RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7219
(288 letters)
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 255 bits (652), Expect = 2e-77
Identities = 129/289 (44%), Positives = 186/289 (64%), Gaps = 9/289 (3%)
Query: 2 YSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSV 61
+ +D++ Y S+ LVV IF+ F+++AY SP+NLP LVALL+ YG AVIP+MYP SF+F V
Sbjct: 1728 FLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFDV 1787
Query: 62 PSTAFVVLGCFNLFVGLITTLTVTVLDNLQDD-TLEYVNQYLKVIFLIFPHFCLGEGLMK 120
PSTA+V L C NLF+G+ ++ VL+ +++ TL N L+ + ++FPHFCLG GL+
Sbjct: 1788 PSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLID 1847
Query: 121 LANTYWTSSFANSYGTRLVAVNIWAWRMIGKNLTCMACHGALYSAINLSIEYKVFSRCFT 180
LA + + +G A N + W +IGKNL MA G +Y + L I++ F +
Sbjct: 1848 LALSQAVTDVYAQFGEEHSA-NPFQWDLIGKNLVAMAVEGVVYFLLTLLIQHHFF---LS 1903
Query: 181 R--SNPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFG 238
R + P P+ E+DDV +ER+R+ G + D+L + L K+Y+ + + PAV+++ G
Sbjct: 1904 RWIAEPAKEPIFDEDDDVAEERQRIISGGNKTDILRLNELTKVYSGT--SSPAVDRLCVG 1961
Query: 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV 287
V GECFGLLG+NGAGKTTTFKMLTG TSG+A V SI ++ V
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDV 2010
Score = 55.8 bits (134), Expect = 1e-08
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
VK L KI+ S +PAV++++ + LG NGAGKTTT +LTG + PTSG
Sbjct: 931 VKNLVKIFEPSG--RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVL 988
Query: 275 VMNHSIRDSMDLVR 288
V I ++D VR
Sbjct: 989 VGGKDIETNLDAVR 1002
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 109 bits (275), Expect = 5e-29
Identities = 42/76 (55%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
L ++ L K Y K TKPAV+ +S V +GE FGLLG NGAGKTTT KMLTG ++PTSG
Sbjct: 1 LQIRNLTKTY--KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT 58
Query: 273 AYVMNHSIRDSMDLVR 288
AY+ +SIR R
Sbjct: 59 AYINGYSIRTDRKAAR 74
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 93.2 bits (233), Expect = 3e-23
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+ V+ L K Y K A++ IS V +GE +GLLG NGAGKTT K++ G +KP SG
Sbjct: 1 IEVRNLSKRY----GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE 56
Query: 273 AYVMNHSIRDSMDLVR 288
V+ I+ + V+
Sbjct: 57 IKVLGKDIKKEPEEVK 72
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 91.2 bits (227), Expect = 2e-21
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
V+ V+ L K Y K A++ +SF V GE FGLLG NGAGKTT K+L G +KPTSG
Sbjct: 4 VIEVRNLTKKY---GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60
Query: 272 NAYVMNHSIRDSMDLVR 288
V+ + + VR
Sbjct: 61 EILVLGYDVVKEPAKVR 77
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 82.0 bits (203), Expect = 1e-18
Identities = 39/76 (51%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+ V+ L K Y AV +SF V RGE FGLLG NGAGKTTT KMLT +KPTSG
Sbjct: 1 IEVENLVKKY----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGR 56
Query: 273 AYVMNHSIRDSMDLVR 288
A V H + VR
Sbjct: 57 ATVAGHDVVREPREVR 72
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 75.1 bits (185), Expect = 6e-16
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 191 LEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGL 250
+E ++ K + G + +K LFK A+ ISF + +GE G +G
Sbjct: 1 IEVSNLSKSYRVYSKEP--GLIGSLKSLFK---RKYREVEALKGISFTIEKGEIVGFIGP 55
Query: 251 NGAGKTTTFKMLTGAIKPTSGNAYVM 276
NGAGKTTT K+L+G ++PTSG V
Sbjct: 56 NGAGKTTTLKILSGLLQPTSGEVRVA 81
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 74.3 bits (183), Expect = 2e-15
Identities = 29/59 (49%), Positives = 37/59 (62%)
Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
AV+ ++F V GE FG LG NGAGKTTT +MLT ++PTSG A V + + VR
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVR 65
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 73.3 bits (181), Expect = 2e-15
Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
L + L K Y + VN +S V +GE GLLG NGAGKTTTF M+ G +KP SG
Sbjct: 1 LRAENLSKRYGK----RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK 56
Query: 273 AYVMNHSI 280
+ I
Sbjct: 57 ILLDGQDI 64
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 72.6 bits (179), Expect = 5e-15
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
LV + L K Y + VN +S V GE GLLG NGAGKTTTF M+ G ++P SG
