14 Score=129.84 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=60.8
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEccccc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSI 280 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i 280 (288)
...+.+++++|.|++ +++++|+||++++||+.||+|+|||||||++++|+|+.+| ++|++.++|.++
T Consensus 14 ~~~l~~~~l~~~~~~----~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~ 85 (265)
T PRK14252 14 QQKSEVNKLNFYYGG----YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNV 85 (265)
T ss_pred CceEEEEEEEEEECC----eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccc
Confidence 346899999999953 4699999999999999999999999999999999999885 799999998765
No 232
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.3e-14 Score=128.70 Aligned_cols=66 Identities=17% Similarity=0.308 Sum_probs=60.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-----CceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-----~G~i~i~g~~i~ 281 (288)
.+.++++++.|++ +.+++|+||++++||+.||+|+|||||||++++|+|+.+|+ +|+|+++|.++.
T Consensus 4 ~l~~~~l~~~~~~----~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 4 KIKIRGVNFFYHK----HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIY 74 (251)
T ss_pred eEEEEEEEEEECC----eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcc
Confidence 5889999999953 56999999999999999999999999999999999999997 699999998875
No 233
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.1e-14 Score=129.93 Aligned_cols=66 Identities=26% Similarity=0.357 Sum_probs=60.5
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~ 281 (288)
.+.++|+++.|++ +++++|+||++++||++||+|+|||||||++|+|+|+.+| ++|+|.++|.++.
T Consensus 7 ~l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 7 AIKVKDLSFYYNT----SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred eEEEEEEEEEECC----eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecc
Confidence 5889999999953 4699999999999999999999999999999999999985 5899999999874
No 234
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.2e-14 Score=141.20 Aligned_cols=66 Identities=32% Similarity=0.574 Sum_probs=61.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|++|.|++ +.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++.
T Consensus 4 ~l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~ 69 (501)
T PRK11288 4 YLSFDGIGKTFPG----VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMR 69 (501)
T ss_pred eEEEeeeEEEECC----EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence 5889999999953 46999999999999999999999999999999999999999999999998874
No 235
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.5e-14 Score=130.10 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=60.9
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~ 281 (288)
..+.++|+++.|++ +.+++|+||.+++||+++|+|+|||||||++++|+|+.+| ++|++.++|.++.
T Consensus 19 ~~l~~~nl~~~~~~----~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 19 SVFEVEGVKVFYGG----FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred ceEEEeeEEEEeCC----eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 37899999999953 4699999999999999999999999999999999999863 6999999998874
No 236
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=9.6e-15 Score=142.10 Aligned_cols=66 Identities=30% Similarity=0.479 Sum_probs=61.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC--CCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p--t~G~i~i~g~~i~ 281 (288)
.+.++|++|.|+ ++++++|+||++++||++||+|+|||||||++|+|+|+.+| ++|+|+++|.++.
T Consensus 5 ~l~~~nl~~~~~----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 72 (506)
T PRK13549 5 LLEMKNITKTFG----GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ 72 (506)
T ss_pred eEEEeeeEEEeC----CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 588999999995 35699999999999999999999999999999999999996 8999999999875
No 237
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1e-14 Score=131.96 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=60.5
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~ 281 (288)
..+.++++++.|++ +++++|+||+|++||++||+|+|||||||++++|+|+.+ |++|+|.++|.++.
T Consensus 38 ~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 38 PHVVAKNFSIYYGE----FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred eEEEEeeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 46899999999953 469999999999999999999999999999999999864 49999999998874
No 238
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.55 E-value=1.2e-14 Score=130.72 Aligned_cols=67 Identities=28% Similarity=0.477 Sum_probs=60.8
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|+++.|+. ++.++++|+||.|++||++||+|+|||||||++++|+|+.+ ++|+|+++|.++.+
T Consensus 3 i~~~nls~~~~~--~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~ 69 (275)
T cd03289 3 MTVKDLTAKYTE--GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNS 69 (275)
T ss_pred EEEEEEEEEeCC--CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhh
Confidence 789999999964 23569999999999999999999999999999999999998 79999999998753
No 239
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.4e-14 Score=128.43 Aligned_cols=67 Identities=19% Similarity=0.336 Sum_probs=59.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC---CCC--CCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA---IKP--TSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~---~~p--t~G~i~i~g~~i~~ 282 (288)
.+.++++++.|+. +.+++|+||++++||++||+|+|||||||++|+|+|+ .+| ++|++.++|.++.+
T Consensus 3 ~l~~~~~~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 3 KIDARDVNFWYGD----FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYD 74 (250)
T ss_pred EEEEEEEEEEECC----EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccc
Confidence 4789999999953 5699999999999999999999999999999999997 455 58999999998753
No 240
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.55 E-value=1.1e-14 Score=142.35 Aligned_cols=69 Identities=28% Similarity=0.478 Sum_probs=63.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccch
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 283 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~ 283 (288)
.+.++|++..|++ ++++++|+||+++|||+++|+|+|||||||++|+|.|+++|++|+|.++|.|+++-
T Consensus 334 ~I~~~~vsf~Y~~---~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~ 402 (529)
T TIGR02868 334 TLELRDLSFGYPG---SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL 402 (529)
T ss_pred eEEEEEEEEecCC---CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH
Confidence 5999999999964 24699999999999999999999999999999999999999999999999988643
No 241
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.5e-14 Score=128.37 Aligned_cols=66 Identities=23% Similarity=0.415 Sum_probs=59.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC--C---CCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~--p---t~G~i~i~g~~i~ 281 (288)
.+.++++++.|+. +.+++|+||++.+||++||+|+|||||||++++|+|+.+ | ++|+|+++|.++.
T Consensus 5 ~l~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 75 (252)
T PRK14255 5 IITSSDVHLFYGK----FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY 75 (252)
T ss_pred eEEEEeEEEEECC----eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcc
Confidence 5789999999952 569999999999999999999999999999999999865 5 5999999999874
No 242
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.3e-14 Score=128.53 Aligned_cols=67 Identities=19% Similarity=0.359 Sum_probs=60.1
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~~ 282 (288)
.+.++++++.|+ ++++++|+||++++||++||+|+|||||||++++|+|+.+ |++|+|.++|.++.+
T Consensus 3 ~l~~~~v~~~~~----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 74 (250)
T PRK14266 3 RIEVENLNTYFD----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74 (250)
T ss_pred EEEEEeEEEEeC----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc
Confidence 477999999995 2569999999999999999999999999999999999864 489999999998753
No 243
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.54 E-value=1.1e-14 Score=141.24 Aligned_cols=66 Identities=20% Similarity=0.306 Sum_probs=60.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|++|.|++ +.+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~ 68 (490)
T PRK10938 3 SLQISQGTFRLSD----TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHIT 68 (490)
T ss_pred eEEEEeEEEEcCC----eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccc
Confidence 4789999999953 45999999999999999999999999999999999999999999999987653
No 244
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.54 E-value=1.3e-14 Score=145.95 Aligned_cols=70 Identities=24% Similarity=0.463 Sum_probs=64.6
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..++++|++..|++ +++++++|+||+|++||++||+|+|||||||++|+|+|+++|++|+|.+||.|+++
T Consensus 450 ~~I~~~nvsf~Y~~--~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 519 (686)
T TIGR03797 450 GAIEVDRVTFRYRP--DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG 519 (686)
T ss_pred ceEEEEEEEEEcCC--CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCc
Confidence 35999999999964 24679999999999999999999999999999999999999999999999999864
No 245
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.6e-14 Score=143.74 Aligned_cols=71 Identities=27% Similarity=0.413 Sum_probs=63.0
Q ss_pred CeEEEEeeeEEecccc-------ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSK-------DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~-------~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..+.++|++|.|+..+ +++.+++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 3689999999996311 1246999999999999999999999999999999999999999999999998875
No 246
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.7e-14 Score=143.66 Aligned_cols=70 Identities=27% Similarity=0.424 Sum_probs=62.5
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
..+.++|+++.|+..+++.++++|+||++++||++||+|+|||||||++|+|+|+++|++|+|.++|.++
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~ 80 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLL 80 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEe
Confidence 4789999999996432235799999999999999999999999999999999999999999999998644
No 247
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.54 E-value=8.1e-15 Score=136.46 Aligned_cols=55 Identities=36% Similarity=0.694 Sum_probs=52.3
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
++.+++|+||+|++||+++|+|+|||||||++++|+|+.+|++|+|+++|.++..
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~ 59 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMK 59 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCc
Confidence 4679999999999999999999999999999999999999999999999998864
No 248
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=2.1e-14 Score=118.33 Aligned_cols=64 Identities=31% Similarity=0.584 Sum_probs=58.7
Q ss_pred EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
++++++.|++ +.+++++++++++||+.+|+|+|||||||++++|+|.++|++|+++++|.++..
T Consensus 2 ~~~~~~~~~~----~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~ 65 (157)
T cd00267 2 IENLSFRYGG----RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK 65 (157)
T ss_pred eEEEEEEeCC----eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEccc
Confidence 5788899853 469999999999999999999999999999999999999999999999987653
No 249
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.3e-14 Score=144.69 Aligned_cols=62 Identities=23% Similarity=0.369 Sum_probs=58.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
+.++|++|.|+ ++.+++|+||.|++||++||+|+|||||||++|+|+|+.+|++|+|.++|.
T Consensus 2 i~i~nls~~~g----~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~ 63 (638)
T PRK10636 2 IVFSSLQIRRG----VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN 63 (638)
T ss_pred EEEEEEEEEeC----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC
Confidence 67999999995 357999999999999999999999999999999999999999999999875
No 250
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.4e-14 Score=128.40 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=58.7
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~ 281 (288)
-.++++++.|+ ++++++|+||++.+||++||+|+|||||||++++|+|+.+ |++|+|.++|.++.
T Consensus 6 ~~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 75 (251)
T PRK14244 6 ASVKNLNLWYG----SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75 (251)
T ss_pred EEeeeEEEEEC----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehH
Confidence 45889999995 3579999999999999999999999999999999999986 47999999998874
No 251
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.53 E-value=2e-14 Score=140.51 Aligned_cols=70 Identities=23% Similarity=0.412 Sum_probs=62.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~ 281 (288)
.+.++++++.|++.++.+++++|+||++++||++||+|+|||||||++|+|+|+++| ++|+|.++|.++.
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecc
Confidence 588999999996321235799999999999999999999999999999999999997 7999999999874
No 252
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2.3e-14 Score=127.87 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=60.8
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-----CceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-----~G~i~i~g~~i~ 281 (288)
.+.++|+++.|++ +.+++|+||.+++||++||+|+|||||||++++|+|+.+|+ +|++.++|.++.
T Consensus 7 ~l~~~nl~~~~~~----~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~ 77 (261)
T PRK14258 7 AIKVNNLSFYYDT----QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIY 77 (261)
T ss_pred eEEEeeEEEEeCC----eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhh
Confidence 5889999999953 46999999999999999999999999999999999999996 899999998874
No 253
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.53 E-value=7.9e-15 Score=124.42 Aligned_cols=72 Identities=26% Similarity=0.450 Sum_probs=62.1
Q ss_pred EEEeeeEEecc-ccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchhh
Q psy7219 214 VVKRLFKIYAN-SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 285 (288)
Q Consensus 214 ~~~~l~k~y~~-~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~~ 285 (288)
.+.+..|.+.+ ...+++|++++|++|++||.+-++|.|||||||+++.++|..+||+|+|.|+|.++.+...
T Consensus 3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~ 75 (263)
T COG1101 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75 (263)
T ss_pred ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCH
Confidence 45566666643 2345789999999999999999999999999999999999999999999999999976543
No 254
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.52 E-value=1.7e-14 Score=145.71 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=64.6
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..++++|++..|++ .++++++|+||+|++||.+||+|+|||||||++|+|+|+++|++|+|.++|.|+++
T Consensus 476 ~~I~~~~vsf~y~~--~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 545 (710)
T TIGR03796 476 GYVELRNITFGYSP--LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREE 545 (710)
T ss_pred CeEEEEEEEEecCC--CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHH
Confidence 36999999999974 24679999999999999999999999999999999999999999999999999864
No 255
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.52 E-value=2.1e-14 Score=139.46 Aligned_cols=66 Identities=35% Similarity=0.589 Sum_probs=60.6
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC--CCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p--t~G~i~i~g~~i~~ 282 (288)
+.++|++|.|+ ++++++|+||++++||++||+|+|||||||++|+|+|+.+| ++|+|+++|.++.+
T Consensus 2 l~i~~l~~~~~----~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~ 69 (500)
T TIGR02633 2 LEMKGIVKTFG----GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKA 69 (500)
T ss_pred EEEEeEEEEeC----CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCC
Confidence 67899999995 25699999999999999999999999999999999999997 79999999988753
No 256
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.52 E-value=1.4e-14 Score=140.52 Aligned_cols=62 Identities=27% Similarity=0.411 Sum_probs=57.7
Q ss_pred EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+|++|.|+ ++++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 2 ~nl~~~~~----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 63 (491)
T PRK10982 2 SNISKSFP----GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEID 63 (491)
T ss_pred CceEEEeC----CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECC
Confidence 67899995 356999999999999999999999999999999999999999999999998874
No 257
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.52 E-value=2.2e-14 Score=140.16 Aligned_cols=69 Identities=35% Similarity=0.530 Sum_probs=63.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|+++.|++ +++++++|+||+++|||+++|+|+|||||||++|+|+|+++|++|+|.++|.++++
T Consensus 320 ~i~~~~v~f~y~~--~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~ 388 (529)
T TIGR02857 320 SLEFSGLSVAYPG--RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLAD 388 (529)
T ss_pred eEEEEEEEEECCC--CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhh
Confidence 6999999999964 23579999999999999999999999999999999999999999999999998864
No 258
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.52 E-value=1.1e-14 Score=121.81 Aligned_cols=68 Identities=31% Similarity=0.474 Sum_probs=63.2
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc-ccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN-HSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g-~~i~~ 282 (288)
..+.+++++.+|+ ++.|++++||.|.+||.=.|+|||||||||++..|||..+|+.|+++++| .++++
T Consensus 4 ~iL~~~~vsVsF~----GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~ 72 (249)
T COG4674 4 IILYLDGVSVSFG----GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTK 72 (249)
T ss_pred ceEEEeceEEEEc----ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhcc
Confidence 4688999999995 58899999999999999999999999999999999999999999999999 67754
No 259
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.52 E-value=2.5e-14 Score=141.33 Aligned_cols=69 Identities=26% Similarity=0.459 Sum_probs=64.0
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++..|++ +++++++|+|+++++||+++|+|+||+||||++|+|+|+++|++|+|.++|.++++
T Consensus 341 ~i~~~~vsf~y~~--~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~ 409 (582)
T PRK11176 341 DIEFRNVTFTYPG--KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRD 409 (582)
T ss_pred eEEEEEEEEecCC--CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhh
Confidence 5999999999964 24679999999999999999999999999999999999999999999999998864
No 260
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.51 E-value=1.4e-14 Score=116.30 Aligned_cols=51 Identities=33% Similarity=0.638 Sum_probs=49.4
Q ss_pred eeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 232 v~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
++|+|+.+++||+++|+|+||+||||++++|+|..+|++|+|.++|.++.+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~ 51 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISD 51 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTT
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccc
Confidence 689999999999999999999999999999999999999999999999876
No 261
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=4.6e-14 Score=130.05 Aligned_cols=71 Identities=21% Similarity=0.431 Sum_probs=63.8
Q ss_pred CCCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-----CCCceEEEcccccc
Q psy7219 209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 281 (288)
Q Consensus 209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-----pt~G~i~i~g~~i~ 281 (288)
....+.++|+++.|.+ +.+++++|+||+|++||++||+|+|||||||++++|.|+.+ |++|+|.++|.++.
