Query psy7219
Match_columns 288
No_of_seqs 236 out of 2053
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 21:09:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 99.8 9.7E-19 3.3E-23 152.6 8.4 70 213-282 2-71 (235)
2 3tui_C Methionine import ATP-b 99.8 1.3E-18 4.3E-23 160.5 8.9 72 211-282 23-94 (366)
3 1vpl_A ABC transporter, ATP-bi 99.7 2.9E-18 9.8E-23 151.5 8.2 68 211-282 14-81 (256)
4 2pcj_A ABC transporter, lipopr 99.7 4.5E-18 1.5E-22 147.3 8.9 67 212-282 4-70 (224)
5 4g1u_C Hemin import ATP-bindin 99.7 5.3E-18 1.8E-22 150.6 9.5 68 211-282 10-77 (266)
6 3gfo_A Cobalt import ATP-bindi 99.7 4.4E-18 1.5E-22 151.8 8.9 67 212-281 7-73 (275)
7 1ji0_A ABC transporter; ATP bi 99.7 7.7E-18 2.6E-22 147.3 8.9 67 212-282 6-72 (240)
8 2olj_A Amino acid ABC transpor 99.7 7.2E-18 2.5E-22 149.5 8.7 66 212-281 24-89 (263)
9 1g6h_A High-affinity branched- 99.7 6.4E-18 2.2E-22 149.3 8.0 67 212-282 7-73 (257)
10 1b0u_A Histidine permease; ABC 99.7 9.8E-18 3.3E-22 148.5 8.6 66 212-281 6-71 (262)
11 2ff7_A Alpha-hemolysin translo 99.7 1.1E-17 3.9E-22 146.9 8.7 69 212-282 7-75 (247)
12 3fvq_A Fe(3+) IONS import ATP- 99.7 1.1E-17 3.7E-22 154.1 8.9 65 212-280 4-68 (359)
13 1sgw_A Putative ABC transporte 99.7 1.1E-17 3.9E-22 143.8 8.3 68 209-281 7-74 (214)
14 2ihy_A ABC transporter, ATP-bi 99.7 1.3E-17 4.4E-22 149.1 9.0 66 212-281 21-86 (279)
15 3rlf_A Maltose/maltodextrin im 99.7 1.5E-17 5E-22 154.3 9.0 67 212-282 3-69 (381)
16 1mv5_A LMRA, multidrug resista 99.7 2E-17 6.9E-22 144.9 8.6 67 213-282 2-68 (243)
17 2yz2_A Putative ABC transporte 99.7 2.8E-17 9.7E-22 145.9 8.6 71 212-282 2-73 (266)
18 2yyz_A Sugar ABC transporter, 99.7 3.4E-17 1.2E-21 151.0 9.0 67 212-282 3-69 (359)
19 2ixe_A Antigen peptide transpo 99.7 3.5E-17 1.2E-21 145.7 8.8 71 211-282 15-85 (271)
20 2pze_A Cystic fibrosis transme 99.7 4.5E-17 1.5E-21 141.5 8.7 65 211-277 5-69 (229)
21 1z47_A CYSA, putative ABC-tran 99.7 4.5E-17 1.5E-21 149.9 9.1 69 211-282 13-81 (355)
22 2it1_A 362AA long hypothetical 99.7 4.8E-17 1.6E-21 150.2 8.9 67 212-282 3-69 (362)
23 2d2e_A SUFC protein; ABC-ATPas 99.7 3.6E-17 1.2E-21 143.9 7.5 67 212-282 3-71 (250)
24 1v43_A Sugar-binding transport 99.7 5.6E-17 1.9E-21 150.2 8.8 67 212-282 11-77 (372)
25 1g29_1 MALK, maltose transport 99.7 5.1E-17 1.8E-21 150.6 8.4 67 212-282 3-69 (372)
26 2zu0_C Probable ATP-dependent 99.7 3.1E-17 1E-21 145.7 6.6 67 212-282 20-88 (267)
27 3nh6_A ATP-binding cassette SU 99.7 4.1E-17 1.4E-21 147.5 7.3 68 212-282 53-120 (306)
28 2cbz_A Multidrug resistance-as 99.7 5.8E-17 2E-21 141.5 7.4 64 212-277 3-66 (237)
29 1oxx_K GLCV, glucose, ABC tran 99.7 4.5E-17 1.5E-21 150.0 6.8 67 212-282 3-71 (353)
30 3d31_A Sulfate/molybdate ABC t 99.7 6.4E-17 2.2E-21 148.6 7.6 64 213-281 2-65 (348)
31 3gd7_A Fusion complex of cysti 99.7 1.5E-16 5.2E-21 148.2 8.7 69 211-282 18-86 (390)
32 2pjz_A Hypothetical protein ST 99.7 1.6E-16 5.6E-21 140.7 8.3 68 213-282 2-69 (263)
33 2onk_A Molybdate/tungstate ABC 99.7 1.8E-16 6.3E-21 138.6 8.3 62 213-281 2-63 (240)
34 2ghi_A Transport protein; mult 99.6 2.1E-16 7.3E-21 139.8 8.5 69 212-282 17-85 (260)
35 2qi9_C Vitamin B12 import ATP- 99.6 9E-16 3.1E-20 134.9 8.1 61 212-281 4-64 (249)
36 2nq2_C Hypothetical ABC transp 99.6 1E-15 3.5E-20 134.8 8.5 61 212-275 4-64 (253)
37 4a82_A Cystic fibrosis transme 99.6 9.8E-16 3.3E-20 149.9 8.3 70 211-282 338-407 (578)
38 3qf4_A ABC transporter, ATP-bi 99.6 1.8E-15 6.1E-20 148.3 8.8 70 211-282 340-409 (587)
39 3b60_A Lipid A export ATP-bind 99.6 2.1E-15 7.2E-20 147.6 9.3 70 211-282 340-409 (582)
40 3b5x_A Lipid A export ATP-bind 99.6 2.1E-15 7.3E-20 147.6 9.1 70 211-282 340-409 (582)
41 2yl4_A ATP-binding cassette SU 99.6 2.4E-15 8.3E-20 147.6 8.2 69 213-282 342-410 (595)
42 3qf4_B Uncharacterized ABC tra 99.6 2.2E-15 7.6E-20 147.9 7.7 68 212-282 354-421 (598)
43 2bbs_A Cystic fibrosis transme 99.5 2.8E-15 9.5E-20 134.6 5.2 60 212-277 40-99 (290)
44 1htw_A HI0065; nucleotide-bind 99.5 4.2E-16 1.4E-20 127.8 -5.1 62 216-282 11-72 (158)
45 4f4c_A Multidrug resistance pr 99.5 6.7E-14 2.3E-18 148.3 9.3 70 212-282 1076-1145(1321)
46 3g5u_A MCG1178, multidrug resi 99.5 9.6E-14 3.3E-18 146.7 9.2 70 212-282 387-456 (1284)
47 2iw3_A Elongation factor 3A; a 99.4 8E-14 2.7E-18 142.2 7.1 64 212-277 671-734 (986)
48 3g5u_A MCG1178, multidrug resi 99.4 1.1E-13 3.6E-18 146.4 7.7 70 212-282 1030-1099(1284)
49 4f4c_A Multidrug resistance pr 99.4 1.1E-13 3.9E-18 146.5 6.2 70 212-282 415-484 (1321)
50 3ozx_A RNAse L inhibitor; ATP 99.3 1.1E-12 3.6E-17 127.2 7.5 66 211-281 268-333 (538)
51 1yqt_A RNAse L inhibitor; ATP- 99.3 3.9E-13 1.3E-17 130.4 3.3 54 216-273 25-78 (538)
52 3bk7_A ABC transporter ATP-bin 99.3 6.1E-13 2.1E-17 130.6 3.2 54 216-273 95-148 (607)
53 3euj_A Chromosome partition pr 99.3 1.3E-12 4.5E-17 124.4 5.1 53 229-282 17-69 (483)
54 1yqt_A RNAse L inhibitor; ATP- 99.3 3.9E-12 1.4E-16 123.3 6.4 59 212-275 287-345 (538)
55 3bk7_A ABC transporter ATP-bin 99.3 3.9E-12 1.3E-16 124.8 6.4 59 212-275 357-415 (607)
56 2obl_A ESCN; ATPase, hydrolase 99.2 9E-13 3.1E-17 121.1 0.9 65 211-279 44-108 (347)
57 1z6g_A Guanylate kinase; struc 99.2 2.3E-12 7.8E-17 110.7 2.8 49 229-281 10-58 (218)
58 3j16_B RLI1P; ribosome recycli 99.2 7.6E-12 2.6E-16 122.7 2.6 59 211-273 68-134 (608)
59 2dpy_A FLII, flagellum-specifi 99.1 2.7E-12 9.1E-17 121.4 -1.5 64 211-278 130-193 (438)
60 1tq4_A IIGP1, interferon-induc 99.1 3.8E-12 1.3E-16 119.3 -0.8 52 229-280 36-107 (413)
61 3ux8_A Excinuclease ABC, A sub 99.1 5E-11 1.7E-15 118.4 6.4 65 216-281 19-111 (670)
62 3b9q_A Chloroplast SRP recepto 99.1 1.2E-11 4E-16 111.5 0.9 52 231-282 89-140 (302)
63 3b85_A Phosphate starvation-in 99.1 2.7E-12 9.2E-17 109.7 -3.5 42 228-274 12-53 (208)
64 2iw3_A Elongation factor 3A; a 99.1 1.1E-10 3.8E-15 119.2 7.6 51 210-264 433-483 (986)
65 1tf7_A KAIC; homohexamer, hexa 99.1 1.1E-11 3.7E-16 119.8 -0.7 54 228-281 24-80 (525)
66 2v9p_A Replication protein E1; 99.1 2.1E-12 7.3E-17 116.4 -5.3 57 213-277 102-158 (305)
67 1sq5_A Pantothenate kinase; P- 99.1 3E-12 1E-16 115.6 -5.0 64 211-280 36-123 (308)
68 2pt7_A CAG-ALFA; ATPase, prote 99.0 1.9E-11 6.5E-16 111.5 -0.3 49 231-279 160-208 (330)
69 2eyu_A Twitching motility prot 99.0 1.8E-11 6E-16 108.2 -0.7 50 230-281 15-65 (261)
70 2qm8_A GTPase/ATPase; G protei 99.0 2.6E-12 9E-17 117.5 -6.3 66 213-282 30-95 (337)
71 3j16_B RLI1P; ribosome recycli 99.0 1.5E-10 5.3E-15 113.4 4.3 54 216-272 350-408 (608)
72 2gza_A Type IV secretion syste 99.0 5.8E-11 2E-15 109.5 1.2 47 232-278 165-211 (361)
73 2og2_A Putative signal recogni 99.0 5.1E-11 1.7E-15 109.7 0.7 50 233-282 148-197 (359)
74 3ozx_A RNAse L inhibitor; ATP 99.0 1.3E-10 4.5E-15 112.5 3.1 50 232-281 14-75 (538)
75 3lnc_A Guanylate kinase, GMP k 99.0 1.6E-10 5.5E-15 99.5 3.2 44 230-273 15-71 (231)
76 1znw_A Guanylate kinase, GMP k 98.9 1.8E-10 6.2E-15 97.7 2.3 38 228-267 8-45 (207)
77 2npi_A Protein CLP1; CLP1-PCF1 98.9 5.7E-11 1.9E-15 112.9 -1.4 56 212-277 118-175 (460)
78 2yhs_A FTSY, cell division pro 98.9 1.4E-10 4.9E-15 110.4 0.8 50 232-281 283-332 (503)
79 2jeo_A Uridine-cytidine kinase 98.9 3.5E-10 1.2E-14 98.4 2.6 40 227-266 10-49 (245)
80 3aez_A Pantothenate kinase; tr 98.9 2.5E-11 8.4E-16 109.9 -5.4 57 209-271 40-119 (312)
81 1pui_A ENGB, probable GTP-bind 98.9 3.8E-10 1.3E-14 94.9 0.9 57 212-275 3-64 (210)
82 2oap_1 GSPE-2, type II secreti 98.8 5.9E-10 2E-14 107.2 0.7 50 230-279 248-297 (511)
83 1qhl_A Protein (cell division 98.8 8.9E-11 3E-15 101.5 -4.7 57 212-280 9-65 (227)
84 3ux8_A Excinuclease ABC, A sub 98.8 2E-09 6.8E-14 106.9 4.2 53 229-282 335-409 (670)
85 1u0l_A Probable GTPase ENGC; p 98.8 1E-09 3.5E-14 98.7 1.9 47 237-283 164-213 (301)
86 1s96_A Guanylate kinase, GMP k 98.8 1.1E-09 3.8E-14 94.1 2.0 44 238-281 12-57 (219)
87 1rj9_A FTSY, signal recognitio 98.8 1.4E-09 4.9E-14 97.9 2.7 41 241-281 101-141 (304)
88 2ehv_A Hypothetical protein PH 98.8 1.2E-09 4E-14 94.4 1.9 52 230-281 17-71 (251)
89 2qnr_A Septin-2, protein NEDD5 98.8 1.8E-09 6.3E-14 97.0 2.8 55 216-281 2-57 (301)
90 3e70_C DPA, signal recognition 98.8 1.6E-09 5.4E-14 98.6 1.5 43 239-281 126-168 (328)
91 4a74_A DNA repair and recombin 98.8 3.4E-09 1.2E-13 90.3 3.4 43 238-280 21-70 (231)
92 1cr0_A DNA primase/helicase; R 98.7 9.9E-10 3.4E-14 98.1 -0.3 51 229-279 22-73 (296)
93 4aby_A DNA repair protein RECN 98.7 2.3E-09 8E-14 100.0 1.6 53 229-282 48-138 (415)
94 1p9r_A General secretion pathw 98.7 5.6E-10 1.9E-14 104.8 -2.8 51 229-281 156-206 (418)
95 2qag_B Septin-6, protein NEDD5 98.7 1.8E-09 6.3E-14 101.2 -0.5 49 212-266 16-66 (427)
96 1t9h_A YLOQ, probable GTPase E 98.7 1.8E-09 6.3E-14 97.3 -1.0 47 237-283 168-217 (307)
97 3c8u_A Fructokinase; YP_612366 98.7 4.6E-09 1.6E-13 89.0 1.5 43 239-281 19-64 (208)
98 2vf7_A UVRA2, excinuclease ABC 98.7 1.7E-08 5.9E-13 102.0 5.8 45 211-264 501-546 (842)
99 2yv5_A YJEQ protein; hydrolase 98.7 1E-08 3.5E-13 92.2 3.6 45 238-283 161-208 (302)
100 1lw7_A Transcriptional regulat 98.6 1.7E-09 5.7E-14 99.7 -2.3 46 231-276 157-208 (365)
101 3szr_A Interferon-induced GTP- 98.6 2.4E-09 8.1E-14 105.2 -2.1 64 212-280 10-84 (608)
102 3uie_A Adenylyl-sulfate kinase 98.6 2.2E-09 7.5E-14 90.4 -2.8 53 229-282 12-66 (200)
103 2rcn_A Probable GTPase ENGC; Y 98.6 2.8E-08 9.7E-13 91.2 4.4 49 231-280 205-255 (358)
104 2qag_C Septin-7; cell cycle, c 98.6 2.5E-08 8.7E-13 93.5 3.9 51 211-271 10-60 (418)
105 2w0m_A SSO2452; RECA, SSPF, un 98.6 5.1E-09 1.7E-13 89.1 -0.9 53 228-280 8-61 (235)
106 2ewv_A Twitching motility prot 98.6 5.7E-09 1.9E-13 96.6 -0.9 48 231-280 127-175 (372)
107 3nwj_A ATSK2; P loop, shikimat 98.5 4E-09 1.4E-13 92.4 -2.0 53 211-266 16-72 (250)
108 4eun_A Thermoresistant glucoki 98.5 6.3E-08 2.2E-12 81.3 3.0 48 231-282 18-65 (200)
109 2o8b_B DNA mismatch repair pro 98.4 1.2E-07 4E-12 98.0 4.9 54 211-268 749-814 (1022)
110 2r6f_A Excinuclease ABC subuni 98.4 1.3E-07 4.4E-12 96.3 5.0 44 211-263 628-671 (972)
111 2bbw_A Adenylate kinase 4, AK4 98.4 2.7E-08 9.2E-13 86.3 -0.0 39 241-279 26-67 (246)
112 3jvv_A Twitching mobility prot 98.4 3.2E-08 1.1E-12 91.0 0.4 52 229-280 103-162 (356)
113 2ygr_A Uvrabc system protein A 98.4 2.8E-07 9.6E-12 94.1 7.1 44 211-263 646-689 (993)
114 3kta_A Chromosome segregation 98.4 1.4E-07 4.8E-12 77.6 3.9 41 231-272 14-56 (182)
115 2x8a_A Nuclear valosin-contain 98.4 4.1E-08 1.4E-12 87.0 0.1 49 229-281 33-81 (274)
116 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 1.7E-07 5.9E-12 87.1 4.0 41 238-278 16-68 (392)
117 4e22_A Cytidylate kinase; P-lo 98.4 4.7E-08 1.6E-12 85.4 -0.1 42 240-281 25-77 (252)
118 2kjq_A DNAA-related protein; s 98.4 1.1E-07 3.6E-12 76.6 2.0 45 231-281 30-76 (149)
119 3thx_A DNA mismatch repair pro 98.4 1.8E-07 6.1E-12 95.7 3.9 60 212-271 631-699 (934)
120 1n0w_A DNA repair protein RAD5 98.3 2.8E-07 9.5E-12 79.0 4.3 42 238-279 20-68 (243)
121 1udx_A The GTP-binding protein 98.3 2.1E-07 7.3E-12 87.2 3.5 47 231-277 146-203 (416)
122 2vp4_A Deoxynucleoside kinase; 98.3 2E-07 6.9E-12 80.1 3.0 40 238-281 16-55 (230)
123 3thx_B DNA mismatch repair pro 98.3 1.6E-07 5.5E-12 95.8 2.5 52 212-263 640-694 (918)
124 1pzn_A RAD51, DNA repair and r 98.3 9.4E-08 3.2E-12 87.6 0.7 51 230-280 118-176 (349)
125 1ewq_A DNA mismatch repair pro 98.3 1.2E-07 4.2E-12 95.1 1.5 59 211-273 549-608 (765)
126 1wb9_A DNA mismatch repair pro 98.3 3.1E-07 1.1E-11 92.6 4.1 54 212-266 577-631 (800)
127 3pih_A Uvrabc system protein A 98.3 6.7E-07 2.3E-11 91.2 6.4 43 229-271 597-648 (916)
128 1zu4_A FTSY; GTPase, signal re 98.3 1E-07 3.4E-12 86.4 0.3 50 233-282 96-145 (320)
129 1rz3_A Hypothetical protein rb 98.3 1.5E-07 5.2E-12 79.1 1.2 42 239-280 19-60 (201)
130 3vaa_A Shikimate kinase, SK; s 98.3 4.4E-07 1.5E-11 76.0 3.5 40 227-266 10-49 (199)
131 2o5v_A DNA replication and rep 98.2 1.1E-06 3.9E-11 80.7 5.8 48 229-277 14-74 (359)
132 1in4_A RUVB, holliday junction 98.2 8E-09 2.7E-13 94.0 -8.7 63 215-281 21-94 (334)
133 1vma_A Cell division protein F 98.2 2.5E-07 8.5E-12 83.3 0.6 47 235-281 97-143 (306)
134 1oix_A RAS-related protein RAB 98.2 6.9E-07 2.4E-11 74.1 3.2 38 244-281 31-79 (191)
135 3cr8_A Sulfate adenylyltranfer 98.2 2.2E-07 7.5E-12 90.1 -0.0 45 238-282 365-411 (552)
136 1ls1_A Signal recognition part 98.2 3.2E-07 1.1E-11 82.1 0.8 48 233-282 91-138 (295)
137 3ec2_A DNA replication protein 98.2 1.4E-07 4.6E-12 77.7 -1.7 36 237-272 33-68 (180)
138 3ney_A 55 kDa erythrocyte memb 98.1 1.1E-06 3.9E-11 73.9 3.2 40 239-280 16-68 (197)
139 1svm_A Large T antigen; AAA+ f 98.1 3.5E-07 1.2E-11 84.6 -0.2 44 229-275 156-199 (377)
140 1ixz_A ATP-dependent metallopr 98.1 3.6E-07 1.2E-11 79.3 -0.2 49 229-281 38-86 (254)
141 1e69_A Chromosome segregation 98.1 2.1E-06 7.3E-11 77.5 4.6 30 234-264 17-46 (322)
142 3tqc_A Pantothenate kinase; bi 98.1 2.7E-07 9.4E-12 83.5 -1.5 47 229-275 73-127 (321)
143 1iy2_A ATP-dependent metallopr 98.1 4.4E-07 1.5E-11 80.0 -0.2 49 229-281 62-110 (278)
144 3qf7_A RAD50; ABC-ATPase, ATPa 98.1 2.4E-06 8.3E-11 78.6 4.6 34 229-263 11-44 (365)
145 2cvh_A DNA repair and recombin 98.1 5.8E-07 2E-11 75.8 0.4 49 229-279 6-55 (220)
146 2p67_A LAO/AO transport system 98.0 3.7E-07 1.3E-11 83.3 -1.4 52 229-280 43-94 (341)
147 2px0_A Flagellar biosynthesis 98.0 1.3E-06 4.4E-11 78.2 1.7 41 240-280 103-144 (296)
148 1w1w_A Structural maintenance 98.0 2.9E-06 1E-10 79.6 3.6 50 212-271 6-55 (430)
149 2www_A Methylmalonic aciduria 98.0 1.8E-06 6.1E-11 79.0 1.5 41 241-281 73-113 (349)
150 1tf7_A KAIC; homohexamer, hexa 97.9 3.3E-06 1.1E-10 81.4 2.2 43 236-279 275-319 (525)
151 3lda_A DNA repair protein RAD5 97.9 8.8E-06 3E-10 75.8 4.6 43 238-280 174-223 (400)
152 2dr3_A UPF0273 protein PH0284; 97.8 3.5E-06 1.2E-10 72.1 0.9 51 229-279 9-61 (247)
153 3k1j_A LON protease, ATP-depen 97.8 2.8E-06 9.5E-11 83.3 -0.2 54 228-281 46-100 (604)
154 1nlf_A Regulatory protein REPA 97.7 1.2E-05 4E-10 70.9 2.4 30 238-267 26-55 (279)
155 2ffh_A Protein (FFH); SRP54, s 97.7 9.3E-06 3.2E-10 76.2 1.6 48 233-282 91-138 (425)
156 1m7g_A Adenylylsulfate kinase; 97.7 5.3E-06 1.8E-10 70.0 -0.6 46 237-282 20-67 (211)
157 2qt1_A Nicotinamide riboside k 97.6 2.3E-05 7.7E-10 65.7 3.2 30 238-267 17-46 (207)
158 4ad8_A DNA repair protein RECN 97.6 1.2E-05 4.2E-10 77.2 1.6 35 230-265 49-83 (517)
159 1j8m_F SRP54, signal recogniti 97.6 8.1E-06 2.8E-10 73.0 -0.3 48 233-281 89-137 (297)
160 4eaq_A DTMP kinase, thymidylat 97.6 3E-05 1E-09 66.6 3.0 47 230-277 11-60 (229)
161 1m2o_B GTP-binding protein SAR 97.6 3.8E-05 1.3E-09 63.3 3.3 48 230-278 12-67 (190)
162 1sxj_E Activator 1 40 kDa subu 97.5 2.5E-05 8.4E-10 70.7 2.0 36 245-280 39-75 (354)
163 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 5.7E-05 1.9E-09 60.4 3.9 29 234-263 16-44 (149)
164 3m6a_A ATP-dependent protease 97.5 8.1E-06 2.8E-10 79.0 -1.3 49 229-278 96-144 (543)
165 2qtf_A Protein HFLX, GTP-bindi 97.5 6.2E-05 2.1E-09 69.2 4.0 37 244-280 181-228 (364)
166 2ohf_A Protein OLA1, GTP-bindi 97.5 5.6E-05 1.9E-09 70.1 3.4 40 239-278 19-69 (396)
167 1mky_A Probable GTP-binding pr 97.5 8.2E-05 2.8E-09 69.9 4.6 37 244-280 182-230 (439)
168 1f6b_A SAR1; gtpases, N-termin 97.4 2.7E-05 9.3E-10 64.7 1.1 49 229-278 13-69 (198)
169 2dhr_A FTSH; AAA+ protein, hex 97.4 3.9E-05 1.3E-09 73.4 1.6 48 230-281 54-101 (499)
170 3ice_A Transcription terminati 97.4 3.9E-05 1.3E-09 70.9 1.0 51 213-266 134-198 (422)
171 3t34_A Dynamin-related protein 97.3 7.5E-05 2.6E-09 68.2 2.7 43 229-274 24-68 (360)
172 2qag_A Septin-2, protein NEDD5 97.3 3.3E-05 1.1E-09 70.9 -0.7 51 212-272 17-67 (361)
173 3hr8_A Protein RECA; alpha and 97.2 0.0001 3.6E-09 67.4 1.7 51 230-280 47-100 (356)
174 1sxj_C Activator 1 40 kDa subu 97.2 1.3E-05 4.3E-10 72.7 -4.5 47 229-275 31-79 (340)
175 3qkt_A DNA double-strand break 97.1 0.00027 9.3E-09 64.0 4.0 28 234-262 16-43 (339)
176 3qks_A DNA double-strand break 97.1 0.00035 1.2E-08 58.7 4.0 29 234-263 16-44 (203)
177 3t61_A Gluconokinase; PSI-biol 97.0 0.00021 7.3E-09 59.4 1.9 35 242-280 18-52 (202)
178 2p5t_B PEZT; postsegregational 97.0 0.00032 1.1E-08 60.8 2.8 42 239-282 29-70 (253)
179 1odf_A YGR205W, hypothetical 3 96.9 0.00035 1.2E-08 62.1 2.7 29 241-269 30-58 (290)
180 3lxx_A GTPase IMAP family memb 96.9 0.00065 2.2E-08 58.0 4.0 28 244-271 31-58 (239)
181 1q3t_A Cytidylate kinase; nucl 96.8 0.00052 1.8E-08 58.6 2.9 34 240-273 14-50 (236)
182 3kl4_A SRP54, signal recogniti 96.8 0.00025 8.5E-09 66.6 0.8 40 241-280 96-135 (433)
183 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00013 4.6E-09 66.6 -1.0 37 230-266 10-48 (359)
184 1fzq_A ADP-ribosylation factor 96.7 0.00099 3.4E-08 54.1 3.4 28 244-271 18-49 (181)
185 2r6a_A DNAB helicase, replicat 96.6 0.00017 5.7E-09 68.1 -1.7 52 228-279 189-241 (454)
186 1lv7_A FTSH; alpha/beta domain 96.6 0.00077 2.6E-08 58.1 2.5 46 232-281 37-82 (257)
187 2zr9_A Protein RECA, recombina 96.6 0.00054 1.9E-08 62.5 1.6 48 230-277 47-97 (349)
188 1ypw_A Transitional endoplasmi 96.6 0.00046 1.6E-08 69.8 1.1 43 236-280 232-274 (806)
189 3ihw_A Centg3; RAS, centaurin, 96.6 0.002 7E-08 52.5 4.7 37 244-280 22-67 (184)
190 2ius_A DNA translocase FTSK; n 96.6 0.0011 3.7E-08 63.5 3.4 48 234-281 159-208 (512)
191 4ag6_A VIRB4 ATPase, type IV s 96.4 0.00096 3.3E-08 61.4 1.9 36 241-276 34-69 (392)
192 3auy_A DNA double-strand break 96.4 0.0023 7.9E-08 58.6 4.3 31 232-263 16-46 (371)
193 3cf0_A Transitional endoplasmi 96.3 0.00089 3E-08 59.5 1.1 42 237-280 44-85 (301)
194 1gvn_B Zeta; postsegregational 96.0 0.0035 1.2E-07 55.4 3.2 35 241-277 32-66 (287)
195 2vf7_A UVRA2, excinuclease ABC 96.0 0.0043 1.5E-07 62.8 4.2 40 211-259 14-53 (842)
196 3llm_A ATP-dependent RNA helic 95.9 0.0029 1E-07 53.8 2.2 25 239-263 73-97 (235)
197 1v5w_A DMC1, meiotic recombina 95.7 0.0056 1.9E-07 55.5 3.3 42 238-279 118-166 (343)
198 2ygr_A Uvrabc system protein A 95.7 0.0066 2.3E-07 62.2 4.0 40 211-259 24-63 (993)
199 2r6f_A Excinuclease ABC subuni 95.7 0.0066 2.3E-07 62.0 4.0 30 230-259 32-61 (972)
200 1ksh_A ARF-like protein 2; sma 95.6 0.014 4.7E-07 47.0 5.1 23 244-266 20-42 (186)
201 3lxw_A GTPase IMAP family memb 95.6 0.008 2.7E-07 51.7 3.7 24 244-267 23-46 (247)
202 2e87_A Hypothetical protein PH 95.6 0.0069 2.4E-07 55.0 3.5 25 242-266 167-191 (357)
203 1fnn_A CDC6P, cell division co 95.6 0.0063 2.2E-07 55.0 3.2 36 244-279 46-83 (389)
204 4fcw_A Chaperone protein CLPB; 95.5 0.0039 1.3E-07 54.9 1.6 32 242-273 47-78 (311)
205 2ged_A SR-beta, signal recogni 95.5 0.007 2.4E-07 49.1 3.0 24 244-267 50-73 (193)
206 1moz_A ARL1, ADP-ribosylation 95.4 0.0061 2.1E-07 48.8 2.4 28 244-271 20-51 (183)
207 3pih_A Uvrabc system protein A 95.4 0.006 2E-07 62.3 2.6 31 229-259 11-41 (916)
208 2ew1_A RAS-related protein RAB 95.4 0.013 4.5E-07 48.4 4.3 22 244-265 28-49 (201)
209 2oil_A CATX-8, RAS-related pro 95.4 0.01 3.5E-07 48.1 3.6 22 244-265 27-48 (193)
210 2z43_A DNA repair and recombin 95.4 0.01 3.5E-07 53.1 3.8 42 238-279 103-151 (324)
211 1sky_E F1-ATPase, F1-ATP synth 95.3 0.0039 1.3E-07 58.9 0.8 45 230-275 140-184 (473)
212 3t1o_A Gliding protein MGLA; G 95.3 0.0084 2.9E-07 48.4 2.7 26 244-269 16-41 (198)
213 3pqc_A Probable GTP-binding pr 95.3 0.0094 3.2E-07 48.1 3.0 23 244-266 25-47 (195)
214 1svi_A GTP-binding protein YSX 95.3 0.0094 3.2E-07 48.3 3.0 23 244-266 25-47 (195)
215 4bas_A ADP-ribosylation factor 95.3 0.015 5.2E-07 47.1 4.2 28 244-271 19-52 (199)
216 3cnl_A YLQF, putative uncharac 95.3 0.011 3.9E-07 51.4 3.6 29 243-271 100-128 (262)
217 3kkq_A RAS-related protein M-R 95.3 0.018 6.3E-07 46.0 4.7 22 244-265 20-41 (183)
218 2xtp_A GTPase IMAP family memb 95.2 0.014 4.8E-07 50.1 4.1 23 244-266 24-46 (260)
219 2bov_A RAla, RAS-related prote 95.2 0.015 5.1E-07 47.4 3.9 30 244-273 16-50 (206)
220 2ce7_A Cell division protein F 95.1 0.0038 1.3E-07 59.2 0.1 45 231-279 40-84 (476)
221 2qby_A CDC6 homolog 1, cell di 95.0 0.0055 1.9E-07 55.1 0.9 39 240-278 43-85 (386)
222 2cdn_A Adenylate kinase; phosp 94.9 0.017 5.8E-07 47.5 3.6 25 241-265 19-43 (201)
223 2y8e_A RAB-protein 6, GH09086P 94.8 0.017 5.8E-07 45.8 3.3 22 244-265 16-37 (179)
224 3cbq_A GTP-binding protein REM 94.8 0.014 4.9E-07 47.8 2.9 22 244-265 25-46 (195)
225 1gwn_A RHO-related GTP-binding 94.8 0.017 5.8E-07 47.9 3.3 29 244-272 30-63 (205)
226 1z0f_A RAB14, member RAS oncog 94.8 0.017 6E-07 45.7 3.3 23 244-266 17-39 (179)
227 3llu_A RAS-related GTP-binding 94.8 0.017 5.8E-07 47.2 3.2 25 244-268 22-46 (196)
228 2a9k_A RAS-related protein RAL 94.8 0.018 6.2E-07 45.9 3.3 22 244-265 20-41 (187)
229 3tkl_A RAS-related protein RAB 94.8 0.018 6E-07 46.6 3.3 23 244-266 18-40 (196)
230 1ukz_A Uridylate kinase; trans 94.8 0.016 5.6E-07 47.6 3.1 22 242-263 15-36 (203)
231 1ko7_A HPR kinase/phosphatase; 94.7 0.023 7.9E-07 50.9 4.2 35 229-264 132-166 (314)
232 3def_A T7I23.11 protein; chlor 94.7 0.023 7.8E-07 49.1 4.0 24 244-267 38-61 (262)
233 2h57_A ADP-ribosylation factor 94.7 0.016 5.6E-07 46.8 2.9 23 244-266 23-45 (190)
234 2j1l_A RHO-related GTP-binding 94.7 0.022 7.6E-07 47.2 3.8 22 244-265 36-57 (214)
235 3c5c_A RAS-like protein 12; GD 94.7 0.026 8.8E-07 45.7 4.0 30 244-273 23-57 (187)
236 2w58_A DNAI, primosome compone 94.6 0.014 4.6E-07 48.1 2.3 31 243-273 55-85 (202)
237 3bos_A Putative DNA replicatio 94.6 0.021 7.3E-07 47.6 3.5 28 241-268 51-78 (242)
238 1ypw_A Transitional endoplasmi 94.6 0.0035 1.2E-07 63.4 -1.7 44 235-280 504-547 (806)
239 3con_A GTPase NRAS; structural 94.6 0.02 6.8E-07 46.2 3.2 23 244-266 23-45 (190)
240 4gzl_A RAS-related C3 botulinu 94.5 0.019 6.6E-07 47.3 3.0 30 244-273 32-66 (204)
241 3oes_A GTPase rhebl1; small GT 94.5 0.022 7.5E-07 46.6 3.2 23 244-266 26-48 (201)
242 4dhe_A Probable GTP-binding pr 94.5 0.011 3.7E-07 49.2 1.4 23 244-266 31-53 (223)
243 2fg5_A RAB-22B, RAS-related pr 94.5 0.023 8E-07 46.1 3.4 28 244-271 25-57 (192)
244 1zj6_A ADP-ribosylation factor 94.5 0.022 7.6E-07 45.9 3.2 22 244-265 18-39 (187)
245 2o52_A RAS-related protein RAB 94.5 0.022 7.7E-07 46.6 3.2 23 244-266 27-49 (200)
246 3reg_A RHO-like small GTPase; 94.4 0.023 8E-07 46.0 3.3 23 244-266 25-47 (194)
247 2gf9_A RAS-related protein RAB 94.4 0.024 8.2E-07 45.8 3.3 23 244-266 24-46 (189)
248 2il1_A RAB12; G-protein, GDP, 94.4 0.023 7.7E-07 46.2 3.2 23 244-266 28-50 (192)
249 2wsm_A Hydrogenase expression/ 94.3 0.019 6.3E-07 47.8 2.5 22 244-265 32-53 (221)
250 1jwy_B Dynamin A GTPase domain 94.3 0.022 7.7E-07 50.2 3.2 24 244-267 26-49 (315)