Sbjct: 4 TLVAENLAKSY----KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 71.2 bits (175), Expect = 8e-15
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
L V+ + K + A++ ISF V +GE FGLLG NGAGKTTT +M+ G I P SG
Sbjct: 1 LEVENVTKRFG----RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE 56
Query: 273 AYVMNHSI 280
+
Sbjct: 57 VLFDGKPL 64
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 71.2 bits (175), Expect = 8e-15
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+ L K + + K T AV+ +SF V GE GLLG NGAGKTTT +ML G ++P +G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 273 AYV 275
A V
Sbjct: 62 ATV 64
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 69.2 bits (170), Expect = 4e-14
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
K ++ IS V +GE +G LG NGAGKTTT K++ G IKP SG
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG 55
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 68.6 bits (169), Expect = 1e-13
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
A++ +SF V GE GL+G NGAGKTT F +++G ++PTSG
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSG 55
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 69.4 bits (170), Expect = 1e-13
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+ V L K+Y T+ A++++SF +G G LG NGAGK+TT K++TG + P SG+
Sbjct: 3 IRVSSLTKLYG----TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGS 58
Query: 273 AYVMNHSI-RDSMDLVR 288
V + ++ ++ R
Sbjct: 59 VQVCGEDVLQNPKEVQR 75
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 68.2 bits (167), Expect = 2e-13
Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+L V L K Y AV +SF GE GLLG NGAGKTT +M+ + P SG
Sbjct: 1 MLEVTDLTKSY---GSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSG 57
Query: 272 NAYVMNHSIRDSMDLVR 288
+ D +D VR
Sbjct: 58 KVTI------DGVDTVR 68
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 68.2 bits (167), Expect = 3e-13
Identities = 28/45 (62%), Positives = 33/45 (73%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
K AV+ ISF V GE FGLLG NGAGKTTTF+M+ G ++PT G
Sbjct: 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEG 57
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 67.0 bits (164), Expect = 3e-13
Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
L K L K + + AVN IS V + +GLLG NGAGK+T KM+TG ++PTSG
Sbjct: 1 LETKNLSKRFGK----QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGE 56
Query: 273 AYVMNH 278
H
Sbjct: 57 IIFDGH 62
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 67.6 bits (166), Expect = 3e-13
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 209 SGDVLVVKRLFKIYANSK-----DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 263
+L VK L K + K AV+ +SF + GE GL+G +G GK+T +++
Sbjct: 1 MEPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL 60
Query: 264 GAIKPTSGNAYVMNHSIRD 282
G +PTSG I
Sbjct: 61 GLEEPTSGEILFEGKDITK 79
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 65.5 bits (161), Expect = 3e-13
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
L ++ + K + K A++ +S V RGE LLG NGAGK+T K+L+G KP SG
Sbjct: 1 LELRGITKRFGGVK----ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE 56
Query: 273 AY-----VMNHSIRDSMDL 286
V S RD+
Sbjct: 57 ILVDGKEVSFASPRDARRA 75
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 68.0 bits (167), Expect = 8e-13
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 182 SNP-HPVPVSL-----EEDDVRKERERVERGADSGDVLVVKRLFKIYANSKD-------T 228
SNP HP L D + R + +L V+ L K Y + K
Sbjct: 244 SNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGE 303
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278
AV+ +SF + GE GL+G +G+GK+T ++L G + P+SG+
Sbjct: 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQ 353
Score = 47.2 bits (113), Expect = 5e-06
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264
+L V+ L +A PAV +SF V GE G++G +G+GK+T L G
Sbjct: 2 MSPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMG 57
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 63.8 bits (156), Expect = 2e-12
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
+ A++ +S + GE L+G NG+GK+T + + G +KPTSG + I
Sbjct: 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK 65
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 66.3 bits (162), Expect = 2e-12