T Consensus 77 ~~~~i~~~nls~~y~~--~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 77 HANVFEIRNFNFWYMN--RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred cCceEEEEeeEEEecC--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3457999999999964 23569999999999999999999999999999999999986 57999999999985
No 262
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.51 E-value=3.4e-14 Score=140.24 Aligned_cols=70 Identities=29% Similarity=0.502 Sum_probs=64.2
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.++|+++.|++ +++++++|+||++++||+++|+|+|||||||++|+|+|+++|++|+|.++|.++++
T Consensus 337 ~~i~~~~v~f~y~~--~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~ 406 (574)
T PRK11160 337 VSLTLNNVSFTYPD--QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD 406 (574)
T ss_pred CeEEEEEEEEECCC--CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 35999999999964 23579999999999999999999999999999999999999999999999998764
No 263
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.51 E-value=3.7e-14 Score=139.23 Aligned_cols=68 Identities=29% Similarity=0.465 Sum_probs=63.3
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.++++|+++.|++ ++++++|+||++++||+++|+|+|||||||++|+|+|+++|++|+|.++|.++++
T Consensus 322 ~i~~~~v~f~y~~---~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 389 (547)
T PRK10522 322 TLELRNVTFAYQD---NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA 389 (547)
T ss_pred eEEEEEEEEEeCC---CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCC
Confidence 5899999999963 3469999999999999999999999999999999999999999999999999864
No 264
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.51 E-value=4.5e-14 Score=142.33 Aligned_cols=69 Identities=28% Similarity=0.513 Sum_probs=63.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.++++|++..|++ .++++++|+||+|++||+++|+|+|||||||++|+|+|+++|++|+|.++|.|+++
T Consensus 463 ~I~~~~vsf~Y~~--~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~ 531 (694)
T TIGR03375 463 EIEFRNVSFAYPG--QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531 (694)
T ss_pred eEEEEEEEEEeCC--CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 5999999999964 24579999999999999999999999999999999999999999999999998764
No 265
>KOG0058|consensus
Probab=99.50 E-value=2.7e-14 Score=139.17 Aligned_cols=71 Identities=28% Similarity=0.467 Sum_probs=66.3
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..++.+|++..|+. +++.++++|+||+|+|||.++|+||||+||||..++|-.+|+|++|+|.+||+||++
T Consensus 464 G~IeF~~VsFaYP~-Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~ 534 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPT-RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISD 534 (716)
T ss_pred ceEEEEEeeeecCC-CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhh
Confidence 46999999999986 346789999999999999999999999999999999999999999999999999864
No 266
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.50 E-value=3.1e-14 Score=138.68 Aligned_cols=64 Identities=33% Similarity=0.477 Sum_probs=59.3
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|+++.|. .+++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++.
T Consensus 265 ~l~~~~l~~~~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~ 328 (510)
T PRK09700 265 VFEVRNVTSRDR------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS 328 (510)
T ss_pred EEEEeCccccCC------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECC
Confidence 688999998752 3899999999999999999999999999999999999999999999998774
No 267
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.50 E-value=4.3e-14 Score=136.95 Aligned_cols=66 Identities=26% Similarity=0.470 Sum_probs=60.2
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-CCceEEEccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSI 280 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-t~G~i~i~g~~i 280 (288)
..+.++|++|.|++ +.+++|+||.+++||++||+|+|||||||++|+|+|+.+| ++|+|+++|.++
T Consensus 259 ~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~ 325 (490)
T PRK10938 259 PRIVLNNGVVSYND----RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRR 325 (490)
T ss_pred ceEEEeceEEEECC----eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccC
Confidence 36899999999953 4699999999999999999999999999999999998876 799999999875
No 268
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.50 E-value=4e-14 Score=142.94 Aligned_cols=71 Identities=23% Similarity=0.428 Sum_probs=64.5
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..++++|++..|++. +++++++|+||+++|||.++|+|+||+||||++|+|+|+++|++|+|.++|.|+++
T Consensus 477 ~~I~~~nVsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~ 547 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR-PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQ 547 (711)
T ss_pred CeEEEEEEEEECCCC-CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence 359999999999742 23579999999999999999999999999999999999999999999999998754
No 269
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=4.1e-14 Score=138.42 Aligned_cols=62 Identities=34% Similarity=0.639 Sum_probs=57.8
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
+.++|++|.|+ ++++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.
T Consensus 2 l~i~~ls~~~~----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~ 63 (530)
T PRK15064 2 LSTANITMQFG----AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN 63 (530)
T ss_pred EEEEEEEEEeC----CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC
Confidence 67899999995 357999999999999999999999999999999999999999999999863
No 270
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.50 E-value=1.6e-14 Score=128.60 Aligned_cols=62 Identities=26% Similarity=0.501 Sum_probs=54.5
Q ss_pred EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEE-----------Ecccccc
Q psy7219 216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----------VMNHSIR 281 (288)
Q Consensus 216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~-----------i~g~~i~ 281 (288)
.+++|.|++ .+.+++|+|+ +++||++||+|+|||||||++|+|+|+++|++|+|. ++|.++.
T Consensus 4 ~~~~~~y~~---~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 4 DEPVHRYGP---NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred cCcceeecC---cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhh
Confidence 467888953 2369999995 999999999999999999999999999999999996 7787764
No 271
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=3.5e-14 Score=122.93 Aligned_cols=59 Identities=25% Similarity=0.434 Sum_probs=53.8
Q ss_pred EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
-+|+|.|++ +.+ |+||++++ |++||+|+|||||||++++|+|+.+|++|++.++|.++.
T Consensus 4 ~~l~~~~~~----~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 62 (214)
T cd03297 4 VDIEKRLPD----FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLF 62 (214)
T ss_pred eeeeEecCC----eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecc
Confidence 489999964 333 99999999 999999999999999999999999999999999998874
No 272
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=3.1e-14 Score=118.47 Aligned_cols=61 Identities=30% Similarity=0.595 Sum_probs=57.2
Q ss_pred ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchhhhc
Q psy7219 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV 287 (288)
Q Consensus 227 ~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~~~v 287 (288)
++...+.++||++.+||.+-+.||||+||||++|+|+|+.+|++|+|+++|.++++++++.
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~ 73 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY 73 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhH
Confidence 4567999999999999999999999999999999999999999999999999999888754
No 273
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.50 E-value=5.4e-14 Score=137.29 Aligned_cols=68 Identities=37% Similarity=0.640 Sum_probs=59.9
Q ss_pred CeEEEEeeeEEecc-ccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc-cc
Q psy7219 211 DVLVVKRLFKIYAN-SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM-NH 278 (288)
Q Consensus 211 ~~l~~~~l~k~y~~-~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~-g~ 278 (288)
..+.++|+++.|++ +++++++++|+||.|++||++||+|+|||||||++|+|+|+.+|++|+|+++ |.
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~ 347 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGD 347 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCC
Confidence 36899999999953 1123569999999999999999999999999999999999999999999996 53
No 274
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.50 E-value=4.6e-14 Score=138.46 Aligned_cols=70 Identities=27% Similarity=0.507 Sum_probs=64.1
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.++|+++.|++ +++++++|+||++++||++||+|+|||||||++++|+|+++|++|++.++|.++.+
T Consensus 315 ~~i~~~~v~~~y~~--~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 315 GHLSVENVTIVPPG--GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ 384 (544)
T ss_pred CeEEEEEEEEEcCC--CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhh
Confidence 35999999999964 23579999999999999999999999999999999999999999999999998754
No 275
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.49 E-value=5.8e-14 Score=138.08 Aligned_cols=72 Identities=21% Similarity=0.344 Sum_probs=64.4
Q ss_pred CeEEEEeeeEEeccccc-cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~-~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..++++|+++.|+++++ ++++++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.++++
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~ 408 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSA 408 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 35899999999975211 2469999999999999999999999999999999999999999999999999864
No 276
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.49 E-value=2.8e-14 Score=117.15 Aligned_cols=72 Identities=24% Similarity=0.474 Sum_probs=65.8
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.++.+++++|+-+.......+++++++.|++||.+||+|++|+||||++-+++|+..|++|+|++.|+++.+
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ 76 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHK 76 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhh
Confidence 378899999988765556689999999999999999999999999999999999999999999999999764
No 277
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=3.6e-14 Score=138.10 Aligned_cols=69 Identities=29% Similarity=0.484 Sum_probs=61.6
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-CCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-pt~G~i~i~g~~i~ 281 (288)
.+.++|++|.|+.. +++++++|+||+|++||++||+|+|||||||++|+|+|+.+ |++|+|+++|.++.
T Consensus 259 ~l~~~~l~~~~~~~-~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~ 328 (506)
T PRK13549 259 ILEVRNLTAWDPVN-PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVK 328 (506)
T ss_pred eEEEecCccccccc-cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECC
Confidence 68999999999421 13569999999999999999999999999999999999999 59999999998874
No 278
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.49 E-value=4.4e-14 Score=142.72 Aligned_cols=68 Identities=24% Similarity=0.406 Sum_probs=63.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|+++.|+. ++++++|+||+|++||.+||+|+|||||||++|+|+|+++|++|+|+++|.|+++
T Consensus 473 ~I~~~~vsf~y~~---~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 540 (708)
T TIGR01193 473 DIVINDVSYSYGY---GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKD 540 (708)
T ss_pred cEEEEEEEEEcCC---CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHH
Confidence 5899999999963 3579999999999999999999999999999999999999999999999998854
No 279
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.49 E-value=9.5e-14 Score=125.33 Aligned_cols=61 Identities=23% Similarity=0.514 Sum_probs=56.4
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
..+.++++++. .+++++|+||.|++||++||+|+|||||||++++|+|+++|++|+|.++|
T Consensus 38 ~~l~i~nls~~------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g 98 (282)
T cd03291 38 NNLFFSNLCLV------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG 98 (282)
T ss_pred CeEEEEEEEEe------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 46899999884 14699999999999999999999999999999999999999999999987
No 280
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.49 E-value=5.5e-14 Score=140.25 Aligned_cols=63 Identities=22% Similarity=0.425 Sum_probs=58.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
.+.+++++|.|+ ++++++|+||.|++||++||+|+|||||||++|+|+|+.+|++|+|.++|.
T Consensus 3 ~l~i~~ls~~~~----~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~ 65 (635)
T PRK11147 3 LISIHGAWLSFS----DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD 65 (635)
T ss_pred EEEEeeEEEEeC----CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC
Confidence 478999999995 357999999999999999999999999999999999999999999999874
No 281
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.48 E-value=5.4e-14 Score=121.67 Aligned_cols=66 Identities=30% Similarity=0.518 Sum_probs=61.6
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
..+..+|++..|+ ++++++|+|+.|++||.-.|+|+|||||||++++++|+++|++|.+.+.|+..
T Consensus 30 ~li~l~~v~v~r~----gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~ 95 (257)
T COG1119 30 PLIELKNVSVRRN----GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRF 95 (257)
T ss_pred ceEEecceEEEEC----CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeec
Confidence 4689999999995 47899999999999999999999999999999999999999999999988764
No 282
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.48 E-value=8.5e-14 Score=133.81 Aligned_cols=68 Identities=32% Similarity=0.521 Sum_probs=60.4
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~ 279 (288)
..+.++|+++.|++. ..+++++|+||.+++||++||+|+|||||||++++|+|+.+|++|+|.++|.+
T Consensus 20 ~mL~lknL~~~~~~~-~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~ 87 (549)
T PRK13545 20 PFDKLKDLFFRSKDG-EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA 87 (549)
T ss_pred ceeEEEEEEEecCCC-ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe
Confidence 358888998888642 12569999999999999999999999999999999999999999999999865
No 283
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=7e-14 Score=130.05 Aligned_cols=62 Identities=16% Similarity=0.314 Sum_probs=55.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.+ |++|.|++ +. + |+||++++||+++|+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 2 l~~-~l~k~~~~----~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~ 63 (352)
T PRK11144 2 LEL-NFKQQLGD----LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLF 63 (352)
T ss_pred eEE-EEEEEeCC----EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 345 89999953 22 3 899999999999999999999999999999999999999999998875
No 284
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.48 E-value=6.5e-14 Score=137.74 Aligned_cols=63 Identities=32% Similarity=0.499 Sum_probs=58.3
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
.+.++|++|.|++ ++++++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|.+++
T Consensus 6 ~l~i~~l~~~y~~---~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~ 68 (556)
T PRK11819 6 IYTMNRVSKVVPP---KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP 68 (556)
T ss_pred EEEEeeEEEEeCC---CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 5889999999952 35799999999999999999999999999999999999999999999864
No 285
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.48 E-value=4.9e-14 Score=136.92 Aligned_cols=69 Identities=29% Similarity=0.483 Sum_probs=61.3
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-CCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-t~G~i~i~g~~i~ 281 (288)
.+.++|+++.|++. +++.+++|+||+|++||++||+|+|||||||++|+|+|..+| ++|+|.++|.++.
T Consensus 257 ~l~~~~l~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~ 326 (500)
T TIGR02633 257 ILEARNLTCWDVIN-PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVD 326 (500)
T ss_pred eEEEeCCccccccc-ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECC
Confidence 68999999988421 124699999999999999999999999999999999999995 8999999998874
No 286
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.48 E-value=6.2e-14 Score=130.55 Aligned_cols=59 Identities=20% Similarity=0.410 Sum_probs=54.1
Q ss_pred eeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 217 RLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 217 ~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
|++|.|++ +. + |+||++++||+++|+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 4 ~l~~~~~~----~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~ 62 (354)
T TIGR02142 4 RFSKRLGD----FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLF 62 (354)
T ss_pred EEEEEECC----EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc
Confidence 78999953 33 4 899999999999999999999999999999999999999999998875
No 287
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=8.5e-14 Score=136.18 Aligned_cols=64 Identities=31% Similarity=0.535 Sum_probs=59.3
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
..+.++|++|.|++ +.+++|+||.+++||++||+|+|||||||++|+|+|+.+|++|+|.++|.
T Consensus 318 ~~l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~ 381 (530)
T PRK15064 318 NALEVENLTKGFDN----GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN 381 (530)
T ss_pred ceEEEEeeEEeeCC----ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc
Confidence 36899999999953 46999999999999999999999999999999999999999999999873
No 288
>KOG0057|consensus
Probab=99.48 E-value=7.2e-14 Score=132.33 Aligned_cols=70 Identities=23% Similarity=0.459 Sum_probs=64.5
Q ss_pred CCCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.++.++.+|++..|++ ++++++++||+|++||.+||+|+|||||||.+|+|-++.+ .+|+|+|+|+++++
T Consensus 348 ~~~~I~F~dV~f~y~~---k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~ 417 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYGP---KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKE 417 (591)
T ss_pred CCCcEEEEeeEEEeCC---CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhh
Confidence 3456999999999974 4569999999999999999999999999999999999999 99999999999865
No 289
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.48 E-value=7.2e-14 Score=137.80 Aligned_cols=69 Identities=20% Similarity=0.402 Sum_probs=63.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.+++++..|+. +++++++|+||++++||+++|+|+|||||||++++|+|+++|++|+|.++|.++++
T Consensus 313 ~I~~~~v~~~y~~--~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~ 381 (569)
T PRK10789 313 ELDVNIRQFTYPQ--TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTK 381 (569)
T ss_pred cEEEEEEEEECCC--CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhh
Confidence 4889999999964 23579999999999999999999999999999999999999999999999998754
No 290
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.48 E-value=5.1e-14 Score=117.93 Aligned_cols=67 Identities=28% Similarity=0.513 Sum_probs=61.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.+++++-+|++ .+..+++|+|++|.+||.+.+|||+||||||++++++|+.+|++|+|.+||..|.
T Consensus 4 l~~~~~sl~y~g--~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~ 70 (259)
T COG4525 4 LNVSHLSLSYEG--KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE 70 (259)
T ss_pred eehhheEEecCC--cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEecc
Confidence 567888999975 3356999999999999999999999999999999999999999999999999875
No 291
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=9e-14 Score=138.68 Aligned_cols=63 Identities=32% Similarity=0.550 Sum_probs=58.5
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
..+.++|++|.|+ ++.+++|+||.|++||++||+|+|||||||++|+|+|+.+|++|+|.+++
T Consensus 311 ~~l~~~~l~~~y~----~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 373 (638)
T PRK10636 311 PLLKMEKVSAGYG----DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK 373 (638)
T ss_pred ceEEEEeeEEEeC----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC
Confidence 4689999999995 35699999999999999999999999999999999999999999999863
No 292
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.47 E-value=8.4e-14 Score=137.92 Aligned_cols=68 Identities=19% Similarity=0.304 Sum_probs=63.2
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+++++++..|++ ++++++|+||++++||.+||+|+|||||||++|+|+|+++|++|+|.++|.++++
T Consensus 340 ~i~~~~v~f~y~~---~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~ 407 (592)
T PRK10790 340 RIDIDNVSFAYRD---DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSS 407 (592)
T ss_pred eEEEEEEEEEeCC---CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhh
Confidence 5899999999963 3569999999999999999999999999999999999999999999999998863
No 293
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.47 E-value=1e-13 Score=136.36 Aligned_cols=63 Identities=35% Similarity=0.635 Sum_probs=58.4
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
..+.++++++.|++ +.+++|+||+|++||++||+|+|||||||++++|+|+.+|++|+|++++
T Consensus 323 ~~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~ 385 (556)
T PRK11819 323 KVIEAENLSKSFGD----RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE 385 (556)
T ss_pred eEEEEEeEEEEECC----eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 36899999999953 5699999999999999999999999999999999999999999999954
No 294
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.8e-14 Score=132.31 Aligned_cols=70 Identities=24% Similarity=0.467 Sum_probs=65.2
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++|++..|++ ++.++++|+||++++||.++|+|++||||||+++.|+|.++|++|+|..+|.++..