251 3tlx_A Adenylate kinase 2; str 94.3 0.024 8E-07 48.6 3.2 23 242-264 29-51 (243)
252 2qu8_A Putative nucleolar GTP- 94.3 0.025 8.4E-07 47.5 3.2 23 244-266 31-53 (228)
253 1uj2_A Uridine-cytidine kinase 94.3 0.023 8E-07 48.7 3.1 22 244-265 24-45 (252)
254 2h17_A ADP-ribosylation factor 94.2 0.022 7.6E-07 45.7 2.7 23 244-266 23-45 (181)
255 1zd9_A ADP-ribosylation factor 94.2 0.028 9.6E-07 45.4 3.3 22 244-265 24-45 (188)
256 2a5j_A RAS-related protein RAB 94.2 0.027 9.2E-07 45.6 3.2 23 244-266 23-45 (191)
257 1z06_A RAS-related protein RAB 94.2 0.028 9.6E-07 45.4 3.3 22 244-265 22-43 (189)
258 1x3s_A RAS-related protein RAB 94.2 0.029 1E-06 45.2 3.3 22 244-265 17-38 (195)
259 3dz8_A RAS-related protein RAB 94.1 0.022 7.5E-07 46.2 2.5 23 244-266 25-47 (191)
260 2atv_A RERG, RAS-like estrogen 94.1 0.03 1E-06 45.5 3.3 29 244-272 30-63 (196)
261 2f6r_A COA synthase, bifunctio 94.1 0.026 9.1E-07 49.4 3.1 21 243-263 76-96 (281)
262 2fv8_A H6, RHO-related GTP-bin 94.1 0.027 9.3E-07 46.3 3.0 23 244-266 27-49 (207)
263 3b9p_A CG5977-PA, isoform A; A 94.1 0.025 8.4E-07 49.4 2.8 27 241-267 53-79 (297)
264 2q3h_A RAS homolog gene family 94.0 0.031 1.1E-06 45.5 3.2 29 244-272 22-55 (201)
265 2f7s_A C25KG, RAS-related prot 94.0 0.038 1.3E-06 45.6 3.7 24 244-267 27-50 (217)
266 1h65_A Chloroplast outer envel 94.0 0.04 1.4E-06 47.7 4.0 23 244-266 41-63 (270)
267 2p5s_A RAS and EF-hand domain 94.0 0.031 1.1E-06 45.6 3.1 23 244-266 30-52 (199)
268 3v9p_A DTMP kinase, thymidylat 94.0 0.028 9.5E-07 47.9 2.9 27 240-266 23-49 (227)
269 2gco_A H9, RHO-related GTP-bin 94.0 0.032 1.1E-06 45.6 3.2 23 244-266 27-49 (201)
270 2b6h_A ADP-ribosylation factor 93.9 0.032 1.1E-06 45.4 3.1 23 244-266 31-53 (192)
271 3dm5_A SRP54, signal recogniti 93.9 0.022 7.5E-07 53.4 2.2 35 241-275 99-133 (443)
272 1puj_A YLQF, conserved hypothe 93.9 0.041 1.4E-06 48.4 3.8 26 243-268 121-146 (282)
273 3cph_A RAS-related protein SEC 93.9 0.037 1.3E-06 45.3 3.4 23 244-266 22-44 (213)
274 1ak2_A Adenylate kinase isoenz 93.9 0.038 1.3E-06 46.7 3.5 24 241-264 15-38 (233)
275 2g3y_A GTP-binding protein GEM 93.8 0.042 1.4E-06 46.0 3.7 23 244-266 39-61 (211)
276 4a1f_A DNAB helicase, replicat 93.8 0.0092 3.2E-07 54.1 -0.5 48 228-275 32-79 (338)
277 2aka_B Dynamin-1; fusion prote 93.8 0.031 1.1E-06 48.8 2.9 24 244-267 28-51 (299)
278 3lv8_A DTMP kinase, thymidylat 93.8 0.038 1.3E-06 47.4 3.4 26 241-266 26-51 (236)
279 3bh0_A DNAB-like replicative h 93.7 0.016 5.6E-07 51.7 1.0 37 228-264 54-90 (315)
280 2atx_A Small GTP binding prote 93.7 0.041 1.4E-06 44.5 3.3 22 244-265 20-41 (194)
281 4dcu_A GTP-binding protein ENG 93.6 0.029 9.8E-07 52.7 2.5 23 244-266 25-47 (456)
282 3tqf_A HPR(Ser) kinase; transf 93.6 0.062 2.1E-06 44.0 4.1 34 229-263 4-37 (181)
283 2x77_A ADP-ribosylation factor 93.5 0.032 1.1E-06 44.9 2.4 22 244-265 24-45 (189)
284 2qmh_A HPR kinase/phosphorylas 93.5 0.077 2.6E-06 44.4 4.7 36 229-265 22-57 (205)
285 2ck3_D ATP synthase subunit be 93.4 0.054 1.8E-06 51.2 4.0 30 237-266 148-177 (482)
286 3a8t_A Adenylate isopentenyltr 93.4 0.051 1.7E-06 49.1 3.7 27 241-267 39-65 (339)
287 3zvl_A Bifunctional polynucleo 93.4 0.048 1.7E-06 50.6 3.7 35 239-277 255-289 (416)
288 2v3c_C SRP54, signal recogniti 93.4 0.013 4.5E-07 54.8 -0.2 33 243-275 100-132 (432)
289 2i1q_A DNA repair and recombin 93.3 0.044 1.5E-06 48.7 3.1 34 231-264 86-120 (322)
290 1u94_A RECA protein, recombina 93.3 0.026 9E-07 51.4 1.6 49 229-277 48-99 (356)
291 3h4m_A Proteasome-activating n 93.3 0.046 1.6E-06 47.3 3.1 29 239-267 48-76 (285)
292 3l0o_A Transcription terminati 93.3 0.051 1.7E-06 50.2 3.4 32 234-265 167-198 (427)
293 2xau_A PRE-mRNA-splicing facto 93.2 0.019 6.4E-07 57.7 0.6 32 239-270 106-137 (773)
294 1sxj_D Activator 1 41 kDa subu 93.2 0.013 4.3E-07 52.4 -0.6 37 231-267 45-83 (353)
295 2hup_A RAS-related protein RAB 93.2 0.041 1.4E-06 45.1 2.5 23 244-266 31-53 (201)
296 1jbk_A CLPB protein; beta barr 93.1 0.06 2.1E-06 42.8 3.4 25 242-266 43-67 (195)
297 2hf9_A Probable hydrogenase ni 93.1 0.05 1.7E-06 45.2 3.0 23 244-266 40-62 (226)
298 2yc2_C IFT27, small RAB-relate 93.0 0.022 7.6E-07 46.4 0.6 22 244-265 22-43 (208)
299 3ld9_A DTMP kinase, thymidylat 93.0 0.058 2E-06 45.8 3.2 26 241-266 20-45 (223)
300 3n70_A Transport activator; si 92.9 0.07 2.4E-06 41.6 3.4 27 242-268 24-50 (145)
301 3umf_A Adenylate kinase; rossm 92.8 0.049 1.7E-06 46.1 2.5 26 240-265 27-52 (217)
302 2qz4_A Paraplegin; AAA+, SPG7, 92.8 0.065 2.2E-06 45.5 3.4 28 239-266 36-63 (262)
303 1njg_A DNA polymerase III subu 92.8 0.042 1.4E-06 45.4 2.1 23 244-266 47-69 (250)
304 3q3j_B RHO-related GTP-binding 92.7 0.068 2.3E-06 44.3 3.3 30 244-273 29-63 (214)
305 3l0i_B RAS-related protein RAB 92.7 0.028 9.5E-07 45.9 0.8 25 244-268 35-59 (199)
306 2zts_A Putative uncharacterize 92.7 0.072 2.5E-06 44.8 3.5 34 229-262 16-50 (251)
307 1p5z_B DCK, deoxycytidine kina 92.7 0.047 1.6E-06 47.0 2.3 27 240-266 22-48 (263)
308 3p32_A Probable GTPase RV1496/ 92.7 0.041 1.4E-06 49.9 2.0 24 243-266 80-103 (355)
309 1l8q_A Chromosomal replication 92.6 0.051 1.8E-06 48.2 2.5 28 242-269 37-64 (324)
310 2z4s_A Chromosomal replication 92.4 0.037 1.3E-06 51.7 1.3 38 242-279 130-170 (440)
311 1lnz_A SPO0B-associated GTP-bi 92.1 0.091 3.1E-06 47.5 3.4 34 233-266 149-182 (342)
312 2p65_A Hypothetical protein PF 92.0 0.073 2.5E-06 42.2 2.5 25 242-266 43-67 (187)
313 3gj0_A GTP-binding nuclear pro 92.0 0.057 2E-06 44.8 1.9 28 244-271 17-49 (221)
314 2q6t_A DNAB replication FORK h 92.0 0.043 1.5E-06 51.3 1.2 39 229-267 187-225 (444)
315 1fx0_B ATP synthase beta chain 91.9 0.068 2.3E-06 50.7 2.5 31 237-267 160-190 (498)
316 2x2e_A Dynamin-1; nitration, h 91.7 0.1 3.5E-06 47.1 3.3 23 244-266 33-55 (353)
317 3th5_A RAS-related C3 botulinu 90.9 0.034 1.2E-06 45.5 0.0 22 244-265 32-53 (204)
318 3ec1_A YQEH GTPase; atnos1, at 91.5 0.078 2.7E-06 48.4 2.3 25 241-265 161-185 (369)
319 2j37_W Signal recognition part 91.4 0.1 3.5E-06 49.7 3.2 22 242-263 101-122 (504)
320 3geh_A MNME, tRNA modification 91.4 0.066 2.3E-06 50.5 1.8 24 242-265 224-247 (462)
321 4a9a_A Ribosome-interacting GT 91.1 0.076 2.6E-06 48.7 1.9 23 244-266 74-96 (376)
322 3dpu_A RAB family protein; roc 91.0 0.12 4E-06 49.4 3.2 23 244-266 43-65 (535)
323 3h2y_A GTPase family protein; 90.9 0.087 3E-06 48.1 2.1 25 241-265 159-183 (368)
324 2v1u_A Cell division control p 90.7 0.11 3.7E-06 46.6 2.4 39 241-279 43-88 (387)
325 2qpt_A EH domain-containing pr 90.6 0.13 4.4E-06 49.6 3.0 24 244-267 67-90 (550)
326 3gee_A MNME, tRNA modification 90.5 0.12 4E-06 49.0 2.6 23 244-266 235-257 (476)
327 2hjg_A GTP-binding protein ENG 90.4 0.17 5.7E-06 47.1 3.5 24 244-267 177-200 (436)
328 3o47_A ADP-ribosylation factor 90.3 0.14 4.7E-06 45.8 2.8 23 244-266 167-189 (329)
329 3uk6_A RUVB-like 2; hexameric 90.2 0.17 6E-06 45.3 3.4 38 241-278 69-106 (368)
330 3syl_A Protein CBBX; photosynt 90.2 0.18 6.3E-06 43.9 3.5 26 241-266 66-91 (309)
331 2wkq_A NPH1-1, RAS-related C3 90.2 0.16 5.3E-06 44.7 3.0 31 242-272 155-190 (332)
332 1f5n_A Interferon-induced guan 90.1 0.2 6.7E-06 48.7 3.8 24 243-266 39-62 (592)
333 2c61_A A-type ATP synthase non 90.0 0.1 3.5E-06 49.1 1.8 32 237-268 147-178 (469)
334 1xzp_A Probable tRNA modificat 89.6 0.055 1.9E-06 51.3 -0.5 24 243-266 244-267 (482)
335 1yrb_A ATP(GTP)binding protein 89.6 0.2 7E-06 42.5 3.2 21 243-263 15-35 (262)
336 2r62_A Cell division protease 89.6 0.071 2.4E-06 45.7 0.2 21 245-265 47-67 (268)
337 2chg_A Replication factor C sm 89.5 0.19 6.6E-06 40.7 2.9 21 245-265 41-61 (226)
338 2j69_A Bacterial dynamin-like 89.5 0.24 8.3E-06 49.0 4.0 23 244-266 71-93 (695)
339 3c5h_A Glucocorticoid receptor 89.4 0.22 7.6E-06 42.6 3.3 21 244-264 21-50 (255)
340 3co5_A Putative two-component 89.4 0.15 5.2E-06 39.5 2.1 25 243-267 28-52 (143)
341 2qgz_A Helicase loader, putati 89.4 0.23 7.9E-06 44.0 3.5 26 242-267 152-177 (308)
342 1xp8_A RECA protein, recombina 89.4 0.22 7.6E-06 45.4 3.4 35 230-264 60-96 (366)
343 1tue_A Replication protein E1; 89.2 0.17 5.9E-06 42.5 2.4 28 239-266 55-82 (212)
344 2r9v_A ATP synthase subunit al 89.2 0.24 8.3E-06 47.1 3.6 31 237-267 170-201 (515)
345 1zcb_A G alpha I/13; GTP-bindi 89.1 0.22 7.5E-06 45.3 3.2 21 243-263 34-54 (362)
346 2vhj_A Ntpase P4, P4; non- hyd 89.1 0.24 8.3E-06 44.5 3.3 34 232-265 113-146 (331)
347 2qby_B CDC6 homolog 3, cell di 88.9 0.26 8.8E-06 44.2 3.5 25 242-266 45-69 (384)
348 2xxa_A Signal recognition part 88.9 0.22 7.6E-06 46.4 3.1 25 241-265 99-123 (433)
349 1ofh_A ATP-dependent HSL prote 88.9 0.22 7.6E-06 43.2 3.0 25 242-266 50-74 (310)
350 3te6_A Regulatory protein SIR3 88.9 0.15 5E-06 45.7 1.8 42 241-282 44-93 (318)
351 3gqb_A V-type ATP synthase alp 88.9 0.23 8E-06 47.7 3.2 29 237-265 216-244 (578)
352 3vr4_A V-type sodium ATPase ca 88.8 0.25 8.6E-06 47.6 3.4 29 237-265 227-255 (600)
353 3e1s_A Exodeoxyribonuclease V, 88.7 0.14 4.9E-06 49.5 1.7 35 241-275 203-237 (574)
354 3vr4_D V-type sodium ATPase su 88.6 0.15 5.3E-06 47.8 1.8 37 231-268 141-177 (465)
355 3gqb_B V-type ATP synthase bet 88.4 0.13 4.6E-06 48.2 1.2 32 237-268 142-173 (464)
356 3pvs_A Replication-associated 88.4 0.089 3E-06 49.3 0.0 30 244-273 52-81 (447)
357 3hws_A ATP-dependent CLP prote 88.3 0.25 8.4E-06 44.5 3.0 25 242-266 51-75 (363)
358 1bif_A 6-phosphofructo-2-kinas 88.2 0.27 9.3E-06 46.1 3.2 24 242-265 39-62 (469)
359 1x6v_B Bifunctional 3'-phospho 88.1 0.26 9E-06 48.1 3.2 26 241-266 51-76 (630)
360 1knx_A Probable HPR(Ser) kinas 88.1 0.44 1.5E-05 42.5 4.3 34 230-264 136-169 (312)
361 1d2n_A N-ethylmaleimide-sensit 88.1 0.25 8.6E-06 42.4 2.7 22 244-265 66-87 (272)
362 3mfy_A V-type ATP synthase alp 88.1 0.19 6.6E-06 48.3 2.1 29 237-265 222-250 (588)
363 1wb1_A Translation elongation 88.0 0.28 9.7E-06 46.3 3.2 23 244-266 21-43 (482)
364 3d8b_A Fidgetin-like protein 1 87.7 0.34 1.2E-05 43.7 3.5 26 241-266 116-141 (357)
365 3t15_A Ribulose bisphosphate c 87.6 0.29 9.9E-06 42.9 2.9 23 244-266 38-60 (293)
366 1xwi_A SKD1 protein; VPS4B, AA 87.6 0.33 1.1E-05 43.1 3.3 26 241-266 44-69 (322)
367 3izq_1 HBS1P, elongation facto 87.4 0.32 1.1E-05 47.4 3.3 24 242-265 167-190 (611)
368 1g8f_A Sulfate adenylyltransfe 87.4 0.26 9E-06 47.0 2.6 29 240-268 393-421 (511)
369 1fx0_A ATP synthase alpha chai 87.3 0.27 9.1E-06 46.7 2.6 31 237-267 158-189 (507)
370 2gks_A Bifunctional SAT/APS ki 87.3 0.32 1.1E-05 46.8 3.2 26 241-266 371-396 (546)
371 2qe7_A ATP synthase subunit al 87.2 0.25 8.5E-06 46.9 2.3 31 237-267 157-188 (502)
372 1m8p_A Sulfate adenylyltransfe 87.0 0.33 1.1E-05 47.0 3.1 26 241-266 395-420 (573)
373 3qq5_A Small GTP-binding prote 87.0 0.13 4.4E-06 47.9 0.2 23 244-266 36-58 (423)
374 3lvq_E ARF-GAP with SH3 domain 86.9 0.34 1.2E-05 45.5 3.1 23 244-266 324-346 (497)
375 2axn_A 6-phosphofructo-2-kinas 86.9 0.36 1.2E-05 46.1 3.2 24 241-264 34-57 (520)
376 2bjv_A PSP operon transcriptio 86.7 0.5 1.7E-05 40.3 3.8 37 243-279 30-67 (265)
377 3bgw_A DNAB-like replicative h 86.7 0.17 6E-06 47.3 0.9 36 229-264 184-219 (444)
378 1um8_A ATP-dependent CLP prote 86.7 0.35 1.2E-05 43.7 3.0 23 244-266 74-96 (376)
379 1zun_B Sulfate adenylate trans 86.6 0.3 1E-05 45.3 2.5 22 244-265 26-47 (434)
380 3eie_A Vacuolar protein sortin 86.6 0.43 1.5E-05 42.2 3.4 26 241-266 50-75 (322)
381 2ck3_A ATP synthase subunit al 86.5 0.29 9.8E-06 46.6 2.3 31 237-267 157-188 (510)
382 2c9o_A RUVB-like 1; hexameric 86.3 0.46 1.6E-05 44.3 3.6 40 241-280 62-101 (456)
383 4dcu_A GTP-binding protein ENG 85.8 0.45 1.5E-05 44.4 3.3 26 241-266 194-219 (456)
384 2elf_A Protein translation elo 85.5 0.36 1.2E-05 44.0 2.4 20 244-263 23-42 (370)
385 2qen_A Walker-type ATPase; unk 85.3 0.54 1.8E-05 41.2 3.4 33 242-278 31-63 (350)
386 1lkx_A Myosin IE heavy chain; 85.2 0.48 1.6E-05 46.9 3.2 28 240-267 92-119 (697)
387 3pfi_A Holliday junction ATP-d 85.1 0.46 1.6E-05 42.0 2.9 23 244-266 57-79 (338)
388 3oaa_A ATP synthase subunit al 85.1 0.46 1.6E-05 45.1 2.9 34 231-265 152-186 (513)
389 1g41_A Heat shock protein HSLU 85.0 0.38 1.3E-05 45.0 2.3 25 244-268 52-76 (444)
390 1e9r_A Conjugal transfer prote 85.0 0.45 1.6E-05 43.9 2.9 22 242-263 53-74 (437)
391 1q57_A DNA primase/helicase; d 84.8 0.21 7.1E-06 47.3 0.5 38 229-266 229-266 (503)
392 3cmw_A Protein RECA, recombina 84.8 0.29 1E-05 53.0 1.6 42 238-279 728-770 (1706)
393 2qp9_X Vacuolar protein sortin 84.8 0.48 1.7E-05 42.7 2.9 27 240-266 82-108 (355)
394 3io5_A Recombination and repai 84.5 0.48 1.6E-05 42.5 2.6 41 238-279 25-68 (333)
395 3upu_A ATP-dependent DNA helic 84.1 0.51 1.7E-05 44.0 2.8 24 244-267 47-70 (459)
396 1hqc_A RUVB; extended AAA-ATPa 84.0 0.41 1.4E-05 41.9 2.0 22 244-265 40-61 (324)
397 2r44_A Uncharacterized protein 84.0 0.37 1.2E-05 42.6 1.7 27 241-267 45-71 (331)
398 2olr_A Phosphoenolpyruvate car 83.8 0.51 1.8E-05 45.0 2.6 19 241-259 240-258 (540)
399 1j3b_A ATP-dependent phosphoen 83.7 0.53 1.8E-05 44.9 2.7 30 231-261 214-244 (529)
400 1ii2_A Phosphoenolpyruvate car 83.7 0.54 1.8E-05 44.8 2.7 21 240-260 211-231 (524)
401 2v26_A Myosin VI; calmodulin-b 83.6 0.58 2E-05 46.9 3.1 28 240-267 138-165 (784)
402 3p26_A Elongation factor 1 alp 83.4 0.38 1.3E-05 45.3 1.6 22 244-265 35-56 (483)
403 4db1_A Myosin-7; S1DC, cardiac 83.3 0.61 2.1E-05 46.7 3.1 26 240-265 169-194 (783)
404 1w7j_A Myosin VA; motor protei 83.3 0.61 2.1E-05 46.8 3.1 27 240-266 154-180 (795)
405 3mca_A HBS1, elongation factor 83.3 0.51 1.7E-05 45.8 2.5 21 244-264 179-199 (592)
406 1w9i_A Myosin II heavy chain; 83.2 0.64 2.2E-05 46.4 3.2 26 240-265 170-195 (770)
407 1w5s_A Origin recognition comp 83.2 0.51 1.7E-05 42.6 2.3 24 243-266 51-76 (412)
408 3j2k_7 ERF3, eukaryotic polype 83.1 0.59 2E-05 43.5 2.8 22 244-265 19-40 (439)
409 4b4t_K 26S protease regulatory 83.1 0.57 2E-05 43.6 2.6 30 238-267 202-231 (428)
410 1sxj_A Activator 1 95 kDa subu 82.9 0.73 2.5E-05 43.7 3.4 25 242-266 77-101 (516)
411 1of1_A Thymidine kinase; trans 82.9 0.46 1.6E-05 43.5 1.8 26 242-267 49-74 (376)
412 2zan_A Vacuolar protein sortin 82.7 0.8 2.7E-05 42.6 3.5 27 240-266 165-191 (444)
413 3vfd_A Spastin; ATPase, microt 82.5 0.83 2.8E-05 41.5 3.5 26 241-266 147-172 (389)
414 1jr3_A DNA polymerase III subu 82.5 0.86 2.9E-05 40.5 3.5 24 244-267 40-63 (373)
415 4b4t_L 26S protease subunit RP 82.4 0.63 2.1E-05 43.4 2.6 30 238-267 211-240 (437)
416 3vqt_A RF-3, peptide chain rel 82.4 0.72 2.5E-05 44.3 3.1 23 241-263 30-52 (548)
417 3pxg_A Negative regulator of g 82.3 0.78 2.7E-05 43.0 3.3 25 242-266 201-225 (468)
418 2iut_A DNA translocase FTSK; n 82.3 1.1 3.8E-05 43.2 4.3 41 235-275 207-251 (574)
419 3nbx_X ATPase RAVA; AAA+ ATPas 82.2 1.1 3.7E-05 42.6 4.2 37 231-267 30-66 (500)
420 3e2i_A Thymidine kinase; Zn-bi 82.2 0.86 2.9E-05 38.4 3.1 24 240-263 26-50 (219)
421 4b4t_M 26S protease regulatory 82.1 0.66 2.2E-05 43.3 2.6 31 237-267 210-240 (434)
422 1iqp_A RFCS; clamp loader, ext 81.8 0.76 2.6E-05 39.9 2.9 23 244-266 48-70 (327)
423 1ytm_A Phosphoenolpyruvate car 81.6 0.76 2.6E-05 43.9 2.9 22 238-259 229-252 (532)
424 2fna_A Conserved hypothetical 81.2 0.91 3.1E-05 39.8 3.2 34 243-278 31-64 (357)
425 1g8x_A Myosin II heavy chain f 80.9 0.82 2.8E-05 47.2 3.0 25 240-264 170-194 (1010)
426 1kk8_A Myosin heavy chain, str 80.8 0.72 2.5E-05 46.6 2.6 25 240-264 167-191 (837)
427 2a5y_B CED-4; apoptosis; HET: 80.8 1.3 4.3E-05 42.3 4.2 35 242-276 152-191 (549)
428 4anj_A Unconventional myosin-V 80.8 0.83 2.9E-05 47.2 3.1 28 240-267 142-169 (1052)
429 3hu3_A Transitional endoplasmi 80.7 0.83 2.8E-05 43.2 2.9 28 239-266 235-262 (489)
430 2ycu_A Non muscle myosin 2C, a 80.7 0.82 2.8E-05 47.1 3.0 25 240-264 144-168 (995)
431 3q5d_A Atlastin-1; G protein, 80.4 0.77 2.6E-05 43.0 2.5 23 243-265 68-90 (447)
432 4b4t_J 26S protease regulatory 79.9 0.49 1.7E-05 43.7 1.0 40 239-280 179-218 (405)
433 1w36_D RECD, exodeoxyribonucle 79.9 1 3.4E-05 43.8 3.2 23 241-263 163-185 (608)
434 1g8p_A Magnesium-chelatase 38 79.8 0.62 2.1E-05 41.1 1.6 23 245-267 48-70 (350)
435 1n0u_A EF-2, elongation factor 79.7 0.6 2.1E-05 47.2 1.6 21 244-264 21-41 (842)
436 1r5b_A Eukaryotic peptide chai 79.7 0.75 2.6E-05 43.1 2.2 20 244-263 45-64 (467)
437 1cip_A Protein (guanine nucleo 79.7 1.1 3.6E-05 40.6 3.1 20 244-263 34-53 (353)
438 1sxj_B Activator 1 37 kDa subu 79.5 1 3.4E-05 39.1 2.8 22 245-266 45-66 (323)
439 2dfs_A Myosin-5A; myosin-V, in 79.4 0.97 3.3E-05 47.0 3.1 28 240-267 154-181 (1080)
440 2chq_A Replication factor C sm 79.4 1 3.4E-05 39.0 2.8 22 245-266 41-62 (319)
441 3cf2_A TER ATPase, transitiona 79.4 1.1 3.6E-05 45.2 3.2 41 238-280 234-274 (806)
442 1qvr_A CLPB protein; coiled co 79.2 0.8 2.7E-05 46.3 2.3 25 242-266 191-215 (854)
443 3hdt_A Putative kinase; struct 78.4 1.3 4.5E-05 37.2 3.1 21 243-263 15-35 (223)
444 4b4t_H 26S protease regulatory 78.2 0.62 2.1E-05 43.8 1.0 32 237-268 238-269 (467)
445 1r6b_X CLPA protein; AAA+, N-t 78.1 1.3 4.5E-05 43.9 3.5 27 240-266 205-231 (758)
446 1ojl_A Transcriptional regulat 77.9 1.2 4.2E-05 39.1 2.9 25 242-266 25-49 (304)
447 3zvr_A Dynamin-1; hydrolase, D 77.6 1.6 5.4E-05 43.7 3.8 24 244-267 53-76 (772)
448 1z6t_A APAF-1, apoptotic prote 77.1 1.3 4.6E-05 42.2 3.1 25 241-265 146-170 (591)
449 1qvr_A CLPB protein; coiled co 76.6 1.2 3.9E-05 45.1 2.6 36 243-278 589-625 (854)
450 3avx_A Elongation factor TS, e 75.1 1.3 4.4E-05 46.5 2.5 22 244-265 298-319 (1289)
451 4b4t_I 26S protease regulatory 75.1 1 3.4E-05 42.0 1.6 41 238-280 212-252 (437)
452 1u0j_A DNA replication protein 75.1 2 6.8E-05 37.3 3.3 25 241-265 103-127 (267)
453 3cmu_A Protein RECA, recombina 74.5 1.6 5.4E-05 48.2 3.1 52 230-281 718-772 (2050)
454 3f9v_A Minichromosome maintena 73.0 1.8 6.2E-05 41.9 2.8 24 244-267 329-352 (595)
455 3cmu_A Protein RECA, recombina 73.0 1.5 5E-05 48.4 2.4 51 229-279 368-421 (2050)
456 4ido_A Atlastin-1; GTPase, GTP 72.6 2.7 9.3E-05 39.3 3.8 21 243-263 68-88 (457)
457 1i84_S Smooth muscle myosin he 72.4 1.2 4.1E-05 46.8 1.5 25 240-264 167-191 (1184)
458 3czq_A Putative polyphosphate 72.1 4.5 0.00015 35.7 5.0 38 242-279 86-123 (304)
459 3pxi_A Negative regulator of g 71.1 2.4 8.1E-05 42.1 3.3 27 240-266 199-225 (758)
460 3vkw_A Replicase large subunit 71.0 2.4 8.3E-05 39.5 3.1 26 239-264 158-183 (446)
461 3u61_B DNA polymerase accessor 70.8 2.4 8.1E-05 37.0 2.9 22 245-266 51-72 (324)
462 1r6b_X CLPA protein; AAA+, N-t 70.5 2.4 8.1E-05 42.1 3.1 23 244-266 490-512 (758)
463 4akg_A Glutathione S-transfera 69.8 2.5 8.5E-05 48.0 3.4 24 242-265 923-946 (2695)
464 2gxq_A Heat resistant RNA depe 69.3 1.8 6.3E-05 34.8 1.7 19 241-259 37-55 (207)
465 4b3f_X DNA-binding protein smu 69.2 2.5 8.7E-05 41.1 3.0 22 241-262 204-225 (646)
466 2gk6_A Regulator of nonsense t 69.0 3.1 0.00011 40.4 3.5 34 242-275 195-229 (624)
467 2j9r_A Thymidine kinase; TK1, 68.8 2.8 9.4E-05 35.1 2.7 23 240-262 26-48 (214)
468 3pxi_A Negative regulator of g 68.7 2.7 9.3E-05 41.7 3.1 36 244-279 523-559 (758)
469 3cmw_A Protein RECA, recombina 68.5 2.9 0.0001 45.4 3.5 37 229-265 368-406 (1706)
470 1azs_C GS-alpha; complex (lyas 68.4 2.9 0.0001 38.4 3.0 20 244-263 42-61 (402)
471 3end_A Light-independent proto 68.1 3.2 0.00011 36.0 3.2 27 241-267 40-66 (307)
472 3b6e_A Interferon-induced heli 65.0 1.9 6.6E-05 34.7 1.0 23 241-263 47-69 (216)
473 1vec_A ATP-dependent RNA helic 63.9 3.2 0.00011 33.3 2.2 20 241-260 39-58 (206)
474 2wjy_A Regulator of nonsense t 63.8 4.3 0.00015 40.7 3.5 23 242-264 371-393 (800)
475 2pl3_A Probable ATP-dependent 63.5 3.5 0.00012 34.0 2.4 19 241-259 61-79 (236)
476 3lfu_A DNA helicase II; SF1 he 62.8 3.3 0.00011 39.9 2.4 19 242-260 22-40 (647)
477 3vkg_A Dynein heavy chain, cyt 62.5 3.6 0.00012 47.4 2.8 24 244-267 908-931 (3245)
478 2gno_A DNA polymerase III, gam 62.4 1.3 4.4E-05 39.1 -0.6 21 244-264 20-40 (305)
479 2va8_A SSO2462, SKI2-type heli 62.0 3 0.0001 40.9 1.9 20 240-259 44-63 (715)
480 1qde_A EIF4A, translation init 61.8 4.5 0.00015 33.0 2.7 19 241-259 50-68 (224)
481 3iuy_A Probable ATP-dependent 61.8 4.5 0.00015 33.2 2.7 20 241-260 56-75 (228)
482 1a5t_A Delta prime, HOLB; zinc 61.6 3.8 0.00013 36.2 2.4 23 244-266 26-48 (334)
483 2z83_A Helicase/nucleoside tri 61.4 2.3 7.7E-05 39.6 0.9 20 239-258 18-37 (459)
484 2fz4_A DNA repair protein RAD2 61.1 5.9 0.0002 33.2 3.4 25 241-265 107-131 (237)
485 1w4r_A Thymidine kinase; type 59.5 6.3 0.00022 32.4 3.1 22 241-262 19-41 (195)
486 2xzl_A ATP-dependent helicase 59.4 5.8 0.0002 39.8 3.5 22 242-263 375-396 (802)
487 3ber_A Probable ATP-dependent 59.2 3.6 0.00012 34.6 1.7 19 241-259 79-97 (249)
488 2z0m_A 337AA long hypothetical 57.9 5.9 0.0002 34.1 2.9 22 241-262 30-51 (337)
489 3dkp_A Probable ATP-dependent 56.8 4.2 0.00014 33.8 1.7 18 241-258 65-82 (245)
490 3fwy_A Light-independent proto 55.9 7.2 0.00025 34.4 3.2 30 235-264 41-70 (314)
491 2oxc_A Probable ATP-dependent 54.6 5.4 0.00019 32.8 2.0 19 241-259 60-78 (230)
492 2zj8_A DNA helicase, putative 54.2 4.8 0.00016 39.5 1.9 19 241-259 38-56 (720)
493 1t6n_A Probable ATP-dependent 53.7 7.9 0.00027 31.4 2.9 19 242-260 51-69 (220)
494 1wrb_A DJVLGB; RNA helicase, D 53.6 5.1 0.00018 33.4 1.7 19 241-259 59-77 (253)
495 3rc3_A ATP-dependent RNA helic 53.1 6.1 0.00021 38.8 2.4 18 241-258 154-171 (677)
496 1vt4_I APAF-1 related killer D 53.0 7.1 0.00024 40.7 2.9 23 242-264 150-172 (1221)
497 3fe2_A Probable ATP-dependent 52.7 6.2 0.00021 32.8 2.1 19 241-259 65-83 (242)
498 3cf2_A TER ATPase, transitiona 51.8 4.5 0.00016 40.6 1.2 28 241-268 510-537 (806)
499 3bor_A Human initiation factor 51.6 3.9 0.00013 34.0 0.6 19 241-259 66-84 (237)
500 2oze_A ORF delta'; para, walke 50.6 7.2 0.00025 33.4 2.2 26 242-267 34-62 (298)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.76 E-value=9.7e-19 Score=152.60 Aligned_cols=70 Identities=26% Similarity=0.489 Sum_probs=63.2
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|++|.|++..+.+++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 71 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEccc
Confidence 6899999999743223579999999999999999999999999999999999999999999999998753
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.75 E-value=1.3e-18 Score=160.52 Aligned_cols=72 Identities=25% Similarity=0.496 Sum_probs=65.8
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.++|++|.|+.++++..|++|+||+|++||++||+|||||||||++|+|+|+++|++|+|.++|.++..