Identities = 26/51 (50%), Positives = 33/51 (64%)
Query: 221 IYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+ + + AV ISF + +GE G LG NGAGK+TT KMLTG + PTSG
Sbjct: 29 FFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG 79
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 66.0 bits (161), Expect = 2e-12
Identities = 27/60 (45%), Positives = 34/60 (56%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
K VN +SF V GECFGLLG NGAGK+T +M+ G P +G V+ + L R
Sbjct: 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLAR 113
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 64.1 bits (157), Expect = 4e-12
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+L VK L + + A++ +SF + +GE GL+G +G+GK+T + + G +KPTSG
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 272 NAYVMNHSI 280
+ +
Sbjct: 61 SIIFDGKDL 69
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 64.4 bits (157), Expect = 5e-12
Identities = 27/43 (62%), Positives = 31/43 (72%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
K V+ +SF V RGECFGLLG NGAGKTTT +ML G P +G
Sbjct: 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG 62
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 62.5 bits (153), Expect = 6e-12
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
+ ++ +S + GE G+LG NGAGK+T K L G +KP+SG + +
Sbjct: 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS 65
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 63.4 bits (155), Expect = 8e-12
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
A+ ISF + +GE G++G NGAGK+T K++ G KPTSG V
Sbjct: 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV 86
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 63.1 bits (154), Expect = 1e-11
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
L V L Y + A++ +SF V G LLG NGAGK+T F +LT G
Sbjct: 2 LEVAGLSFRYG----ARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 273 AYVMNHSIR 281
V H +R
Sbjct: 58 ISVAGHDLR 66
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 62.5 bits (153), Expect = 1e-11
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+ +K L K Y + A+ +S + +GE ++G +G+GK+T +L G +PTSG
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 273 AYVMNHSIRD 282
V I
Sbjct: 61 VRVDGTDISK 70
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 63.0 bits (154), Expect = 1e-11
Identities = 25/50 (50%), Positives = 30/50 (60%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
AVN +S V GE GL+G NGAGKTT F ++TG KP+SG I
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDI 68
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 63.3 bits (154), Expect = 3e-11
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 195 DVRKERERVERGADSGDVLVVKRLFKIYAN-SKDTKPAVNQISFGVGRGECFGLLGLNGA 253
+V KE E VE G ++ V+ + K Y + + AV+ +S V GE FG++G +GA
Sbjct: 266 EVEKECE-VEVGEP---IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGA 321
Query: 254 GKTTTFKMLTGAIKPTSGNAYV 275
GKTT K++ G ++PTSG V
Sbjct: 322 GKTTLSKIIAGVLEPTSGEVNV 343
Score = 39.4 bits (92), Expect = 0.002
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSG 271
D K + ISF + GE G+LG +GAGK+ +L G +PTSG
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 61.4 bits (150), Expect = 3e-11
Identities = 23/61 (37%), Positives = 29/61 (47%)
Query: 216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
K A+ +SF V RGE GL+G NGAGK+T ++L G P SG V
Sbjct: 22 KLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV 81
Query: 276 M 276
Sbjct: 82 R 82
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 61.9 bits (150), Expect = 5e-11
Identities = 29/60 (48%), Positives = 35/60 (58%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
K VN +SF + RGECFGLLG NGAGK+T +ML G I P G V+ + L R
Sbjct: 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 60.3 bits (147), Expect = 6e-11
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
L ++ L K Y + A++ +S +G G +GLLG NGAGKTT ++L P+SG
Sbjct: 1 LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGT 55
Query: 273 AYVMNHSIRDSMDLVR 288
+ + +R
Sbjct: 56 IRIDGQDVLKQPQKLR 71
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 62.1 bits (152), Expect = 6e-11
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-----AYVMNHSIRDSM 284