T Consensus 335 ~~l~~~~vsF~y~~--~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 335 QALELRNVSFTYPG--QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404 (573)
T ss_pred ceeeeccceeecCC--CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhh
Confidence 37899999999986 44579999999999999999999999999999999999999999999999988764
No 295
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.47 E-value=8.5e-14 Score=140.33 Aligned_cols=70 Identities=23% Similarity=0.419 Sum_probs=64.2
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..++++|+++.|++ +++++++|+||++++||+++|+|+|||||||++|+|+|+++|++|+|.++|.++++
T Consensus 454 ~~i~~~~vsf~y~~--~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~ 523 (694)
T TIGR01846 454 GAITFENIRFRYAP--DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAI 523 (694)
T ss_pred CeEEEEEEEEEcCC--CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhh
Confidence 35999999999964 23569999999999999999999999999999999999999999999999999864
No 296
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.47 E-value=1e-13 Score=138.26 Aligned_cols=62 Identities=31% Similarity=0.417 Sum_probs=57.8
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 276 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~ 276 (288)
..+.++|+++.|++ +++++|+||.|++||++||+|+|||||||++|+|+|+.+|++|+|.++
T Consensus 318 ~~l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~ 379 (635)
T PRK11147 318 IVFEMENVNYQIDG----KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG 379 (635)
T ss_pred ceEEEeeeEEEECC----eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC
Confidence 36899999999953 569999999999999999999999999999999999999999999984
No 297
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=9.8e-14 Score=118.90 Aligned_cols=68 Identities=25% Similarity=0.375 Sum_probs=61.2
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC--CCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~--~pt~G~i~i~g~~i~~ 282 (288)
.+.++||+..-.+ ++.+++++|++|++||+.+|+|||||||||+.+.|+|.. ++|+|+|.++|.||.+
T Consensus 3 ~L~I~dLhv~v~~---~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~ 72 (251)
T COG0396 3 MLEIKDLHVEVEG---KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILE 72 (251)
T ss_pred eeEEeeeEEEecC---chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccccc
Confidence 4788999887643 258999999999999999999999999999999999987 8999999999999864
No 298
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.47 E-value=9.6e-14 Score=136.47 Aligned_cols=64 Identities=31% Similarity=0.479 Sum_probs=58.7
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
..+.++|++|.|++ ++++++|+||++++||++||+|+|||||||++++|+|+.+|++|+|.+++
T Consensus 3 ~~i~~~nls~~~~~---~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~ 66 (552)
T TIGR03719 3 YIYTMNRVSKVVPP---KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP 66 (552)
T ss_pred EEEEEeeEEEecCC---CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 36889999999952 35799999999999999999999999999999999999999999999875
No 299
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.46 E-value=1.1e-13 Score=136.98 Aligned_cols=68 Identities=26% Similarity=0.436 Sum_probs=62.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|+++.|++ ++++++|+||++++||++||+|+|||||||++++|+|+++|++|+|.++|.++.+
T Consensus 334 ~i~~~~v~~~y~~---~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 401 (585)
T TIGR01192 334 AVEFRHITFEFAN---SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT 401 (585)
T ss_pred eEEEEEEEEECCC---CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhh
Confidence 5899999999963 2468999999999999999999999999999999999999999999999998754
No 300
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.46 E-value=1.3e-13 Score=135.49 Aligned_cols=63 Identities=35% Similarity=0.608 Sum_probs=58.3
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
..+.++|+++.|++ +.+++|+||.|++||++||+|+|||||||++++|+|+.+|++|+|++++
T Consensus 321 ~~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~ 383 (552)
T TIGR03719 321 KVIEAENLSKGFGD----KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE 383 (552)
T ss_pred eEEEEeeEEEEECC----eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC
Confidence 36899999999953 5699999999999999999999999999999999999999999999854
No 301
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=7.9e-14 Score=133.33 Aligned_cols=68 Identities=31% Similarity=0.548 Sum_probs=61.8
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+..+|+++.|++ ++++++|+||++++||.++|+|+|||||||++++|.|+.+|++|+|.+||.+.++
T Consensus 320 ei~~~~l~~~y~~---g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~ 387 (559)
T COG4988 320 EISLENLSFRYPD---GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRD 387 (559)
T ss_pred eeeecceEEecCC---CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccc
Confidence 3556699999975 3489999999999999999999999999999999999999999999999998753
No 302
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.46 E-value=1.5e-13 Score=135.71 Aligned_cols=71 Identities=27% Similarity=0.467 Sum_probs=64.1
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..++++|++..|+.. +++++++|+||+++|||+++|+|+||+||||++|.|+|+++|++|+|.++|.++++
T Consensus 336 ~~i~~~~v~f~y~~~-~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~ 406 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR-PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQ 406 (576)
T ss_pred ceEEEEEEEEECCCC-CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence 358999999999642 22579999999999999999999999999999999999999999999999988753
No 303
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.46 E-value=1.7e-13 Score=137.01 Aligned_cols=71 Identities=27% Similarity=0.454 Sum_probs=63.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|+++.|+..++.+++++|+||++++||+.+|+|+||+||||++|+|+|+.+|++|++.++|.++.+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~ 74 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVAT 74 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCc
Confidence 58899999999642223579999999999999999999999999999999999999999999999998764
No 304
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.46 E-value=1e-13 Score=135.55 Aligned_cols=69 Identities=32% Similarity=0.479 Sum_probs=61.0
Q ss_pred eEEEEeeeEEecccc-------ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSK-------DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~-------~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|+++.|+... +++.+++|+||+|++||++||+|+|||||||++|+|+|+.+ ++|+|+++|.++.
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLH 350 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcc
Confidence 588999999995211 13579999999999999999999999999999999999985 8999999998874
No 305
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1.1e-13 Score=134.16 Aligned_cols=65 Identities=28% Similarity=0.520 Sum_probs=59.7
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..+.++|+++.+ +.+++|+||.|++||++||+|+|||||||++|+|+|+.+|++|+|+++|.++.
T Consensus 249 ~~i~~~~l~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 313 (491)
T PRK10982 249 VILEVRNLTSLR------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN 313 (491)
T ss_pred cEEEEeCccccc------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECC
Confidence 368899998863 24999999999999999999999999999999999999999999999998775
No 306
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.45 E-value=1.6e-13 Score=135.25 Aligned_cols=69 Identities=25% Similarity=0.460 Sum_probs=63.6
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.+.++|++..|++ +++++++|+||.+++||+++|+|+||+||||+++.|+|+++|++|+|+++|.+++
T Consensus 329 ~~i~~~~v~f~y~~--~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~ 397 (571)
T TIGR02203 329 GDVEFRNVTFRYPG--RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLA 397 (571)
T ss_pred CeEEEEEEEEEcCC--CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHH
Confidence 35999999999964 2357999999999999999999999999999999999999999999999998875
No 307
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.44 E-value=2e-13 Score=135.17 Aligned_cols=68 Identities=26% Similarity=0.484 Sum_probs=63.1
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++..|++ ++++++|+|++++|||.++|+|+|||||||++|+|+|+++|++|+|.++|.++.+
T Consensus 334 ~I~~~~vsf~y~~---~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~ 401 (588)
T PRK13657 334 AVEFDDVSFSYDN---SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRT 401 (588)
T ss_pred eEEEEEEEEEeCC---CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhh
Confidence 5899999999963 2469999999999999999999999999999999999999999999999998764
No 308
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.44 E-value=2e-13 Score=135.07 Aligned_cols=67 Identities=24% Similarity=0.426 Sum_probs=60.5
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++..|.+ ++++++|+||+++|||+++|+|+|||||||++++|+|++ |++|+|.++|.|+++
T Consensus 349 ~i~~~~vsf~~~~---~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~ 415 (588)
T PRK11174 349 TIEAEDLEILSPD---GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRE 415 (588)
T ss_pred eEEEEeeEEeccC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEeccc
Confidence 5899999865542 357999999999999999999999999999999999999 999999999998864
No 309
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.44 E-value=1.7e-13 Score=133.84 Aligned_cols=60 Identities=38% Similarity=0.619 Sum_probs=55.4
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC--CCCCceEEEc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVM 276 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~--~pt~G~i~i~ 276 (288)
+.++|++|.|+ ++++++|+||.+++||++||+|+|||||||++|+|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~----~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~ 62 (520)
T TIGR03269 1 IEVKNLTKKFD----GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYH 62 (520)
T ss_pred CEEEEEEEEEC----CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEe
Confidence 46899999995 256999999999999999999999999999999999997 7999999997
No 310
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.44 E-value=2.2e-13 Score=134.24 Aligned_cols=68 Identities=32% Similarity=0.539 Sum_probs=63.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.++.+|++..|++ ++++++|+||++++||.+||+|+|||||||+.+.|.|+++|++|+|.+||.|+++
T Consensus 328 ~I~f~~vsf~y~~---~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~ 395 (567)
T COG1132 328 SIEFENVSFSYPG---KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRD 395 (567)
T ss_pred eEEEEEEEEEcCC---CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhh
Confidence 4999999999963 4689999999999999999999999999999999999999999999999999864
No 311
>PLN03140 ABC transporter G family member; Provisional
Probab=99.43 E-value=6.4e-12 Score=134.74 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=60.0
Q ss_pred eEEEEeeeEEecccc---------ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC--CCceEEEccccc
Q psy7219 212 VLVVKRLFKIYANSK---------DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSI 280 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~---------~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p--t~G~i~i~g~~i 280 (288)
.+..+|++...+.+. +++.+++|+|+.+++||+++|+|+|||||||++++|+|..++ .+|++.++|++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 478899988775321 234799999999999999999999999999999999999773 689999999886
Q ss_pred c
Q psy7219 281 R 281 (288)
Q Consensus 281 ~ 281 (288)
.
T Consensus 947 ~ 947 (1470)
T PLN03140 947 K 947 (1470)
T ss_pred C
Confidence 5
No 312
>KOG0056|consensus
Probab=99.43 E-value=2.2e-13 Score=127.54 Aligned_cols=69 Identities=29% Similarity=0.464 Sum_probs=65.1
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..++.+|++..|.+ ++++++|+||.+.+|+.++|+||+||||||++++|-.+++.++|.|.++|+||+.
T Consensus 536 G~i~fsnvtF~Y~p---~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrn 604 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDP---GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRN 604 (790)
T ss_pred CeEEEEEeEEecCC---CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHH
Confidence 36999999999974 6899999999999999999999999999999999999999999999999999863
No 313
>PLN03130 ABC transporter C family member; Provisional
Probab=99.42 E-value=3.9e-13 Score=145.53 Aligned_cols=69 Identities=20% Similarity=0.395 Sum_probs=64.0
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.++++|++..|++ +.+++++|+||+|++||++||+|++||||||++++|.|+++|++|+|.++|.|+++
T Consensus 1237 ~I~f~nVsf~Y~~--~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130 1237 SIKFEDVVLRYRP--ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISK 1305 (1622)
T ss_pred cEEEEEEEEEeCC--CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEeccc
Confidence 5999999999964 23579999999999999999999999999999999999999999999999999864
No 314
>PLN03232 ABC transporter C family member; Provisional
Probab=99.41 E-value=4e-13 Score=144.93 Aligned_cols=69 Identities=20% Similarity=0.360 Sum_probs=63.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.++++|++..|++ +.+++++|+||+|++||.+||+|++||||||++++|.|+++|++|+|.+||.|+++
T Consensus 1234 ~I~f~nVsf~Y~~--~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232 1234 SIKFEDVHLRYRP--GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred cEEEEEEEEEECC--CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhh
Confidence 5999999999954 23579999999999999999999999999999999999999999999999999864
No 315
>PLN03073 ABC transporter F family; Provisional
Probab=99.41 E-value=5.2e-13 Score=134.37 Aligned_cols=64 Identities=22% Similarity=0.469 Sum_probs=58.7
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
..+.++++++.|++ ++.+++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|++++
T Consensus 507 ~~L~~~~ls~~y~~---~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~ 570 (718)
T PLN03073 507 PIISFSDASFGYPG---GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA 570 (718)
T ss_pred ceEEEEeeEEEeCC---CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC
Confidence 46899999999953 24699999999999999999999999999999999999999999999875
No 316
>KOG0055|consensus
Probab=99.40 E-value=3.6e-13 Score=138.21 Aligned_cols=70 Identities=23% Similarity=0.431 Sum_probs=65.2
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.++.+|++++|+.. ++.++++|+||.|++||+++|+|+||+||||.+++|.++++|++|+|+++|.|+++
T Consensus 350 ~ief~nV~FsYPsR-pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~ 419 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSR-PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRN 419 (1228)
T ss_pred ceEEEEEEecCCCC-CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchh
Confidence 58999999999863 35679999999999999999999999999999999999999999999999999864
No 317
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.40 E-value=4e-13 Score=130.24 Aligned_cols=62 Identities=34% Similarity=0.647 Sum_probs=58.2
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
.+.++++++.|+ +++.++|+|+.+.+||++||+|+|||||||++|+|+|...|++|+|...+
T Consensus 3 ~i~~~~ls~~~g----~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~ 64 (530)
T COG0488 3 MITLENLSLAYG----DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64 (530)
T ss_pred eEEEeeeEEeeC----CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC
Confidence 578999999994 47899999999999999999999999999999999999999999998875
No 318
>PLN03211 ABC transporter G-25; Provisional
Probab=99.40 E-value=9.1e-13 Score=131.70 Aligned_cols=64 Identities=22% Similarity=0.353 Sum_probs=55.4
Q ss_pred EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC--CceEEEccccccc
Q psy7219 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT--SGNAYVMNHSIRD 282 (288)
Q Consensus 215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt--~G~i~i~g~~i~~ 282 (288)
.++++|.|+ ++.+++|+|+.+++||++||+|||||||||++++|+|..+|+ +|+|.++|+++.+
T Consensus 71 ~~~l~~~~~----~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~ 136 (659)
T PLN03211 71 ISDETRQIQ----ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK 136 (659)
T ss_pred cccccccCC----CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch
Confidence 344555553 367999999999999999999999999999999999999986 8999999998753
No 319
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.40 E-value=6.6e-13 Score=119.28 Aligned_cols=69 Identities=28% Similarity=0.489 Sum_probs=62.0
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-C----CCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-P----TSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-p----t~G~i~i~g~~i~ 281 (288)
+.++||+..|...++...||+|+||+|++||++||+|.+|||||||.+.|.|+.+ | ++|+|.++|.++.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~ 75 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLL 75 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccc
Confidence 6799999999765445679999999999999999999999999999999999998 3 6799999999764
No 320
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.39 E-value=5.1e-13 Score=129.87 Aligned_cols=61 Identities=41% Similarity=0.624 Sum_probs=56.0
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++++++ .+++|+||.|++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 257 ~l~~~~l~~---------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~ 317 (501)
T PRK10762 257 RLKVDNLSG---------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVV 317 (501)
T ss_pred EEEEeCccc---------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 577888863 2799999999999999999999999999999999999999999999998874
No 321
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.39 E-value=4.1e-13 Score=119.04 Aligned_cols=50 Identities=30% Similarity=0.476 Sum_probs=47.5
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+++|+||++++||++||+|+|||||||++++|+|+.++ +|++.++|.++.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~ 60 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLE 60 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecC
Confidence 89999999999999999999999999999999999864 999999999875
No 322
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.39 E-value=4.7e-13 Score=109.67 Aligned_cols=55 Identities=31% Similarity=0.522 Sum_probs=52.6
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.+.++++||.|.+||..+|.||+||||||++|+++-+.+||+|++++.|.++++
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~ 69 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVST 69 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccc
Confidence 4579999999999999999999999999999999999999999999999999865
No 323
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.39 E-value=4.9e-13 Score=113.51 Aligned_cols=69 Identities=23% Similarity=0.391 Sum_probs=63.3
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC-----ceEEEccccccch
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-----GNAYVMNHSIRDS 283 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~-----G~i~i~g~~i~~~ 283 (288)
..+.+++|+..|+ ++.|++|+|++|+++++++++||+||||||++|++..+....+ |+|.++|++|.+.