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~ 94 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT 94 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSS
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence 479999999999753334679999999999999999999999999999999999999999999999999864
No 3
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.74 E-value=2.9e-18 Score=151.47 Aligned_cols=68 Identities=43% Similarity=0.667 Sum_probs=63.5
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++++|++|.|+ ++++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 14 ~~l~i~~l~~~y~----~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~ 81 (256)
T 1vpl_A 14 GAVVVKDLRKRIG----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE 81 (256)
T ss_dssp CCEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred CeEEEEEEEEEEC----CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence 4699999999995 3579999999999999999999999999999999999999999999999998754
No 4
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.73 E-value=4.5e-18 Score=147.33 Aligned_cols=67 Identities=24% Similarity=0.423 Sum_probs=62.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++|.|++ +++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 4 ~l~~~~l~~~y~~----~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 70 (224)
T 2pcj_A 4 ILRAENIKKVIRG----YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDY 70 (224)
T ss_dssp EEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCS
T ss_pred EEEEEeEEEEECC----EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCC
Confidence 5889999999953 569999999999999999999999999999999999999999999999998753
No 5
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.73 E-value=5.3e-18 Score=150.55 Aligned_cols=68 Identities=26% Similarity=0.551 Sum_probs=63.7
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.++|++|.|+ ++++++|+||+|++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 10 ~~l~~~~l~~~~~----~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 10 ALLEASHLHYHVQ----QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNS 77 (266)
T ss_dssp CEEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTT
T ss_pred ceEEEEeEEEEeC----CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCc
Confidence 4689999999995 3679999999999999999999999999999999999999999999999999864
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.73 E-value=4.4e-18 Score=151.78 Aligned_cols=67 Identities=36% Similarity=0.583 Sum_probs=62.6
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|++|.|++ ++++++|+||+|++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 7 ~l~i~~ls~~y~~---~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~ 73 (275)
T 3gfo_A 7 ILKVEELNYNYSD---GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPID 73 (275)
T ss_dssp EEEEEEEEEECTT---SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECC
T ss_pred EEEEEEEEEEECC---CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECC
Confidence 6899999999963 345999999999999999999999999999999999999999999999999984
No 7
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.72 E-value=7.7e-18 Score=147.33 Aligned_cols=67 Identities=34% Similarity=0.550 Sum_probs=62.6
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++|.|++ +++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 6 ~l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 72 (240)
T 1ji0_A 6 VLEVQSLHVYYGA----IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN 72 (240)
T ss_dssp EEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred eEEEEeEEEEECC----eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 5889999999953 569999999999999999999999999999999999999999999999998853
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.72 E-value=7.2e-18 Score=149.46 Aligned_cols=66 Identities=20% Similarity=0.330 Sum_probs=62.2
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|++|.|+ ++++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 24 ~l~i~~l~~~y~----~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~ 89 (263)
T 2olj_A 24 MIDVHQLKKSFG----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK 89 (263)
T ss_dssp SEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS
T ss_pred eEEEEeEEEEEC----CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 599999999995 356999999999999999999999999999999999999999999999999874
No 9
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.72 E-value=6.4e-18 Score=149.27 Aligned_cols=67 Identities=28% Similarity=0.558 Sum_probs=62.6
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++|.|+ ++++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 7 ~l~i~~l~~~y~----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~ 73 (257)
T 1g6h_A 7 ILRTENIVKYFG----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN 73 (257)
T ss_dssp EEEEEEEEEEET----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred EEEEeeeEEEEC----CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 589999999995 3569999999999999999999999999999999999999999999999998753
No 10
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.72 E-value=9.8e-18 Score=148.54 Aligned_cols=66 Identities=26% Similarity=0.426 Sum_probs=62.2
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|++|.|+ ++++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 6 ~l~i~~l~~~y~----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 6 KLHVIDLHKRYG----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNIN 71 (262)
T ss_dssp CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECC
T ss_pred eEEEeeEEEEEC----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcc
Confidence 589999999995 356999999999999999999999999999999999999999999999999885
No 11
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.71 E-value=1.1e-17 Score=146.89 Aligned_cols=69 Identities=22% Similarity=0.442 Sum_probs=62.8
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
-+.++|++|.|++ +++.+++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 7 ~~~~~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~ 75 (247)
T 2ff7_A 7 DITFRNIRFRYKP--DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLAL 75 (247)
T ss_dssp EEEEEEEEEESST--TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred ceeEEEEEEEeCC--CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence 5889999999942 13569999999999999999999999999999999999999999999999998753
No 12
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.71 E-value=1.1e-17 Score=154.13 Aligned_cols=65 Identities=32% Similarity=0.554 Sum_probs=61.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
.+.++|++|.|+ ++.+++|+||+|++||+++|+|||||||||++|+|+|+++|++|+|.++|.++
T Consensus 4 ~l~i~~ls~~y~----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC----CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 589999999995 36799999999999999999999999999999999999999999999999988
No 13
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.71 E-value=1.1e-17 Score=143.84 Aligned_cols=68 Identities=28% Similarity=0.477 Sum_probs=62.3
Q ss_pred CCCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+..++++|++|.|+ + ++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 7 ~~~~l~~~~ls~~y~----~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~ 74 (214)
T 1sgw_A 7 HGSKLEIRDLSVGYD----K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT 74 (214)
T ss_dssp --CEEEEEEEEEESS----S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG
T ss_pred CCceEEEEEEEEEeC----C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh
Confidence 456899999999994 3 6999999999999999999999999999999999999999999999998864
No 14
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.71 E-value=1.3e-17 Score=149.06 Aligned_cols=66 Identities=27% Similarity=0.461 Sum_probs=62.3
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|++|.|++ +++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 21 ~l~~~~l~~~y~~----~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~ 86 (279)
T 2ihy_A 21 LIQLDQIGRMKQG----KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPG 86 (279)
T ss_dssp EEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC
T ss_pred eEEEEeEEEEECC----EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcc
Confidence 6899999999953 57999999999999999999999999999999999999999999999999875
No 15
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.71 E-value=1.5e-17 Score=154.27 Aligned_cols=67 Identities=22% Similarity=0.444 Sum_probs=62.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++|.|+ ++.+++|+||+|++||+++|+|||||||||++|+|+|+++|++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~yg----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~ 69 (381)
T 3rlf_A 3 SVQLQNVTKAWG----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND 69 (381)
T ss_dssp CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred EEEEEeEEEEEC----CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCC
Confidence 488999999995 3679999999999999999999999999999999999999999999999998854
No 16
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.70 E-value=2e-17 Score=144.88 Aligned_cols=67 Identities=24% Similarity=0.435 Sum_probs=61.7
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|+++.|++ ++++++|+||+|++||++||+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus 2 l~~~~l~~~y~~---~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 68 (243)
T 1mv5_A 2 LSARHVDFAYDD---SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDN 68 (243)
T ss_dssp EEEEEEEECSSS---SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTT
T ss_pred EEEEEEEEEeCC---CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence 678999999942 3579999999999999999999999999999999999999999999999998753
No 17
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.69 E-value=2.8e-17 Score=145.86 Aligned_cols=71 Identities=27% Similarity=0.502 Sum_probs=62.3
Q ss_pred eEEEEeeeEEeccccc-cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~-~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++|.|+..+. .+++++|+||++++||++||+|+|||||||++|+|+|+.+|++|+|.++|.++.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~ 73 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG 73 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch
Confidence 3789999999952110 1569999999999999999999999999999999999999999999999988753
No 18
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.69 E-value=3.4e-17 Score=151.00 Aligned_cols=67 Identities=43% Similarity=0.616 Sum_probs=62.3
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++|.|+ ++.+++|+||++++||+++|+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus 3 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~ 69 (359)
T 2yyz_A 3 SIRVVNLKKYFG----KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVND 69 (359)
T ss_dssp CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred EEEEEEEEEEEC----CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCC
Confidence 378999999994 3579999999999999999999999999999999999999999999999998753
No 19
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.69 E-value=3.5e-17 Score=145.69 Aligned_cols=71 Identities=21% Similarity=0.385 Sum_probs=63.9
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.++|+++.|++. +++++++|+||+|++||+++|+|+|||||||++|+|+|+++|++|+|.++|.++.+
T Consensus 15 ~~l~~~~l~~~y~~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~ 85 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNH-PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQ 85 (271)
T ss_dssp CCEEEEEEEECCTTC-TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG
T ss_pred ceEEEEEEEEEeCCC-CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 369999999999531 12579999999999999999999999999999999999999999999999998853
No 20
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.69 E-value=4.5e-17 Score=141.49 Aligned_cols=65 Identities=25% Similarity=0.537 Sum_probs=60.0
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
..+.++|+++.|++ +++++++|+||++++||++||+|||||||||++|+|+|+.+|++|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 69 (229)
T 2pze_A 5 TEVVMENVTAFWEE--GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69 (229)
T ss_dssp EEEEEEEEEECSST--TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS
T ss_pred ceEEEEEEEEEeCC--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC
Confidence 36899999999953 246799999999999999999999999999999999999999999999987
No 21
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.69 E-value=4.5e-17 Score=149.92 Aligned_cols=69 Identities=32% Similarity=0.593 Sum_probs=63.2
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.++|++|.|++ ++.+++|+||+|++||+++|+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus 13 ~~l~~~~l~~~y~g---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~ 81 (355)
T 1z47_A 13 MTIEFVGVEKIYPG---GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTD 81 (355)
T ss_dssp EEEEEEEEEECCTT---STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred ceEEEEEEEEEEcC---CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCc
Confidence 47999999999931 3569999999999999999999999999999999999999999999999998753
No 22
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.68 E-value=4.8e-17 Score=150.18 Aligned_cols=67 Identities=30% Similarity=0.562 Sum_probs=62.2
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++|.|+ ++.+++|+||++++||+++|+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus 3 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~ 69 (362)
T 2it1_A 3 EIKLENIVKKFG----NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTE 69 (362)
T ss_dssp CEEEEEEEEESS----SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred EEEEEeEEEEEC----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence 378999999994 3569999999999999999999999999999999999999999999999998753
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.68 E-value=3.6e-17 Score=143.89 Aligned_cols=67 Identities=27% Similarity=0.429 Sum_probs=61.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC--CCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~--~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|+++.|+ ++++++|+||++++||++||+|+|||||||++|+|+|+ .+|++|+|.++|.++.+
T Consensus 3 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~ 71 (250)
T 2d2e_A 3 QLEIRDLWASID----GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILE 71 (250)
T ss_dssp EEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTT
T ss_pred eEEEEeEEEEEC----CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCC
Confidence 478999999995 35699999999999999999999999999999999998 89999999999998753
No 24
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.68 E-value=5.6e-17 Score=150.21 Aligned_cols=67 Identities=33% Similarity=0.551 Sum_probs=62.5
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++|.|+ ++.+++|+||+|++||+++|+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus 11 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~ 77 (372)
T 1v43_A 11 EVKLENLTKRFG----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTY 77 (372)
T ss_dssp CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred eEEEEEEEEEEC----CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCC
Confidence 489999999995 3569999999999999999999999999999999999999999999999998753
No 25
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.68 E-value=5.1e-17 Score=150.61 Aligned_cols=67 Identities=33% Similarity=0.591 Sum_probs=62.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++|.|+ ++.+++|+||+|++||+++|+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus 3 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~ 69 (372)
T 1g29_1 3 GVRLVDVWKVFG----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD 69 (372)
T ss_dssp EEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred EEEEEeEEEEEC----CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECcc
Confidence 478999999994 3579999999999999999999999999999999999999999999999998754
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.68 E-value=3.1e-17 Score=145.74 Aligned_cols=67 Identities=27% Similarity=0.398 Sum_probs=61.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC--CCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~--~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++|.|+ ++++++|+||+|++||++||+|+|||||||++|+|+|+ .+|++|+|.++|.++.+
T Consensus 20 ~l~~~~l~~~y~----~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~ 88 (267)
T 2zu0_C 20 MLSIKDLHVSVE----DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 88 (267)
T ss_dssp CEEEEEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGG
T ss_pred eEEEEeEEEEEC----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCc
Confidence 599999999994 35799999999999999999999999999999999999 47999999999998753
No 27
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.68 E-value=4.1e-17 Score=147.49 Aligned_cols=68 Identities=25% Similarity=0.414 Sum_probs=63.5
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|+++.|++ ++++++|+||.|++||++||+|+|||||||++|+|+|+++|++|+|.++|.++.+
T Consensus 53 ~i~~~~vs~~y~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~ 120 (306)
T 3nh6_A 53 RIEFENVHFSYAD---GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQ 120 (306)
T ss_dssp CEEEEEEEEESST---TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTS
T ss_pred eEEEEEEEEEcCC---CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEccc
Confidence 5999999999963 3579999999999999999999999999999999999999999999999999864
No 28
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.67 E-value=5.8e-17 Score=141.49 Aligned_cols=64 Identities=20% Similarity=0.422 Sum_probs=59.2
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
.+.++|+++.|++ +++++++|+||+|++||++||+|||||||||++|+|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 66 (237)
T 2cbz_A 3 SITVRNATFTWAR--SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG 66 (237)
T ss_dssp CEEEEEEEEESCT--TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS
T ss_pred eEEEEEEEEEeCC--CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 4789999999953 235799999999999999999999999999999999999999999999988
No 29
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.67 E-value=4.5e-17 Score=150.03 Aligned_cols=67 Identities=30% Similarity=0.623 Sum_probs=62.3
Q ss_pred eEEEEeeeEEecccccccc--ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKP--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~--av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|++|.|+ ++. +++|+||+|++||+++|+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus 3 ~l~i~~l~~~y~----~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~ 71 (353)
T 1oxx_K 3 RIIVKNVSKVFK----KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS 71 (353)
T ss_dssp CEEEEEEEEEEG----GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred EEEEEeEEEEEC----CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcc
Confidence 378999999995 356 9999999999999999999999999999999999999999999999998754
No 30
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.67 E-value=6.4e-17 Score=148.64 Aligned_cols=64 Identities=27% Similarity=0.488 Sum_probs=60.4
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++|++|.|+ ++ +++|+||++++||+++|+|||||||||++|+|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~y~----~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK----NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS----SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred EEEEEEEEEEC----CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 67899999994 35 999999999999999999999999999999999999999999999999875
No 31
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=148.20 Aligned_cols=69 Identities=28% Similarity=0.443 Sum_probs=63.2
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+.++|++|.|+. +++.+++|+||+|++||+++|+|||||||||++|+|+|+++ ++|+|+++|.++.+
T Consensus 18 ~~i~~~~l~~~y~~--~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~ 86 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE--GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDS 86 (390)
T ss_dssp CCEEEEEEEEESSS--SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTS
T ss_pred CeEEEEEEEEEecC--CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCc
Confidence 46999999999953 34679999999999999999999999999999999999998 99999999998854
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.65 E-value=1.6e-16 Score=140.71 Aligned_cols=68 Identities=28% Similarity=0.482 Sum_probs=60.1
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.++|++|.|++.++++++++|+||+++ ||++||+|+|||||||++|+|+|+. |++|+|.++|.++.+
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~ 69 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRK 69 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGG
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcc
Confidence 6799999999531111579999999999 9999999999999999999999999 999999999988753
No 33
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.65 E-value=1.8e-16 Score=138.57 Aligned_cols=62 Identities=29% Similarity=0.476 Sum_probs=58.0
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++|++|.|++ .++|+||++++ |++||+|||||||||++|+|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred EEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 578999999942 49999999999 999999999999999999999999999999999998875
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.65 E-value=2.1e-16 Score=139.76 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=61.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+.++|+++.|++. +.+++++|+||+|++||++||+|||||||||++|+|+|+++| +|+|.++|.++.+
T Consensus 17 ~l~i~~l~~~y~~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~ 85 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ-TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNK 85 (260)
T ss_dssp CEEEEEEEECCTTC-CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGG
T ss_pred eEEEEEEEEEeCCC-CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhh
Confidence 59999999999642 124699999999999999999999999999999999999987 8999999998753
No 35
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.61 E-value=9e-16 Score=134.89 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=56.8
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+.++|+++. ++++|+||++++||++||+|||||||||++|+|+|+.+|+ |+|.++|.++.