A++ +S V GE LLG NGAGK+T K+L+G P SG V S RD++
Sbjct: 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81
Query: 285 DL 286
Sbjct: 82 AA 83
Score = 45.6 bits (109), Expect = 1e-05
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 13/97 (13%)
Query: 195 DVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAG 254
++ VL V+ L V +SF V GE G+ GL GAG
Sbjct: 246 ELEDLFPEPPEEGIGEPVLEVRNL--------SGGGKVRDVSFTVRAGEILGIAGLVGAG 297
Query: 255 KTTTFKMLTGAIKPTSGNAY-----VMNHSIRDSMDL 286
+T + L GA +SG V S RD++
Sbjct: 298 RTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 60.7 bits (148), Expect = 7e-11
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SM 284
KP ++ +SF + +GE G+LG NG+GK+T K L G +KP SG + I
Sbjct: 13 GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPK 72
Query: 285 DLVR 288
+L +
Sbjct: 73 ELAK 76
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 60.3 bits (147), Expect = 8e-11
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+ V+ L K Y N K A+ +S + GE L+G +GAGK+T + L G ++PTSG+
Sbjct: 1 IEVENLSKTYPNGK---KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGS 57
Query: 273 AYVMNHSIR 281
+ I
Sbjct: 58 VLIDGTDIN 66
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 60.0 bits (146), Expect = 2e-10
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
L V+ L +Y K A+N +S + RGE G++G +G+GK+T ++L G KP+SG+
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 273 AYV 275
+
Sbjct: 64 ILL 66
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 59.0 bits (144), Expect = 2e-10
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 226 KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 283
+PA++ IS + +GE ++G NG+GK+T ++L G + PTSG V +
Sbjct: 11 DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKL 68
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 59.2 bits (144), Expect = 4e-10
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
+ + K Y N K AV+ ++ + GE L+G +G+GKTTT KM+ I+PTSG +
Sbjct: 5 ENVSKRYGN----KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60
Query: 276 MNHSIRDSMDLVR 288
I D +D V
Sbjct: 61 DGEDISD-LDPVE 72
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 58.2 bits (142), Expect = 4e-10
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+ +S V GE LLG NGAGKTT K + G + P SG
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG 55
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 58.0 bits (141), Expect = 5e-10
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
++ + L Y K A+ +S + +GE L+G NG+GK+T K+L G +KPTSG
Sbjct: 3 MIEAENLSFRY---PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG 59
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 57.5 bits (140), Expect = 7e-10
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+L V+ L Y A+ +S V RGE LLG NGAGKTT K + G ++P SG
Sbjct: 3 MLEVENLSAGYGKI----QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSG 58
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 55.9 bits (136), Expect = 8e-10
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+ ++ L K Y K + IS + G+ GL+G NGAGK+T K++ G ++P G
Sbjct: 1 IELENLSKTYGG----KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG 55
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 57.7 bits (140), Expect = 9e-10
Identities = 22/41 (53%), Positives = 25/41 (60%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
AVN ++ V E L+G NGAGKTT F LTG KPT G
Sbjct: 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG 60
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 57.1 bits (139), Expect = 9e-10
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
L +K L K Y + A++ +S V GE LLG +G GKTT +++ G +P SG
Sbjct: 1 LELKGLSKTYGS----VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSG 55
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 57.2 bits (139), Expect = 9e-10
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
+K + K++ ++ A+ +S V +GE FG++G +GAGK+T + + G +PTSG+
Sbjct: 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63
Query: 275 VMNHSI 280
V +
Sbjct: 64 VDGTDL 69
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 57.1 bits (139), Expect = 1e-09
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