T Consensus 6 ~~~~~~~l~~yYg----~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 6 PAIEVRDLNLYYG----DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEecceeEEEC----chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 4688999999995 5789999999999999999999999999999999999988876 9999999998764
No 324
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.39 E-value=7.8e-13 Score=142.91 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=64.5
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..++.+|++..|++ +..++++|+||+|++||++||+|++||||||+++.|.|+++|++|+|.++|.|+++
T Consensus 1283 g~I~f~nVsf~Y~~--~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~ 1352 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE--DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAK 1352 (1522)
T ss_pred CcEEEEEEEEEeCC--CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccc
Confidence 36999999999964 23479999999999999999999999999999999999999999999999999864
No 325
>PTZ00243 ABC transporter; Provisional
Probab=99.38 E-value=7.6e-13 Score=142.97 Aligned_cols=69 Identities=22% Similarity=0.334 Sum_probs=64.0
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++..|++ +..++++|+||+|++||.+||+|++||||||++++|.|+++|++|+|.++|.|+++
T Consensus 1308 ~I~f~nVsf~Y~~--~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~ 1376 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE--GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGA 1376 (1560)
T ss_pred eEEEEEEEEEeCC--CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc
Confidence 5999999999964 23469999999999999999999999999999999999999999999999999864
No 326
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.38 E-value=5.9e-13 Score=142.94 Aligned_cols=69 Identities=20% Similarity=0.455 Sum_probs=62.3
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE-cccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV-MNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i-~g~~i~ 281 (288)
.++++|+++.|+.. +++++++|+||.+++||++||+|+|||||||++++|+|+++|++|+|++ +|.+++
T Consensus 382 ~I~~~nVsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR-KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLK 451 (1466)
T ss_pred cEEEEEEEEEcCCC-CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchh
Confidence 58999999999742 2357999999999999999999999999999999999999999999999 567774
No 327
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.38 E-value=5.9e-13 Score=129.42 Aligned_cols=62 Identities=37% Similarity=0.553 Sum_probs=56.1
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.+++++. +.+++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|+++|+++.
T Consensus 257 ~l~~~~~~~--------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~ 318 (501)
T PRK11288 257 RLRLDGLKG--------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPID 318 (501)
T ss_pred EEEEecccc--------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECC
Confidence 577888752 14899999999999999999999999999999999999999999999998764
No 328
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.37 E-value=1.2e-12 Score=125.46 Aligned_cols=72 Identities=31% Similarity=0.466 Sum_probs=65.0
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC----CceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT----SGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt----~G~i~i~g~~i~~ 282 (288)
..++++||++.|....+...||+|+||+|.+||++||+|.+||||||+.+.|.|+.++. +|+|.++|.++..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~ 79 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG 79 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhc
Confidence 37899999999986544457999999999999999999999999999999999999998 7999999997653
No 329
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.36 E-value=1.4e-12 Score=108.28 Aligned_cols=64 Identities=25% Similarity=0.403 Sum_probs=55.9
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.+++++..|+. .--..++.|++||+++|+||+||||||++++++|++.|.+|+++++|.|...
T Consensus 2 l~L~~V~~~y~~------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~ 65 (231)
T COG3840 2 LALDDVRFSYGH------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTA 65 (231)
T ss_pred ccccceEEeeCc------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCc
Confidence 456778888842 4446889999999999999999999999999999999999999999998753
No 330
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.36 E-value=1.5e-12 Score=119.21 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=64.6
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc-hhhh
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDL 286 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~-~~~~ 286 (288)
+.++.+|++..|.. ..--|..+|++|++||.+=|+|.||+||||+.+.|||+++|++|+|++||.+++. ++++
T Consensus 321 ~~lelrnvrfay~~---~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~led 394 (546)
T COG4615 321 KTLELRNVRFAYQD---NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLED 394 (546)
T ss_pred cceeeeeeeeccCc---ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHH
Confidence 47999999999964 1246889999999999999999999999999999999999999999999999975 3343
No 331
>PRK13409 putative ATPase RIL; Provisional
Probab=99.36 E-value=3.5e-13 Score=133.06 Aligned_cols=62 Identities=26% Similarity=0.406 Sum_probs=54.8
Q ss_pred eeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEE-----------Eccccccc
Q psy7219 217 RLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----------VMNHSIRD 282 (288)
Q Consensus 217 ~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~-----------i~g~~i~~ 282 (288)
++++.|++ ...++++++ .+++||++||+|+|||||||++|+|+|+++|++|++. ++|.++.+
T Consensus 78 ~~~~~yg~---~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 78 EPVHRYGV---NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred CceEEecC---CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHH
Confidence 36788852 235999999 9999999999999999999999999999999999997 88988753
No 332
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.35 E-value=1.7e-12 Score=122.22 Aligned_cols=71 Identities=34% Similarity=0.569 Sum_probs=63.6
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
...+.++++...-+ ..+++.++|+||.+.+||..|++||+||||||+.|+|.|..+|++|+|+++|.+++.
T Consensus 332 ~g~L~Ve~l~~~PP--g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q 402 (580)
T COG4618 332 QGALSVERLTAAPP--GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ 402 (580)
T ss_pred CceeeEeeeeecCC--CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhc
Confidence 34688999977543 356799999999999999999999999999999999999999999999999999864
No 333
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.35 E-value=9.6e-13 Score=108.52 Aligned_cols=63 Identities=32% Similarity=0.563 Sum_probs=57.8
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
..+.+++++|.|++ ....+|+||+++|||+.||+|++|+||||++++|+|-..|++|++...-
T Consensus 5 PLL~V~~lsk~Yg~----~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~ 67 (258)
T COG4107 5 PLLSVSGLSKLYGP----GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRM 67 (258)
T ss_pred cceeehhhhhhhCC----CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEc
Confidence 36889999999964 4589999999999999999999999999999999999999999998754
No 334
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.34 E-value=1.3e-12 Score=115.81 Aligned_cols=51 Identities=35% Similarity=0.638 Sum_probs=45.9
Q ss_pred cceeeeEEEEe-----CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 230 PAVNQISFGVG-----RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 230 ~av~~is~~v~-----~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
..++++++++. +||++||+|+|||||||++++|+|+.+|++|+|.++|..+
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i 63 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV 63 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceE
Confidence 47778888886 7999999999999999999999999999999999998543
No 335
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.34 E-value=2.4e-12 Score=128.95 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=58.5
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
..++++|+++.|++ ++++++|+||++++||+++|+|+|||||||++|+|+|+++|++|++.+++
T Consensus 450 ~~i~~~nv~~~~~~---~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~ 513 (659)
T TIGR00954 450 NGIKFENIPLVTPN---GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA 513 (659)
T ss_pred CeEEEEeeEEECCC---CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC
Confidence 35899999999953 34699999999999999999999999999999999999999999998865
No 336
>PLN03073 ABC transporter F family; Provisional
Probab=99.33 E-value=2.9e-12 Score=129.03 Aligned_cols=64 Identities=19% Similarity=0.308 Sum_probs=56.6
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC---CCCCceEEEccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI---KPTSGNAYVMNH 278 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~---~pt~G~i~i~g~ 278 (288)
..+.++|+++.|++ +++++|+||.|.+||++||+|+|||||||++|+|+|.. .|++|+|.+.++
T Consensus 176 ~~I~i~nls~~y~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 176 KDIHMENFSISVGG----RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred eeEEEceEEEEeCC----CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence 36999999999953 46999999999999999999999999999999999965 689999975444
No 337
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.33 E-value=1.6e-12 Score=126.76 Aligned_cols=61 Identities=33% Similarity=0.455 Sum_probs=55.8
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|+++ .+++|+||.+++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 268 ~l~~~~l~~---------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~ 328 (510)
T PRK15439 268 VLTVEDLTG---------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEIN 328 (510)
T ss_pred eEEEeCCCC---------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECC
Confidence 577888863 1699999999999999999999999999999999999999999999998774
No 338
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.32 E-value=2.3e-12 Score=138.48 Aligned_cols=56 Identities=16% Similarity=0.292 Sum_probs=51.5
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
.++++|+++.|++. +++++++|+||+|++||++||+|++||||||++++|.|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~-~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR-PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred eEEEEEEEEECCCC-CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 59999999999742 235799999999999999999999999999999999999999
No 339
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.32 E-value=2.7e-12 Score=105.50 Aligned_cols=66 Identities=29% Similarity=0.450 Sum_probs=58.1
Q ss_pred eEEEEeeeEEeccc---cccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 212 VLVVKRLFKIYANS---KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 212 ~l~~~~l~k~y~~~---~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
.+.+++++|+|--. +-..++++|+||+|+.|||+.|=||+|+||||++|+|-|-+.|++|+|++.-
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H 72 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRH 72 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEe
Confidence 57899999998432 1234799999999999999999999999999999999999999999999854
No 340
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.32 E-value=3.5e-12 Score=114.00 Aligned_cols=71 Identities=32% Similarity=0.576 Sum_probs=61.1
Q ss_pred eEEEEeeeEEecccc--------------------ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc
Q psy7219 212 VLVVKRLFKIYANSK--------------------DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~--------------------~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G 271 (288)
.+.++|+.|.|+... +-...|+|+||+|++||+|.|.|-+|+||||+.+++.++.+||+|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 467788888875420 112469999999999999999999999999999999999999999
Q ss_pred eEEEccccccc
Q psy7219 272 NAYVMNHSIRD 282 (288)
Q Consensus 272 ~i~i~g~~i~~ 282 (288)
+|.++|.|+.+
T Consensus 84 ~ilv~g~di~~ 94 (386)
T COG4175 84 EILVDGKDIAK 94 (386)
T ss_pred eEEECCcchhc
Confidence 99999999854
No 341
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.31 E-value=2.8e-12 Score=124.37 Aligned_cols=65 Identities=34% Similarity=0.545 Sum_probs=59.8
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
..++.++|++|.|.+ +++.++++||.|.+||.+||+||||+||||++|+|+|...|.+|+|.++.
T Consensus 319 ~~vl~~~~~~~~y~~---~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~ 383 (530)
T COG0488 319 KLVLEFENVSKGYDG---GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE 383 (530)
T ss_pred CeeEEEeccccccCC---CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC
Confidence 357899999999964 36899999999999999999999999999999999999999999998764
No 342
>PRK13409 putative ATPase RIL; Provisional
Probab=99.31 E-value=3.8e-12 Score=125.80 Aligned_cols=61 Identities=30% Similarity=0.407 Sum_probs=55.8
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 276 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~ 276 (288)
..+.++++++.|++ . .++++|+.+++||++||+|+|||||||++|+|+|+.+|++|+|.++
T Consensus 339 ~~l~~~~ls~~~~~----~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~ 399 (590)
T PRK13409 339 TLVEYPDLTKKLGD----F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE 399 (590)
T ss_pred eEEEEcceEEEECC----E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe
Confidence 36899999999953 2 4899999999999999999999999999999999999999999875
No 343
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.30 E-value=1.9e-12 Score=107.22 Aligned_cols=70 Identities=26% Similarity=0.440 Sum_probs=64.6
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchh
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 284 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~ 284 (288)
..+.++|+.|.|+ ++.+++++|+.-++|+++.|+|.+|+||||.+++|.=+++|++|.|.++|..|+..+
T Consensus 5 ~~l~v~dlHK~~G----~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~ 74 (256)
T COG4598 5 NALEVEDLHKRYG----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKR 74 (256)
T ss_pred cceehhHHHhhcc----cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeee
Confidence 4688999999995 578999999999999999999999999999999999999999999999999886443
No 344
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.30 E-value=5.8e-12 Score=135.96 Aligned_cols=69 Identities=28% Similarity=0.427 Sum_probs=63.2
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..++++|++..|++ +.+++++|+||.|++||++||+|+|||||||++++|.|+++ ++|+|.++|.|+++
T Consensus 1216 g~I~f~nVs~~Y~~--~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~ 1284 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE--AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNS 1284 (1490)
T ss_pred CeEEEEEEEEEeCC--CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEccc
Confidence 36999999999974 34679999999999999999999999999999999999997 89999999999864
No 345
>KOG0055|consensus
Probab=99.26 E-value=7.6e-12 Score=128.63 Aligned_cols=70 Identities=23% Similarity=0.465 Sum_probs=65.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.++.+|++..|+. +++.++++|+|++|++||.++|+||+|+||||.+.+|...|+|++|.|.++|+|+++
T Consensus 987 ~I~~~~V~F~YPs-RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~ 1056 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPT-RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKD 1056 (1228)
T ss_pred EEEEeeeEeeCCC-CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCccccc
Confidence 4899999999985 456789999999999999999999999999999999999999999999999999864
No 346
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.24 E-value=9.3e-12 Score=104.73 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=43.1
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
..++++|+||++++||+++|+|||||||||++|++.+ ++|++.++|.
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~ 53 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISF 53 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCc
Confidence 3579999999999999999999999999999999963 6999999876
No 347
>KOG0054|consensus
Probab=99.22 E-value=2.2e-11 Score=127.63 Aligned_cols=71 Identities=24% Similarity=0.375 Sum_probs=65.5
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+..++++|++-.|++ +..+++||+||.|++||.+||+|.+||||||+.+.|-++.+|++|+|.|||.||.+
T Consensus 1136 ~G~I~f~~~~~RYrp--~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRP--NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISK 1206 (1381)
T ss_pred CCeEEEEEeEEEeCC--CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeeccc
Confidence 347999999999975 34579999999999999999999999999999999999999999999999999864
No 348
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.19 E-value=3.7e-11 Score=130.12 Aligned_cols=65 Identities=22% Similarity=0.424 Sum_probs=60.0
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
..+.++|+++.|++ +++++++|+||++++||+++|+|+|||||||++++|.|+++|++|++.++|
T Consensus 635 ~~i~~~~~~~~~~~--~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 699 (1522)
T TIGR00957 635 NSITVHNATFTWAR--DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG 699 (1522)
T ss_pred CcEEEEEeEEEcCC--CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC
Confidence 36999999999964 235799999999999999999999999999999999999999999999987
No 349
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.19 E-value=2.8e-11 Score=93.09 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=44.6
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
++|+++++|.+++||+++|+|++||||||+++++. +|++.++|.|+..
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~ 49 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVE 49 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHH
Confidence 46999999999999999999999999999999986 8999999998754
No 350
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.18 E-value=2.3e-11 Score=121.06 Aligned_cols=55 Identities=27% Similarity=0.310 Sum_probs=51.1
Q ss_pred ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC---CceEEEcccccc
Q psy7219 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR 281 (288)
Q Consensus 227 ~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt---~G~i~i~g~~i~ 281 (288)
+++++++|+|+.+++||+++|+|+|||||||++++|+|..+|+ +|+|.++|.++.
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~ 93 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID 93 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC
Confidence 3567999999999999999999999999999999999999885 799999999875
No 351
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.13 E-value=4.9e-11 Score=127.98 Aligned_cols=54 Identities=19% Similarity=0.128 Sum_probs=50.4
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC----CCCCceEEEcccccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI----KPTSGNAYVMNHSIR 281 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~----~pt~G~i~i~g~~i~ 281 (288)
++.+++|+|+.+++||+++|+|+|||||||++|+|+|.. +|++|+|.++|.++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~ 130 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPE 130 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehH
Confidence 467999999999999999999999999999999999986 579999999999874
No 352
>PLN03140 ABC transporter G family member; Provisional
Probab=99.12 E-value=5.9e-11 Score=127.42 Aligned_cols=55 Identities=24% Similarity=0.263 Sum_probs=51.6
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC---CceEEEccccccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRD 282 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt---~G~i~i~g~~i~~ 282 (288)
++.+++|+|+.+++||+++|+|||||||||++|+|+|..+|+ +|+|.++|+++.+
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~ 234 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNE 234 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechh
Confidence 357999999999999999999999999999999999999998 9999999998743
No 353
>KOG2355|consensus
Probab=99.06 E-value=4.2e-10 Score=95.30 Aligned_cols=69 Identities=30% Similarity=0.361 Sum_probs=63.0
Q ss_pred CCCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
.+..+++.++...|+. ..|.+-|+|++++.|...-++|.|||||||++|+|.|..-.-.|.|.+.|.+-
T Consensus 10 ~~~aievsgl~f~y~~---~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgrsa 78 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKV---SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSA 78 (291)
T ss_pred ccceEEEeccEEeccc---CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCc
Confidence 3458999999999975 34899999999999999999999999999999999999999999999999864
No 354
>KOG0065|consensus
Probab=99.04 E-value=5.7e-09 Score=108.06 Aligned_cols=71 Identities=25% Similarity=0.280 Sum_probs=57.9
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC--CCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p--t~G~i~i~g~~i~ 281 (288)
++...+|+.+.-+.+++++..++|++=-++||-..+|+|++|||||||+++|+|-..- .+|+|.++|++..