T Consensus 4 ~l~~~~l~~~--------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 4 VMQLQDVAES--------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEEET--------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGG
T ss_pred EEEEEceEEE--------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECC
Confidence 4788898764 4999999999999999999999999999999999999999 99999999874
No 36
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.61 E-value=1e-15 Score=134.81 Aligned_cols=61 Identities=31% Similarity=0.540 Sum_probs=56.3
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i 275 (288)
.+.++|+++.|++ ++++++|+||+|++||++||+|||||||||++|+|+|+.+|++|+|.+
T Consensus 4 ~l~i~~l~~~y~~---~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~ 64 (253)
T 2nq2_C 4 ALSVENLGFYYQA---ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV 64 (253)
T ss_dssp EEEEEEEEEEETT---TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred eEEEeeEEEEeCC---CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 5889999999951 356999999999999999999999999999999999999999999974
No 37
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.60 E-value=9.8e-16 Score=149.89 Aligned_cols=70 Identities=23% Similarity=0.507 Sum_probs=64.7
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..++++|+++.|++ +++++++|+||++++||++||+|||||||||++|+|+|+++|++|+|.++|.++++
T Consensus 338 ~~i~~~~v~~~y~~--~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~ 407 (578)
T 4a82_A 338 GRIDIDHVSFQYND--NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKD 407 (578)
T ss_dssp CCEEEEEEEECSCS--SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGG
T ss_pred CeEEEEEEEEEcCC--CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence 35999999999964 34679999999999999999999999999999999999999999999999999864
No 38
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.59 E-value=1.8e-15 Score=148.31 Aligned_cols=70 Identities=24% Similarity=0.446 Sum_probs=64.9
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..++++|+++.|++ +++++++|+||++++||++||+|||||||||++|+|+|+++|++|+|.++|.|+++
T Consensus 340 ~~i~~~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 340 GSVSFENVEFRYFE--NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT 409 (587)
T ss_dssp CCEEEEEEEECSSS--SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGG
T ss_pred CcEEEEEEEEEcCC--CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEccc
Confidence 36999999999964 34679999999999999999999999999999999999999999999999999864
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.59 E-value=2.1e-15 Score=147.62 Aligned_cols=70 Identities=23% Similarity=0.413 Sum_probs=64.0
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..++++|+++.|++ +++++++|+||++++||++||+|||||||||++|+|+|+++|++|+|.++|.++++
T Consensus 340 ~~i~~~~v~~~y~~--~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~ 409 (582)
T 3b60_A 340 GDLEFRNVTFTYPG--REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE 409 (582)
T ss_dssp CCEEEEEEEECSSS--SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTT
T ss_pred CcEEEEEEEEEcCC--CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccc
Confidence 35999999999963 12579999999999999999999999999999999999999999999999999854
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.58 E-value=2.1e-15 Score=147.62 Aligned_cols=70 Identities=30% Similarity=0.512 Sum_probs=64.1
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..++++|+++.|++ +++++++|+||++++||++||+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus 340 ~~i~~~~v~~~y~~--~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~ 409 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG--KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD 409 (582)
T ss_pred CeEEEEEEEEEcCC--CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhh
Confidence 46999999999963 22579999999999999999999999999999999999999999999999998853
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.57 E-value=2.4e-15 Score=147.55 Aligned_cols=69 Identities=28% Similarity=0.468 Sum_probs=63.2
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
++++|+++.|++. +++++++|+||++++||++||+|||||||||++|+|+|+++|++|+|.++|.++.+
T Consensus 342 i~~~~v~~~y~~~-~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~ 410 (595)
T 2yl4_A 342 LEFKNVHFAYPAR-PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ 410 (595)
T ss_dssp EEEEEEEEECSSC-TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred EEEEEEEEEeCCC-CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhh
Confidence 9999999999642 12569999999999999999999999999999999999999999999999998864
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.57 E-value=2.2e-15 Score=147.91 Aligned_cols=68 Identities=28% Similarity=0.456 Sum_probs=63.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.++++|+++.|++ ++++++|+||++++||++||+|||||||||++|+|+|+++|++|+|.++|.++++
T Consensus 354 ~i~~~~v~~~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~ 421 (598)
T 3qf4_B 354 EIEFKNVWFSYDK---KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRK 421 (598)
T ss_dssp CEEEEEEECCSSS---SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGG
T ss_pred eEEEEEEEEECCC---CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhh
Confidence 5999999999963 4579999999999999999999999999999999999999999999999999864
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.54 E-value=2.8e-15 Score=134.59 Aligned_cols=60 Identities=27% Similarity=0.514 Sum_probs=47.8
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
.+.++|+++.+ +++++|+||+|++||++||+|+|||||||++|+|+|+.+|++|+|.++|
T Consensus 40 ~l~~~~l~~~~------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 99 (290)
T 2bbs_A 40 SLSFSNFSLLG------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99 (290)
T ss_dssp ----------C------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS
T ss_pred eEEEEEEEEcC------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 58899998743 4699999999999999999999999999999999999999999999987
No 44
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.48 E-value=4.2e-16 Score=127.81 Aligned_cols=62 Identities=21% Similarity=0.133 Sum_probs=54.7
Q ss_pred EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
++++|.|+ ++.+++++||.+++||+++|+|+|||||||++|+|+|.. |++|+|.++|.++.+
T Consensus 11 ~~~~~~~g----~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~ 72 (158)
T 1htw_A 11 EFSMLRFG----KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVE 72 (158)
T ss_dssp HHHHHHHH----HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEE
T ss_pred HHHHHHHH----HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeee
Confidence 34455663 357999999999999999999999999999999999999 999999999998853
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.47 E-value=6.7e-14 Score=148.28 Aligned_cols=70 Identities=21% Similarity=0.405 Sum_probs=64.7
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.++.+|++..|+.. ++.++++|+||+|++||++||+|+|||||||++++|.|+++|++|+|.+||.|+++
T Consensus 1076 ~I~f~nVsf~Y~~~-~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~ 1145 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER-PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKT 1145 (1321)
T ss_dssp CEEEEEEEECCTTS-CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTT
T ss_pred eEEEEEEEEeCCCC-CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhh
Confidence 59999999999642 34579999999999999999999999999999999999999999999999999864
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.45 E-value=9.6e-14 Score=146.74 Aligned_cols=70 Identities=23% Similarity=0.397 Sum_probs=64.2
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.++++|+++.|++. ++.++++|+||+|++||++||+|+|||||||++++|.|+++|++|+|.++|.|+++
T Consensus 387 ~i~~~~v~~~y~~~-~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~ 456 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSR-KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456 (1284)
T ss_dssp CEEEEEEEECCSST-TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGG
T ss_pred eEEEEEEEEEcCCC-CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHh
Confidence 59999999999742 23579999999999999999999999999999999999999999999999998864
No 47
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.44 E-value=8e-14 Score=142.24 Aligned_cols=64 Identities=33% Similarity=0.592 Sum_probs=59.1
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
.+.++|+++.|++ +++++++|+||.+++||++||+|+|||||||++|+|+|+.+|++|+|+++|
T Consensus 671 mL~v~nLs~~Y~g--~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 671 IVKVTNMEFQYPG--TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp EEEEEEEEECCTT--CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred eEEEEeeEEEeCC--CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 5889999999953 235799999999999999999999999999999999999999999999986
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.43 E-value=1.1e-13 Score=146.38 Aligned_cols=70 Identities=21% Similarity=0.459 Sum_probs=64.3
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.++++|+++.|++. ++.++++|+||+|++||++||+|+|||||||++++|.|+++|++|+|.++|.++++
T Consensus 1030 ~i~~~~v~~~y~~~-~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~ 1099 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR-PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQ 1099 (1284)
T ss_dssp CEEEEEEEBCCSCG-GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTS
T ss_pred cEEEEEEEEECCCC-CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEccc
Confidence 59999999999742 23579999999999999999999999999999999999999999999999999864
No 49
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.41 E-value=1.1e-13 Score=146.53 Aligned_cols=70 Identities=21% Similarity=0.386 Sum_probs=64.9
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.++++|++..|++. +++++++|+||+|++||.++|+|++||||||+++.|.|+++|++|+|.++|.|+++
T Consensus 415 ~I~~~nvsF~Y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~ 484 (1321)
T 4f4c_A 415 DITVENVHFTYPSR-PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRD 484 (1321)
T ss_dssp CEEEEEEEECCSSS-TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred cEEEEEeeeeCCCC-CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchh
Confidence 59999999999753 35689999999999999999999999999999999999999999999999999864
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.34 E-value=1.1e-12 Score=127.21 Aligned_cols=66 Identities=24% Similarity=0.328 Sum_probs=58.9
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..+.+++++|.|++ ..+++.|++|++||++||+|+|||||||++|+|+|+.+|++|+|.+++..+.
T Consensus 268 ~~l~~~~l~~~~~~-----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~ 333 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD-----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS 333 (538)
T ss_dssp EEEEECCEEEEETT-----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEE
T ss_pred ceEEEcceEEEECC-----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeE
Confidence 36889999999953 4578889999999999999999999999999999999999999998887653
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.32 E-value=3.9e-13 Score=130.36 Aligned_cols=54 Identities=26% Similarity=0.445 Sum_probs=49.2
Q ss_pred EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE
Q psy7219 216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 273 (288)
Q Consensus 216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i 273 (288)
+|++|.|++ ...+++|+| .|++||++||+|+|||||||++|+|+|+.+|++|++
T Consensus 25 ~~ls~~yg~---~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~ 78 (538)
T 1yqt_A 25 EDCVHRYGV---NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD 78 (538)
T ss_dssp CCEEEECST---TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred cCcEEEECC---ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 689999953 225899999 999999999999999999999999999999999995
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.30 E-value=6.1e-13 Score=130.57 Aligned_cols=54 Identities=28% Similarity=0.442 Sum_probs=49.1
Q ss_pred EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE
Q psy7219 216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 273 (288)
Q Consensus 216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i 273 (288)
+|++|.|++ ...+++|+| .+++||++||+|+|||||||++|+|+|+.+|++|++
T Consensus 95 ~~ls~~yg~---~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~ 148 (607)
T 3bk7_A 95 EDCVHRYGV---NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED 148 (607)
T ss_dssp GSEEEECST---TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTT
T ss_pred CCeEEEECC---CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCcc
Confidence 788999953 225899999 999999999999999999999999999999999996
No 53
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.29 E-value=1.3e-12 Score=124.44 Aligned_cols=53 Identities=25% Similarity=0.175 Sum_probs=50.4
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..+++++||++++ |++||+|||||||||++++|+|+.+|++|+|.++|.++.+
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 4599999999999 9999999999999999999999999999999999998864
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.26 E-value=3.9e-12 Score=123.26 Aligned_cols=59 Identities=36% Similarity=0.512 Sum_probs=54.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i 275 (288)
.+.++++++.|++ ..++++||.|++||++||+|+|||||||++|+|+|+.+|++|+|.+
T Consensus 287 ~l~~~~l~~~~~~-----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~ 345 (538)
T 1yqt_A 287 LVTYPRLVKDYGS-----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW 345 (538)
T ss_dssp EEEECCEEEEETT-----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC
T ss_pred EEEEeeEEEEECC-----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 6889999999942 3689999999999999999999999999999999999999999876
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.26 E-value=3.9e-12 Score=124.82 Aligned_cols=59 Identities=36% Similarity=0.508 Sum_probs=54.5
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i 275 (288)
.+.++++++.|++ ..++++||.+++||++||+|+|||||||++|+|+|+.+|++|+|.+
T Consensus 357 ~l~~~~l~~~~~~-----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~ 415 (607)
T 3bk7_A 357 LVEYPRLVKDYGS-----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW 415 (607)
T ss_dssp EEEECCEEEECSS-----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC
T ss_pred EEEEeceEEEecc-----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 6889999999942 3689999999999999999999999999999999999999999976
No 56
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.24 E-value=9e-13 Score=121.07 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=59.2
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~ 279 (288)
..+.+++++|.|.. +..|++++ |.|.+||++||+|+|||||||++++|+|..+|+.|.+.+.|.+
T Consensus 44 ~~i~~~~l~~~~~t---g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 44 DPLLRQVIDQPFIL---GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp CSTTCCCCCSEECC---SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred CCeeecccceecCC---CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 46788999999962 35699999 9999999999999999999999999999999999999998875
No 57
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.23 E-value=2.3e-12 Score=110.67 Aligned_cols=49 Identities=20% Similarity=0.134 Sum_probs=34.1
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+..++|+||.+++||++||+|||||||||++++|+|++ | |++.+ |.++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~ 58 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCT 58 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEE
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eeccc
Confidence 35799999999999999999999999999999999999 6 99999 76653
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.15 E-value=7.6e-12 Score=122.71 Aligned_cols=59 Identities=31% Similarity=0.553 Sum_probs=47.7
Q ss_pred CeEEEEee--------eEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE
Q psy7219 211 DVLVVKRL--------FKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 273 (288)
Q Consensus 211 ~~l~~~~l--------~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i 273 (288)
+++.+.|| ++.|+. ....+++++ .+++||++||+|||||||||++|+|+|+.+|++|++
T Consensus 68 ~~i~i~nl~~~~~~~~~~~Y~~---~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 68 DAIQIINLPTNLEAHVTHRYSA---NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CCEEEEEESSSSSTTEEEECST---TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred cceEEecCChhhcCCeEEEECC---CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 45666555 455532 234677766 689999999999999999999999999999999998
No 59
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.14 E-value=2.7e-12 Score=121.42 Aligned_cols=64 Identities=20% Similarity=0.324 Sum_probs=58.8
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
..+.++++++.|.. +..+++++ |.+.+||++||+|+|||||||++++|+|..+|++|.+.++|.
T Consensus 130 ~~l~~~~v~~~~~t---g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT---GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp CTTTSCCCCSBCCC---SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CceEEeccceecCC---CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 45778899999952 35699999 999999999999999999999999999999999999999998
No 60
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.13 E-value=3.8e-12 Score=119.27 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=47.5
Q ss_pred ccceeeeEEEEeCCC--------------------EEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 229 KPAVNQISFGVGRGE--------------------CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 229 ~~av~~is~~v~~Ge--------------------~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
+.+++++|+.+++|| ++||+|+|||||||++|+|+|+.+|++|+|.++|.++
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~ 107 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV 107 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC---
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeec
Confidence 469999999999999 9999999999999999999999999999999998765
No 61
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.11 E-value=5e-11 Score=118.41 Aligned_cols=65 Identities=23% Similarity=0.330 Sum_probs=41.1
Q ss_pred EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHH---------------------HHHhCCCCCC-----
Q psy7219 216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF---------------------KMLTGAIKPT----- 269 (288)
Q Consensus 216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~---------------------~~l~G~~~pt----- 269 (288)
+++.|.|... ..+.+++|+||+|++||++||+|||||||||++ +++.|+.+|+
T Consensus 19 ~~~~~~~~~~-~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~ 97 (670)
T 3ux8_A 19 SHMDKIIVKG-ARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIE 97 (670)
T ss_dssp ---CEEEEEE-ECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEE
T ss_pred CCcceEEEcC-CCccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCcccee
Confidence 4444444321 235699999999999999999999999999998 8999999999
Q ss_pred --CceEEEcccccc
Q psy7219 270 --SGNAYVMNHSIR 281 (288)
Q Consensus 270 --~G~i~i~g~~i~ 281 (288)
.|.+.++|.+..
T Consensus 98 ~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 98 GLSPAISIDQKTTS 111 (670)
T ss_dssp SCCCEEEESSCC--
T ss_pred ccccceEecCchhh
Confidence 455666665543
No 62
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.10 E-value=1.2e-11 Score=111.53 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=48.0
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+++++||.+++||+++++|+||||||||+++|+|.++|++|+|.++|.|+.+
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 4567899999999999999999999999999999999999999999998753
No 63
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.09 E-value=2.7e-12 Score=109.69 Aligned_cols=42 Identities=24% Similarity=0.094 Sum_probs=39.0
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEE
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~ 274 (288)
++.+++|+ ++||++||+|||||||||++|+|+|+ +|++|+|.
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~ 53 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS 53 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee
Confidence 35789995 89999999999999999999999999 99999994
No 64
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.09 E-value=1.1e-10 Score=119.21 Aligned_cols=51 Identities=25% Similarity=0.460 Sum_probs=45.9
Q ss_pred CCeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 210 ~~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
+..+...+++|.|+ ++.+++|+||.+++||++||+|+|||||||++|+|+|
T Consensus 433 ~~~L~~~~ls~~yg----~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 433 GEDLCNCEFSLAYG----AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp SCEEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cceeEEeeEEEEEC----CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34677889999995 3579999999999999999999999999999999994
No 65
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.07 E-value=1.1e-11 Score=119.84 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=50.6
Q ss_pred cccceeeeEE-EEeCCCEEEEEcCCCCChHHHHHH--HhCCCCCCCceEEEcccccc
Q psy7219 228 TKPAVNQISF-GVGRGECFGLLGLNGAGKTTTFKM--LTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 228 ~~~av~~is~-~v~~Ge~~gllG~NGaGKTT~~~~--l~G~~~pt~G~i~i~g~~i~ 281 (288)
+.++++++++ ++++||+++|+|+|||||||++++ ++|..+|++|.++++|.+..
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~ 80 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP 80 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCH
Confidence 4679999999 999999999999999999999999 78999999999999998853
No 66
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.07 E-value=2.1e-12 Score=116.36 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=50.9
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
+.++++++.|+ +++++++||+|++||+++|+|||||||||++++|+|++ +|+|...+
T Consensus 102 i~~~~vs~~y~-----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v 158 (305)
T 2v9p_A 102 FNYQNIELITF-----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFA 158 (305)
T ss_dssp HHHTTCCHHHH-----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGG
T ss_pred EEEEEEEEEcC-----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEe
Confidence 56678888884 46999999999999999999999999999999999999 89997654
No 67
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.05 E-value=3e-12 Score=115.64 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=58.1
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEE-------------------eCCCEEEEEcCCCCChHHHHHHHhCCCC--CC
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGV-------------------GRGECFGLLGLNGAGKTTTFKMLTGAIK--PT 269 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v-------------------~~Ge~~gllG~NGaGKTT~~~~l~G~~~--pt 269 (288)
+.+.+++++|.|. ++++++++.+ ++|+++||+|+|||||||++++|+|+.+ |+
T Consensus 36 ~~i~~~~v~~~y~------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 36 EDLSLEEVAEIYL------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp TTCCHHHHHHTHH------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred cccchHhHHHHHH------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 4588899999993 4889999988 9999999999999999999999999988 99
Q ss_pred CceEEE---ccccc
Q psy7219 270 SGNAYV---MNHSI 280 (288)
Q Consensus 270 ~G~i~i---~g~~i 280 (288)
+|++.+ +|...
T Consensus 110 ~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 110 HRRVELITTDGFLH 123 (308)
T ss_dssp CCCEEEEEGGGGBC
T ss_pred CCeEEEEecCCccC
Confidence 999999 88765
No 68
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.04 E-value=1.9e-11 Score=111.51 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=47.4
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~ 279 (288)
+++++++.+++||+++++|+|||||||++++|+|+++|++|.+.++|.+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence 7899999999999999999999999999999999999999999999875
No 69
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.04 E-value=1.8e-11 Score=108.16 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=46.9
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-CceEEEcccccc
Q psy7219 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIR 281 (288)
Q Consensus 230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-~G~i~i~g~~i~ 281 (288)
++++++| +++||+++|+|||||||||++++|.|+++|+ +|+|.++|.++.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE 65 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce
Confidence 4899999 9999999999999999999999999999998 999999998764
No 70
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.03 E-value=2.6e-12 Score=117.53 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=58.7
Q ss_pred EEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
++++++++.|. .+.+++++|+.+++|+++||+|+|||||||++++|+|..+|++|++.+.|.++.+
T Consensus 30 ie~~~~~~~~~----~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 30 AESRRADHRAA----VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp HTCSSHHHHHH----HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred HeeCCcccccC----hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 55667777774 2569999999999999999999999999999999999999999999999988754
No 71
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.00 E-value=1.5e-10 Score=113.43 Aligned_cols=54 Identities=35% Similarity=0.552 Sum_probs=47.2
Q ss_pred EeeeEEeccccccccceeeeEEEEeCC-----CEEEEEcCCCCChHHHHHHHhCCCCCCCce
Q psy7219 216 KRLFKIYANSKDTKPAVNQISFGVGRG-----ECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272 (288)
Q Consensus 216 ~~l~k~y~~~~~~~~av~~is~~v~~G-----e~~gllG~NGaGKTT~~~~l~G~~~pt~G~ 272 (288)
+++...|++ ...+++++||++.+| |++||+|+|||||||++|+|+|+.+|++|+
T Consensus 350 ~~~~~~y~~---~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 350 ASRAFSYPS---LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp SSSCCEECC---EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred cceeEEecC---cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 456667753 245899999999999 889999999999999999999999999997
No 72
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.00 E-value=5.8e-11 Score=109.54 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=45.3
Q ss_pred eeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 232 v~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
++++|+.|++||.++|+|+|||||||++++|.|+++|++|.|.++|.
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~ 211 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc
Confidence 49999999999999999999999999999999999999999999975
No 73
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.00 E-value=5.1e-11 Score=109.73 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=46.7
Q ss_pred eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 233 ~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+.+||.+++||+++++|+||||||||++.|+|.++|++|+|.++|.|+.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 46888999999999999999999999999999999999999999998753
No 74
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.98 E-value=1.3e-10 Score=112.51 Aligned_cols=50 Identities=32% Similarity=0.527 Sum_probs=41.2
Q ss_pred eeeeEEEE-eCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE-----------EEcccccc
Q psy7219 232 VNQISFGV-GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA-----------YVMNHSIR 281 (288)
Q Consensus 232 v~~is~~v-~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i-----------~i~g~~i~ 281 (288)
++--.+-+ ++||++||+|||||||||++|+|+|+++|++|++ .++|.++.
T Consensus 14 f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~ 75 (538)
T 3ozx_A 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIY 75 (538)
T ss_dssp CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTH
T ss_pred eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHH
Confidence 33334444 4999999999999999999999999999999998 56776653
No 75
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.98 E-value=1.6e-10 Score=99.51 Aligned_cols=44 Identities=23% Similarity=0.147 Sum_probs=27.8
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh-CCC------------CCCCceE
Q psy7219 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT-GAI------------KPTSGNA 273 (288)
Q Consensus 230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~-G~~------------~pt~G~i 273 (288)
.-.+++||.+++|+++||+|||||||||++++|+ |.. +|+.|++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~ 71 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK 71 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc
Confidence 3578899999999999999999999999999999 998 7777765
No 76
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.95 E-value=1.8e-10 Score=97.68 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=26.4
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
..+.++| ..|++||++||+|||||||||++|+|+|+.+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4567888 7999999999999999999999999999986
No 77
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.94 E-value=5.7e-11 Score=112.93 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=50.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc-e-EEEcc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-N-AYVMN 277 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G-~-i~i~g 277 (288)
.+.++|++|.|+ ++||.+++||+++|+|+|||||||++|+|+|+.+|++| + ++++|
T Consensus 118 mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 118 MKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp HHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred hhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 456777777762 69999999999999999999999999999999999999 9 99988
No 78
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.93 E-value=1.4e-10 Score=110.40 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=46.8
Q ss_pred eeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 232 v~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
-+++||.+++|++++|+|+||||||||+++|+|.++|++|+|.++|.++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 332 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence 46899999999999999999999999999999999999999999887764
No 79
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.90 E-value=3.5e-10 Score=98.42 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=26.0
Q ss_pred ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 227 ~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+++.+++|+||++++|+++||+|+|||||||++++|+|..
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999999999999999999999999999999965
No 80
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.89 E-value=2.5e-11 Score=109.93 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=48.0
Q ss_pred CCCeEEEEeeeEEeccccccccceeeeEEE-----------------------EeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 209 SGDVLVVKRLFKIYANSKDTKPAVNQISFG-----------------------VGRGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 209 ~~~~l~~~~l~k~y~~~~~~~~av~~is~~-----------------------v~~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++.+.+++|+|.|. ++++++++. +++|+++||+|+|||||||++++|+|+
T Consensus 40 ~~~~i~~~~v~~~y~------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp TTCCCCHHHHHHTHH------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 355788999999994 355555443 899999999999999999999999999
Q ss_pred CCCCCc
Q psy7219 266 IKPTSG 271 (288)
Q Consensus 266 ~~pt~G 271 (288)
.+|++|
T Consensus 114 l~~~~G 119 (312)
T 3aez_A 114 LARWDH 119 (312)
T ss_dssp HHTSTT
T ss_pred ccccCC
Confidence 999877
No 81
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.85 E-value=3.8e-10 Score=94.93 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=37.0
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC-----CCCCceEEE
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-----KPTSGNAYV 275 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~-----~pt~G~i~i 275 (288)
.+.++++++.|+ .+++++ |.+++|++++|+|+|||||||+++.|+|.. .|+.|+...
T Consensus 3 ~l~~~~~~~~~~-----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMS-----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp --------CEEE-----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred chhhhhhhheee-----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 367899999994 257888 889999999999999999999999999998 899998765
No 82
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.81 E-value=5.9e-10 Score=107.24 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=47.5
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~ 279 (288)
.+++++++.+++|+.++++|+||||||||+++|+|+.+|++|.+.+.|.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 47899999999999999999999999999999999999999999998865
No 83
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.81 E-value=8.9e-11 Score=101.51 Aligned_cols=57 Identities=26% Similarity=0.280 Sum_probs=42.2
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
.+.++|+.+.|. . ++++.+ |+++|+|||||||||++++|+|...|++|+|.++|.++
T Consensus 9 ~l~l~~~~~~~~----~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFA----R-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEE----E-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEEeeecccC----C-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 467888766552 1 456666 99999999999999999999999999999999999887
No 84
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.80 E-value=2e-09 Score=106.91 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=43.7
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh----------------------CCCCCCCceEEEccccccc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT----------------------GAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~----------------------G~~~pt~G~i~i~g~~i~~ 282 (288)
..+++|+||+|++||++||+|||||||||+++++. |...+ +|.+.++|.++..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~ 409 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGR 409 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCS
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCC
Confidence 46999999999999999999999999999998753 44433 4578888877643
No 85
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.80 E-value=1e-09 Score=98.66 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=33.2
Q ss_pred EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE---ccccccch
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIRDS 283 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i---~g~~i~~~ 283 (288)
|.+.+||+++++|+|||||||++++|+|+.+|++|++.+ +|.++.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~ 213 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTT 213 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceee
Confidence 456689999999999999999999999999999999999 88887543
No 86
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.80 E-value=1.1e-09 Score=94.11 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=37.4
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhCCCCC--CCceEEEcccccc
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIR 281 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p--t~G~i~i~g~~i~ 281 (288)
..++|++++|+|||||||||++++|+|..+| .+|++.+.+.+.+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~ 57 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPR 57 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCC
Confidence 4689999999999999999999999999986 6899998887654
No 87
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.80 E-value=1.4e-09 Score=97.91 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=39.5
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+||+++++|||||||||++++|+|.++|++|++.+.|.|+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 79999999999999999999999999999999999999874
No 88
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.79 E-value=1.2e-09 Score=94.39 Aligned_cols=52 Identities=25% Similarity=0.285 Sum_probs=42.0
Q ss_pred cceeeeEE-EEeCCCEEEEEcCCCCChHHHHHHHh--CCCCCCCceEEEcccccc
Q psy7219 230 PAVNQISF-GVGRGECFGLLGLNGAGKTTTFKMLT--GAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 230 ~av~~is~-~v~~Ge~~gllG~NGaGKTT~~~~l~--G~~~pt~G~i~i~g~~i~ 281 (288)
+.++++-- +|++||+++|+|||||||||++++|+ |..++.+|.+++++.+..
T Consensus 17 ~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~ 71 (251)
T 2ehv_A 17 PGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERA 71 (251)
T ss_dssp TTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH
T ss_pred HhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCH
Confidence 34554411 89999999999999999999999999 765777888888876543
No 89
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.78 E-value=1.8e-09 Score=97.03 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=22.6
Q ss_pred EeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC-CCCCCceEEEcccccc
Q psy7219 216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA-IKPTSGNAYVMNHSIR 281 (288)
Q Consensus 216 ~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~-~~pt~G~i~i~g~~i~ 281 (288)
++|+|.|+ ++.++++++|+| +|+|+|||||||++++|.|. ..|++| +.++|.++.
T Consensus 2 ~~l~~~~~----~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~ 57 (301)
T 2qnr_A 2 SNLPNQVH----RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIE 57 (301)
T ss_dssp --------------------CEEE------EEEEETTSSHHHHHHHHHC------------------
T ss_pred CCCcceEC----CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccC
Confidence 46888885 467999999998 99999999999999999998 889999 777666543
No 90
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.75 E-value=1.6e-09 Score=98.64 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=40.7
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.++|++++++|+||||||||+++|+|.++|++|++.+.|.|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 4689999999999999999999999999999999999999874
No 91
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.75 E-value=3.4e-09 Score=90.30 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=37.0
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-------CCceEEEccccc
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-------TSGNAYVMNHSI 280 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-------t~G~i~i~g~~i 280 (288)
++++||+++|+|||||||||++++|+|...+ ..|.+++++.+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 7999999999999999999999999996555 445888888763
No 92
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.74 E-value=9.9e-10 Score=98.05 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=45.4
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc-eEEEcccc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHS 279 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G-~i~i~g~~ 279 (288)
.++++++++++++||+++|+|+|||||||++++|+|...|++| .+.+.+.+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 5699999999999999999999999999999999999999988 67554333
No 93
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.72 E-value=2.3e-09 Score=99.96 Aligned_cols=53 Identities=21% Similarity=0.324 Sum_probs=45.8
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC--------------------------------------CCC
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--------------------------------------PTS 270 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~--------------------------------------pt~ 270 (288)
..++++++|.+.+| +.+|+|+|||||||++++|.++.. +.+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35899999999999 999999999999999999955543 557
Q ss_pred ceEEEccccccc
Q psy7219 271 GNAYVMNHSIRD 282 (288)
Q Consensus 271 G~i~i~g~~i~~ 282 (288)
|+++++|.+++.
T Consensus 127 ~~i~ing~~~~~ 138 (415)
T 4aby_A 127 GAARLSGEVVSV 138 (415)
T ss_dssp EEEEETTEEECH
T ss_pred eEEEECCEECCH
Confidence 889999998753
No 94
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.71 E-value=5.6e-10 Score=104.81 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=45.3
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..+++++ + .++|++++++||||||||||+++|.|+.+|++|+|.+.|.++.
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE 206 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch
Confidence 3467777 4 3899999999999999999999999999999999999988774
No 95
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.68 E-value=1.8e-09 Score=101.24 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=39.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCE--EEEEcCCCCChHHHHHHHhCCC
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~--~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.+.+++ ++.|+ +.+ ++++||.+++|++ +||+|+|||||||++++|+|..