L V+ + K Y A+ IS V GE L+G +G GK+T +++ G +PTSG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 273 AYVMNHSIRD 282
V +
Sbjct: 61 VLVDGEPVTG 70
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 56.9 bits (138), Expect = 1e-09
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
++ VK L K Y A+ ++ + +GE ++G +GAGK+T + L G + PTSG
Sbjct: 3 MIEVKNLSKTYPGGH---QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG 59
Query: 272 NAYVMNHSI 280
I
Sbjct: 60 EILFNGVQI 68
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 56.5 bits (137), Expect = 2e-09
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+ ++ + K Y A++ +S + GE F LLG +G GKTT +++ G PTSG
Sbjct: 1 IELENVSKFY----GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGE 56
Query: 273 AYVMNHSI 280
+ I
Sbjct: 57 ILLDGKDI 64
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 57.2 bits (138), Expect = 2e-09
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
K VN + +GE F ++GL+G+GK+TT +ML I+PT+G ++
Sbjct: 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFI 52
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 55.2 bits (134), Expect = 4e-09
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
P + +SF V GE ++G NGAGK+T K + G +KPTSG+ V
Sbjct: 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 55.7 bits (135), Expect = 4e-09
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
VN +S V GE F ++GL+G+GK+T + + I+PTSG +
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLI 83
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 56.5 bits (137), Expect = 4e-09
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
++ ++ L Y +P + +S + GE GL+G NGAGK+T K+L G ++P SG
Sbjct: 3 MITLENLSLAY----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSG 58
Query: 272 N 272
Sbjct: 59 E 59
Score = 56.5 bits (137), Expect = 5e-09
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 192 EEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLN 251
EE R VL + + K Y + + +SF + RG+ ++G N
Sbjct: 301 EEGKPLAFRFPPPGKRLGKLVLEFENVSKGY---DGGRLLLKDLSFRIDRGDRIAIVGPN 357
Query: 252 GAGKTTTFKMLTGAIKPTSG 271
GAGK+T K+L G + P SG
Sbjct: 358 GAGKSTLLKLLAGELGPLSG 377
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 56.4 bits (137), Expect = 5e-09
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
A + +S V +GE LLG NGAGK+T K+L G +P SG V
Sbjct: 19 ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRV 63
Score = 37.1 bits (87), Expect = 0.008
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 195 DVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAG 254
+R + G VL V+ L + AV +SF V GE G+ G+ G G
Sbjct: 243 VLRVVKPPSTPGEV---VLEVEDL-SVKDR--RGVTAVKDVSFEVRAGEIVGIAGVAGNG 296
Query: 255 KTTTFKMLTGAIKPTSGNAYVMNHSIR 281
++ + ++G KP SG + +
Sbjct: 297 QSELVEAISGLRKPASGRILLNGKDVL 323
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 55.4 bits (134), Expect = 7e-09
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
L ++ + K + AV+ IS + +GE LLG +G GKTT +M+ G +P+SG
Sbjct: 5 ALEIRNVSKSF----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 54.6 bits (132), Expect = 9e-09
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+L V+ L K+Y N K A+ I+ + GE ++G +GAGK+T + + ++P+SG
Sbjct: 1 MLEVENLSKVYPNGKQ---ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSG 57
Query: 272 NAYVMNHSIRD 282
+ + I
Sbjct: 58 SILLEGTDITK 68
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 54.2 bits (131), Expect = 1e-08
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 226 KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 285
K AVN ++ + +GE L+G +G+GKTTT KM+ I+PTSG ++ IR+ D
Sbjct: 11 GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIRE-QD 69
Query: 286 LVR 288
V
Sbjct: 70 PVE 72
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 54.5 bits (132), Expect = 1e-08
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
+P + IS V +GE L+G NGAGK+T K + G +KP+SG + +R
Sbjct: 15 GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRK 70
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 54.2 bits (131), Expect = 1e-08
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281
++ K + +S+ V GE + ++G NGAGKTT +LTG P+SG+ ++
Sbjct: 40 RRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFG 96