T Consensus 786 ~V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~ 858 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD 858 (1391)
T ss_pred ceEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc
Confidence 4555666665544334567899999999999999999999999999999999997533 3689999999976
No 355
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.04 E-value=3.1e-10 Score=92.72 Aligned_cols=64 Identities=25% Similarity=0.411 Sum_probs=59.1
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~ 279 (288)
.++++++.+.|+ ...++-|++|+-++||...||||+||||||+++.|.=++.|.+|+..|.|..
T Consensus 2 sirv~~in~~yg----~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~ 65 (242)
T COG4161 2 SIQLNGINCFYG----AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNH 65 (242)
T ss_pred ceEEcccccccc----cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccc
Confidence 378899999995 4679999999999999999999999999999999999999999999998754
No 356
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.03 E-value=2.1e-10 Score=108.78 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=47.2
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc-eEEEccccccc
Q psy7219 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHSIRD 282 (288)
Q Consensus 230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G-~i~i~g~~i~~ 282 (288)
.|++++|+++++||+++|+|+|||||||+++ .|..+|++| +|.++|.++..
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS 71 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence 5899999999999999999999999999999 788888888 79999999854
No 357
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.02 E-value=6.4e-10 Score=102.53 Aligned_cols=70 Identities=30% Similarity=0.379 Sum_probs=62.4
Q ss_pred eEEEEeeeEEecccc-------ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSK-------DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~-------~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+..++++..|+-++ +...||+++||++++||..||+|.+|+||||+-++|.++.+++ |+|..+|.++..
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 688999999997542 2246999999999999999999999999999999999999887 999999999863
No 358
>PLN03130 ABC transporter C family member; Provisional
Probab=99.01 E-value=5.3e-10 Score=121.53 Aligned_cols=65 Identities=20% Similarity=0.446 Sum_probs=58.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC-ceEEEcc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVMN 277 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~-G~i~i~g 277 (288)
.+.++|++..|+.. +++++++|+||.+++||.++|+|++||||||+++.|.|+++|++ |+|.+.|
T Consensus 614 ~I~~~nvsf~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~ 679 (1622)
T PLN03130 614 AISIKNGYFSWDSK-AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG 679 (1622)
T ss_pred ceEEEeeEEEccCC-CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC
Confidence 59999999999642 23579999999999999999999999999999999999999999 8998765
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.99 E-value=5e-10 Score=121.12 Aligned_cols=49 Identities=27% Similarity=0.609 Sum_probs=47.4
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
+++++|+||.|++||+++|+|||||||||++++|.|+.+|++|+|.++|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g 487 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG 487 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 4689999999999999999999999999999999999999999999987
No 360
>KOG0927|consensus
Probab=98.97 E-value=3.7e-10 Score=107.20 Aligned_cols=68 Identities=29% Similarity=0.493 Sum_probs=60.0
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
..++.++|+...|++ +....++++|+|..++.++++|||||||||++|+++|++.|+.|.+.-.-+..
T Consensus 387 ~pvi~~~nv~F~y~~---~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~ 454 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD---NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK 454 (614)
T ss_pred CCeEEEeccccCCCC---cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccccc
Confidence 457889999999975 22689999999999999999999999999999999999999999987765543
No 361
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=7.1e-10 Score=102.64 Aligned_cols=68 Identities=28% Similarity=0.460 Sum_probs=63.6
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+..++++..|.+ .++.++++||.+++|+.++++|++|+||||+.+.|-.++++++|.|.++|+|+++
T Consensus 262 ~v~F~~V~F~y~~---~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~ 329 (497)
T COG5265 262 AVAFINVSFAYDP---RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRD 329 (497)
T ss_pred eEEEEEEEeeccc---cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHH
Confidence 5788999999974 6789999999999999999999999999999999999999999999999999864
No 362
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.96 E-value=1.3e-09 Score=100.50 Aligned_cols=72 Identities=26% Similarity=0.401 Sum_probs=64.3
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-----CCceEEEcccccc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 281 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-----t~G~i~i~g~~i~ 281 (288)
...+.++|++..|....+...||+++||+|++||.++|+|.+|+|||-|..-+.|+.+. -+|+|..+|.++-
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence 35688999999997666677899999999999999999999999999999999999876 2689999999974
No 363
>PLN03232 ABC transporter C family member; Provisional
Probab=98.95 E-value=1.3e-09 Score=118.14 Aligned_cols=61 Identities=18% Similarity=0.413 Sum_probs=55.2
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 273 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i 273 (288)
.+.++|++..|+.. +++++++|+||+|++||.++|+|++||||||+++.|.|+++|++|.+
T Consensus 614 ~I~~~~vsF~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i 674 (1495)
T PLN03232 614 AISIKNGYFSWDSK-TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674 (1495)
T ss_pred cEEEEeeEEEcCCC-CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE
Confidence 58999999999642 23679999999999999999999999999999999999999999864
No 364
>PTZ00243 ABC transporter; Provisional
Probab=98.93 E-value=1.2e-09 Score=118.38 Aligned_cols=50 Identities=26% Similarity=0.428 Sum_probs=46.9
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
++++++|+||.|++||+++|+|+|||||||++++|.|+.+|++|++.+++
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~ 721 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAER 721 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 35699999999999999999999999999999999999999999998753
No 365
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.91 E-value=3e-09 Score=86.01 Aligned_cols=66 Identities=21% Similarity=0.415 Sum_probs=56.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC---CceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt---~G~i~i~g~~i~~ 282 (288)
+.++|++..- +++-.+-++|++|.+||++-|.||+|+||||++.-+.|...+. +|+++++++++..
T Consensus 3 l~l~nvsl~l----~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~ 71 (213)
T COG4136 3 LCLKNVSLRL----PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM 71 (213)
T ss_pred eeeeeeeecC----CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccc
Confidence 4566776544 3456889999999999999999999999999999999999885 7999999998753
No 366
>KOG0061|consensus
Probab=98.89 E-value=4.7e-09 Score=104.26 Aligned_cols=70 Identities=24% Similarity=0.330 Sum_probs=58.2
Q ss_pred eEEEEeeeEEecccc-ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC---CCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSK-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP---TSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~-~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p---t~G~i~i~g~~i~ 281 (288)
.+..++++..-+++. +.+..++|+|..+++||..|++||+||||||++++|+|..+. .+|+|.+||++..
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~ 98 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRD 98 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCc
Confidence 456667766654421 247899999999999999999999999999999999999975 7999999996543
No 367
>KOG0054|consensus
Probab=98.80 E-value=1e-08 Score=107.96 Aligned_cols=69 Identities=19% Similarity=0.403 Sum_probs=61.7
Q ss_pred CCCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
.+..+.+++.+....+ .++.+.++|+||.|++||.+|++|+-|||||++++.|.|+.++.+|++.++|.
T Consensus 515 ~~~~i~i~~~sfsW~~-~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs 583 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDS-ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS 583 (1381)
T ss_pred CCceEEEeeeeEecCC-CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe
Confidence 3457889999988865 23456999999999999999999999999999999999999999999999985
No 368
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.75 E-value=6.3e-09 Score=90.99 Aligned_cols=32 Identities=16% Similarity=0.392 Sum_probs=30.3
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHH
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTF 259 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~ 259 (288)
+..+++++||+|++||++||+|+|||||||++
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 46799999999999999999999999999995
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.70 E-value=6.8e-09 Score=88.93 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=40.4
Q ss_pred eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC---------ceEEEcccccc
Q psy7219 233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---------GNAYVMNHSIR 281 (288)
Q Consensus 233 ~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~---------G~i~i~g~~i~ 281 (288)
+++++++++| +.+|+|+|||||||++++|.|..+|.. |++.++|.++.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETR 70 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCC
Confidence 5689999999 999999999999999999999987663 35667776653
No 370
>KOG0060|consensus
Probab=98.70 E-value=4.1e-08 Score=94.21 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=57.3
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i 275 (288)
+..+++++++..-++ ++...++|+||.|++|+..-|.||||+|||+++|+|.|+.+.++|++.-
T Consensus 431 Dn~i~~e~v~l~tPt--~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k 494 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPT--NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTK 494 (659)
T ss_pred cceEEeeeeeecCCC--CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEe
Confidence 457999999988764 2567899999999999999999999999999999999999999998864
No 371
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.69 E-value=3.5e-08 Score=93.67 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=59.8
Q ss_pred CCCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc---ccccc
Q psy7219 209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM---NHSIR 281 (288)
Q Consensus 209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~---g~~i~ 281 (288)
...++..+++++.|.. +..+++.++ .+.+||+++|+|++|+||||++++|+|..+|+.|.+.+. |.++.
T Consensus 136 ~p~~~~r~~v~~~l~T---Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~ 207 (450)
T PRK06002 136 APPAMTRARVETGLRT---GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVR 207 (450)
T ss_pred CCCCeEeecceEEcCC---CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHH
Confidence 3457889999999964 467899886 999999999999999999999999999999999998885 56654
No 372
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.67 E-value=2.2e-08 Score=88.58 Aligned_cols=52 Identities=23% Similarity=0.403 Sum_probs=46.5
Q ss_pred eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccchh
Q psy7219 233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 284 (288)
Q Consensus 233 ~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~~~ 284 (288)
=+++|+.+..-+.+|-|++||||||++||++|+.+|+.|.|.+||..+.+.-
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~ 66 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAE 66 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeeccc
Confidence 3578888887899999999999999999999999999999999998765543
No 373
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.64 E-value=3.2e-08 Score=82.08 Aligned_cols=50 Identities=30% Similarity=0.448 Sum_probs=45.1
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
-+-.+|..+..||+.=++|||||||||++--++|+. |-+|+|.++|.++.
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~ 63 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLE 63 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchh
Confidence 345588999999999999999999999999999987 56999999999975
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.62 E-value=2.5e-08 Score=87.81 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=32.6
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
+.++|. |.|. ++.++++++ |++.+|+|||||||||++++|.
T Consensus 4 i~~~nf-ksy~----~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 4 VIIQGF-KSYK----DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred EEEeCc-cCcc----cCcccccCC-----CCcEEEECCCCCCHHHHHHHHH
Confidence 444443 5563 356888876 8999999999999999999998
No 375
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.59 E-value=5.2e-08 Score=90.37 Aligned_cols=48 Identities=31% Similarity=0.608 Sum_probs=43.5
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC--------CCCCCceEEEc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--------IKPTSGNAYVM 276 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~--------~~pt~G~i~i~ 276 (288)
..+++|+||.|++||..+++|++||||||+++|+.|. ++|++|.+.+-
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence 4689999999999999999999999999999999974 68999988763
No 376
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.59 E-value=2.5e-08 Score=84.57 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=41.2
Q ss_pred eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 233 ~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
+=+.+.+++|+.+++.|+|||||||+++.|+|+.+|+.|.+.+.+.
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDT 61 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence 3355678899999999999999999999999999999999998764
No 377
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.58 E-value=8.2e-08 Score=93.73 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=57.6
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 276 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~ 276 (288)
+..+.++|++..-+. +.+.+++++++|++||..-|.|+|||||||++|.|+|+.|--+|+|..-
T Consensus 390 ~~~i~~~nl~l~~p~---~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P 453 (604)
T COG4178 390 DHGITLENLSLRTPD---GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP 453 (604)
T ss_pred cceeEEeeeeEECCC---CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC
Confidence 457999999988754 4589999999999999999999999999999999999999999987664
No 378
>KOG0927|consensus
Probab=98.57 E-value=1.1e-07 Score=90.73 Aligned_cols=61 Identities=21% Similarity=0.446 Sum_probs=54.7
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEE
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~ 274 (288)
+.-+.++++++.|.+ +..++|.+|.+.+||..||+|+||+||||.++.++|-+.|..-++-
T Consensus 73 s~dvk~~sls~s~~g----~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d 133 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG----VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID 133 (614)
T ss_pred cccceeeeeeeccCC----ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc
Confidence 346899999999964 7899999999999999999999999999999999999999776543
No 379
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.55 E-value=4.7e-08 Score=84.71 Aligned_cols=41 Identities=22% Similarity=0.404 Sum_probs=34.0
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
+.++|.. .|. ++.+++++++ |++|++|||||||||++++|+
T Consensus 6 l~l~nfk-~~~----~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 6 LVLENFK-SYA----GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred EEEECcc-cCC----CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH
Confidence 5566654 664 3568998887 899999999999999999998
No 380
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.55 E-value=5.6e-08 Score=92.20 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=44.2
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc---eEEEcccccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG---NAYVMNHSIR 281 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G---~i~i~g~~i~ 281 (288)
+..|++++ +.+.+||++||+|+||+||||++++|+|..+++.+ .+-.+|.++.
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ 197 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVK 197 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHH
Confidence 45799999 99999999999999999999999999999998863 3333444443
No 381
>KOG0066|consensus
Probab=98.51 E-value=8.9e-08 Score=89.36 Aligned_cols=61 Identities=30% Similarity=0.556 Sum_probs=56.3
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEE
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~ 274 (288)
.++-+++++..|++ .++.+++++|+|.--..++|+||||.||||++++|+|.+.|+.|+.+
T Consensus 585 PvLGlH~VtFgy~g---qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~R 645 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPG---QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELR 645 (807)
T ss_pred CeeecccccccCCC---CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhh
Confidence 46789999999975 57899999999999999999999999999999999999999999764
No 382
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.51 E-value=4.2e-07 Score=85.99 Aligned_cols=67 Identities=30% Similarity=0.451 Sum_probs=60.9
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
.++++++|+..-+ .+..+++++||+|++||++||.|..|-|.+-++..|+|+.+|.+|+|.++|.++
T Consensus 256 ~vL~V~~L~v~~~---~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v 322 (501)
T COG3845 256 VVLEVEDLSVKDR---RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDV 322 (501)
T ss_pred eEEEEeeeEeecC---CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEec
Confidence 4788999987643 235799999999999999999999999999999999999999999999999997
No 383
>PRK08149 ATP synthase SpaL; Validated
Probab=98.50 E-value=1.3e-07 Score=89.50 Aligned_cols=54 Identities=20% Similarity=0.355 Sum_probs=49.9
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC---ceEEEccccccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---GNAYVMNHSIRD 282 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~---G~i~i~g~~i~~ 282 (288)
+..+++++ +.+.+||+.+|+|+||+||||++++|++...++. |.|-.+|.++.+
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e 194 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTE 194 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHH
Confidence 35799999 9999999999999999999999999999999987 889999988764
No 384
>KOG0064|consensus
Probab=98.46 E-value=3.1e-07 Score=87.46 Aligned_cols=61 Identities=21% Similarity=0.359 Sum_probs=52.6
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i 275 (288)
.+.++|+-..-+. ....|..++|+|++|--.-|+||||||||++|++|.|+.|...|..++
T Consensus 481 gI~lenIpvItP~---~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~ 541 (728)
T KOG0064|consen 481 GIILENIPVITPA---GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI 541 (728)
T ss_pred ceEEecCceeccC---cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec
Confidence 3667777666553 356899999999999999999999999999999999999998887765
No 385
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.44 E-value=2.7e-07 Score=79.08 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=37.4
Q ss_pred ceeeeEEEEeCCC-EEEEEcCCCCChHHHHHHHh--------CCCCCCCceEE
Q psy7219 231 AVNQISFGVGRGE-CFGLLGLNGAGKTTTFKMLT--------GAIKPTSGNAY 274 (288)
Q Consensus 231 av~~is~~v~~Ge-~~gllG~NGaGKTT~~~~l~--------G~~~pt~G~i~ 274 (288)
.+.++|+.+.+|+ +++|.||||+||||++|++. |...|....+.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~ 68 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSS 68 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccccc
Confidence 4557999999996 79999999999999999999 87777665443
No 386
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.44 E-value=2e-07 Score=80.28 Aligned_cols=37 Identities=35% Similarity=0.420 Sum_probs=32.0
Q ss_pred EEEeCCCEEEEEcCCCCChHHHHHHH----hCCCCCCCceEE
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTTFKML----TGAIKPTSGNAY 274 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~~~~l----~G~~~pt~G~i~ 274 (288)
+.+.+| +++|+|+|||||||+++.| .|..+|++|.+.