T Consensus 16 ~l~~~~-~~~y~----~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 16 TVPLAG-HVGFD----SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCCCC-CC-CC------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEee-EEEEC----Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 455566 77784 345 9999999999999 9999999999999999999984
No 96
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.66 E-value=1.8e-09 Score=97.28 Aligned_cols=47 Identities=9% Similarity=0.101 Sum_probs=27.5
Q ss_pred EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE---ccccccch
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIRDS 283 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i---~g~~i~~~ 283 (288)
+.+.+||+++++|+||+||||++|+|+|..+|++|++.+ +|.++++.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~ 217 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRH 217 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccH
Confidence 446789999999999999999999999999999999998 88776543
No 97
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.66 E-value=4.6e-09 Score=89.00 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=38.6
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCCCC---CCceEEEcccccc
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKP---TSGNAYVMNHSIR 281 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p---t~G~i~i~g~~i~ 281 (288)
.++||++||+|+|||||||++++|+|.++| +.|.+.++|+.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~ 64 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD 64 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence 468999999999999999999999999985 5789999988764
No 98
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.66 E-value=1.7e-08 Score=102.02 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=39.2
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHH-HhC
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKM-LTG 264 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~-l~G 264 (288)
..+.++++++ .+++|+||+|++||++||+|+||||||||+++ |.|
T Consensus 501 ~~L~v~~l~~---------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 501 GWLELNGVTR---------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp CEEEEEEEEE---------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred ceEEEEeeee---------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence 3588888753 27999999999999999999999999999997 663
No 99
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.65 E-value=1e-08 Score=92.18 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=35.4
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE---ccccccch
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIRDS 283 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i---~g~~i~~~ 283 (288)
.+.+|++.+++|+|||||||++|+|+ ..+|++|+|.+ +|.++.+.
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~ 208 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTG 208 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceee
Confidence 45679999999999999999999999 99999999999 88887654
No 100
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.63 E-value=1.7e-09 Score=99.71 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=42.6
Q ss_pred ceeeeEEEEeC--CCEEEEEcCCCCChHHHHHHHhCCCCCCC----ceEEEc
Q psy7219 231 AVNQISFGVGR--GECFGLLGLNGAGKTTTFKMLTGAIKPTS----GNAYVM 276 (288)
Q Consensus 231 av~~is~~v~~--Ge~~gllG~NGaGKTT~~~~l~G~~~pt~----G~i~i~ 276 (288)
..+.+++.|++ ||.++|+|+|||||||++|+|+|+++|++ |+++++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF 208 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 35679999999 99999999999999999999999999999 998874
No 101
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.61 E-value=2.4e-09 Score=105.22 Aligned_cols=64 Identities=19% Similarity=0.385 Sum_probs=36.6
Q ss_pred eEEEEeeeEEeccccccccceeee----------EEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC-CCceEEEccccc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQI----------SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSI 280 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~i----------s~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p-t~G~i~i~g~~i 280 (288)
.+.++++++.|+.+ .++.++.+ +++++. +||+|+|||||||++++|+|+..| ++|.+.++|.++
T Consensus 10 ~i~~~~l~~~~~~~--~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 10 SVAENNLCSQYEEK--VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL 84 (608)
T ss_dssp ----------CHHH--HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred hhhhhhhhHHHHHH--HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence 46677888888531 12233322 356654 999999999999999999999988 799999999886
No 102
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.58 E-value=2.2e-09 Score=90.38 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=46.9
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE--EEccccccc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA--YVMNHSIRD 282 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i--~i~g~~i~~ 282 (288)
..+.++.++..++|++++|+|+|||||||+.++|++... .+|.+ +++|.++..
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH 66 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh
Confidence 457788888889999999999999999999999999988 78988 999887754
No 103
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.58 E-value=2.8e-08 Score=91.24 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=35.9
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-CCCceEEEc-cccc
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAYVM-NHSI 280 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-pt~G~i~i~-g~~i 280 (288)
-++++++. .+||+++|+|+|||||||++++|+|..+ |++|+|.++ |.+.
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~ 255 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQ 255 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----------
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCc
Confidence 46666664 4899999999999999999999999999 999999986 6543
No 104
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.57 E-value=2.5e-08 Score=93.51 Aligned_cols=51 Identities=18% Similarity=0.110 Sum_probs=40.2
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G 271 (288)
..+.++++++.|+ ++.+++|++|+| +|+|+|||||||++++|+|...|+.|
T Consensus 10 ~~l~~~~l~~~y~----~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 10 GYVGFANLPNQVY----RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp -----CCCCCCTT----TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred CcEEEEecceeEC----CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 3588999999995 367999999998 99999999999999999999886554
No 105
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.56 E-value=5.1e-09 Score=89.06 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=46.9
Q ss_pred cccceeeeEE-EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 228 TKPAVNQISF-GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 228 ~~~av~~is~-~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
+.++++++.. ++++||+++|+|+|||||||+++.+++...+++|.+.+.+.+.
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 3568999998 8999999999999999999999999999888888888766554
No 106
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.56 E-value=5.7e-09 Score=96.60 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=42.4
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-CceEEEccccc
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSI 280 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-~G~i~i~g~~i 280 (288)
++++++ +++|++++++|||||||||+++.|.|+++|+ +|+|...|.++
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 175 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSC
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccH
Confidence 566665 8899999999999999999999999999998 89998776654
No 107
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.55 E-value=4e-09 Score=92.39 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=35.7
Q ss_pred CeEEEEee-eEEeccccccccceeeeEEEEeC---CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 211 DVLVVKRL-FKIYANSKDTKPAVNQISFGVGR---GECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 211 ~~l~~~~l-~k~y~~~~~~~~av~~is~~v~~---Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
..+.++|+ +|.|. +++.+++|+||.|++ |++++|+|++||||||+.++|++..
T Consensus 16 ~~l~~~~~~~~~~~---~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFD---EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEec---CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36889999 99993 235799999999999 9999999999999999999998744
No 108
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.45 E-value=6.3e-08 Score=81.31 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=35.0
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
.+-+....-++|++++|+|+|||||||+.++|+|.. |.+.++|.++..
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~ 65 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS 65 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc
Confidence 333344566799999999999999999999999987 999999988753
No 109
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.43 E-value=1.2e-07 Score=98.05 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=41.7
Q ss_pred CeEEEEe-----eeEEeccccccccceeeeEEEEeC-------CCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 211 DVLVVKR-----LFKIYANSKDTKPAVNQISFGVGR-------GECFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 211 ~~l~~~~-----l~k~y~~~~~~~~av~~is~~v~~-------Ge~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
..+.+++ +.+.|.+ ++.+++|++|++++ |++++|+|||||||||++|++ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~---~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG---DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV 814 (1022)
T ss_dssp CCEEEEEECCCC------C---CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred ceEEEEeccccEEEEEecC---CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH
Confidence 3588999 8888842 35799999999987 999999999999999999999 87643
No 110
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.43 E-value=1.3e-07 Score=96.33 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=37.9
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
..+.++++++ .+++|+||+|++||++||+|+||||||||++++.
T Consensus 628 ~~L~v~~l~~---------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 628 RWLEVVGARE---------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CEEEEEEECS---------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEEecCcc---------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3577777642 3799999999999999999999999999999853
No 111
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.43 E-value=2.7e-08 Score=86.34 Aligned_cols=39 Identities=26% Similarity=0.240 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHh---CCCCCCCceEEEcccc
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAYVMNHS 279 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~---G~~~pt~G~i~i~g~~ 279 (288)
++++++|+|+|||||||++++|+ |...|++|++.++|.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence 47999999999999999999999 9999999999887653
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.42 E-value=3.2e-08 Score=90.96 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=42.0
Q ss_pred ccceeeeEE-------EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCC-CceEEEccccc
Q psy7219 229 KPAVNQISF-------GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSI 280 (288)
Q Consensus 229 ~~av~~is~-------~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt-~G~i~i~g~~i 280 (288)
.+.++++.+ .+.+|++++++||||||||||+++|.|..+|+ +|.+...+.++
T Consensus 103 ~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~ 162 (356)
T 3jvv_A 103 VLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI 162 (356)
T ss_dssp CCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred CCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH
Confidence 356666665 67899999999999999999999999999998 56766554443
No 113
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.41 E-value=2.8e-07 Score=94.13 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=38.1
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
..+.++++++ .+++|+||+|++||++||+|+||||||||+++|.
T Consensus 646 ~~L~v~~l~~---------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 646 RQLTVVGARE---------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEEECS---------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ceEEEecCcc---------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4577887742 3799999999999999999999999999999853
No 114
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.40 E-value=1.4e-07 Score=77.60 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=36.5
Q ss_pred ce--eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce
Q psy7219 231 AV--NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272 (288)
Q Consensus 231 av--~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~ 272 (288)
.+ +++++.+.+| +.+|+|+|||||||+++.|.+...+++|.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 55 7889999999 99999999999999999999988777664
No 115
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.38 E-value=4.1e-08 Score=86.99 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=44.5
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..+++++++.+++| ++|.||||+||||++|+|+|+..+ |.+.++|.++.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~ 81 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELL 81 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTC
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHH
Confidence 35889999999999 999999999999999999999887 79999998874
No 116
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.37 E-value=1.7e-07 Score=87.10 Aligned_cols=41 Identities=27% Similarity=0.467 Sum_probs=37.1
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhC------------CCCCCCceEEEccc
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTG------------AIKPTSGNAYVMNH 278 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G------------~~~pt~G~i~i~g~ 278 (288)
.+++|+.+||+|+|||||||++++|+| ...|++|.+.+.|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence 457899999999999999999999999 66799999999874
No 117
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.36 E-value=4.7e-08 Score=85.43 Aligned_cols=42 Identities=29% Similarity=0.251 Sum_probs=39.3
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHh---CCCCCCCceEE--------Ecccccc
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAY--------VMNHSIR 281 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~---G~~~pt~G~i~--------i~g~~i~ 281 (288)
++|++++|+|+|||||||+.++|+ |...+++|.++ .+|.++.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~ 77 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDIS 77 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcc
Confidence 789999999999999999999999 99999999999 8887774
No 118
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.36 E-value=1.1e-07 Score=76.63 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=39.1
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc--eEEEcccccc
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHSIR 281 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G--~i~i~g~~i~ 281 (288)
+++++ +|+.++|.|+||+||||+++++.|..++ +| .+++++.++.
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMP 76 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSC
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhh
Confidence 56666 8999999999999999999999999887 58 8888887654
No 119
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.35 E-value=1.8e-07 Score=95.72 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=46.8
Q ss_pred eEEEEeeeEEeccc-cccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHH--------hCCCCCCCc
Q psy7219 212 VLVVKRLFKIYANS-KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML--------TGAIKPTSG 271 (288)
Q Consensus 212 ~l~~~~l~k~y~~~-~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l--------~G~~~pt~G 271 (288)
.+.+++.+..+-.. .+++.+.+|++|++++||+++|+|||||||||++|++ .|.+.|.++
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~ 699 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES 699 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence 46666665544211 1235689999999999999999999999999999999 888877664
No 120
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.34 E-value=2.8e-07 Score=78.95 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=37.7
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhC--CCCC-----CCceEEEcccc
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTG--AIKP-----TSGNAYVMNHS 279 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G--~~~p-----t~G~i~i~g~~ 279 (288)
++++||+++|+|+|||||||+++.+++ ..+| +.|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 689999999999999999999999999 5555 67899998876
No 121
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.33 E-value=2.1e-07 Score=87.17 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=40.8
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC-----------CCCCCceEEEcc
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA-----------IKPTSGNAYVMN 277 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~-----------~~pt~G~i~i~g 277 (288)
--++++|.+++|+.+||+|+|||||||++++|+|. ..|+.|.+.+++
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~ 203 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE 203 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC
Confidence 35799999999999999999999999999999998 456667776654
No 122
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.32 E-value=2e-07 Score=80.08 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=35.9
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..++|++++|.|+|||||||++++|.|. .|++.+.+.+..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~ 55 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVE 55 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHH
Confidence 4468999999999999999999999998 789999888764
No 123
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.31 E-value=1.6e-07 Score=95.78 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=40.2
Q ss_pred eEEEEeeeEEecc---ccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 212 VLVVKRLFKIYAN---SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 212 ~l~~~~l~k~y~~---~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
.+.+++.+.-.-. ..+++.+.+|++|++++||+++|+|||||||||++|++.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHH
Confidence 4556655443210 112467999999999999999999999999999999986
No 124
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.31 E-value=9.4e-08 Score=87.60 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=44.5
Q ss_pred cceeee-EEEEeCCCEEEEEcCCCCChHHHHHHHhCCC--CCCC----ce-EEEccccc
Q psy7219 230 PAVNQI-SFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTS----GN-AYVMNHSI 280 (288)
Q Consensus 230 ~av~~i-s~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~--~pt~----G~-i~i~g~~i 280 (288)
+.+|++ ..++++|++++|.|+|||||||+++.++|.. +|++ |+ +++++.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 466666 6899999999999999999999999999998 6776 67 89998764
No 125
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.31 E-value=1.2e-07 Score=95.09 Aligned_cols=59 Identities=20% Similarity=0.138 Sum_probs=44.9
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC-CCCceE
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNA 273 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-pt~G~i 273 (288)
..+.+++.+.-.-.. +++.+++|+||+ ||+++|+|||||||||++|+++|... ++.|.+
T Consensus 549 ~~i~i~~~rHP~le~-~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~ 608 (765)
T 1ewq_A 549 DRLQIRAGRHPVVER-RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF 608 (765)
T ss_dssp SSEEEEEECCTTGGG-TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred CcEEEEEeECceEcc-CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence 346666664322110 235789999999 99999999999999999999999874 677754
No 126
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.29 E-value=3.1e-07 Score=92.63 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=40.9
Q ss_pred eEEEEeeeEEeccc-cccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 212 VLVVKRLFKIYANS-KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 212 ~l~~~~l~k~y~~~-~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.+.+++.+.-.-.. .+++.+++|++|+ ++|++++|+|||||||||++|+++|..
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 46666554322100 0235689999999 999999999999999999999999863
No 127
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.29 E-value=6.7e-07 Score=91.18 Aligned_cols=43 Identities=19% Similarity=0.368 Sum_probs=35.7
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHH---------HHHhCCCCCCCc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTF---------KMLTGAIKPTSG 271 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~---------~~l~G~~~pt~G 271 (288)
..+++|+||+|++||++||+|+|||||||++ +.+.|...+..+
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~ 648 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGE 648 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccc
Confidence 3589999999999999999999999999997 556555555443
No 128
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.29 E-value=1e-07 Score=86.41 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=46.2
Q ss_pred eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 233 ~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
++++|.+++|++++++|+||+||||+...|++.+.+..|++.+.+.|+..
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 67889999999999999999999999999999999999999998888743
No 129
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.28 E-value=1.5e-07 Score=79.11 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=37.7
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
.++|+++||.|+|||||||+.++|.+..++.+|++.+.+.|.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 568899999999999999999999999998899998876654
No 130
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=4.4e-07 Score=76.04 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=24.6
Q ss_pred ccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 227 ~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+...+++|+||.+++|+++.|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3457999999999999999999999999999999998754
No 131
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.22 E-value=1.1e-06 Score=80.69 Aligned_cols=48 Identities=27% Similarity=0.337 Sum_probs=39.7
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC-------------CCCCCCceEEEcc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG-------------AIKPTSGNAYVMN 277 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G-------------~~~pt~G~i~i~g 277 (288)
...++++++.+.+| +.+|+|+||+||||++++|.+ +....++.+.+.+
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~~~g~~R~~~~~~lI~~g~~~~~V~~ 74 (359)
T 2o5v_A 14 YRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLALTGQTDAPRIEQLIQAGETEAYVRA 74 (359)
T ss_dssp BTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHSCCCCSSGGGGBCTTCSCEEEEE
T ss_pred ccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHhccCCCCCCCHHHHhccCCCcEEEEE
Confidence 34678999999999 999999999999999999997 5555556565544
No 132
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.21 E-value=8e-09 Score=93.99 Aligned_cols=63 Identities=22% Similarity=0.291 Sum_probs=49.4
Q ss_pred EEeeeEEeccccccccceeeeEEEEeCC-------CEEEEEcCCCCChHHHHHHHhCCC----CCCCceEEEcccccc
Q psy7219 215 VKRLFKIYANSKDTKPAVNQISFGVGRG-------ECFGLLGLNGAGKTTTFKMLTGAI----KPTSGNAYVMNHSIR 281 (288)
Q Consensus 215 ~~~l~k~y~~~~~~~~av~~is~~v~~G-------e~~gllG~NGaGKTT~~~~l~G~~----~pt~G~i~i~g~~i~ 281 (288)
.+++.+.|+ +..+++++++.+++| +.++|.||||+||||++++++|.. .+++|.+..++.++.
T Consensus 21 ~~~l~~~~g----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~ 94 (334)
T 1in4_A 21 PKSLDEFIG----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94 (334)
T ss_dssp CSSGGGCCS----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH
T ss_pred CccHHHccC----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH
Confidence 344555553 245788888888876 899999999999999999999998 778888877666543
No 133
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.19 E-value=2.5e-07 Score=83.30 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=42.0
Q ss_pred eEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
+++..++|++++++|+||+||||+.+.|++.++++.|++.+.+.|..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 45556789999999999999999999999999999999999887764
No 134
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.18 E-value=6.9e-07 Score=74.13 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=32.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCC-----------CCceEEEcccccc
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIKP-----------TSGNAYVMNHSIR 281 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~p-----------t~G~i~i~g~~i~ 281 (288)
.++++|+|||||||+++.++|...+ ++|++.++|.++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 79 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence 6789999999999999999998775 5788999987653
No 135
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.17 E-value=2.2e-07 Score=90.06 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=40.0
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc-eEE-Eccccccc
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAY-VMNHSIRD 282 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G-~i~-i~g~~i~~ 282 (288)
.+++|++++|+|+|||||||+.++|+|...|++| ++. ++|.++.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 4789999999999999999999999999999997 774 88877643
No 136
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.17 E-value=3.2e-07 Score=82.12 Aligned_cols=48 Identities=23% Similarity=0.230 Sum_probs=44.3
Q ss_pred eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 233 ~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+++++. +|++++++|+||+||||+.+.|+|...+..|++.+.+.|.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 678887 999999999999999999999999999999999999888754
No 137
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.15 E-value=1.4e-07 Score=77.72 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=31.9
Q ss_pred EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~ 272 (288)
+.+++|+.++|.||||+||||+++.+++...|++|.
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 445679999999999999999999999999877773
No 138
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.12 E-value=1.1e-06 Score=73.94 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=33.2
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCCC-------------CCCceEEEccccc
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIK-------------PTSGNAYVMNHSI 280 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~-------------pt~G~i~i~g~~i 280 (288)
..+|+.++|+|||||||||+++.|.+..+ |..|+ ++|.+.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y 68 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEY 68 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccc
Confidence 34899999999999999999999998876 66676 566553
No 139
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.10 E-value=3.5e-07 Score=84.60 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=39.5
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i 275 (288)
..+++++++++++|++++|.||||+||||++++|+|. .+|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence 3589999999999999999999999999999999985 4677665
No 140
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.10 E-value=3.6e-07 Score=79.33 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=43.3
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..+++++++.+++| +.|.||||+||||+++++++... .|.+.++|.++.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~ 86 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV 86 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHH
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHH
Confidence 35789999999999 89999999999999999999886 789999887653
No 141
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.09 E-value=2.1e-06 Score=77.47 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=27.4
Q ss_pred eeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 234 QISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 234 ~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
++++.+.+| +.+|+|+|||||||+++.|..
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHH
Confidence 578888899 999999999999999999983
No 142
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.08 E-value=2.7e-07 Score=83.52 Aligned_cols=47 Identities=23% Similarity=0.368 Sum_probs=39.2
Q ss_pred ccceeeeEEEEeCCC------EEEEEcCCCCChHHHHHHHhCCCC--CCCceEEE
Q psy7219 229 KPAVNQISFGVGRGE------CFGLLGLNGAGKTTTFKMLTGAIK--PTSGNAYV 275 (288)
Q Consensus 229 ~~av~~is~~v~~Ge------~~gllG~NGaGKTT~~~~l~G~~~--pt~G~i~i 275 (288)
+.++++++..+.+++ ++||.|+|||||||++++|.++.. |++|++.+
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 457777777777776 999999999999999999999987 56777544
No 143
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.07 E-value=4.4e-07 Score=80.02 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=43.6
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
..+++++++.+++| +.|.||||+||||++++|++... .|.+.+++.++.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~ 110 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV 110 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHH
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHH
Confidence 35889999999999 89999999999999999999886 799999987653
No 144
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.07 E-value=2.4e-06 Score=78.63 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=31.1
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
...++++++++++| .++|+|||||||||++++|+
T Consensus 11 f~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 11 FLGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp ETTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccCccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34778899999999 89999999999999999998
No 145
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.06 E-value=5.8e-07 Score=75.75 Aligned_cols=49 Identities=20% Similarity=0.139 Sum_probs=41.0
Q ss_pred ccceeeeEE-EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219 229 KPAVNQISF-GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 229 ~~av~~is~-~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~ 279 (288)
.+.+|++.. ++++|++++|.|+||+||||+.+.+++ ++..+.++++..+
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG 55 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC
Confidence 457778776 799999999999999999999999999 5555677777654
No 146
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.04 E-value=3.7e-07 Score=83.30 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=45.2
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
..+++++++.+.+|++++++|+|||||||+++.|+|...+..|++.+-+.+.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 4588899999999999999999999999999999999888888777655544
No 147
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.02 E-value=1.3e-06 Score=78.22 Aligned_cols=41 Identities=24% Similarity=0.248 Sum_probs=36.4
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc-eEEEccccc
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHSI 280 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G-~i~i~g~~i 280 (288)
.+|++++++|+||+||||+++.|++...+++| ++.+-+.|.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 47999999999999999999999999999888 787766654
No 148
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.99 E-value=2.9e-06 Score=79.58 Aligned_cols=50 Identities=22% Similarity=0.394 Sum_probs=37.4
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G 271 (288)
.+.++|+ +.|.. . + .+++.+|++.+|+|||||||||++++|++...++++
T Consensus 6 ~l~~~~~-~~~~~----~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 6 GLELSNF-KSYRG----V---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EEEEESC-SSCCS----E---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred EEEEeCE-EEECC----c---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 3667777 56632 1 1 245678999999999999999999999999888763
No 149
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.95 E-value=1.8e-06 Score=79.04 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=36.3
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
++.+++|+|++||||||+++.|+|...+++|++.+.+.+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 57799999999999999999999999999999988877654
No 150
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.90 E-value=3.3e-06 Score=81.37 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=37.0
Q ss_pred EEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce--EEEcccc
Q psy7219 236 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN--AYVMNHS 279 (288)
Q Consensus 236 s~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~--i~i~g~~ 279 (288)
+.++++||+++|.|+||+||||+++.++|..+|+ |. +++.+.+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee 319 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEE 319 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSS
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeC
Confidence 3489999999999999999999999999999885 64 5776654
No 151
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.87 E-value=8.8e-06 Score=75.79 Aligned_cols=43 Identities=26% Similarity=0.317 Sum_probs=36.9
Q ss_pred EEeCCCEEEEEcCCCCChHHHHH--HHhCCCCCCCc-----eEEEccccc
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFK--MLTGAIKPTSG-----NAYVMNHSI 280 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~--~l~G~~~pt~G-----~i~i~g~~i 280 (288)
++++|+++.|.|+||+||||+++ ++.+..+++.| .+++++.+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 89999999999999999999999 45688877554 889988763
No 152
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.82 E-value=3.5e-06 Score=72.07 Aligned_cols=51 Identities=27% Similarity=0.305 Sum_probs=38.5
Q ss_pred ccceeee-EEEEeCCCEEEEEcCCCCChHHHH-HHHhCCCCCCCceEEEcccc
Q psy7219 229 KPAVNQI-SFGVGRGECFGLLGLNGAGKTTTF-KMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 229 ~~av~~i-s~~v~~Ge~~gllG~NGaGKTT~~-~~l~G~~~pt~G~i~i~g~~ 279 (288)
.+.+|++ .-++++|++++|.|+||+||||+. +++.+..+...+.+++++..
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 4567777 678999999999999999999995 45555545555666776544
No 153
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.79 E-value=2.8e-06 Score=83.26 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=48.0
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC-ceEEEcccccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVMNHSIR 281 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~-G~i~i~g~~i~ 281 (288)
...+++++++.+.+|+.+.|.||||+||||+.+.|+|..+++. |.+.+.+.+..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED 100 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence 3568999999999999999999999999999999999999988 77888766543
No 154
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.70 E-value=1.2e-05 Score=70.91 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=27.5
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
++++|++++|+|+||+||||+++.+++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999999999997554
No 155
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.69 E-value=9.3e-06 Score=76.17 Aligned_cols=48 Identities=23% Similarity=0.230 Sum_probs=43.4
Q ss_pred eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 233 ~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
+++++. +|++++++|+||+||||+...|++.+.+..|++.+.+.|..+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 567777 899999999999999999999999999999999998887654
No 156
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.65 E-value=5.3e-06 Score=70.01 Aligned_cols=46 Identities=24% Similarity=0.196 Sum_probs=39.0
Q ss_pred EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc--eEEEccccccc
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHSIRD 282 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G--~i~i~g~~i~~ 282 (288)
+.+++|.++.+.|++||||||+.+.|.+.+.|+.| .+.++|.++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~ 67 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 67 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhh
Confidence 34567899999999999999999999999988888 88888766543
No 157
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.64 E-value=2.3e-05 Score=65.68 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=27.2
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.+++|+++||.|++||||||+.++|.+.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999999999864
No 158
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.63 E-value=1.2e-05 Score=77.15 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=30.9
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
..++++++...+| ..+|+|+|||||||+++.|.+.
T Consensus 49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 4677899999999 9999999999999999999433
No 159
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.60 E-value=8.1e-06 Score=73.04 Aligned_cols=48 Identities=21% Similarity=0.121 Sum_probs=42.1
Q ss_pred ee-eEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 233 NQ-ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 233 ~~-is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
++ +++..+ |++++++|+||+||||+...|++...+..|++.+.+.|..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 44 677765 9999999999999999999999999999999998877754
No 160
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.57 E-value=3e-05 Score=66.58 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=33.1
Q ss_pred cceeeeEEEEe---CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 230 PAVNQISFGVG---RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 230 ~av~~is~~v~---~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
.-+.+.++... +|..+.+.|++||||||+.+.|...+.+ .+.+...+
T Consensus 11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 34566666665 9999999999999999999999999888 67776543
No 161
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.56 E-value=3.8e-05 Score=63.32 Aligned_cols=48 Identities=31% Similarity=0.436 Sum_probs=26.8
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC----CCCCC----CceEEEccc
Q psy7219 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG----AIKPT----SGNAYVMNH 278 (288)
Q Consensus 230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G----~~~pt----~G~i~i~g~ 278 (288)
.+++++++..++. .++++|++|+||||+++.+++ .+.|| .+++.++|.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 3788999988877 678999999999999999997 33344 345555553
No 162
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.53 E-value=2.5e-05 Score=70.69 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=26.6
Q ss_pred EEEEcCCCCChHHHHHHHhC-CCCCCCceEEEccccc
Q psy7219 245 FGLLGLNGAGKTTTFKMLTG-AIKPTSGNAYVMNHSI 280 (288)
Q Consensus 245 ~gllG~NGaGKTT~~~~l~G-~~~pt~G~i~i~g~~i 280 (288)
+.|.||||+||||+++.++| +..|+.|++.++|.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 78999999999999999999 7899999998887654
No 163
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.53 E-value=5.7e-05 Score=60.43 Aligned_cols=29 Identities=21% Similarity=0.380 Sum_probs=23.0
Q ss_pred eeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 234 QISFGVGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 234 ~is~~v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
+.++...+| ..+|+|||||||||+++.|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344454444 88999999999999999886
No 164
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.53 E-value=8.1e-06 Score=78.99 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=43.4
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
..+++++++.+ +|+.+.|.||||+||||+.+.|++...+..|.+..+|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 45778888888 89999999999999999999999999999999888774
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.48 E-value=6.2e-05 Score=69.17 Aligned_cols=37 Identities=32% Similarity=0.553 Sum_probs=30.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC-----------CCCceEEEccccc
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIK-----------PTSGNAYVMNHSI 280 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~-----------pt~G~i~i~g~~i 280 (288)
.++|+|++||||||+++.|+|... |+.|++.++|.++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 489999999999999999999876 6678999988654
No 166
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.46 E-value=5.6e-05 Score=70.14 Aligned_cols=40 Identities=33% Similarity=0.557 Sum_probs=33.2
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCC-----------CCCCCceEEEccc
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGA-----------IKPTSGNAYVMNH 278 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~-----------~~pt~G~i~i~g~ 278 (288)
+.+|..+||+|.||+||||+++.|+|. ..|+.|.+.+.+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 457788999999999999999999998 6778888887664
No 167
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.45 E-value=8.2e-05 Score=69.90 Aligned_cols=37 Identities=16% Similarity=0.382 Sum_probs=32.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC------------CCCceEEEccccc
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIK------------PTSGNAYVMNHSI 280 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~------------pt~G~i~i~g~~i 280 (288)
.++|+|+||+||||+++.|+|... +.+|.+.++|.++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 789999999999999999999864 6778999998754
No 168
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.45 E-value=2.7e-05 Score=64.70 Aligned_cols=49 Identities=29% Similarity=0.445 Sum_probs=37.8
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC--------CCCCCceEEEccc
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--------IKPTSGNAYVMNH 278 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~--------~~pt~G~i~i~g~ 278 (288)
..+++++++..+++. ++++|++|+||||+++.+++. ..++.+++.++|.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 357888888887774 689999999999999999973 2334566666664
No 169
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.40 E-value=3.9e-05 Score=73.42 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=42.5
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.+++++++.+++| +.|.||||+||||+.+.++|... .|.+.+++.++.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~ 101 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV 101 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGT
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHH
Confidence 4778889999999 88999999999999999999875 789999988764
No 170
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.36 E-value=3.9e-05 Score=70.89 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=43.7
Q ss_pred EEEEeeeEEecccccccccee--------------eeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 213 LVVKRLFKIYANSKDTKPAVN--------------QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 213 l~~~~l~k~y~~~~~~~~av~--------------~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+..+|++..|+. ++..++ |+.+.+.+||..+|+|++|+||||++++|++..