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 53.3 bits (129), Expect = 1e-08
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
L +K + K Y K +N +S + GE LLG +G+GK+T + + G +P SG+
Sbjct: 1 LELKNVSKRYGQ----KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS 56
Query: 273 AYV 275
+
Sbjct: 57 ILI 59
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 53.7 bits (130), Expect = 1e-08
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
++ +K + KIY + A+ ++ + GE ++G +G+GK+T +L G KPTSG
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 272 NAYVMNHSIRD 282
+ +
Sbjct: 61 EVLINGKDLTK 71
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 54.1 bits (131), Expect = 1e-08
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281
A+N +S V GE ++G NGAGKTT ++TG +P G+ +
Sbjct: 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLT 67
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 54.6 bits (132), Expect = 2e-08
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
L V+RL K KP + ISF + GE G++G +G+GK+T ++L G PTSG
Sbjct: 334 ALSVERLTAAPPGQK--KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG 391
Query: 272 NAYVMNHSIR-DSMDL 286
S+R D DL
Sbjct: 392 -------SVRLDGADL 400
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 52.8 bits (127), Expect = 2e-08
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
++F RGE LLG NGAGK+T L G ++P SG
Sbjct: 11 LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSG 47
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 52.0 bits (126), Expect = 3e-08
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
KP + +S + GE ++G +G+GK+T K+L PTSG + +RD
Sbjct: 13 RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRD 68
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 53.1 bits (128), Expect = 3e-08
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 222 YANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI- 280
++ A+ +SF + GE +LG NG+GK+T K+LTG +KP SG + +I
Sbjct: 15 FSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITIS 74
Query: 281 RDSMDLVR 288
++++ +R
Sbjct: 75 KENLKEIR 82
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 53.8 bits (130), Expect = 3e-08
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 16/86 (18%)
Query: 210 GD-VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268
GD V+ + L K + K ++ +SF + G G++G NGAGK+T F+M+TG +P
Sbjct: 319 GDKVIEAENLSKGF----GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP 374
Query: 269 TSGN---------AYVMNHSIRDSMD 285
SG AYV RD++D
Sbjct: 375 DSGTIKIGETVKLAYV--DQSRDALD 398
Score = 36.4 bits (85), Expect = 0.015
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+ + R+ K+ K + IS G G+LGLNGAGK+T +++ G K +G
Sbjct: 4 IYTMNRVSKVVPP---KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNG 60
Query: 272 NAYVM 276
A
Sbjct: 61 EARPA 65
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 53.4 bits (129), Expect = 4e-08
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
L +K + K + + + ++ + GE LLG +G GK+T +M+ G +PTSG
Sbjct: 4 LELKNVRKSFGS----FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 273 AYVMNHSIRD 282
+ + D
Sbjct: 60 ILIDGRDVTD 69
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 53.6 bits (130), Expect = 4e-08
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 236 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN---------AYVMNHSIRDSMD 285
SF + G G++G NGAGK+T FKM+TG +P SG AYV RD++D
Sbjct: 344 SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS--RDALD 400
Score = 37.4 bits (88), Expect = 0.007
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 246 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 276
G+LGLNGAGK+T +++ G K G A
Sbjct: 37 GVLGLNGAGKSTLLRIMAGVDKEFEGEARPA 67
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 52.8 bits (127), Expect = 4e-08
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
VK L Y K +N +SF V +GE ++G NG+GK+TT +++ G ++ SG
Sbjct: 7 VKNLTFKY-KEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65
Query: 275 VMNH 278
+
Sbjct: 66 IDGD 69
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 52.6 bits (127), Expect = 4e-08
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 269
+L ++ + K + + I+ V +GE +LG +G GK+T +++ G KPT