T Consensus 18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~ 58 (204)
T cd03240 18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGA 58 (204)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccccccc
Confidence 445566 9999999999999999999 599999888765
No 387
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.44 E-value=2.3e-07 Score=88.47 Aligned_cols=51 Identities=20% Similarity=0.388 Sum_probs=46.7
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~ 279 (288)
+..+++++ +.+.+||+.+|+|+||+||||++++|+|..+|+.|.+.+.|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Ger 195 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGER 195 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecC
Confidence 35699999 9999999999999999999999999999999999999985443
No 388
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.42 E-value=1.5e-07 Score=88.22 Aligned_cols=51 Identities=41% Similarity=0.682 Sum_probs=40.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEE-----EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFG-----VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~-----v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~ 272 (288)
.+...++.|.|+ +..+. ++.||++|++||||-||||..|+|+|.++|++|+
T Consensus 342 lv~y~~~~k~~g----------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~ 397 (591)
T COG1245 342 LVEYPDLKKTYG----------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS 397 (591)
T ss_pred eeecchheeecC----------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence 344556666663 34444 5678999999999999999999999999999996
No 389
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.42 E-value=1.6e-07 Score=80.58 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=31.2
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+.+.+|++++. ||+++|+||||+||||++|+|.|..
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence 45778887776 6999999999999999999998755
No 390
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.41 E-value=3.3e-07 Score=86.94 Aligned_cols=64 Identities=20% Similarity=0.328 Sum_probs=55.0
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
.++..+.+++.+.. +..+++++ +.+.+||.++|+|+||+||||++++|+|..+++.|.+...|.
T Consensus 128 ~~~~r~~v~~~l~t---Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGe 191 (433)
T PRK07594 128 PAMVRQPITQPLMT---GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE 191 (433)
T ss_pred CceeccCHhheeCC---Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECC
Confidence 45677777777753 46799999 999999999999999999999999999999999987776554
No 391
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.40 E-value=4.1e-07 Score=83.46 Aligned_cols=50 Identities=20% Similarity=0.416 Sum_probs=45.5
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
+..+++++ +.+.+||+.+|+|+||+||||++++|+|...|+.|.+..-|.
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGe 105 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGE 105 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEec
Confidence 45699999 999999999999999999999999999999999988777553
No 392
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.39 E-value=3.6e-07 Score=81.97 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=37.3
Q ss_pred CEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..++++|+|||||||++++|+|..+|++|++.++|.++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEee
Confidence 678999999999999999999999999999999999985
No 393
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.36 E-value=3.6e-07 Score=79.13 Aligned_cols=55 Identities=24% Similarity=0.204 Sum_probs=39.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEe-CCCEEEEEcCCCCChHHHHHHHhC-CCCCCCceEE
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVG-RGECFGLLGLNGAGKTTTFKMLTG-AIKPTSGNAY 274 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~-~Ge~~gllG~NGaGKTT~~~~l~G-~~~pt~G~i~ 274 (288)
.++++|.. .|.. -++++|... +||+++|+|+|||||||++++|++ ++.+..+...
T Consensus 5 ~i~l~nf~-~y~~-------~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~ 61 (213)
T cd03279 5 KLELKNFG-PFRE-------EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGR 61 (213)
T ss_pred EEEEECCc-CcCC-------ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCcccccc
Confidence 36677776 5532 156777654 599999999999999999999995 4444444443
No 394
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.29 E-value=1e-06 Score=83.62 Aligned_cols=65 Identities=14% Similarity=0.336 Sum_probs=54.8
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~ 279 (288)
.++..+.+.+.|.. +..++|++ +.+.+||..+|+|+||+||||++++|+|..+|+.|.+...|..
T Consensus 129 ~~~~r~~i~~~l~T---GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer 193 (432)
T PRK06793 129 HAFEREEITDVFET---GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER 193 (432)
T ss_pred CchheechhhccCC---CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC
Confidence 35666777777753 35688885 9999999999999999999999999999999999998876654
No 395
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.26 E-value=8e-07 Score=84.56 Aligned_cols=48 Identities=19% Similarity=0.372 Sum_probs=44.7
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 276 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~ 276 (288)
+..+++++ +.+.+||+.+|+|+||+||||++++|+|..+|+.|.+...
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~i 179 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALI 179 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEE
Confidence 35699999 9999999999999999999999999999999999988773
No 396
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.26 E-value=1.2e-06 Score=83.41 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=46.4
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
+..+++++ +.+.+||+.+|+|+||+||||++++++|..+++.|.+...|.
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGe 199 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGE 199 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEcc
Confidence 45699999 999999999999999999999999999999999998888774
No 397
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.26 E-value=7.2e-07 Score=84.94 Aligned_cols=53 Identities=25% Similarity=0.402 Sum_probs=44.1
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC---ceEEEcccccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---GNAYVMNHSIR 281 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~---G~i~i~g~~i~ 281 (288)
+..|+|++ +.+.+||+.+|+|+||+||||++++|+|..+|+- |.+-..|.+++
T Consensus 155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev~ 210 (451)
T PRK05688 155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVK 210 (451)
T ss_pred ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhHH
Confidence 46799999 9999999999999999999999999999988763 44444554443
No 398
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.25 E-value=9.4e-07 Score=76.13 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=34.0
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
++.+.+|+++++++||.++|.||||+||||++|+++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHH
Confidence 356999999999999999999999999999999998
No 399
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.25 E-value=9.1e-07 Score=84.11 Aligned_cols=54 Identities=26% Similarity=0.425 Sum_probs=48.2
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC---ceEEEccccccch
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---GNAYVMNHSIRDS 283 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~---G~i~i~g~~i~~~ 283 (288)
..|+|.+ +.+.+||+++|+|+||+||||++++|+|..+|+. |.|..+|.++.+-
T Consensus 163 iraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~ 219 (455)
T PRK07960 163 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDF 219 (455)
T ss_pred ceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHH
Confidence 4577666 9999999999999999999999999999999986 8999999988653
No 400
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.24 E-value=1.1e-06 Score=85.05 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=54.9
Q ss_pred EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
..++++.|+ .+.+++++++.+..|+.++++|+||+||||+++.|.|+.+|.+|+..+++..|
T Consensus 187 ~~d~~~v~G----q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIG----QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEEC----cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 347777774 35699999999999999999999999999999999999999999998887665
No 401
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.23 E-value=1.1e-06 Score=83.21 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=45.5
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~ 279 (288)
+..+++ .++.+.+||+++|+|+||+||||++++|+|..+|+.|.+.+.|..
T Consensus 127 Gi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer 177 (418)
T TIGR03498 127 GVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGER 177 (418)
T ss_pred ccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeee
Confidence 345675 699999999999999999999999999999999999988877654
No 402
>KOG0062|consensus
Probab=98.23 E-value=1.1e-06 Score=83.52 Aligned_cols=49 Identities=27% Similarity=0.508 Sum_probs=44.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
-+...+....|+ ++..+++-++.+.+|...||+|+||+||||++|+|+.
T Consensus 80 Di~~~~fdLa~G----~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 80 DIHIDNFDLAYG----GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ceeeeeeeeeec----chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 477778888885 5789999999999999999999999999999999987
No 403
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.22 E-value=9.2e-07 Score=77.13 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=42.7
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC-CCCCCCceEEEc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG-AIKPTSGNAYVM 276 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G-~~~pt~G~i~i~ 276 (288)
+.+.+|+++++.+|++.+|.|+||+||||++|++++ ...+..|....+
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a 66 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA 66 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence 458899999999999999999999999999999999 778888865444
No 404
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.22 E-value=1.8e-06 Score=81.76 Aligned_cols=52 Identities=19% Similarity=0.364 Sum_probs=47.3
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
+..+++++ +.+.+||+.+|+|+||+||||++++|++..+++.|.+...|..-
T Consensus 124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~ 175 (413)
T TIGR03497 124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG 175 (413)
T ss_pred cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence 35699999 99999999999999999999999999999999999888777554
No 405
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.19 E-value=4.8e-07 Score=86.99 Aligned_cols=43 Identities=33% Similarity=0.464 Sum_probs=37.5
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce
Q psy7219 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272 (288)
Q Consensus 230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~ 272 (288)
.++++.+..+.+|++++++||||+|||||+..|++.+....|.
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~ 286 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA 286 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence 3566677778899999999999999999999999998877764
No 406
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.18 E-value=1.7e-06 Score=82.68 Aligned_cols=50 Identities=18% Similarity=0.403 Sum_probs=44.6
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
+..+++++ +.+.+||+.+|+|+||+||||++++|+|..+++.|.+...|.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~ 199 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGE 199 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEee
Confidence 35699999 999999999999999999999999999999999887666443
No 407
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.17 E-value=2.6e-06 Score=73.05 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=26.6
Q ss_pred eeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 234 QISFGVGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 234 ~is~~v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
-.++.+.+||+++|.|+||+||||++|++.
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHH
Confidence 345566689999999999999999999999
No 408
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.16 E-value=2.7e-06 Score=80.57 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=50.5
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
+..-+.+++.|.. +..+++.+ +.+.+||+++|+|+||+||||++++|++..+|+.|.+...|.
T Consensus 111 ~~~R~~~~~~~~t---Gi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGe 173 (411)
T TIGR03496 111 PLKRAPIDEPLDV---GVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGE 173 (411)
T ss_pred HHhccCcceEeee---eEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEec
Confidence 3444455555642 45689999 999999999999999999999999999999998777655444
No 409
>PRK05922 type III secretion system ATPase; Validated
Probab=98.16 E-value=2.9e-06 Score=80.52 Aligned_cols=49 Identities=18% Similarity=0.398 Sum_probs=43.6
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
..++|.+ +.+.+||.++|+|+||+||||++++|+|..+++.|.+..-|.
T Consensus 145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGe 193 (434)
T PRK05922 145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGE 193 (434)
T ss_pred ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCC
Confidence 4578776 999999999999999999999999999999999998865444
No 410
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.15 E-value=1.4e-06 Score=76.30 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCCCCce----EEEcccc
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN----AYVMNHS 279 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~----i~i~g~~ 279 (288)
+..++||.|+|||||||+.+.|++..++++|. +..++..
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 45699999999999999999999999999998 4445443
No 411
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.14 E-value=4.8e-06 Score=79.94 Aligned_cols=62 Identities=37% Similarity=0.519 Sum_probs=54.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+++++++.. ..++|+||++++||++||-|-=|||+|-+++.|-|..++.+|+|.++|.++.
T Consensus 263 ~l~v~~l~~~--------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~ 324 (500)
T COG1129 263 VLEVRNLSGG--------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVR 324 (500)
T ss_pred EEEEecCCCC--------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEcc
Confidence 4667776431 2689999999999999999999999999999999999999999999999764
No 412
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.12 E-value=3.9e-06 Score=58.02 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=28.8
Q ss_pred eeeEEEEeC-CCEEEEEcCCCCChHHHHHHHhCCCCCCC
Q psy7219 233 NQISFGVGR-GECFGLLGLNGAGKTTTFKMLTGAIKPTS 270 (288)
Q Consensus 233 ~~is~~v~~-Ge~~gllG~NGaGKTT~~~~l~G~~~pt~ 270 (288)
++-.+.+.+ |+.+.|.|+|||||||++..+.=..-+..
T Consensus 13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 345666664 57999999999999999988875554433
No 413
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.09 E-value=2.5e-06 Score=81.25 Aligned_cols=52 Identities=17% Similarity=0.381 Sum_probs=42.9
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC-ceEEE---cccccc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYV---MNHSIR 281 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~-G~i~i---~g~~i~ 281 (288)
..|+|++ +.+.+||+++|+|+||+||||++++|+|..++++ |.+.. .|.++.
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~ 207 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVR 207 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHH
Confidence 4689998 9999999999999999999999999999885544 55555 445553
No 414
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.09 E-value=1.9e-06 Score=77.97 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=31.4
Q ss_pred CEEEEEcCCCCChHHHHHHHhCCCC--CCCceEEEccc
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLTGAIK--PTSGNAYVMNH 278 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~G~~~--pt~G~i~i~g~ 278 (288)
.++||.|+|||||||+.++|.++.. |++|++.+-+.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~ 100 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITT 100 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEec
Confidence 4899999999999999999999998 78898776433
No 415
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.09 E-value=4.9e-06 Score=71.12 Aligned_cols=56 Identities=30% Similarity=0.443 Sum_probs=48.0
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
+-++|++-.+..+.+...||+++|++..+||+-||+|.+|+|||-..|.++|..+-
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kd 59 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD 59 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhccccc
Confidence 44667777776555667799999999999999999999999999999999998763
No 416
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.06 E-value=3.1e-06 Score=80.45 Aligned_cols=52 Identities=17% Similarity=0.343 Sum_probs=46.8
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..+++++ +.+.+||+.+|+|+||+||||++++|++...++.+.+...|..-+
T Consensus 145 i~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergr 196 (434)
T PRK08472 145 VKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGR 196 (434)
T ss_pred hHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccch
Confidence 4599999 999999999999999999999999999999888888887776543
No 417
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=2.1e-06 Score=86.43 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=40.5
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc--eEEEcccc
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHS 279 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G--~i~i~g~~ 279 (288)
++++.++.+++|++++++||||+|||||+..|++.+....| +|.+-..|
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D 224 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD 224 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence 56667777888999999999999999999999999977776 56554444
No 418
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.05 E-value=2.4e-06 Score=78.44 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=38.5
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
++|++++++||||+|||||+..|++...+..|+|.+.+.|..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 578999999999999999999999999999899999887763
No 419
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.01 E-value=3.7e-06 Score=76.95 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=39.2
Q ss_pred eEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc
Q psy7219 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 276 (288)
Q Consensus 235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~ 276 (288)
+++.+++|+.+++.|++||||||+++.|+++.++..|.+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence 567889999999999999999999999999999999988885
No 420
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.99 E-value=3.8e-06 Score=74.50 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCCCCC-CceEEEccc
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNH 278 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~~pt-~G~i~i~g~ 278 (288)
..+.+|+|+|||||||++++|.+...++ .|++...|.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~ 62 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNL 62 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCH
Confidence 6699999999999999999999999887 457777665
No 421
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.99 E-value=7.2e-06 Score=77.83 Aligned_cols=40 Identities=30% Similarity=0.554 Sum_probs=36.6
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 269 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt 269 (288)
..+++.+ +.+.+||+.+|+|+||+||||++++|++...++
T Consensus 150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 4578888 999999999999999999999999999988774
No 422
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.99 E-value=4.9e-06 Score=75.41 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=39.4
Q ss_pred eeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE---ccccccch
Q psy7219 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIRDS 283 (288)
Q Consensus 232 v~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i---~g~~i~~~ 283 (288)
++++...+. ++.++++|+||+||||+++.|.|...++.|++.. .|...+++
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~ 205 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTH 205 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccce
Confidence 334444444 5899999999999999999999999999999876 44444433
No 423
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.98 E-value=1e-05 Score=72.32 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=31.5
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHH
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 262 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l 262 (288)
...++|++++++.|+.+++.|++||||||+++.+
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 4589999999999999999999999999999855
No 424
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.98 E-value=5.5e-06 Score=78.00 Aligned_cols=34 Identities=44% Similarity=0.820 Sum_probs=31.7
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~ 272 (288)
.++|+++||+|+||-||||.+|+|+|+..|.=|+
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~ 130 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGR 130 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCC
Confidence 4589999999999999999999999999998875
No 425
>PLN02796 D-glycerate 3-kinase
Probab=97.98 E-value=2e-06 Score=79.14 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=40.8
Q ss_pred ceeeeEEEE---eCCCE-----EEEEcCCCCChHHHHHHHhCCCCCC---CceEEEcccccc
Q psy7219 231 AVNQISFGV---GRGEC-----FGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR 281 (288)
Q Consensus 231 av~~is~~v---~~Ge~-----~gllG~NGaGKTT~~~~l~G~~~pt---~G~i~i~g~~i~ 281 (288)
++++++..+ ++|+. +||.|++||||||+.+.|.+..++. .|.+.+++..+.
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt 142 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT 142 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence 455555554 45555 9999999999999999999999875 588899998764
No 426
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.96 E-value=5.3e-06 Score=69.83 Aligned_cols=48 Identities=29% Similarity=0.406 Sum_probs=39.1
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC--------CCCCCCceEEEcccc
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--------AIKPTSGNAYVMNHS 279 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G--------~~~pt~G~i~i~g~~ 279 (288)
+++++++..+++++ +++|++|+||||+++.+++ ...|+.+++.+++.+
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~ 64 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIK 64 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEE
Confidence 67888888777777 9999999999999999998 345566777777654
No 427
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.93 E-value=7.2e-06 Score=71.26 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=31.7
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
+.+.+|++++.++ ++++|.||||+||||++|++.+
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence 4588999999987 9999999999999999999863
No 428
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.92 E-value=2.4e-05 Score=73.47 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=48.7
Q ss_pred eEEEEeeeEEecccccccccee-----------eeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVN-----------QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 269 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~-----------~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt 269 (288)
.+..++|+..|++ ++.+++ |+.+.|.+||..+|+|+.|+||||++++|...+...