T Consensus 134 i~Fe~ltp~yP~---er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 134 ILFENLTPLHAN---SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CCTTTSCEESCC---SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ceeccccccCCC---CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 556777788864 356777 899999999999999999999999999998764
No 171
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.34 E-value=7.5e-05 Score=68.24 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=33.0
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC--CCCCCCceEE
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAY 274 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G--~~~pt~G~i~ 274 (288)
..+++++++.++ .++++|.+||||||+++.|+| ..++.+|.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 358999999998 899999999999999999999 5566666553
No 172
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.25 E-value=3.3e-05 Score=70.87 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=35.6
Q ss_pred eEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce
Q psy7219 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272 (288)
Q Consensus 212 ~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~ 272 (288)
.+.++++.+.|. ++.+.++.+|+| +++|++|+||||+++.|.|...+..|.
T Consensus 17 ~v~~~~l~~~~~----~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 17 YVGFANLPNQVH----RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp ----CCHHHHHH----THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred eEEeccchHHhC----CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 466778877774 356888999887 899999999999999998876655443
No 173
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.17 E-value=0.0001 Score=67.44 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=41.5
Q ss_pred cceeeeEE--EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE-EEccccc
Q psy7219 230 PAVNQISF--GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA-YVMNHSI 280 (288)
Q Consensus 230 ~av~~is~--~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i-~i~g~~i 280 (288)
+.+|.+-= ++++|+++.|.|++|+||||+...+++...+..|.+ ++++...
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 45555533 689999999999999999999999999888877865 7776553
No 174
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.16 E-value=1.3e-05 Score=72.68 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=39.7
Q ss_pred ccceeeeEEEEeCCCE--EEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219 229 KPAVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~--~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i 275 (288)
..+++.++..+++|+. +.+.||+|+||||+.+.+++...+..++..+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 79 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMV 79 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence 4588888888999998 9999999999999999999988776665433
No 175
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.12 E-value=0.00027 Score=64.03 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=21.9
Q ss_pred eeEEEEeCCCEEEEEcCCCCChHHHHHHH
Q psy7219 234 QISFGVGRGECFGLLGLNGAGKTTTFKML 262 (288)
Q Consensus 234 ~is~~v~~Ge~~gllG~NGaGKTT~~~~l 262 (288)
+..+...+ ..++|+|||||||||++..|
T Consensus 16 ~~~i~f~~-~~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp EEEEECCS-EEEEEECCTTSSHHHHHHHH
T ss_pred CeEEcCCC-CeEEEECCCCCCHHHHHHHH
Confidence 34444444 48899999999999999976
No 176
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.09 E-value=0.00035 Score=58.67 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=22.4
Q ss_pred eeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 234 QISFGVGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 234 ~is~~v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
+.++...+ ....|.|+|||||||++..|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34444444 488999999999999999764
No 177
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.00 E-value=0.00021 Score=59.36 Aligned_cols=35 Identities=17% Similarity=0.433 Sum_probs=28.2
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
..+++|.|++||||||+.+.|.+.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4579999999999999999998765 5566665554
No 178
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.96 E-value=0.00032 Score=60.76 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=33.8
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccccc
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~~ 282 (288)
..++..+.+.|++||||||+.+.|..... .|.+.+++-.++.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 34677899999999999999999998764 3567888766643
No 179
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.92 E-value=0.00035 Score=62.12 Aligned_cols=29 Identities=17% Similarity=0.096 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPT 269 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt 269 (288)
+++++||.|++||||||+.+.|.+.++++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 57799999999999999999999998764
No 180
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.89 E-value=0.00065 Score=57.98 Aligned_cols=28 Identities=36% Similarity=0.386 Sum_probs=24.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCCCc
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIKPTSG 271 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~pt~G 271 (288)
.++|+|++|+||||+++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5789999999999999999998877665
No 181
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.82 E-value=0.00052 Score=58.62 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=26.7
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhC---CCCCCCceE
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTG---AIKPTSGNA 273 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G---~~~pt~G~i 273 (288)
.+|++++|.|++||||||+.++|++ ...++.|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 4788999999999999999999985 333444443
No 182
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.81 E-value=0.00025 Score=66.59 Aligned_cols=40 Identities=25% Similarity=0.193 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
++.+++++|+||+||||+...|++...+..+++.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999999888988866554
No 183
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.81 E-value=0.00013 Score=66.57 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=32.4
Q ss_pred cceeeeEEEEeCCCE--EEEEcCCCCChHHHHHHHhCCC
Q psy7219 230 PAVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 230 ~av~~is~~v~~Ge~--~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.+++++++.+++|+. +.|+|++|+||||+.++|++..
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367778888889988 9999999999999999998754
No 184
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.68 E-value=0.00099 Score=54.11 Aligned_cols=28 Identities=50% Similarity=0.642 Sum_probs=24.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC----CCCCc
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI----KPTSG 271 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~----~pt~G 271 (288)
.++++|++|+||||+++.+++.. .||.|
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 57899999999999999999874 56667
No 185
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.64 E-value=0.00017 Score=68.12 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=42.8
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc-eEEEcccc
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHS 279 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G-~i~i~g~~ 279 (288)
+.+.++++..++++|+.+.|.|++|+||||+...+++...+..| .+.+-+.+
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 34689999989999999999999999999999999988776555 56554443
No 186
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.62 E-value=0.00077 Score=58.12 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=30.4
Q ss_pred eeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccccc
Q psy7219 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 232 v~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i~ 281 (288)
.++++...++| +.|.|++|+||||+.+.+++..... -+.+++.++.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~ 82 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFV 82 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSST
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHH
Confidence 33344444444 8899999999999999999876432 4667766653
No 187
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.62 E-value=0.00054 Score=62.47 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=35.2
Q ss_pred cceeeeEE--EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCce-EEEcc
Q psy7219 230 PAVNQISF--GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-AYVMN 277 (288)
Q Consensus 230 ~av~~is~--~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~-i~i~g 277 (288)
+.+|.+-= ++++|+++.|.|+||+||||+...++.......|. ++++.
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 34555433 78999999999999999999988887655444444 45554
No 188
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.60 E-value=0.00046 Score=69.77 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=35.8
Q ss_pred EEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 236 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 236 s~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
++++++|+.+.|.|++|+||||+.+.|+|...+. -+.+++.++
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l 274 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEI 274 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHH
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHh
Confidence 3478999999999999999999999999987643 367776654
No 189
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.59 E-value=0.002 Score=52.47 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=27.3
Q ss_pred EEEEEcCCCCChHHHHHHH-hCC----CCCCCc----eEEEccccc
Q psy7219 244 CFGLLGLNGAGKTTTFKML-TGA----IKPTSG----NAYVMNHSI 280 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l-~G~----~~pt~G----~i~i~g~~i 280 (288)
.++++|..|+||||+++.+ .+. ..||.| .+.++|..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 5779999999999999655 454 667766 566666543
No 190
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.57 E-value=0.0011 Score=63.47 Aligned_cols=48 Identities=8% Similarity=0.115 Sum_probs=39.9
Q ss_pred eeEEEEeCCCEEEEEcCCCCChHHHHHHHhC--CCCCCCceEEEcccccc
Q psy7219 234 QISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIR 281 (288)
Q Consensus 234 ~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G--~~~pt~G~i~i~g~~i~ 281 (288)
.+++++.+++...+.|.+|+||||+++.|.. ..+++.|++.+.+.|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 3778889999999999999999999998876 66777788877665543
No 191
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.41 E-value=0.00096 Score=61.42 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEc
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 276 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~ 276 (288)
.+..+.++|++||||||+++.+.+...+..+.+.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 577889999999999999999999888888888774
No 192
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.38 E-value=0.0023 Score=58.56 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=24.8
Q ss_pred eeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 232 v~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
.++..++..+ ..+.|.|+|||||||++..|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 3556666655 488899999999999998875
No 193
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.34 E-value=0.00089 Score=59.46 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=34.1
Q ss_pred EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
++++++..+.|.||+|+||||+.+.+++... .+-+.+++.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~l 85 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL 85 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHHH
Confidence 3456788999999999999999999998764 56677776554
No 194
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.99 E-value=0.0035 Score=55.36 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
++..+.|.|++||||||+.+.|....+ .|...+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 456788999999999999999986553 36677775
No 195
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.98 E-value=0.0043 Score=62.77 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=34.3
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHH
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF 259 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~ 259 (288)
+.+.+++.+ ..=+|||+++|++|..+++.|++|||||||.
T Consensus 14 ~~I~i~gar---------~hNLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 14 GFVQVRGAR---------QHNLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp TEEEEEEEC---------STTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred CeEEEeecc---------ccCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 457777642 3479999999999999999999999999997
No 196
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.90 E-value=0.0029 Score=53.81 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.7
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
+.+|+.+.+.|++|+||||++....
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4579999999999999999887664
No 197
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.68 E-value=0.0056 Score=55.45 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=33.5
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhCC--CCC-----CCceEEEcccc
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTGA--IKP-----TSGNAYVMNHS 279 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~--~~p-----t~G~i~i~g~~ 279 (288)
++++|+++.|.|++|+||||+...++.. .++ ..+.++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 6899999999999999999999988875 222 34566777654
No 198
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.66 E-value=0.0066 Score=62.23 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=33.6
Q ss_pred CeEEEEeeeEEeccccccccceeeeEEEEeCCCEEEEEcCCCCChHHHH
Q psy7219 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF 259 (288)
Q Consensus 211 ~~l~~~~l~k~y~~~~~~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~ 259 (288)
+.+.+++.+ ..=+|||+++|++++.+.+.|++|||||||.
T Consensus 24 ~~I~i~gar---------~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 24 DRLIVKGAR---------EHNLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp CEEEEEEEC---------SSSCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred CcEEEeccc---------ccccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 446666542 3479999999999999999999999999986
No 199
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.66 E-value=0.0066 Score=62.03 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=28.5
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCCChHHHH
Q psy7219 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTF 259 (288)
Q Consensus 230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~ 259 (288)
.=+|||+++|++++.+.+.|++|||||||.
T Consensus 32 hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred ccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 479999999999999999999999999986
No 200
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.60 E-value=0.014 Score=46.95 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|+.|+||||+++.+++..
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999744
No 201
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.58 E-value=0.008 Score=51.67 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.++|+|..|+||||+++.|+|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999999998764
No 202
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.58 E-value=0.0069 Score=55.05 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.-.++++|+||+||||+++.|+|..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999976
No 203
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.57 E-value=0.0063 Score=55.03 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=29.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCCC--ceEEEcccc
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIKPTS--GNAYVMNHS 279 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~pt~--G~i~i~g~~ 279 (288)
++.|.|++|+||||+++.+.+...+.. ..++++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 788999999999999999999887753 456666443
No 204
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.54 E-value=0.0039 Score=54.90 Aligned_cols=32 Identities=31% Similarity=0.330 Sum_probs=27.6
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCCCCCCceE
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 273 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i 273 (288)
...+.|.||+|+||||+.+.+.+...++.|..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35788999999999999999999887777754
No 205
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.007 Score=49.07 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.++++|+.|+||||+++.+++...
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 678999999999999999998653
No 206
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.44 E-value=0.0061 Score=48.83 Aligned_cols=28 Identities=50% Similarity=0.630 Sum_probs=22.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCC----CCCCCc
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA----IKPTSG 271 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~----~~pt~G 271 (288)
.++++|++|+||||+++.+++. ..||-|
T Consensus 20 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~ 51 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQIGEVVTTKPTIG 51 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSEEEEECSSTT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCccCCcCc
Confidence 6789999999999999999853 345555
No 207
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.41 E-value=0.006 Score=62.30 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=29.0
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHH
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTF 259 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~ 259 (288)
..=+|||+++|++++.+.+.|++|||||||.
T Consensus 11 ~hNLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 11 VHNLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp STTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred ccccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 3479999999999999999999999999986
No 208
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.39 E-value=0.013 Score=48.43 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|..|+||||+++.+++.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4689999999999999988743
No 209
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.38 E-value=0.01 Score=48.10 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|+.|+||||+++.+++.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4689999999999999999874
No 210
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.36 E-value=0.01 Score=53.15 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=33.5
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhCCC-CC------CCceEEEcccc
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAI-KP------TSGNAYVMNHS 279 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~-~p------t~G~i~i~g~~ 279 (288)
++++|+.+.|.|++|+||||+...++... .| ..+.++++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 78999999999999999999998887653 33 34567777654
No 211
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.29 E-value=0.0039 Score=58.92 Aligned_cols=45 Identities=29% Similarity=0.362 Sum_probs=35.3
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275 (288)
Q Consensus 230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i 275 (288)
.+++.+ ..+-+|+..+|.|++|+||||++++|.+......|.+.+
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 366666 677799999999999999999999998765544454443
No 212
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.27 E-value=0.0084 Score=48.43 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=22.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIKPT 269 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~pt 269 (288)
.++++|+.|+||||+++.+.|.....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~~ 41 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPEG 41 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccc
Confidence 46799999999999999999876543
No 213
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.27 E-value=0.0094 Score=48.08 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|+.|+||||+++.++|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 67899999999999999999875
No 214
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.26 E-value=0.0094 Score=48.30 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|+.|+||||+++.++|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999864
No 215
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.26 E-value=0.015 Score=47.13 Aligned_cols=28 Identities=36% Similarity=0.480 Sum_probs=23.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC------CCCCCc
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA------IKPTSG 271 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~------~~pt~G 271 (288)
.++++|..|+||||+++.+++. +.||.|
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 5679999999999999999983 456666
No 216
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.26 E-value=0.011 Score=51.43 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=23.3
Q ss_pred CEEEEEcCCCCChHHHHHHHhCCCCCCCc
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G 271 (288)
..++++|.+|+||||+++.|+|...+..|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 58899999999999999999998765444
No 217
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.26 E-value=0.018 Score=46.01 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|+.|+||||+++.+++.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4679999999999999998853
No 218
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.22 E-value=0.014 Score=50.13 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++|+|+.|+||||+++.|+|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 219
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.17 E-value=0.015 Score=47.43 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=23.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCC-----CCCCCceE
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA-----IKPTSGNA 273 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~-----~~pt~G~i 273 (288)
.++++|+.|+||||+++.+.+. +.||.|..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~ 50 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS 50 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceE
Confidence 4679999999999999999754 34555544
No 220
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.09 E-value=0.0038 Score=59.24 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=32.1
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~ 279 (288)
.++++++.+++| +.|.||+|+||||+.+.+++.... --+.+++.+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~--~f~~is~~~ 84 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV--PFFHISGSD 84 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGG
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC--CeeeCCHHH
Confidence 455566666676 779999999999999999986532 234444444
No 221
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.03 E-value=0.0055 Score=55.14 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=30.3
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCCCCC----CceEEEccc
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAIKPT----SGNAYVMNH 278 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt----~G~i~i~g~ 278 (288)
.+++.+.|.|++|+||||+++.+.+..++. ...++++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 356788999999999999999999877553 345666643
No 222
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.90 E-value=0.017 Score=47.54 Aligned_cols=25 Identities=36% Similarity=0.262 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
++-+++|.|+.||||||+.+.|...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999753
No 223
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.83 E-value=0.017 Score=45.75 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|+.|+||||+++.+++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999853
No 224
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.81 E-value=0.014 Score=47.81 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|..|+||||+++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5789999999999999999864
No 225
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.81 E-value=0.017 Score=47.88 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=23.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC-----CCCCce
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI-----KPTSGN 272 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~-----~pt~G~ 272 (288)
.++++|..|+||||+++.+++.. .||.|.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~ 63 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE 63 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCccce
Confidence 57799999999999999998763 456554
No 226
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.80 E-value=0.017 Score=45.67 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.+++..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 46799999999999999998654
No 227
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.78 E-value=0.017 Score=47.16 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
.+.++|..|+||||+++.++|...+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5779999999999999999996543
No 228
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.77 E-value=0.018 Score=45.90 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|+.|+||||+++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4789999999999999999854
No 229
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.76 E-value=0.018 Score=46.59 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|+.|+||||+++.+++..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47799999999999999998754
No 230
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.76 E-value=0.016 Score=47.63 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCChHHHHHHHh
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
.-.++|.|+.||||||+.+.|.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4478999999999999999887
No 231
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.73 E-value=0.023 Score=50.87 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=30.7
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
...+++..+.+ .|.-+.+.|++|+||||+...|.+
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 35788888888 789999999999999999988876
No 232
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.72 E-value=0.023 Score=49.10 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.++++|+.|+||||+++.|+|...
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~~ 61 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQV 61 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 568999999999999999998663
No 233
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.70 E-value=0.016 Score=46.84 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.+++..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998865
No 234
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.70 E-value=0.022 Score=47.24 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|..|+||||+++.+++.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999874
No 235
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.65 E-value=0.026 Score=45.75 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=23.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC-----CCCCCceE
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA-----IKPTSGNA 273 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~-----~~pt~G~i 273 (288)
.++++|..|+||||+++.+++. +.||.|..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~ 57 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDT 57 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce
Confidence 5779999999999999888643 45666643
No 236
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.65 E-value=0.014 Score=48.08 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=24.9
Q ss_pred CEEEEEcCCCCChHHHHHHHhCCCCCCCceE
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 273 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G~i 273 (288)
..+.|.|++|+||||+.+.+..........+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 5778999999999999999988765544443
No 237
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.61 E-value=0.021 Score=47.60 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
++..+.|.|++|+||||+.+.+......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5678899999999999999999876543
No 238
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.61 E-value=0.0035 Score=63.35 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=35.9
Q ss_pred eEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
.++++.+++.+.|.||+|+||||+.+.+++... .+-+.+++.++
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l 547 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL 547 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSS
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHh
Confidence 467889999999999999999999999998874 34556665554
No 239
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.61 E-value=0.02 Score=46.16 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998653
No 240
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.54 E-value=0.019 Score=47.25 Aligned_cols=30 Identities=27% Similarity=0.240 Sum_probs=22.6
Q ss_pred EEEEEcCCCCChHHHHHHHh-----CCCCCCCceE
Q psy7219 244 CFGLLGLNGAGKTTTFKMLT-----GAIKPTSGNA 273 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~-----G~~~pt~G~i 273 (288)
.++++|..|+||||+++.++ +...|+.|..
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~ 66 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN 66 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEE
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecce
Confidence 57899999999999997766 3555666543
No 241
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.50 E-value=0.022 Score=46.63 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.+++..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57799999999999999998754
No 242
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.49 E-value=0.011 Score=49.15 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.|+|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999975
No 243
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.49 E-value=0.023 Score=46.09 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=22.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC-----CCCCCc
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA-----IKPTSG 271 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~-----~~pt~G 271 (288)
.++++|+.|+||||+++.+++. ..|+.|
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~ 57 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG 57 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 4789999999999999999754 345556
No 244
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.47 E-value=0.022 Score=45.89 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|..|+||||+++.+++.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999954
No 245
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.45 E-value=0.022 Score=46.65 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|+.|+||||+++.+++..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 56799999999999999998653
No 246
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.44 E-value=0.023 Score=46.04 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.+++..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57799999999999999998753
No 247
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.44 E-value=0.024 Score=45.76 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|+.|+||||+++.+++..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 46899999999999999998654
No 248
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.44 E-value=0.023 Score=46.25 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.+++..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999999754
No 249
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.35 E-value=0.019 Score=47.77 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|+.|+||||+++.|++.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999875
No 250
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.34 E-value=0.022 Score=50.16 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.++++|+.||||||+++.|+|..-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 588999999999999999999864
No 251
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.34 E-value=0.024 Score=48.56 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCChHHHHHHHhC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
+-.++|.|+.||||||..+.|.-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34788999999999999999974
No 252
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.32 E-value=0.025 Score=47.47 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.++|..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 253
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.29 E-value=0.023 Score=48.70 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
++||.|+.||||||+.+.|...
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 254
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.25 E-value=0.022 Score=45.68 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.+++..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999999999999999753
No 255
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.24 E-value=0.028 Score=45.43 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|..|+||||+++.+++.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5679999999999999999853
No 256
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.23 E-value=0.027 Score=45.62 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|+.|+||||+++.+++..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57799999999999999998644
No 257
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.23 E-value=0.028 Score=45.36 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|..|+||||+++.+++.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4679999999999999999753
No 258
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.17 E-value=0.029 Score=45.15 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|+.|+||||+++.+++.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5779999999999999999864
No 259
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.15 E-value=0.022 Score=46.17 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|+.|+||||+++.+++..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 46799999999999999999755
No 260
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.13 E-value=0.03 Score=45.51 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=23.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCC-----CCCCCce
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA-----IKPTSGN 272 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~-----~~pt~G~ 272 (288)
.++++|..|+||||+++.+++. +.||.|.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~ 63 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLES 63 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCc
Confidence 5789999999999999999864 3455554
No 261
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.10 E-value=0.026 Score=49.43 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCChHHHHHHHh
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~ 263 (288)
-.+||.|+.||||||+.+.|.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 262
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.10 E-value=0.027 Score=46.33 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.+++..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 263
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.08 E-value=0.025 Score=49.45 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
++..+.|.||+|+||||+.+.+++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 456788999999999999999998653
No 264
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.02 E-value=0.031 Score=45.46 Aligned_cols=29 Identities=28% Similarity=0.171 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC-----CCCCce
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI-----KPTSGN 272 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~-----~pt~G~ 272 (288)
.++++|..|+||||+++.+++.. .||.|.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~ 55 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFD 55 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--------CCSSE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccc
Confidence 57899999999999999998653 456553
No 265
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.00 E-value=0.038 Score=45.64 Aligned_cols=24 Identities=33% Similarity=0.217 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.++++|+.|+||||+++.+++...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 467999999999999999997644
No 266
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.00 E-value=0.04 Score=47.73 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.|+|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999999999999999866
No 267
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.98 E-value=0.031 Score=45.64 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|+.|+||||+++.+++..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57899999999999999998654
No 268
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.97 E-value=0.028 Score=47.93 Aligned_cols=27 Identities=33% Similarity=0.651 Sum_probs=20.7
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.+|-.+.+.|+.||||||..+.|...+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999987544
No 269
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.97 E-value=0.032 Score=45.64 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.+++..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998643
No 270
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.94 E-value=0.032 Score=45.44 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|+.|+||||+++.+++..
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLGE 53 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999997643
No 271
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.87 E-value=0.022 Score=53.43 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i 275 (288)
++.++.++|++|+||||+..-|+..+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45689999999999999999998665544334443
No 272
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.87 E-value=0.041 Score=48.36 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.9
Q ss_pred CEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
-.++++|.+|+||||+++.|+|....
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCcee
Confidence 36899999999999999999997643
No 273
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.86 E-value=0.037 Score=45.34 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|+.|+||||+++.+++..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999998543
No 274
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.85 E-value=0.038 Score=46.68 Aligned_cols=24 Identities=42% Similarity=0.423 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
++-.+.+.|+.||||||+.+.|+-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999873
No 275
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.83 E-value=0.042 Score=45.97 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.++|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999999743
No 276
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.82 E-value=0.0092 Score=54.06 Aligned_cols=48 Identities=13% Similarity=0.071 Sum_probs=37.8
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i 275 (288)
+.+.++.+.-++++|+.+.|.|++|+||||+...++.......+.+.+
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~ 79 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV 79 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 356788887799999999999999999999998887654444455543
No 277
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.81 E-value=0.031 Score=48.76 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.++++|..|+||||+++.|+|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 688999999999999999999764
No 278
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.81 E-value=0.038 Score=47.39 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+|..+.+.|+.||||||..+.|...+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999986544
No 279
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.75 E-value=0.016 Score=51.69 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=32.1
Q ss_pred cccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 228 ~~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
+.+.++++.-++++|+.+.|.|++|+||||+...++.
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3567888887899999999999999999999877763
No 280
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.69 E-value=0.041 Score=44.48 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|+.|+||||+++.+++.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999854
No 281
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.62 E-value=0.029 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++|+|.+|+||||+++.|+|..
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999853
No 282
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.55 E-value=0.062 Score=43.98 Aligned_cols=34 Identities=15% Similarity=0.010 Sum_probs=26.0
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHh
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
+..++.....+ .|.-+.+.|++|+||||+...|.
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 34556666655 48889999999999999887653
No 283
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.53 E-value=0.032 Score=44.94 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|+.|+||||+++.+.+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999754
No 284
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.53 E-value=0.077 Score=44.39 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=29.0
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
...+++....+ .|..+.|.|++|+||||+..-|...
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34677776666 5788999999999999999988754
No 285
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.44 E-value=0.054 Score=51.15 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=27.0
Q ss_pred EEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+.+.+||..+|.|+.|+||||++.++..-.
T Consensus 148 ~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~ 177 (482)
T 2ck3_D 148 APYAKGGKIGLFGGAGVGKTVLIMELINNV 177 (482)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cccccCCeeeeecCCCCChHHHHHHHHHhh
Confidence 578899999999999999999999987654
No 286
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.43 E-value=0.051 Score=49.15 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
++..+.|+||+|+||||+...|+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456889999999999999999998763
No 287
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.43 E-value=0.048 Score=50.56 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=27.4
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcc
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g 277 (288)
-.+.+.+.+.|++||||||+.+.|.... |-..++.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~ 289 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR 289 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEcc
Confidence 4567899999999999999999997543 4455544
No 288
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.37 E-value=0.013 Score=54.80 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=26.2
Q ss_pred CEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i 275 (288)
.+++++|++|+||||+...|++.......++.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVll 132 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPAL 132 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 588999999999999999999876544334444
No 289
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.30 E-value=0.044 Score=48.71 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=27.6
Q ss_pred ceeeeE-EEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 231 AVNQIS-FGVGRGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 231 av~~is-~~v~~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
.+|.+- =++++|+.+.|.|++|+||||+...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444432 2789999999999999999999987774
No 290
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.28 E-value=0.026 Score=51.38 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=35.1
Q ss_pred ccceeeeE--EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC-ceEEEcc
Q psy7219 229 KPAVNQIS--FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVMN 277 (288)
Q Consensus 229 ~~av~~is--~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~-G~i~i~g 277 (288)
.+.+|.+- =++++|+.+.|.|++|+||||+...++....... ..++++.
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 34566653 1599999999999999999999887775433222 3556665
No 291
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.27 E-value=0.046 Score=47.32 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=24.5
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
+.++..+-|.||.|+||||+.+.++....
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 44566788999999999999999987753
No 292
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.27 E-value=0.051 Score=50.20 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=27.7
Q ss_pred eeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 234 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 234 ~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
|.=+-+.+||..+|+|+.|+||||++++|+..
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHH
Confidence 34466889999999999999999999988764
No 293
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.25 E-value=0.019 Score=57.71 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=26.5
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCC
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 270 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~ 270 (288)
+..|+.+.+.|+||+||||++.++.+...+..
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~ 137 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPH 137 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGG
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 56789999999999999999988877655444
No 294
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.25 E-value=0.013 Score=52.40 Aligned_cols=37 Identities=27% Similarity=0.298 Sum_probs=26.3
Q ss_pred ceeeeEEEEeCC--CEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 231 AVNQISFGVGRG--ECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 231 av~~is~~v~~G--e~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
+++.+.-.+..| ..+.|.||+|+||||+.+.+++...
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334444334444 3488999999999999999988753
No 295
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.17 E-value=0.041 Score=45.10 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.+++..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 46799999999999999997543
No 296
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.15 E-value=0.06 Score=42.76 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+..+.|.|+.|+||||+.+.+....
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567799999999999999887654
No 297
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.14 E-value=0.05 Score=45.23 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++-+++..
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 57799999999999998888653
No 298
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.00 E-value=0.022 Score=46.37 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=3.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|+.|+||||+++.+++.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5779999999999999988876
No 299
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.96 E-value=0.058 Score=45.80 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+|-.+.+-|+.||||||..+.|....
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999987544
No 300
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.92 E-value=0.07 Score=41.58 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
+..+-|.|+.|+|||++.+.+......
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 345669999999999999999876543
No 301
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.84 E-value=0.049 Score=46.05 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=21.4
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
++..++-|+||.||||+|..+.|+-.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34457789999999999999999843
No 302
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.83 E-value=0.065 Score=45.53 Aligned_cols=28 Identities=29% Similarity=0.202 Sum_probs=23.0
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+++...+-|.||.|+||||+.+.+....
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3445567899999999999999998754
No 303
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.83 E-value=0.042 Score=45.35 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.+.|.|+.|+||||+.+.+....
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999987544
No 304
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.75 E-value=0.068 Score=44.35 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=23.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCC-----CCCCCceE
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA-----IKPTSGNA 273 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~-----~~pt~G~i 273 (288)
.+.++|..|+||||+++.+++. +.||.|.-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~ 63 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN 63 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeee
Confidence 5779999999999999998764 35555543
No 305
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=92.74 E-value=0.028 Score=45.91 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
.++++|..|+||||+++.+++...+
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~~~ 59 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDTYT 59 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4679999999999999999986543
No 306
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.73 E-value=0.072 Score=44.77 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=27.3
Q ss_pred ccceeeeEE-EEeCCCEEEEEcCCCCChHHHHHHH
Q psy7219 229 KPAVNQISF-GVGRGECFGLLGLNGAGKTTTFKML 262 (288)
Q Consensus 229 ~~av~~is~-~v~~Ge~~gllG~NGaGKTT~~~~l 262 (288)
.+.+|++-= ++++|+.+-+.|+.|+||||+..-+
T Consensus 16 i~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 16 IPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp CTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHH
T ss_pred cHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 345666543 7999999999999999999997544
No 307
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.71 E-value=0.047 Score=47.04 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=23.3
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+++-.+.+-|..||||||+.+.|....