T Consensus 130 ri~Fe~LTf~YP~---er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 130 RVLFENLTPLYPN---ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CeEEEEeeecCCC---ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 5889999999975 346786 999999999999999999999999999999987654
No 429
>PRK01889 GTPase RsgA; Reviewed
Probab=97.90 E-value=1.1e-05 Score=75.39 Aligned_cols=48 Identities=23% Similarity=0.352 Sum_probs=42.3
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
-++.+.-.+++||+++++|+||+||||+++.|+|..+++.|++..++.
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~ 231 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDS 231 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCC
Confidence 355555567899999999999999999999999999999999998764
No 430
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.90 E-value=1.5e-05 Score=85.93 Aligned_cols=48 Identities=27% Similarity=0.238 Sum_probs=41.6
Q ss_pred eeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 232 v~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
+.+-.|.+.+| +++|+|+|||||||++++|.+...|..|.+.+++.+.
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~~ 65 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCccc
Confidence 34457777775 9999999999999999999999999999999887653
No 431
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.88 E-value=1.7e-05 Score=65.53 Aligned_cols=37 Identities=38% Similarity=0.535 Sum_probs=31.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCC----CCCCCc----eEEEccccc
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA----IKPTSG----NAYVMNHSI 280 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~----~~pt~G----~i~i~g~~i 280 (288)
.++++|+||+||||+++.++|. ..||.| .+..+|.++
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~ 60 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKL 60 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEE
Confidence 5889999999999999999997 668889 777776554
No 432
>PRK06820 type III secretion system ATPase; Validated
Probab=97.87 E-value=2e-05 Score=75.04 Aligned_cols=45 Identities=24% Similarity=0.385 Sum_probs=41.1
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 273 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i 273 (288)
+..++|++ +.+.+||..+|+|+||+||||++++|++...|+.+.+
T Consensus 150 Gi~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~ 194 (440)
T PRK06820 150 GIRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVL 194 (440)
T ss_pred CCceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEE
Confidence 46799999 9999999999999999999999999999998887543
No 433
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.87 E-value=1.8e-05 Score=75.30 Aligned_cols=42 Identities=19% Similarity=0.401 Sum_probs=38.9
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 270 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~ 270 (288)
+..+++++ +.+.+||+.+|+|+||+||||++++|++...++-
T Consensus 149 Gi~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv 190 (439)
T PRK06936 149 GVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV 190 (439)
T ss_pred Ccceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence 35699999 9999999999999999999999999999998864
No 434
>PRK00098 GTPase RsgA; Reviewed
Probab=97.84 E-value=1.8e-05 Score=72.04 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i 275 (288)
+|++++++|+||+||||+++.|.|...+..|++..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 68999999999999999999999999999999886
No 435
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.84 E-value=1.1e-05 Score=78.28 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=49.4
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
...+++++++.+..|+.+.++|+||+||||+.+.+.|+.+|.+|++.+++..+.
T Consensus 197 q~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~ 250 (499)
T TIGR00368 197 QQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIW 250 (499)
T ss_pred cHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccc
Confidence 456899999999999999999999999999999999999999999988876653
No 436
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=1e-05 Score=76.80 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=31.7
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCC----CC-CCceEEEccccc
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAI----KP-TSGNAYVMNHSI 280 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~----~p-t~G~i~i~g~~i 280 (288)
+.+|++++++|+||+|||||++.|+|.. .+ ..|-+..+++.+
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri 234 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI 234 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch
Confidence 4689999999999999999999999863 22 334555555443
No 437
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.83 E-value=2.1e-05 Score=68.62 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=32.4
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
+.+.+|++++.+++++.+|.||||+||||+++++.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 46899999999999999999999999999999963
No 438
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.83 E-value=1.9e-05 Score=81.70 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=29.3
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHH
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFK 260 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~ 260 (288)
.++|++++|++||++|+.|+||||||||++
T Consensus 622 ~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 622 NLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred CcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 699999999999999999999999999997
No 439
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.81 E-value=1.3e-05 Score=70.94 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 276 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~ 276 (288)
...+|+|+|||||||++++|.+...+.+|+....
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~ 56 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSK 56 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCccccccc
Confidence 3899999999999999999999988877776544
No 440
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.80 E-value=3e-05 Score=84.39 Aligned_cols=39 Identities=13% Similarity=0.335 Sum_probs=34.9
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCCChHHHHH---------HHhCCCCC
Q psy7219 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFK---------MLTGAIKP 268 (288)
Q Consensus 230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~---------~l~G~~~p 268 (288)
..++++|+.|++||++||.|+|||||||+++ .|.|...+
T Consensus 609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~ 656 (1809)
T PRK00635 609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCS 656 (1809)
T ss_pred CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3799999999999999999999999999999 77776544
No 441
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.77 E-value=2.6e-05 Score=84.22 Aligned_cols=41 Identities=39% Similarity=0.592 Sum_probs=35.2
Q ss_pred CCEEEEEcCCCCChHHHHHHH----hCCCCCC-CceEEEccccccc
Q psy7219 242 GECFGLLGLNGAGKTTTFKML----TGAIKPT-SGNAYVMNHSIRD 282 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l----~G~~~pt-~G~i~i~g~~i~~ 282 (288)
..+++|+|||||||||++.+| +|..+|. +|.+++.+.++..
T Consensus 28 ~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~ 73 (1311)
T TIGR00606 28 SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQ 73 (1311)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCc
Confidence 349999999999999999999 6999996 7998888766543
No 442
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.75 E-value=2.2e-05 Score=67.16 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=36.3
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCCCCC-CceEEEccccccc
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIRD 282 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-~G~i~i~g~~i~~ 282 (288)
++|+++++.|.|||||||+.+.|.+...+. .|.+.++|.++..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~ 65 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH 65 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh
Confidence 468899999999999999999999977654 4689999877654
No 443
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.72 E-value=3.9e-05 Score=79.64 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=30.7
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHH
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKML 262 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l 262 (288)
.++|+|++|++||++|+.|+|||||||+++.+
T Consensus 624 ~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~ 655 (943)
T PRK00349 624 NLKNVDVEIPLGKFTCVTGVSGSGKSTLINET 655 (943)
T ss_pred CcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence 69999999999999999999999999999876
No 444
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.72 E-value=3.3e-05 Score=84.11 Aligned_cols=54 Identities=15% Similarity=0.149 Sum_probs=41.4
Q ss_pred EEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc
Q psy7219 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 276 (288)
Q Consensus 215 ~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~ 276 (288)
..++...+. ..+.++|+++++++||++||.|+|||||||++..+ +++ .|++.+.
T Consensus 938 ~~~i~i~~~----~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~~~~ 991 (1809)
T PRK00635 938 PADITIKNA----YQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNIAYA 991 (1809)
T ss_pred cceEEEecc----ccccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccEeee
Confidence 445555442 23479999999999999999999999999977665 333 7888754
No 445
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.67 E-value=4.8e-05 Score=66.19 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=34.1
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
+.+-+|++++.++|++++|.|+||+||||+++++++.
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 4688999999999999999999999999999998854
No 446
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.58 E-value=7.5e-05 Score=63.98 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=27.8
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
.+++++++..+| +.+++|+||+||||++..|..
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~ 43 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTI 43 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHH
Confidence 456677887776 779999999999999999874
No 447
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.58 E-value=5.3e-05 Score=66.43 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=35.7
Q ss_pred EEeCCCEEEEEcCCCCChHHH-HHHHhCCCCCCCceEEEccc
Q psy7219 238 GVGRGECFGLLGLNGAGKTTT-FKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~-~~~l~G~~~pt~G~i~i~g~ 278 (288)
++++|+++.+.|+||+||||+ .+++.+..++....+++...
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 489999999999999999999 79999987777777888754
No 448
>KOG0065|consensus
Probab=97.56 E-value=0.0001 Score=77.42 Aligned_cols=58 Identities=29% Similarity=0.367 Sum_probs=51.4
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC---CceEEEccccccchhh
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRDSMD 285 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt---~G~i~i~g~~i~~~~~ 285 (288)
....++|+|.-+++||..-+||+.||||||+++.|+|...-. .|+|..+|++.++.+.
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~ 187 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP 187 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc
Confidence 357999999999999999999999999999999999987654 5799999999876554
No 449
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=4.3e-05 Score=71.49 Aligned_cols=43 Identities=33% Similarity=0.421 Sum_probs=35.9
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G 271 (288)
.+++++.+..+.+|++++++||||+|||||+..|++......|
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G 166 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFG 166 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 3467778888999999999999999999999999987543333
No 450
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.55 E-value=7.7e-05 Score=67.36 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=35.4
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~ 279 (288)
=+.+.+++|+|++||||||+++.+.+..+...+.+.+.|..
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~ 141 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ 141 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCc
Confidence 34688999999999999999999999988888888887653
No 451
>KOG0062|consensus
Probab=97.49 E-value=0.00011 Score=70.32 Aligned_cols=67 Identities=24% Similarity=0.263 Sum_probs=58.6
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
...+++.++.+.|..+ .-....++++++.--+..+.+|+||+||||++|++.|+..|++|.+.+.+.
T Consensus 360 ~p~l~i~~V~f~y~p~--~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r 426 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPS--EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR 426 (582)
T ss_pred CCeeEEEeeeccCCCc--chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeeccc
Confidence 3468899999888652 126899999999999999999999999999999999999999999887654
No 452
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.48 E-value=0.00015 Score=64.44 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=33.3
Q ss_pred eEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce
Q psy7219 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272 (288)
Q Consensus 235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~ 272 (288)
.=+.+.+||..+|+|++|+||||+++++.+......++
T Consensus 9 ~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fd 46 (249)
T cd01128 9 LFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPE 46 (249)
T ss_pred eecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCC
Confidence 33678899999999999999999999999999887543
No 453
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=97.48 E-value=0.00013 Score=69.48 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=36.1
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 270 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~ 270 (288)
.+=|.-+.+.+||+++|+|+||+||||++++|++..+|+.
T Consensus 147 r~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d~ 186 (442)
T PRK08927 147 RALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADV 186 (442)
T ss_pred EEEeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCE
Confidence 4456779999999999999999999999999999998864
No 454
>PLN02165 adenylate isopentenyltransferase
Probab=97.46 E-value=0.00011 Score=67.53 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=35.7
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCC---CCCceE-EEccccccch
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNA-YVMNHSIRDS 283 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~---pt~G~i-~i~g~~i~~~ 283 (288)
+|++++|+|||||||||+...|++... .+.+++ .+.|.+|.+.
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTa 88 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTN 88 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccC
Confidence 688999999999999999999999876 567777 4478887543
No 455
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.45 E-value=4.9e-05 Score=77.60 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=32.4
Q ss_pred eeEEEEeCC-CEEEEEcCCCCChHHHHHHHhCC-CCCCCc
Q psy7219 234 QISFGVGRG-ECFGLLGLNGAGKTTTFKMLTGA-IKPTSG 271 (288)
Q Consensus 234 ~is~~v~~G-e~~gllG~NGaGKTT~~~~l~G~-~~pt~G 271 (288)
.+++.+.++ +.++|.||||+||||++|+++|. +.+..|
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G 352 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG 352 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC
Confidence 378888877 99999999999999999999988 455555
No 456
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.45 E-value=0.0001 Score=69.45 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=34.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCC---CceEEEcccccc
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR 281 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~pt---~G~i~i~g~~i~ 281 (288)
++||.|++||||||+.+.|.++.+++ .|.+.++++.+.
T Consensus 214 IIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt 254 (460)
T PLN03046 214 VIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLT 254 (460)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCC
Confidence 78999999999999999999999877 788999998763
No 457
>KOG0063|consensus
Probab=97.45 E-value=0.00024 Score=66.76 Aligned_cols=44 Identities=41% Similarity=0.670 Sum_probs=39.5
Q ss_pred cccceeeeEEEEeCCC-----EEEEEcCCCCChHHHHHHHhCCCCCCCc
Q psy7219 228 TKPAVNQISFGVGRGE-----CFGLLGLNGAGKTTTFKMLTGAIKPTSG 271 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge-----~~gllG~NGaGKTT~~~~l~G~~~pt~G 271 (288)
.+.-+-+..+.|+.|| ++..+|.||.||||+++|++|..+|+.|
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~ 396 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG 396 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc
Confidence 4557889999999885 7889999999999999999999999998
No 458
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.43 E-value=0.00013 Score=68.03 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=31.3
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCCCCC--C-ceEEEcccc
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAIKPT--S-GNAYVMNHS 279 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt--~-G~i~i~g~~ 279 (288)
++|..+.+.||||||||||++.|.+...++ + +.+...+.+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edp 174 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAP 174 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence 489999999999999999999999998543 3 355444333
No 459
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.42 E-value=0.00015 Score=59.93 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEE
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~ 274 (288)
++++..++|++|+||||+++.|.+......|++.
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is 67 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS 67 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence 4579999999999999999999999776666654
No 460
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.40 E-value=7.3e-05 Score=68.19 Aligned_cols=46 Identities=24% Similarity=0.313 Sum_probs=38.7
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275 (288)
Q Consensus 230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i 275 (288)
.++++++....+++.+++.|++|+||||+.+.+.+.......++.+
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~ 67 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAV 67 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 4788999999999999999999999999999999876554444433
No 461
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.39 E-value=0.00015 Score=71.14 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=32.6
Q ss_pred CEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~ 279 (288)
=++||.|+|||||||+.+.|.+.. |..|.+.++|+.
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~ 101 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYN 101 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEccee
Confidence 389999999999999999999997 578999999875
No 462
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.38 E-value=0.00018 Score=60.59 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=25.1
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
..+++.+...+| +..|.|+||+||||++..|.
T Consensus 9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~ 40 (202)
T PF13476_consen 9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIR 40 (202)
T ss_dssp TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHH
T ss_pred CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHH
Confidence 446677777776 99999999999999998765
No 463
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.34 E-value=0.00014 Score=63.10 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=25.1
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
+=+|++++=..+....|.||||+||||++|.+.
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHH
Confidence 445555542223789999999999999999987
No 464
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.33 E-value=0.00011 Score=62.01 Aligned_cols=45 Identities=24% Similarity=0.331 Sum_probs=36.6
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC-ceEEEccccccc
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVMNHSIRD 282 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~-G~i~i~g~~i~~ 282 (288)
..++|+++++.|++|+||||+.+.|.+..+... +.+.++|.++++
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~ 59 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRH 59 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHh
Confidence 446899999999999999999999999886433 257888877654
No 465
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.22 E-value=0.00024 Score=63.78 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=34.0
Q ss_pred eeeeEEEEe-------CCCEEEEEcCCCCChHHHHHHHhCCCCC---CCceEEEccc
Q psy7219 232 VNQISFGVG-------RGECFGLLGLNGAGKTTTFKMLTGAIKP---TSGNAYVMNH 278 (288)
Q Consensus 232 v~~is~~v~-------~Ge~~gllG~NGaGKTT~~~~l~G~~~p---t~G~i~i~g~ 278 (288)
++++++.+. +|+.++++|+||+||||++++|++.... ..|-+..+++
T Consensus 58 ~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ 114 (270)
T PRK06731 58 LEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 114 (270)
T ss_pred hcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 445555544 6699999999999999999999988643 3344444444
No 466
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.20 E-value=0.00039 Score=67.66 Aligned_cols=47 Identities=21% Similarity=0.361 Sum_probs=40.8
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh---CCCCCCCceEEE
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAYV 275 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~---G~~~pt~G~i~i 275 (288)
+...+||+.+.. +|..++|.|++||||||+.+.|+ |..-.++|.+|=
T Consensus 271 ~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR 320 (512)
T PRK13477 271 STRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYR 320 (512)
T ss_pred CeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceeh
Confidence 356899999987 88999999999999999999999 777777787653
No 467
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.20 E-value=0.0004 Score=64.46 Aligned_cols=41 Identities=32% Similarity=0.251 Sum_probs=36.1
Q ss_pred EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
..++.+..+.+.|++||||||+++.|.+..+++.+.+.+..
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd 197 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED 197 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence 34778889999999999999999999999999888877654
No 468
>PRK15494 era GTPase Era; Provisional
Probab=97.14 E-value=0.00033 Score=65.02 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=42.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCC-------EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGE-------CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge-------~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
...++++..|+. ...+++++++.++.|| .++++|..|+||||+++.|.|..
T Consensus 19 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 19 TEALAAAVREDA---STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred cccccccccCCC---CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 444555566753 3569999999999999 99999999999999999999874
No 469
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=97.12 E-value=0.00011 Score=66.32 Aligned_cols=136 Identities=21% Similarity=0.294 Sum_probs=0.0
Q ss_pred EeeehHHHHHHHHHHHHHHHHhCCccccCCCCHHHHHHHHHHHHhhHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHH
Q psy7219 2 YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPSTAFVVLGCFNLFVGLITT 81 (288)
Q Consensus 2 f~~D~~~~~i~~~~~i~i~~~f~~~~f~~~~~~~~~~lll~l~g~s~i~~~Y~~S~~F~~~~~A~~~~~~~~~~~g~~~~ 81 (288)
++++++..++.+++++++ +++...+. ..+...+++++++|+++.+++.+++|.+|+++..|......+.++.....
T Consensus 209 ~l~~~~~~~i~~~i~~~i--~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~- 284 (344)
T PF12698_consen 209 FLAYFLVSLIQSLIIIII--IFGISGIP-FGNFLLLLLLLLLFSLAFISFGFLISSFFKNSSTAISVASIIILLLSFLS- 284 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhHHHHHHHHHHHH--HhccccCc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-
Confidence 456777777776655543 34421121 22566677889999999999999999999999888765444433111111
Q ss_pred HHHHHHhhccCcchhhHHHhhcceeeeeChhhHHHHHHHHHHHHHHHhhhhhcCCCccccccccccchhHHHHHHHHHHH
Q psy7219 82 LTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKLANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGA 161 (288)
Q Consensus 82 ~~~~il~~~~~~~~~~~~~~l~~~~~~~P~~~l~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~ 161 (288)
...+. .+..++.++++..++|.+.+.+++.++.. +. |..++..++++++.++
T Consensus 285 ~~~~~--------~~~~~~~~~~i~~~~P~~~~~~~~~~~~~-----------~~---------~~~~~~~~~~l~~~~~ 336 (344)
T PF12698_consen 285 GGFFP--------LSSLPSFLQWISSFLPFYWFIQGLRNIIY-----------GD---------WSEIWISLIILLLFAV 336 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHh--------HHhhHHHHHHHHHHhhHHHHHHHHHHHHH-----------hc---------HHHHHHHHHHHHHHHH
Confidence 01111 12234566778889999999988755431 11 1113356778888888
Q ss_pred HHHHHHHH
Q psy7219 162 LYSAINLS 169 (288)
Q Consensus 162 v~~~l~~~ 169 (288)
+++++.++
T Consensus 337 v~~~l~~~ 344 (344)
T PF12698_consen 337 VYLLLAIL 344 (344)
T ss_dssp --------
T ss_pred HHHHHHhC
Confidence 88877653
No 470
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.09 E-value=0.00013 Score=65.01 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=33.7
Q ss_pred cceeeeEEEEeCCC-EEEEEcCCCCChHHHHHHHhCCCCCC
Q psy7219 230 PAVNQISFGVGRGE-CFGLLGLNGAGKTTTFKMLTGAIKPT 269 (288)
Q Consensus 230 ~av~~is~~v~~Ge-~~gllG~NGaGKTT~~~~l~G~~~pt 269 (288)
.+++.++..+++++ .+.|.|+||+||||+++.+....++.
T Consensus 30 ~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~ 70 (269)
T TIGR03015 30 RAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQE 70 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC
Confidence 47777777777766 88899999999999999999988753
No 471
>PRK09183 transposase/IS protein; Provisional
Probab=97.09 E-value=0.00024 Score=63.41 Aligned_cols=44 Identities=27% Similarity=0.297 Sum_probs=35.2
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i 275 (288)
.+.++++ +++||.+.|+||+|+|||++...|.........++..
T Consensus 92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~ 135 (259)
T PRK09183 92 SLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRF 135 (259)
T ss_pred HHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 5677788 9999999999999999999999996654443335543
No 472
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=97.06 E-value=0.00068 Score=62.92 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=36.3
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
++.+..+.+.|++|+||||+++.|.++.+|..+.+.+.+.
T Consensus 175 v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~ 214 (340)
T TIGR03819 175 VAARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDA 214 (340)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCc
Confidence 5678899999999999999999999999999998888653
No 473
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.05 E-value=0.00063 Score=63.23 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=33.2
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCCCC-CCceEEEcccc
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHS 279 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-t~G~i~i~g~~ 279 (288)
..++..+.+.||+||||||+++.+.+..++ ..|.+..-+.+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp 160 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP 160 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence 457899999999999999999999987764 46777655444
No 474
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.02 E-value=0.00098 Score=67.16 Aligned_cols=43 Identities=23% Similarity=0.317 Sum_probs=33.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCC-EEEEEcCCCCChHHHHHHH
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGE-CFGLLGLNGAGKTTTFKML 262 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge-~~gllG~NGaGKTT~~~~l 262 (288)
.+.++|....++ . +.++|...+|+ +..+.|+|||||||+++.+
T Consensus 5 ~l~l~nf~~~~~-----~---~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai 48 (650)
T TIGR03185 5 QLTLENFGPYRG-----R---QTFDLSPSSPKPIILIGGLNGAGKTTLLDAI 48 (650)
T ss_pred EEEEeceEEEcC-----C---ceeeeecCCCCeEEEEECCCCCCHHHHHHHH
Confidence 367777765442 1 46788888777 8889999999999999986
No 475
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.02 E-value=0.00059 Score=60.19 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=25.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC--CCCCCceEE
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAY 274 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~--~~pt~G~i~ 274 (288)
.++++|++||||||+++.|+|. .+..+|.+.
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t 60 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCccc
Confidence 5789999999999999999998 555566554
No 476
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.98 E-value=0.00065 Score=54.42 Aligned_cols=30 Identities=33% Similarity=0.272 Sum_probs=26.3
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
+++|+++.|.|+.||||||+.|.+......
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999999876543
No 477
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.98 E-value=0.00087 Score=55.36 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=25.7
Q ss_pred eEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
.+....++.+..|.||||+||||+++.+....-.
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~ 47 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGG 47 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4444555669999999999999999997544333
No 478
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.95 E-value=0.00066 Score=72.23 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCChHHHHH---HHhCCCCC
Q psy7219 242 GECFGLLGLNGAGKTTTFK---MLTGAIKP 268 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~---~l~G~~~p 268 (288)
+.+.+|+|||||||||++. .+.|...+
T Consensus 23 ~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~ 52 (1179)
T TIGR02168 23 KGITGIVGPNGCGKSNIVDAIRWVLGEQSA 52 (1179)
T ss_pred CCcEEEECCCCCChhHHHHHHHHHHcCCch
Confidence 5599999999999999994 46776553
No 479
>KOG0066|consensus
Probab=96.92 E-value=0.00094 Score=63.03 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=48.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC--CCCCCCceEEEccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSI 280 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G--~~~pt~G~i~i~g~~i 280 (288)
+.+++..-+- .++..+.+-|+.|-.|...||+||||-||||+++-|.. +-.|..=++.+..+.+
T Consensus 265 IKiEnF~ISA----~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEv 330 (807)
T KOG0066|consen 265 IKIENFDISA----QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEV 330 (807)
T ss_pred ceeeeeeeec----ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeee
Confidence 5566665554 34678899999999999999999999999999999874 3344444556655544
No 480
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=96.91 E-value=0.00056 Score=62.59 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=41.4
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-CceEEEccccccch
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIRDS 283 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-~G~i~i~g~~i~~~ 283 (288)
-..+..++..++|.+-|+||||+||||.++.+.--+.+- +|.+++...++...
T Consensus 13 ~f~~lditf~e~~ttIivgpNGsGKTtvLdair~aL~~fid~~i~~~~ksl~ie 66 (440)
T COG3950 13 CFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFIDFFIYLRFKSLKIE 66 (440)
T ss_pred hhhhceeecCCCceEEEECCCCCChhhHHHHHHHHHHhhccceeecccchhhhc
Confidence 455677888899999999999999999999987655554 46888776665433
No 481
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.89 E-value=0.0011 Score=57.72 Aligned_cols=42 Identities=24% Similarity=0.383 Sum_probs=34.8
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhCC-CCC------CCceEEEcccc
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTGA-IKP------TSGNAYVMNHS 279 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~-~~p------t~G~i~i~g~~ 279 (288)
++++|+++.|.|++|+||||+...++.. ..| ..+.+++++.+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 6999999999999999999999988743 233 37888888765
No 482
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=96.88 E-value=0.00087 Score=71.00 Aligned_cols=43 Identities=30% Similarity=0.440 Sum_probs=33.3
Q ss_pred EEEEeeeEEeccccccccceeeeEEEE---eCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGV---GRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v---~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
+.++|+....+ . ..++|.. ..+.+|+|.|+|||||||+++.|+
T Consensus 6 l~~~nf~s~~~----~----~~idf~~~~l~~~~l~~I~G~tGaGKStildai~ 51 (1047)
T PRK10246 6 LRLKNLNSLKG----E----WKIDFTAEPFASNGLFAITGPTGAGKTTLLDAIC 51 (1047)
T ss_pred EEeecceeEcC----C----ceEEEeeccCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 56677654431 1 2588885 459999999999999999999998
No 483
>PTZ00035 Rad51 protein; Provisional
Probab=96.84 E-value=0.00088 Score=62.10 Aligned_cols=42 Identities=26% Similarity=0.418 Sum_probs=35.4
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhCCCC-C-----CCceE-EEcccc
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIK-P-----TSGNA-YVMNHS 279 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-p-----t~G~i-~i~g~~ 279 (288)
++++|+++.|.|++|+||||+...++.... | ..|.+ ++++..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 799999999999999999999999986555 4 46666 888765
No 484
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.84 E-value=0.001 Score=70.50 Aligned_cols=32 Identities=41% Similarity=0.605 Sum_probs=26.4
Q ss_pred eEEEEeCCCEEEEEcCCCCChHHHHHHHh----CCCC
Q psy7219 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLT----GAIK 267 (288)
Q Consensus 235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~----G~~~ 267 (288)
++|+-. +.+|+|.|||||||||++..|+ |..+
T Consensus 20 idF~~~-~gl~~I~G~nGaGKSTildAI~~aL~G~~~ 55 (1042)
T TIGR00618 20 IDFTAL-GPIFLICGKTGAGKTTLLDAITYALYGKLP 55 (1042)
T ss_pred eeecCC-CCeEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 455543 3899999999999999999999 8754
No 485
>PRK00064 recF recombination protein F; Reviewed
Probab=96.82 E-value=0.0014 Score=61.45 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=29.7
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
-++++++...+| +..++|+|||||||++..|.....
T Consensus 13 ~~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l~~ 48 (361)
T PRK00064 13 NYEELDLELSPG-VNVLVGENGQGKTNLLEAIYLLAP 48 (361)
T ss_pred cccceEEEecCC-eEEEECCCCCCHHHHHHHHHHhCC
Confidence 445678888777 888999999999999999886543
No 486
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.81 E-value=0.0014 Score=58.84 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=27.0
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.+++.++...+| +..|.|+|||||||++..|.-..
T Consensus 11 ~~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~ 45 (270)
T cd03242 11 NYAELELEFEPG-VTVLVGENAQGKTNLLEAISLLA 45 (270)
T ss_pred CcceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhc
Confidence 445566776665 67899999999999998876544
No 487
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.80 E-value=0.001 Score=51.39 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.8
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q psy7219 245 FGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 245 ~gllG~NGaGKTT~~~~l~G~ 265 (288)
++++|+.|+||||+++.|+|.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999985
No 488
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.79 E-value=0.0014 Score=55.08 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q psy7219 244 CFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~ 263 (288)
...++|+||+|||+++..|.
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~ 43 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAIC 43 (178)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 88899999999999999874
No 489
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.78 E-value=0.0012 Score=58.42 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i 275 (288)
+++..+++|++|+||||+++.|.|......|++.-
T Consensus 119 ~~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~ 153 (245)
T TIGR00157 119 QNRISVFAGQSGVGKSSLINALDPSVKQQVNDISS 153 (245)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhhhhhccccceec
Confidence 35789999999999999999999998888887753
No 490
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.76 E-value=0.0012 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+++|.|+.||||||+.+.|+-.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998754
No 491
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.74 E-value=0.0011 Score=61.30 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=28.6
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCCCCCCceEE
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~ 274 (288)
+.-+.|.|+||+||||++|.++|..++..|.+.
T Consensus 25 ~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~ 57 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAG 57 (337)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHhhcccccccC
Confidence 456779999999999999999999998777663
No 492
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.72 E-value=0.001 Score=71.26 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=37.0
Q ss_pred eeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC-CCCCceEEEccc
Q psy7219 234 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-KPTSGNAYVMNH 278 (288)
Q Consensus 234 ~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~-~pt~G~i~i~g~ 278 (288)
-++++.++++++||.|++|+||||+.+.+.+.. ...+|.+++++.
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 356778899999999999999999999995544 445899988753
No 493
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.68 E-value=0.0012 Score=59.81 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=26.8
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCCCCC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAIKPT 269 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt 269 (288)
++|.+++++||+|+|||||...|++.....
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 578899999999999999999999887654
No 494
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.67 E-value=0.00064 Score=62.75 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=32.7
Q ss_pred eeeeEEEEeC--CCEEEEEcCCCCChHHHHHHHhCCCCCC
Q psy7219 232 VNQISFGVGR--GECFGLLGLNGAGKTTTFKMLTGAIKPT 269 (288)
Q Consensus 232 v~~is~~v~~--Ge~~gllG~NGaGKTT~~~~l~G~~~pt 269 (288)
.++++..+++ ++.++++|++|+||||+.+.|++.+.+.
T Consensus 150 w~~i~~~~~~~~~~~~~~~G~~~~gkstl~~~l~~~~~~~ 189 (325)
T TIGR01526 150 WKHIPREVRPFFVKTVAILGGESTGKSTLVNKLAAVFNTT 189 (325)
T ss_pred HHhCCHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 3457788888 9999999999999999999999986553
No 495
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.67 E-value=0.0023 Score=57.61 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=25.6
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
-.+++.+...+| ..+|+|+|||||||++..|.
T Consensus 11 ~~~~~~i~~~~~-~~~i~G~nGsGKS~il~ai~ 42 (276)
T cd03241 11 LIEELELDFEEG-LTVLTGETGAGKSILLDALS 42 (276)
T ss_pred ceeeeEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 345566766665 78899999999999998875
No 496
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.66 E-value=0.0018 Score=63.89 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=24.8
Q ss_pred eEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
+++...++.+++|.|+|||||||++..|+
T Consensus 20 ~~i~f~~~g~~~i~G~NG~GKStll~aI~ 48 (562)
T PHA02562 20 IEIQLDKVKKTLITGKNGAGKSTMLEALT 48 (562)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 45556677899999999999999998877
No 497
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.0012 Score=64.21 Aligned_cols=29 Identities=41% Similarity=0.606 Sum_probs=25.8
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
+++|++++++|++|+||||++..|++...
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999987543
No 498
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.64 E-value=0.00088 Score=66.88 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=35.3
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
.++++.++...+|+++.|.||+|+||||++++++++..+
T Consensus 98 ~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 98 TWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred HHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 367888899999999999999999999999999998765
No 499
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.59 E-value=0.0017 Score=60.89 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=28.8
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
-++++++...+| +..|.|+||+||||++..|..+.
T Consensus 13 ~~~~~~l~~~~~-~nvi~G~NGsGKT~lLeAi~~l~ 47 (365)
T TIGR00611 13 NYDAVDLELSPG-VNVIVGPNGQGKTNLLEAIYYLA 47 (365)
T ss_pred ceeeeEEEECCC-eEEEECCCCCCHHHHHHHHHHHc
Confidence 456788888777 66899999999999999987443
No 500
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=96.58 E-value=0.0035 Score=64.69 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=38.1
Q ss_pred eEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
+|+.+.+++..+++|++|+||||+++.|.+......+++.+-..
T Consensus 439 ~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~ 482 (800)
T PRK13898 439 FNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDK 482 (800)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCC
Confidence 56778888999999999999999999999988888888776543
Done!