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 466788999999999999999998765
No 308
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.68 E-value=0.041 Score=49.88 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
-+++++|+.|+||||+++.|++..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999997554
No 309
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.64 E-value=0.051 Score=48.16 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCCCCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAIKPT 269 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~~pt 269 (288)
+..+.|.||+|+||||+.+.+.+...+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 3467799999999999999999876543
No 310
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.35 E-value=0.037 Score=51.75 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCCCC---CCceEEEcccc
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAIKP---TSGNAYVMNHS 279 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~~p---t~G~i~i~g~~ 279 (288)
+..+.|.|++|+||||+++.+.+.... ..--++++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 467889999999999999999986632 22334555433
No 311
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=92.06 E-value=0.091 Score=47.51 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=26.7
Q ss_pred eeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 233 ~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+.+.+.++---.++|+|..+|||||+++.|++..
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCC
Confidence 4455555555568999999999999999999753
No 312
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.03 E-value=0.073 Score=42.25 Aligned_cols=25 Identities=36% Similarity=0.267 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+..+-|.|+.|+||||+.+.+....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4456789999999999999887654
No 313
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.98 E-value=0.057 Score=44.77 Aligned_cols=28 Identities=46% Similarity=0.526 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHH-HhCC----CCCCCc
Q psy7219 244 CFGLLGLNGAGKTTTFKM-LTGA----IKPTSG 271 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~-l~G~----~~pt~G 271 (288)
.++++|..|+||||+++. +.|. +.|+.|
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~ 49 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 49 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHHTCEEETTTT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc
Confidence 467999999999999998 5543 456666
No 314
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.98 E-value=0.043 Score=51.27 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=33.2
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.+.++++.-++++|+.+.|.|++|+||||+...++....
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456788877899999999999999999999887776544
No 315
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.93 E-value=0.068 Score=50.66 Aligned_cols=31 Identities=35% Similarity=0.427 Sum_probs=27.4
Q ss_pred EEEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
+.+.+|+..||.|..|.||||++.+|..-..
T Consensus 160 ~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a 190 (498)
T 1fx0_B 160 APYRRGGKIGLFGGAGVGKTVLIMELINNIA 190 (498)
T ss_dssp SCCCTTCCEEEEECSSSSHHHHHHHHHHHTT
T ss_pred cccccCCeEEeecCCCCCchHHHHHHHHHHH
Confidence 5688999999999999999999998877543
No 316
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.68 E-value=0.1 Score=47.10 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999975
No 317
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.88 E-value=0.034 Score=45.52 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|..|+||||+++.+++.
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 5789999999999999877753
No 318
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=91.49 E-value=0.078 Score=48.39 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
++..++++|..|+||||+++.|+|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5667899999999999999999986
No 319
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.43 E-value=0.1 Score=49.74 Aligned_cols=22 Identities=41% Similarity=0.606 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCChHHHHHHHh
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
..+++++|++|+||||+..-|+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4478999999999999999999
No 320
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.38 E-value=0.066 Score=50.46 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
|=.++++|+.|+||||+++.|+|.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 335889999999999999999875
No 321
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=91.11 E-value=0.076 Score=48.69 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.+||+|..-+||||+|+.|||..
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~ 96 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE 96 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 322
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=91.04 E-value=0.12 Score=49.45 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.++|..
T Consensus 43 kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 43 KVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp EEEEESSSCSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999999999999999865
No 323
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=90.93 E-value=0.087 Score=48.07 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
++..++++|..|+||||+++.|+|.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5678999999999999999999986
No 324
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.69 E-value=0.11 Score=46.59 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCC-------CCceEEEcccc
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKP-------TSGNAYVMNHS 279 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~p-------t~G~i~i~g~~ 279 (288)
++..+.|.||.|+||||+.+.+...... ....++++..+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 4567889999999999999999876533 23345666543
No 325
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=90.62 E-value=0.13 Score=49.56 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.++++|..|+||||+++.|+|..-
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~~ 90 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQEV 90 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCcc
Confidence 788999999999999999999753
No 326
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=90.48 E-value=0.12 Score=48.97 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|+.|+||||+++.|+|..
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999874
No 327
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.39 E-value=0.17 Score=47.08 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.++++|..|+||||+++.++|...
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~~ 200 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEER 200 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998754
No 328
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=90.30 E-value=0.14 Score=45.84 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.+++..
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~ 189 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGE 189 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSC
T ss_pred eEEEECCCCccHHHHHHHHhCCC
Confidence 67899999999999999998764
No 329
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.25 E-value=0.17 Score=45.25 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
+|..+-|.||.|+||||+.+.+..........+.+++.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 45688899999999999999999877654455555543
No 330
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.22 E-value=0.18 Score=43.90 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
++..+-|.|+.|+||||+.+.++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34567899999999999998766544
No 331
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=90.17 E-value=0.16 Score=44.65 Aligned_cols=31 Identities=23% Similarity=0.076 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCCChHHHHHHHhC-----CCCCCCce
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTG-----AIKPTSGN 272 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G-----~~~pt~G~ 272 (288)
.-.++++|..|+||||+++.+++ .+.||.|.
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~ 190 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD 190 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEE
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccc
Confidence 34688999999999999977763 34555554
No 332
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=90.10 E-value=0.2 Score=48.73 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
-.++++|+.|+||||+++.|+|..
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 468899999999999999999975
No 333
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.02 E-value=0.1 Score=49.13 Aligned_cols=32 Identities=9% Similarity=0.089 Sum_probs=28.5
Q ss_pred EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
+.+.+||..+|.|..|.||||++++|+.....
T Consensus 147 ~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 147 NTLVRGQKLPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp SCCBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred eccccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 57889999999999999999999999976543
No 334
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=89.59 E-value=0.055 Score=51.29 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
=.++|+|..++||||+++.|+|..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~ 267 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNED 267 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHT
T ss_pred CEEEEECcCCCcHHHHHHHHHCCC
Confidence 368899999999999999999864
No 335
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.58 E-value=0.2 Score=42.48 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCChHHHHHHHh
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~ 263 (288)
-+..+.|..|+||||+...|+
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHH
Confidence 367789999999999999998
No 336
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.56 E-value=0.071 Score=45.70 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q psy7219 245 FGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 245 ~gllG~NGaGKTT~~~~l~G~ 265 (288)
+.|.||.|+||||+.+.+...
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 568899999999999999864
No 337
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.50 E-value=0.19 Score=40.74 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q psy7219 245 FGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 245 ~gllG~NGaGKTT~~~~l~G~ 265 (288)
+.|.|+.|+||||+.+.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999988764
No 338
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=89.49 E-value=0.24 Score=49.00 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|+.|+||||+++.|+|..
T Consensus 71 ~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 71 RLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp EEEEECCTTSCHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 339
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=89.43 E-value=0.22 Score=42.59 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEEcCC---------CCChHHHHHHHhC
Q psy7219 244 CFGLLGLN---------GAGKTTTFKMLTG 264 (288)
Q Consensus 244 ~~gllG~N---------GaGKTT~~~~l~G 264 (288)
.++++|.. |+||||+++-+++
T Consensus 21 ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 21 NISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp EEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred EEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 46799999 9999999999998
No 340
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.43 E-value=0.15 Score=39.52 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
..+-|.|+.|+|||++.+.+.....
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 3466899999999999999987643
No 341
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.41 E-value=0.23 Score=43.99 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
++.+-|.|+.|+|||++.+.+.....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67888999999999999999886544
No 342
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.37 E-value=0.22 Score=45.36 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=27.9
Q ss_pred cceeeeEE--EEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 230 PAVNQISF--GVGRGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 230 ~av~~is~--~v~~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
+.+|.+-= ++++|+.+-|.|+.|+||||+...++.
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 45555433 689999999999999999999876654
No 343
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.24 E-value=0.17 Score=42.47 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=23.0
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+++.-++.+-||.|+||||+...|+...
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 5555688899999999999988887654
No 344
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.16 E-value=0.24 Score=47.06 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=28.0
Q ss_pred EEEeCCCEEEEEcCCCCChHHH-HHHHhCCCC
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTT-FKMLTGAIK 267 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~-~~~l~G~~~ 267 (288)
+.+.+||..+|.|+.|+||||+ +.+|.....
T Consensus 170 ~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~ 201 (515)
T 2r9v_A 170 IPIGRGQRELIIGDRQTGKTAIAIDTIINQKG 201 (515)
T ss_dssp SCEETTCBEEEEEETTSSHHHHHHHHHHTTTT
T ss_pred cccccCCEEEEEcCCCCCccHHHHHHHHHhhc
Confidence 5688999999999999999999 889988764
No 345
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=89.12 E-value=0.22 Score=45.33 Aligned_cols=21 Identities=33% Similarity=0.388 Sum_probs=18.4
Q ss_pred CEEEEEcCCCCChHHHHHHHh
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~ 263 (288)
..+.|+|..||||||++|.+.
T Consensus 34 ~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 34 VKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 367799999999999999884
No 346
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.05 E-value=0.24 Score=44.47 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=27.3
Q ss_pred eeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 232 v~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
++.+--++++|...-|.|+.|+||||+...+...
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3333347889999999999999999999988753
No 347
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.94 E-value=0.26 Score=44.24 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+..+.|.|+.|.||||+.+.+....
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4478899999999999999998654
No 348
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.92 E-value=0.22 Score=46.45 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
+..++.++|++|+||||+.--|+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458889999999999999888833
No 349
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.90 E-value=0.22 Score=43.18 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+..+-|.|+.|+||||+.+.+....
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3456689999999999999998765
No 350
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=88.88 E-value=0.15 Score=45.72 Aligned_cols=42 Identities=5% Similarity=0.003 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCC--------CCceEEEccccccc
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKP--------TSGNAYVMNHSIRD 282 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~p--------t~G~i~i~g~~i~~ 282 (288)
++.++-|.||.|.|||++.+.+...... .--.+++||..+.+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 5667889999999999999998876632 22467889877654
No 351
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=88.86 E-value=0.23 Score=47.65 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=26.8
Q ss_pred EEEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
+.+.+|+..+|.|+.|+|||+++.+|+..
T Consensus 216 ~PigrGqr~~Ifg~~g~GKT~l~~~ia~~ 244 (578)
T 3gqb_A 216 FPVAMGGTAAIPGPFGSGKSVTQQSLAKW 244 (578)
T ss_dssp SCEETTCEEEECCCTTSCHHHHHHHHHHH
T ss_pred ccccCCCEEeeeCCCCccHHHHHHHHHhc
Confidence 56889999999999999999999999865
No 352
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.79 E-value=0.25 Score=47.63 Aligned_cols=29 Identities=31% Similarity=0.376 Sum_probs=26.7
Q ss_pred EEEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
+-+.+|+..+|.|+.|+|||+++.+|+..
T Consensus 227 ~PigrGqr~~Ifgg~g~GKT~L~~~ia~~ 255 (600)
T 3vr4_A 227 FPVTKGGAAAVPGPFGAGKTVVQHQIAKW 255 (600)
T ss_dssp SCCBTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCccCCCEEeeecCCCccHHHHHHHHHhc
Confidence 56889999999999999999999999865
No 353
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.66 E-value=0.14 Score=49.52 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEE
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i 275 (288)
.+..+.+.|+.|+||||+++.+..........|.+
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~ 237 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 57899999999999999999987655443444444
No 354
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=88.57 E-value=0.15 Score=47.82 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=31.0
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
|+|.+ +.+.+||..+|.|..|.||||++.+|+.....
T Consensus 141 aID~l-~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 141 AIDHL-NTLVRGQKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp HHHTT-SCCBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEecc-cccccCCEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 44444 67889999999999999999999999876554
No 355
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=88.44 E-value=0.13 Score=48.23 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=28.6
Q ss_pred EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
+.+.+||..+|.|..|.||||++.+|+.....
T Consensus 142 ~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 142 NTLVRGQKLPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp SCCBTTCBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred cccccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 57889999999999999999999999876654
No 356
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=88.39 E-value=0.089 Score=49.32 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=24.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCCCceE
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 273 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~pt~G~i 273 (288)
.+-|.||.|+||||+.+.|.......-..+
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 467899999999999999998876543333
No 357
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.33 E-value=0.25 Score=44.53 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+..+.|.||+|+||||+.+.|+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999998765
No 358
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.18 E-value=0.27 Score=46.14 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
..++.++|..||||||+.+.|+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 447889999999999999999753
No 359
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=88.13 E-value=0.26 Score=48.15 Aligned_cols=26 Identities=46% Similarity=0.523 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+|..+.|.|..||||||+.+.|.-..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35578899999999999999997644
No 360
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=88.08 E-value=0.44 Score=42.46 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=26.8
Q ss_pred cceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 230 ~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
..+++....+ .|.-+.+.|++|+||||+...|..
T Consensus 136 ~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 136 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4677766666 478899999999999988877653
No 361
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.06 E-value=0.25 Score=42.43 Aligned_cols=22 Identities=23% Similarity=0.156 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.+-|.||.|+||||+.+.+...
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5668999999999999999875
No 362
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.05 E-value=0.19 Score=48.28 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=26.5
Q ss_pred EEEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
+-+.+|+..+|.|+.|+|||+++++|+..
T Consensus 222 ~PigkGqr~~I~g~~g~GKT~L~~~ia~~ 250 (588)
T 3mfy_A 222 FPQAKGGTAAIPGPAGSGKTVTQHQLAKW 250 (588)
T ss_dssp SCEETTCEEEECSCCSHHHHHHHHHHHHH
T ss_pred CCcccCCeEEeecCCCCCHHHHHHHHHhc
Confidence 56889999999999999999999999754
No 363
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=87.98 E-value=0.28 Score=46.30 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|+.++||||+++.|+|..
T Consensus 21 ~I~iiG~~d~GKSTLi~~L~~~~ 43 (482)
T 1wb1_A 21 NLGIFGHIDHGKTTLSKVLTEIA 43 (482)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCChHHHHHHHHHCCC
Confidence 57899999999999999999866
No 364
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=87.71 E-value=0.34 Score=43.69 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+...+.|.|+.|+||||+.+.++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 44567899999999999999998765
No 365
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.63 E-value=0.29 Score=42.87 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.+.|.||.|+|||++.+.++...
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45677999999999999998765
No 366
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.62 E-value=0.33 Score=43.14 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+...+-|.||.|+||||+.+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34567799999999999999999875
No 367
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=87.42 E-value=0.32 Score=47.40 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.=.++++|+.++||||+++.|++.
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCHHHHHHHHHHh
Confidence 347899999999999999999876
No 368
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=87.41 E-value=0.26 Score=46.96 Aligned_cols=29 Identities=10% Similarity=-0.074 Sum_probs=24.6
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
++|-++.+.|..||||||+-+.|...+.-
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45678889999999999999999876654
No 369
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=87.30 E-value=0.27 Score=46.72 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=28.2
Q ss_pred EEEeCCCEEEEEcCCCCChHHH-HHHHhCCCC
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTT-FKMLTGAIK 267 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~-~~~l~G~~~ 267 (288)
+.+.+||..+|.|+.|+||||+ +.+|.....
T Consensus 158 ~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~ 189 (507)
T 1fx0_A 158 IPVGRGQRELIIGDRQTGKTAVATDTILNQQG 189 (507)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCT
T ss_pred cccccCCEEEEecCCCCCccHHHHHHHHHhhc
Confidence 5788999999999999999999 889988765
No 370
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=87.27 E-value=0.32 Score=46.75 Aligned_cols=26 Identities=38% Similarity=0.575 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+|..+.+.|..||||||+.+.|....
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997643
No 371
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=87.21 E-value=0.25 Score=46.88 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=27.6
Q ss_pred EEEeCCCEEEEEcCCCCChHHH-HHHHhCCCC
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTT-FKMLTGAIK 267 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~-~~~l~G~~~ 267 (288)
+.+.+||..+|.|+.|.||||+ +.+|.....
T Consensus 157 ~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~ 188 (502)
T 2qe7_A 157 IPIGRGQRELIIGDRQTGKTTIAIDTIINQKG 188 (502)
T ss_dssp SCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS
T ss_pred cccccCCEEEEECCCCCCchHHHHHHHHHhhc
Confidence 5788999999999999999999 888888754
No 372
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.00 E-value=0.33 Score=46.98 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+|-++.+.|..||||||+.+.|.-.+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999997654
No 373
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=86.99 E-value=0.13 Score=47.93 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|+.|+||||+++.|++..
T Consensus 36 kI~IvG~~~vGKSTLin~L~~~~ 58 (423)
T 3qq5_A 36 YIVVAGRRNVGKSSFMNALVGQN 58 (423)
T ss_dssp EEEEECSCSTTTTTTTTSSCC--
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999999865
No 374
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=86.92 E-value=0.34 Score=45.54 Aligned_cols=23 Identities=39% Similarity=0.405 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++++|..|+||||+++.+++..
T Consensus 324 ki~lvG~~nvGKSsLl~~l~~~~ 346 (497)
T 3lvq_E 324 RILMLGLDAAGKTTILYKLKLGQ 346 (497)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 375
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=86.86 E-value=0.36 Score=46.08 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
...++.++|..||||||+-+.|+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999999864
No 376
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.70 E-value=0.5 Score=40.29 Aligned_cols=37 Identities=16% Similarity=0.057 Sum_probs=26.9
Q ss_pred CEEEEEcCCCCChHHHHHHHhCCCCCCCc-eEEEcccc
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHS 279 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G-~i~i~g~~ 279 (288)
..+-|.|+.|+|||++.+.+........+ -+.++..+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 45668999999999999999877654433 44555433
No 377
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.69 E-value=0.17 Score=47.27 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=30.0
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
.+.++.+.=++++|+.+.|.|+.|.||||+...++.
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 456777766899999999999999999999866654
No 378
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=86.66 E-value=0.35 Score=43.67 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.+-|.|+.|+||||+.+.++...
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999998765
No 379
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=86.61 E-value=0.3 Score=45.29 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|+.++||||+++.|++.
T Consensus 26 ~i~iiG~~~~GKSTLi~~Ll~~ 47 (434)
T 1zun_B 26 RFLTCGNVDDGKSTLIGRLLHD 47 (434)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHhh
Confidence 5789999999999999999754
No 380
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=86.59 E-value=0.43 Score=42.25 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+...+-|.||.|+|||++.+.++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34467799999999999999998764
No 381
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=86.54 E-value=0.29 Score=46.55 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=27.2
Q ss_pred EEEeCCCEEEEEcCCCCChHHH-HHHHhCCCC
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTT-FKMLTGAIK 267 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~-~~~l~G~~~ 267 (288)
+-+.+||..+|.|+.|.||||+ +.+|.....
T Consensus 157 ~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 157 VPIGRGQRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp SCCBTTCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred cccccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 5688999999999999999999 878876654
No 382
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=86.27 E-value=0.46 Score=44.35 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
++..+-|.||.|+||||+.+.++.......--+.+++.++
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~ 101 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGG
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHH
Confidence 4556789999999999999999987654434445555443
No 383
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=85.79 E-value=0.45 Score=44.39 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+.-.++++|..|+||||+++.++|..
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~ 219 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEE 219 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCC
Confidence 44578999999999999999999875
No 384
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=85.55 E-value=0.36 Score=43.98 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q psy7219 244 CFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~ 263 (288)
.++++|+.++||||+++.|+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999998
No 385
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=85.31 E-value=0.54 Score=41.24 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=26.2
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
|..+.|.|+-|.||||+++.+.... |.++++..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~----~~~~~~~~ 63 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER----PGILIDCR 63 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS----SEEEEEHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc----CcEEEEee
Confidence 4688899999999999999987653 46666543
No 386
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=85.16 E-value=0.48 Score=46.90 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=23.3
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
++.||+-+.|.+|||||..-|.+...+.
T Consensus 92 ~~nQsIiisGESGAGKTe~tK~i~~yla 119 (697)
T 1lkx_A 92 QENQCVIISGESGAGKTEASKKIMQFLT 119 (697)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEecCCCCCCchhhHHHHHHHHH
Confidence 3678999999999999999988765443
No 387
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=85.14 E-value=0.46 Score=42.00 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.+-|.|+.|+||||+.+.+....
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 46689999999999999998664
No 388
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=85.06 E-value=0.46 Score=45.09 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=28.7
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHH-HHHHhCC
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTT-FKMLTGA 265 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~-~~~l~G~ 265 (288)
|+|.+ +.+.+||..+|.|..|+||||+ +.+|...
T Consensus 152 aID~l-~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 152 AVDSM-IPIGRGQRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp HHHHH-SCCBTTCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred eeccc-cccccCCEEEeecCCCCCcchHHHHHHHhh
Confidence 44444 6788999999999999999999 7888875
No 389
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=85.01 E-value=0.38 Score=45.02 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
.+-|.||.|+||||+.+.|++....
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3568999999999999999988755
No 390
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.00 E-value=0.45 Score=43.88 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=18.3
Q ss_pred CCEEEEEcCCCCChHHHHHHHh
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
...+.++|++|+||||+++.+.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li 74 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELA 74 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 4577899999999999986554
No 391
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=84.83 E-value=0.21 Score=47.28 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=30.5
Q ss_pred ccceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 229 ~~av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.+.++.+.-++++|+.+.|.|++|+||||+...++-..
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 44666665579999999999999999999987665433
No 392
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.80 E-value=0.29 Score=53.01 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=33.5
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceE-EEcccc
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA-YVMNHS 279 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i-~i~g~~ 279 (288)
++++|+.+-|.|++|+||||+...++.......|.+ ++++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ee 770 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 770 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccc
Confidence 699999999999999999999999877665555544 555543
No 393
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=84.80 E-value=0.48 Score=42.66 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=22.5
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.+...+-|.||.|+||||+.+.++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 344567899999999999999998765
No 394
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=84.45 E-value=0.48 Score=42.51 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=27.3
Q ss_pred EEeCCCEEEEEcCCCCChHHHH-HHHhCCCCC--CCceEEEcccc
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTF-KMLTGAIKP--TSGNAYVMNHS 279 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~-~~l~G~~~p--t~G~i~i~g~~ 279 (288)
++++| .+-|-|+.|+||||+. +++....+. ..--+++++..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 47889 8899999999999994 444333221 22245666543
No 395
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=84.06 E-value=0.51 Score=44.03 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.+.+.|+-|+||||+++.+.....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 888999999999999988775443
No 396
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=84.05 E-value=0.41 Score=41.86 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.+.|.|+.|+||||+.+.+...
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999998653
No 397
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=83.99 E-value=0.37 Score=42.61 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.|..+-|.|+.|+|||++.+.+.....
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 356778999999999999999987654
No 398
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=83.81 E-value=0.51 Score=45.03 Aligned_cols=19 Identities=42% Similarity=0.698 Sum_probs=17.6
Q ss_pred CCCEEEEEcCCCCChHHHH
Q psy7219 241 RGECFGLLGLNGAGKTTTF 259 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~ 259 (288)
+|+...+.|.+|+|||||.
T Consensus 240 ~g~~~lffGlSGtGKTTLs 258 (540)
T 2olr_A 240 KGDVAVFFGLSGTGKTTLS 258 (540)
T ss_dssp TSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEccCCCCHHHHh
Confidence 6789999999999999987
No 399
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=83.67 E-value=0.53 Score=44.91 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=22.1
Q ss_pred ceeeeEEEE-eCCCEEEEEcCCCCChHHHHHH
Q psy7219 231 AVNQISFGV-GRGECFGLLGLNGAGKTTTFKM 261 (288)
Q Consensus 231 av~~is~~v-~~Ge~~gllG~NGaGKTT~~~~ 261 (288)
+.+... .+ ++|+...+.|++|+|||||...
T Consensus 214 ~~H~sa-~~~~~g~~~~ffGlSGtGKTtLs~~ 244 (529)
T 1j3b_A 214 PMHASA-NVGKEGDVAVFFGLSGTGKTTLSTD 244 (529)
T ss_dssp EEECEE-EECTTCCEEEEEECTTSCHHHHTCB
T ss_pred ecccee-eeCCCCcEEEEEccccCChhhHhhc
Confidence 444333 34 5889999999999999997643
No 400
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=83.66 E-value=0.54 Score=44.82 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.7
Q ss_pred eCCCEEEEEcCCCCChHHHHH
Q psy7219 240 GRGECFGLLGLNGAGKTTTFK 260 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~ 260 (288)
+.|+...+.|.+|+|||||..
T Consensus 211 ~~g~~~~ffGlSGtGKTTLs~ 231 (524)
T 1ii2_A 211 KQGDVTVFFGLSGTGKTTLSA 231 (524)
T ss_dssp TTCCEEEEECCTTSSHHHHHC
T ss_pred CCCCEEEEEccCCcchhhhhh
Confidence 578999999999999999863
No 401
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=83.56 E-value=0.58 Score=46.92 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=23.6
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
++.||+-+.|.+|||||..-|.+...+.
T Consensus 138 ~~nQsIiiSGESGAGKTe~tK~i~~yla 165 (784)
T 2v26_A 138 KLSQSIIVSGESGAGKTENTKFVLRYLT 165 (784)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCCceehHHHHHHHHH
Confidence 4789999999999999999998865443
No 402
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=83.41 E-value=0.38 Score=45.32 Aligned_cols=22 Identities=36% Similarity=0.369 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|+.++||||+++.|++.
T Consensus 35 ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 35 SFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp EEEEESCGGGTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5779999999999999999755
No 403
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=83.32 E-value=0.61 Score=46.74 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.7
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
++.||+-+.|.+|||||..-|.+...
T Consensus 169 ~~nQsIiiSGESGAGKTe~tK~im~y 194 (783)
T 4db1_A 169 RENQSILITGESGAGKTVNTKRVIQY 194 (783)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCCchHHHHHHHh
Confidence 57899999999999999999887543
No 404
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=83.28 E-value=0.61 Score=46.84 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=23.2
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
++.||+-+.|.+|||||..-|.+...+
T Consensus 154 ~~nQsIiisGESGAGKTe~tK~i~~yl 180 (795)
T 1w7j_A 154 ERNQSIIVSGESGAGKTVSAKYAMRYF 180 (795)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCcchHHHHHHHHH
Confidence 478999999999999999998876444
No 405
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=83.26 E-value=0.51 Score=45.78 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G 264 (288)
.++++|+.++|||||++.|++
T Consensus 179 ~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 179 HLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp EEEEECCSSSTHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999954
No 406
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=83.21 E-value=0.64 Score=46.44 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.5
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
++.||+-+.|.+|||||..-|.+...
T Consensus 170 ~~nQsIiisGESGAGKTe~tK~i~~y 195 (770)
T 1w9i_A 170 RQNQSLLITGESGAGKTENTKKVIQY 195 (770)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCcchHHHHHHHHH
Confidence 47899999999999999998877543
No 407
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=83.17 E-value=0.51 Score=42.62 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=19.3
Q ss_pred CEEEE--EcCCCCChHHHHHHHhCCC
Q psy7219 243 ECFGL--LGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 243 e~~gl--lG~NGaGKTT~~~~l~G~~ 266 (288)
..+-| .|+.|.||||+.+.+....
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 34555 7999999999999987654
No 408
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=83.11 E-value=0.59 Score=43.49 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|+.++|||||++-|.+.
T Consensus 19 ~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 19 NVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6789999999999999999543
No 409
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.06 E-value=0.57 Score=43.60 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=25.0
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
++++..-+-|-||.|+|||++.+.+++...
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 455666678999999999999999998654
No 410
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.92 E-value=0.73 Score=43.69 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
...+-|.||.|+||||+.+.++...
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3577899999999999999998765
No 411
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=82.91 E-value=0.46 Score=43.48 Aligned_cols=26 Identities=31% Similarity=0.197 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
|-.+.+=|+-||||||+.+.|.....
T Consensus 49 ~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 49 LLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHC---
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34667889999999999999998765
No 412
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=82.72 E-value=0.8 Score=42.61 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=23.6
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.+...+-|.||.|+||||+.+.++...
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 455678899999999999999999876
No 413
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=82.53 E-value=0.83 Score=41.50 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
++..+-|.|+.|+|||++.+.++...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45678899999999999999998654
No 414
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=82.51 E-value=0.86 Score=40.52 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.+-+.|+.|+||||+.+.+.....
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999876543
No 415
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.40 E-value=0.63 Score=43.44 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=25.4
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
++++..-+-|-||.|+|||++.+.+++...
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 466666778999999999999999998754
No 416
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=82.39 E-value=0.72 Score=44.30 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=19.5
Q ss_pred CCCEEEEEcCCCCChHHHHHHHh
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
+-..+||+||-+||||||...|.
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL 52 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLL 52 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEEeCCCCCHHHHHHHHH
Confidence 33478999999999999998873
No 417
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=82.32 E-value=0.78 Score=42.99 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
....-|.|++|.||||+.+.++...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3456799999999999999987653
No 418
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=82.26 E-value=1.1 Score=43.20 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=29.9
Q ss_pred eEEEEeCCCEEEEEcCCCCChHHHHHHHhC----CCCCCCceEEE
Q psy7219 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTG----AIKPTSGNAYV 275 (288)
Q Consensus 235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~G----~~~pt~G~i~i 275 (288)
+.+++.++-...+.|.+|+|||++++.|.. ...|..-++++
T Consensus 207 v~~DL~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lil 251 (574)
T 2iut_A 207 IITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIM 251 (574)
T ss_dssp EEEEGGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred EEEEhhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEE
Confidence 556666788899999999999999987443 34555555443
No 419
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=82.24 E-value=1.1 Score=42.60 Aligned_cols=37 Identities=27% Similarity=0.247 Sum_probs=28.2
Q ss_pred ceeeeEEEEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 231 av~~is~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
+++.+...+..|.-+-|.||.|.|||++.+.|.....
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 3344444455667888999999999999999988663
No 420
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=82.18 E-value=0.86 Score=38.40 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=19.3
Q ss_pred eCCCEEEEEcCCCCChHH-HHHHHh
Q psy7219 240 GRGECFGLLGLNGAGKTT-TFKMLT 263 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT-~~~~l~ 263 (288)
.+|.+.-+.|+-|||||| +++.+-
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~ 50 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLR 50 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 358888999999999999 666653
No 421
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.06 E-value=0.66 Score=43.26 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=25.7
Q ss_pred EEEeCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
+++++..-+-|-||.|+|||++.+.+++...
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 3566666677999999999999999998754
No 422
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=81.83 E-value=0.76 Score=39.93 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.+.+.||.|.||||+.+.+....
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 46789999999999999988653
No 423
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=81.58 E-value=0.76 Score=43.87 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=18.4
Q ss_pred EEe-CC-CEEEEEcCCCCChHHHH
Q psy7219 238 GVG-RG-ECFGLLGLNGAGKTTTF 259 (288)
Q Consensus 238 ~v~-~G-e~~gllG~NGaGKTT~~ 259 (288)
+|. .| +...+.|.+|+|||||.
T Consensus 229 nv~~~g~~~~~ffGlSGtGKTTLs 252 (532)
T 1ytm_A 229 NTDLEGKNTAIFFGLSGTGKTTLS 252 (532)
T ss_dssp EEETTSCSEEEEECCTTSSHHHHH
T ss_pred eeCCCCCeEEEEEecCCCCHHHHh
Confidence 444 56 89999999999999977
No 424
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=81.25 E-value=0.91 Score=39.79 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=25.6
Q ss_pred CEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccc
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~ 278 (288)
..+.|.|+-|.||||+++.+...... ..++++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~--~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNL--PYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC--CEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCC--CEEEEEch
Confidence 48889999999999999988765432 24666544
No 425
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=80.85 E-value=0.82 Score=47.17 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.0
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
.+.||+-+.|.+|||||..-|.+..
T Consensus 170 ~~~QsIiisGESGAGKTe~~K~i~~ 194 (1010)
T 1g8x_A 170 RQNQSLLITGESGAGKTENTKKVIQ 194 (1010)
T ss_dssp TCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCcchHHHHHHH
Confidence 4789999999999999999888653
No 426
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=80.81 E-value=0.72 Score=46.56 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.8
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
.+.||+-+.|.+|||||..-|.+..
T Consensus 167 ~~nQsIiiSGESGAGKTe~tK~i~~ 191 (837)
T 1kk8_A 167 RENQSCLITGESGAGKTENTKKVIM 191 (837)
T ss_dssp TSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCchhhHHHHHH
Confidence 4789999999999999999887653
No 427
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=80.80 E-value=1.3 Score=42.29 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCChHHHHHHHhC-----CCCCCCceEEEc
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTG-----AIKPTSGNAYVM 276 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G-----~~~pt~G~i~i~ 276 (288)
..+++|.|.-|.||||+.+.+.. ....-+|.++++
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~ 191 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK 191 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE
Confidence 35889999999999999999984 223346777774
No 428
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=80.79 E-value=0.83 Score=47.23 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.+.||+-+.|.+|||||...|.+...+.
T Consensus 142 ~~nQsIiiSGESGAGKTestK~im~yLa 169 (1052)
T 4anj_A 142 KLSQSIIVSGESGAGKTENTKFVLRYLT 169 (1052)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999998876554
No 429
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=80.74 E-value=0.83 Score=43.20 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=23.6
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+++...+-|.|++|+|||++.+.+....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4455668899999999999999998765
No 430
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=80.67 E-value=0.82 Score=47.09 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.9
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
.+.||+-+.|.+|||||..-|.+..
T Consensus 144 ~~~QsIiisGESGAGKTe~~K~i~~ 168 (995)
T 2ycu_A 144 REDQSILCTGESGAGKTENTKKVIQ 168 (995)
T ss_dssp CCCEEEEEECBTTSSHHHHHHHHHH
T ss_pred CCCcEEEecCCCCCCchhhHHHHHH
Confidence 4789999999999999999888753
No 431
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=80.39 E-value=0.77 Score=42.96 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCChHHHHHHHhCC
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~G~ 265 (288)
-+++++|+-++|||||++.|.|.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 36889999999999999999753
No 432
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.91 E-value=0.49 Score=43.68 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=27.6
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
+++..-+-|-||.|+|||++.+.+++....+ -+.+++.++
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~--f~~v~~s~l 218 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCK--FIRVSGAEL 218 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTCE--EEEEEGGGG
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCCC--ceEEEhHHh
Confidence 3343446689999999999999999875432 344555443
No 433
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=79.90 E-value=1 Score=43.77 Aligned_cols=23 Identities=35% Similarity=0.284 Sum_probs=19.6
Q ss_pred CCCEEEEEcCCCCChHHHHHHHh
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
.+..+.+.|+.|+||||+++.+.
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll 185 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLL 185 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHH
Confidence 57788899999999999987554
No 434
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=79.77 E-value=0.62 Score=41.11 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEcCCCCChHHHHHHHhCCCC
Q psy7219 245 FGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 245 ~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
+-|.|+.|+|||++.+.+.....
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 66899999999999999986554
No 435
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=79.74 E-value=0.6 Score=47.23 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G 264 (288)
.++++|+.|+||||+++.|.+
T Consensus 21 nI~IiG~~~~GKTTL~~~Ll~ 41 (842)
T 1n0u_A 21 NMSVIAHVDHGKSTLTDSLVQ 41 (842)
T ss_dssp EEEEECCGGGTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999875
No 436
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=79.70 E-value=0.75 Score=43.15 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q psy7219 244 CFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~ 263 (288)
.++++|+.++||||+++.|.
T Consensus 45 ~i~iiG~vd~GKSTLi~~Ll 64 (467)
T 1r5b_A 45 NIVFIGHVDAGKSTLGGNIL 64 (467)
T ss_dssp EEEEEECGGGTHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
Confidence 58899999999999999885
No 437
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=79.65 E-value=1.1 Score=40.62 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=16.8
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q psy7219 244 CFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~ 263 (288)
.+-|||..+|||||++|.+-
T Consensus 34 klLlLG~geSGKST~~KQmk 53 (353)
T 1cip_A 34 KLLLLGAGESGKSTIVKQMK 53 (353)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCchhHHHHHH
Confidence 45689999999999987654
No 438
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.51 E-value=1 Score=39.06 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHhCCC
Q psy7219 245 FGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 245 ~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+.+.|+.|.||||+.+.+....
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6789999999999999887653
No 439
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.44 E-value=0.97 Score=46.98 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=23.7
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.+.||+-+.|.+|||||..-|.+...+.
T Consensus 154 ~~~QsIiisGESGAGKTe~~K~i~~yla 181 (1080)
T 2dfs_A 154 ERNQSIIVSGESGAGKTVSAKYAMRYFA 181 (1080)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCCccchHHHHHHHHH
Confidence 4789999999999999999998865443
No 440
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=79.38 E-value=1 Score=39.00 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHhCCC
Q psy7219 245 FGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 245 ~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+-+.||.|+||||+.+.+....
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 6689999999999999887653
No 441
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=79.36 E-value=1.1 Score=45.17 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=30.0
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
++++..-+-|-||.|+|||++.|.+++..... -+.+++.++
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~elg~~--~~~v~~~~l 274 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEI 274 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE--EEEEEHHHH
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe--EEEEEhHHh
Confidence 44555567799999999999999999986532 345555443
No 442
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=79.15 E-value=0.8 Score=46.28 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
...+.|.|++|+||||+.+.++...
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3456799999999999999998754
No 443
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=78.40 E-value=1.3 Score=37.24 Aligned_cols=21 Identities=19% Similarity=0.072 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCChHHHHHHHh
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~ 263 (288)
-+++|-|+.||||||+-+.|+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la 35 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLA 35 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHH
Confidence 478899999999999999986
No 444
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.16 E-value=0.62 Score=43.80 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=26.5
Q ss_pred EEEeCCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 237 ~~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
+++++..-+-|-||.|+|||++.+.+++....
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~ 269 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRTDA 269 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhccCC
Confidence 45666777889999999999999999987543
No 445
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=78.12 E-value=1.3 Score=43.92 Aligned_cols=27 Identities=33% Similarity=0.278 Sum_probs=22.9
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.++..+-|.|+.|+||||+.+.+....
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 367788899999999999999987643
No 446
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=77.90 E-value=1.2 Score=39.08 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+..+-|.|+.|+|||++.+.+....
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhC
Confidence 4456689999999999999997644
No 447
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=77.55 E-value=1.6 Score=43.69 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.++++|..+|||||+++.|+|..-
T Consensus 53 ~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 53 QIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp EEEEEECTTTCHHHHHHHHHSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCc
Confidence 568999999999999999999653
No 448
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=77.09 E-value=1.3 Score=42.17 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.+..++|.|+-|.||||+.+.+...
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhc
Confidence 3568899999999999999988654
No 449
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=76.58 E-value=1.2 Score=45.11 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=26.5
Q ss_pred CEEEEEcCCCCChHHHHHHHhCCCCCCCc-eEEEccc
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNH 278 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~G~~~pt~G-~i~i~g~ 278 (288)
..+.|.||+|+|||++.+.|........+ -+.++..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~ 625 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 625 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence 47889999999999999999877644332 3444443
No 450
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=75.11 E-value=1.3 Score=46.48 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.++++|+.++||||+++.|++.
T Consensus 298 nIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 298 NVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 451
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.10 E-value=1 Score=41.98 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=28.9
Q ss_pred EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEccccc
Q psy7219 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280 (288)
Q Consensus 238 ~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~i 280 (288)
++++..=+-|-||.|+|||++.+.+++....+ -+.+++.++
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--fi~v~~s~l 252 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--FLRIVGSEL 252 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--EEEEESGGG
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhCCC--EEEEEHHHh
Confidence 45555567799999999999999999875432 234444443
No 452
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=75.05 E-value=2 Score=37.30 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
+.-++.|-||.|+|||++.+.|+..
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3458889999999999999999864
No 453
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=74.51 E-value=1.6 Score=48.19 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=39.7
Q ss_pred cceeeeEE--EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc-eEEEcccccc
Q psy7219 230 PAVNQISF--GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHSIR 281 (288)
Q Consensus 230 ~av~~is~--~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G-~i~i~g~~i~ 281 (288)
+.+|.+.= ++++|+.+-|-|++|+||||+...++.......| -+++.+..-.
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~ 772 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 772 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcH
Confidence 45666664 7999999999999999999999888876655444 5677765533
No 454
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=72.99 E-value=1.8 Score=41.90 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.+-|.|+.|.|||++.+.+....+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCC
Confidence 688999999999999999998764
No 455
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=72.97 E-value=1.5 Score=48.45 Aligned_cols=51 Identities=18% Similarity=0.196 Sum_probs=35.9
Q ss_pred ccceeeeEE--EEeCCCEEEEEcCCCCChHHHHHHHhCCCCCCCc-eEEEcccc
Q psy7219 229 KPAVNQISF--GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHS 279 (288)
Q Consensus 229 ~~av~~is~--~v~~Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G-~i~i~g~~ 279 (288)
.+.+|.+-= ++++|+.+-|.|+.|+||||+...++.......+ -++++...
T Consensus 368 ~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~ 421 (2050)
T 3cmu_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 421 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 345665532 5999999999999999999998777655443333 45555443
No 456
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=72.56 E-value=2.7 Score=39.33 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=18.2
Q ss_pred CEEEEEcCCCCChHHHHHHHh
Q psy7219 243 ECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 243 e~~gllG~NGaGKTT~~~~l~ 263 (288)
-+++++|+-++||||+++.|.
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 377899999999999999664
No 457
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=72.44 E-value=1.2 Score=46.77 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.9
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
.+.||+-+.|.+|||||...|.+..
T Consensus 167 ~~~Q~i~isGeSGaGKTe~~k~~~~ 191 (1184)
T 1i84_S 167 REDQSILCTGESGAGKTENTKKVIQ 191 (1184)
T ss_dssp TCCEEEECCCSTTSSTTHHHHHHHH
T ss_pred CCCcEEEEecCCCCCccHHHHHHHH
Confidence 4789999999999999999988753
No 458
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=72.05 E-value=4.5 Score=35.71 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=28.8
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCCCCCCceEEEcccc
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~~pt~G~i~i~g~~ 279 (288)
+=.+.+=|.-||||+|+++.|+....|-.=.+..-+.+
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~P 123 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKP 123 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCc
Confidence 33667789999999999999999999854444443333
No 459
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=71.08 E-value=2.4 Score=42.10 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=21.9
Q ss_pred eCCCEEEEEcCCCCChHHHHHHHhCCC
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.+...+-|.|+.|+||||+.+.++...
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 344467899999999999999988653
No 460
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=71.03 E-value=2.4 Score=39.55 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=21.2
Q ss_pred EeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 239 VGRGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
.....+..+.|+-|+||||+++-+.-
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 44556778999999999999987764
No 461
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=70.81 E-value=2.4 Score=37.04 Aligned_cols=22 Identities=32% Similarity=0.231 Sum_probs=18.0
Q ss_pred EEEEcCCCCChHHHHHHHhCCC
Q psy7219 245 FGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 245 ~gllG~NGaGKTT~~~~l~G~~ 266 (288)
+-+-||.|.||||+.+.++...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHHT
T ss_pred EEeeCcCCCCHHHHHHHHHHHh
Confidence 3345779999999999998766
No 462
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=70.47 E-value=2.4 Score=42.05 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
.+-+.||.|+|||++.+.+....
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 67899999999999999998655
No 463
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=69.77 E-value=2.5 Score=47.99 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
...+-|+||.|+||||+.++|+.-
T Consensus 923 r~gvmlvGptgsGKTt~~~~La~a 946 (2695)
T 4akg_A 923 QQALILVGKAGCGKTATWKTVIDA 946 (2695)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999998853
No 464
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=69.27 E-value=1.8 Score=34.82 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=15.0
Q ss_pred CCCEEEEEcCCCCChHHHH
Q psy7219 241 RGECFGLLGLNGAGKTTTF 259 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~ 259 (288)
+|+-+.+.+|+|+|||..+
T Consensus 37 ~~~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 37 EGKDLIGQARTGTGKTLAF 55 (207)
T ss_dssp TTCCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCChHHHHH
Confidence 3455778899999999863
No 465
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=69.21 E-value=2.5 Score=41.11 Aligned_cols=22 Identities=36% Similarity=0.360 Sum_probs=17.4
Q ss_pred CCCEEEEEcCCCCChHHHHHHH
Q psy7219 241 RGECFGLLGLNGAGKTTTFKML 262 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l 262 (288)
..+..-|-||.|+|||||+--+
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~ 225 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEI 225 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHH
Confidence 4567789999999999886433
No 466
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=69.02 E-value=3.1 Score=40.40 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCCChHHHHHHHhCCCCC-CCceEEE
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYV 275 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G~~~p-t~G~i~i 275 (288)
+....|.||.|+||||++.-+...... ....|.+
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv 229 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLV 229 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEE
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 567889999999999988665443221 2345544
No 467
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=68.81 E-value=2.8 Score=35.14 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=19.1
Q ss_pred eCCCEEEEEcCCCCChHHHHHHH
Q psy7219 240 GRGECFGLLGLNGAGKTTTFKML 262 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~~~l 262 (288)
.+|.+.-+.|+=|+||||.+--+
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~ 48 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRR 48 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHH
Confidence 46888889999999999877443
No 468
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=68.68 E-value=2.7 Score=41.67 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=25.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCC-CCceEEEcccc
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHS 279 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~p-t~G~i~i~g~~ 279 (288)
.+-+.||+|.|||++.+.+.....- ...-+.++..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSE 559 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechh
Confidence 5889999999999999999876422 22344554433
No 469
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=68.50 E-value=2.9 Score=45.39 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=29.2
Q ss_pred ccceeeeEE--EEeCCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 229 KPAVNQISF--GVGRGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 229 ~~av~~is~--~v~~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
.+.+|.+-= ++++|+.+-|.|+.|+||||+...++..
T Consensus 368 i~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 345666642 5999999999999999999998766543
No 470
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=68.41 E-value=2.9 Score=38.44 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=16.9
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q psy7219 244 CFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~ 263 (288)
.+-|||.-.+||||++|.+-
T Consensus 42 klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 42 RLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred eEEEecCCCCchhhHHHHHH
Confidence 46689999999999997763
No 471
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=68.14 E-value=3.2 Score=36.00 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
++.++++.|.-|.||||+.-.|+....
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La 66 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFS 66 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHH
Confidence 466788889999999999877765443
No 472
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=64.95 E-value=1.9 Score=34.75 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=18.6
Q ss_pred CCCEEEEEcCCCCChHHHHHHHh
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
+|+.+-+.+++|+|||...-...
T Consensus 47 ~~~~~li~~~tGsGKT~~~~~~~ 69 (216)
T 3b6e_A 47 EGKNIIICLPTGSGKTRVAVYIA 69 (216)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCCHHHHHHHHH
Confidence 46678899999999999876554
No 473
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=63.94 E-value=3.2 Score=33.33 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=15.2
Q ss_pred CCCEEEEEcCCCCChHHHHH
Q psy7219 241 RGECFGLLGLNGAGKTTTFK 260 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~ 260 (288)
+|+-+.+.+|+|+|||..+-
T Consensus 39 ~~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 39 SGRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TTCCEEEECCSSSTTHHHHH
T ss_pred cCCCEEEECCCCCchHHHHH
Confidence 34556789999999997543
No 474
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=63.82 E-value=4.3 Score=40.73 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCCChHHHHHHHhC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
+....|.|+.|+||||++..+..
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~ 393 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVY 393 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 56788999999999998776543
No 475
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=63.54 E-value=3.5 Score=34.04 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=15.3
Q ss_pred CCCEEEEEcCCCCChHHHH
Q psy7219 241 RGECFGLLGLNGAGKTTTF 259 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~ 259 (288)
.|+-+-+.+++|+|||..+
T Consensus 61 ~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 61 QGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp TTCCEEEECCTTSCHHHHH
T ss_pred CCCCEEEEeCCCCcHHHHH
Confidence 4556778999999999964
No 476
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=62.82 E-value=3.3 Score=39.85 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=15.3
Q ss_pred CCEEEEEcCCCCChHHHHH
Q psy7219 242 GECFGLLGLNGAGKTTTFK 260 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~ 260 (288)
+..+-++|+-|+||||++-
T Consensus 22 ~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp SSCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHH
Confidence 3445689999999999873
No 477
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.49 E-value=3.6 Score=47.44 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~~ 267 (288)
.+-|+||.|+||||..++|..-..
T Consensus 908 GvmlVGp~gsGKTt~~~~L~~al~ 931 (3245)
T 3vkg_A 908 GVMMVGPSGGGKTTSWEVYLEAIE 931 (3245)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 466999999999999999875443
No 478
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=62.43 E-value=1.3 Score=39.07 Aligned_cols=21 Identities=10% Similarity=-0.145 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G 264 (288)
..-+-||.|.||||+.+.++.
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 20 SILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp EEEEECSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 566899999999999999964
No 479
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=61.98 E-value=3 Score=40.95 Aligned_cols=20 Identities=30% Similarity=0.268 Sum_probs=17.5
Q ss_pred eCCCEEEEEcCCCCChHHHH
Q psy7219 240 GRGECFGLLGLNGAGKTTTF 259 (288)
Q Consensus 240 ~~Ge~~gllG~NGaGKTT~~ 259 (288)
..|+.+-+.||+|+|||+..
T Consensus 44 ~~~~~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIA 63 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHH
T ss_pred cCCCcEEEEcCCCCcHHHHH
Confidence 35788889999999999987
No 480
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=61.80 E-value=4.5 Score=32.96 Aligned_cols=19 Identities=37% Similarity=0.436 Sum_probs=15.0
Q ss_pred CCCEEEEEcCCCCChHHHH
Q psy7219 241 RGECFGLLGLNGAGKTTTF 259 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~ 259 (288)
+|.-+-+.+|+|+|||..+
T Consensus 50 ~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 50 EGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred cCCCEEEECCCCCcHHHHH
Confidence 3455678999999999873
No 481
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=61.76 E-value=4.5 Score=33.19 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=15.7
Q ss_pred CCCEEEEEcCCCCChHHHHH
Q psy7219 241 RGECFGLLGLNGAGKTTTFK 260 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~ 260 (288)
+|+-+-+.+|+|+|||..+-
T Consensus 56 ~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 56 QGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TTCCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCChHHHHHH
Confidence 45566789999999998643
No 482
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=61.63 E-value=3.8 Score=36.21 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q psy7219 244 CFGLLGLNGAGKTTTFKMLTGAI 266 (288)
Q Consensus 244 ~~gllG~NGaGKTT~~~~l~G~~ 266 (288)
..-+.||.|.||||+.+.++...
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCchHHHHHHHHHHHH
Confidence 35688999999999998887543
No 483
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=61.37 E-value=2.3 Score=39.59 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=17.2
Q ss_pred EeCCCEEEEEcCCCCChHHH
Q psy7219 239 VGRGECFGLLGLNGAGKTTT 258 (288)
Q Consensus 239 v~~Ge~~gllG~NGaGKTT~ 258 (288)
+.+|+.+-+.+|+|+|||+.
T Consensus 18 l~~~~~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 18 LRKRQMTVLDLHPGSGKTRK 37 (459)
T ss_dssp GSTTCEEEECCCTTSCTTTT
T ss_pred HhcCCcEEEECCCCCCHHHH
Confidence 34688888999999999996
No 484
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=61.10 E-value=5.9 Score=33.16 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=19.0
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGA 265 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~ 265 (288)
+++...+.|+.|+|||.+.-.+.-.
T Consensus 107 ~~~~~ll~~~tG~GKT~~a~~~~~~ 131 (237)
T 2fz4_A 107 VDKRGCIVLPTGSGKTHVAMAAINE 131 (237)
T ss_dssp TTSEEEEEESSSTTHHHHHHHHHHH
T ss_pred hCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 4455778999999999988665543
No 485
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=59.50 E-value=6.3 Score=32.43 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=17.7
Q ss_pred CCCEEEEEcCCCCChHH-HHHHH
Q psy7219 241 RGECFGLLGLNGAGKTT-TFKML 262 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT-~~~~l 262 (288)
.|+..-+.|+-|||||| +++.+
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i 41 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRV 41 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHH
Confidence 58888899999999995 45544
No 486
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=59.43 E-value=5.8 Score=39.81 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCCChHHHHHHHh
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLT 263 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~ 263 (288)
+....|.||.|+||||++..+.
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i 396 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIV 396 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 5678899999999999876553
No 487
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=59.22 E-value=3.6 Score=34.64 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=15.8
Q ss_pred CCCEEEEEcCCCCChHHHH
Q psy7219 241 RGECFGLLGLNGAGKTTTF 259 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~ 259 (288)
+|+-+.+.+++|+|||..+
T Consensus 79 ~~~~~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 79 QGRDIIGLAETGSGKTGAF 97 (249)
T ss_dssp TTCCEEEECCTTSCHHHHH
T ss_pred CCCCEEEEcCCCCCchhHh
Confidence 5666778999999999864
No 488
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=57.87 E-value=5.9 Score=34.10 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=17.2
Q ss_pred CCCEEEEEcCCCCChHHHHHHH
Q psy7219 241 RGECFGLLGLNGAGKTTTFKML 262 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l 262 (288)
+|+-+.+.+|+|+|||..+-+.
T Consensus 30 ~~~~~lv~~~TGsGKT~~~~~~ 51 (337)
T 2z0m_A 30 QGKNVVVRAKTGSGKTAAYAIP 51 (337)
T ss_dssp TTCCEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEcCCCCcHHHHHHHH
Confidence 4566778999999999876444
No 489
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=56.82 E-value=4.2 Score=33.77 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=14.9
Q ss_pred CCCEEEEEcCCCCChHHH
Q psy7219 241 RGECFGLLGLNGAGKTTT 258 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~ 258 (288)
+|+-+-+.+|+|+|||..
T Consensus 65 ~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 65 HGRELLASAPTGSGKTLA 82 (245)
T ss_dssp TTCCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 455677899999999986
No 490
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=55.90 E-value=7.2 Score=34.36 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=20.7
Q ss_pred eEEEEeCCCEEEEEcCCCCChHHHHHHHhC
Q psy7219 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 235 is~~v~~Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
-+..|..-.++++-|.=|-||||+--.|+-
T Consensus 41 ~~~~i~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 41 EADKITGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp ------CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCCCCceEEEEECCCccCHHHHHHHHHH
Confidence 445566677999999999999999876653
No 491
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=54.62 E-value=5.4 Score=32.84 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=15.4
Q ss_pred CCCEEEEEcCCCCChHHHH
Q psy7219 241 RGECFGLLGLNGAGKTTTF 259 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~ 259 (288)
+|+-+-+.+++|+|||..+
T Consensus 60 ~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 60 CGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4566778999999999863
No 492
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=54.19 E-value=4.8 Score=39.52 Aligned_cols=19 Identities=21% Similarity=0.069 Sum_probs=17.0
Q ss_pred CCCEEEEEcCCCCChHHHH
Q psy7219 241 RGECFGLLGLNGAGKTTTF 259 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~ 259 (288)
.|+.+-+.||+|+|||+..
T Consensus 38 ~~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIA 56 (720)
T ss_dssp GTCEEEEECCGGGCHHHHH
T ss_pred CCCcEEEEcCCccHHHHHH
Confidence 4788899999999999886
No 493
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=53.67 E-value=7.9 Score=31.37 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=14.7
Q ss_pred CCEEEEEcCCCCChHHHHH
Q psy7219 242 GECFGLLGLNGAGKTTTFK 260 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~ 260 (288)
|+-+.+.+++|+|||..+-
T Consensus 51 ~~~~li~~~TGsGKT~~~~ 69 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKTAVFV 69 (220)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCCchhhhhh
Confidence 3446688999999998553
No 494
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=53.57 E-value=5.1 Score=33.45 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=15.0
Q ss_pred CCCEEEEEcCCCCChHHHH
Q psy7219 241 RGECFGLLGLNGAGKTTTF 259 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~ 259 (288)
+|+-+.+.+++|+|||..+
T Consensus 59 ~~~~~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 59 EHRDIMACAQTGSGKTAAF 77 (253)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCCEEEECCCCChHHHHH
Confidence 4555778899999999854
No 495
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=53.06 E-value=6.1 Score=38.83 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=15.8
Q ss_pred CCCEEEEEcCCCCChHHH
Q psy7219 241 RGECFGLLGLNGAGKTTT 258 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~ 258 (288)
+|+.+-+.||+|+|||+.
T Consensus 154 ~rk~vlv~apTGSGKT~~ 171 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYH 171 (677)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 577888999999999994
No 496
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=53.00 E-value=7.1 Score=40.70 Aligned_cols=23 Identities=22% Similarity=0.086 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCChHHHHHHHhC
Q psy7219 242 GECFGLLGLNGAGKTTTFKMLTG 264 (288)
Q Consensus 242 Ge~~gllG~NGaGKTT~~~~l~G 264 (288)
..+++|.|+-|.||||+.+.+..
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHH
Confidence 46899999999999999998864
No 497
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=52.70 E-value=6.2 Score=32.76 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.6
Q ss_pred CCCEEEEEcCCCCChHHHH
Q psy7219 241 RGECFGLLGLNGAGKTTTF 259 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~ 259 (288)
+|+-+-+.+|+|+|||..+
T Consensus 65 ~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 65 SGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp HTCCEEEEECTTSCHHHHH
T ss_pred CCCCEEEECCCcCHHHHHH
Confidence 4666778899999999874
No 498
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=51.80 E-value=4.5 Score=40.61 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhCCCCC
Q psy7219 241 RGECFGLLGLNGAGKTTTFKMLTGAIKP 268 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~~~l~G~~~p 268 (288)
+..-+-|-||.|+|||.+.+.++++...
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCC
Confidence 3334668999999999999999988653
No 499
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=51.60 E-value=3.9 Score=33.98 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=15.1
Q ss_pred CCCEEEEEcCCCCChHHHH
Q psy7219 241 RGECFGLLGLNGAGKTTTF 259 (288)
Q Consensus 241 ~Ge~~gllG~NGaGKTT~~ 259 (288)
+|+-+-+.+++|+|||..+
T Consensus 66 ~~~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 66 KGYDVIAQAQSGTGKTATF 84 (237)
T ss_dssp TTCCEEECCCSSHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4555678899999999874
No 500
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=50.61 E-value=7.2 Score=33.45 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=19.7
Q ss_pred CCEEEEEc---CCCCChHHHHHHHhCCCC
Q psy7219 242 GECFGLLG---LNGAGKTTTFKMLTGAIK 267 (288)
Q Consensus 242 Ge~~gllG---~NGaGKTT~~~~l~G~~~ 267 (288)
+.++++.+ .-|.||||+.-.|+....
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la 62 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTD 62 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHH
Confidence 45677776 889999999888775543
Done!