Sbjct: 1 MALLEIEGVSKSFG----GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT 56
Query: 270 SGNAYVMN 277
SG +
Sbjct: 57 SGEVLLDG 64
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 52.3 bits (126), Expect = 4e-08
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+ ++ + K + A++ ++ + GE LLG +G GKTTT +M+ G +PTSG
Sbjct: 1 VELENVTKRF----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGR 56
Query: 273 AYV 275
Y+
Sbjct: 57 IYI 59
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 51.1 bits (123), Expect = 6e-08
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
L V+ + Y ++ P + +SF + GE ++G +G+GK+T +++ G ++PTSG
Sbjct: 1 LEVENVSFRYPGAE--PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG 57
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 52.5 bits (127), Expect = 6e-08
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 216 KRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
K + K++ T A+N +S + GE FG++G +GAGK+T + + +PTSG V
Sbjct: 5 KNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLV 64
>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 278
Score = 52.3 bits (126), Expect = 7e-08
Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 13/128 (10%)
Query: 5 DLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFSVPST 64
DLL +++ + I NL L+ L L YG A I L +F
Sbjct: 147 DLLVGLIQLLIILLLLFGL----GIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEA 202
Query: 65 AFVVLGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQYLKVIFLIFPHFCLGEGLMKLANT 124
A +V+ L + L + +L+ IF I P F +GL+++
Sbjct: 203 AILVISILILLLSGFFGGLF---------PLPNMPSFLQWIFSIIPFFAPIDGLLRIIYG 253
Query: 125 YWTSSFAN 132
+
Sbjct: 254 DLAEILLS 261
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 51.7 bits (125), Expect = 8e-08
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
+ ++ +S + GE +LG NGAGK+T + L+G + P SG + + D
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAD 68
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 52.2 bits (126), Expect = 9e-08
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+L VK L + AV+ +SF + +GE G++G +G+GK+ K + G +
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK--P 58
Query: 272 NAYVMNHSIR-DSMDLVR 288
NA ++ I D DL+
Sbjct: 59 NARIVGGEILFDGKDLLS 76
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 51.3 bits (123), Expect = 1e-07
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 212 VLVVKRLFKIYANS-----KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 266
+L V+ + Y K P + +S + GE GLLG +G GK+T ++L G
Sbjct: 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61
Query: 267 KPTSGN 272
KP G
Sbjct: 62 KPAQGT 67
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 51.2 bits (123), Expect = 1e-07
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 216 KRLFKIYANSKDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 273
K + Y +++++ K A++ ++ V +GE +LG NG+GK+T K + + P+ G
Sbjct: 8 KNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV 67
Query: 274 YVMNHSIRDSMDL 286
YV D +L
Sbjct: 68 YVDGLDTSDEENL 80
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 51.0 bits (122), Expect = 2e-07
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 226 KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278
+ T AV +SF + G+ ++G NG+GK+T KML G I+PTSG + +H
Sbjct: 23 RQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDH 75
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 50.3 bits (121), Expect = 2e-07
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 220 KIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279
K Y + A+ +SF + +GE L G +GAGK+T K++ G +PT G V H
Sbjct: 9 KAYPGGR---EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHD 65
Query: 280 I 280
+
Sbjct: 66 L 66
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 51.1 bits (123), Expect = 2e-07
Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 215 VKRLFKIYANSKDTKP-AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 273
++ + K + + A++ +S + +GE FG++G +GAGK+T +++ +PTSG+
Sbjct: 4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63
Query: 274 YVMNHSI 280
+V +
Sbjct: 64 FVDGQDL 70
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 50.8 bits (122), Expect = 2e-07
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 221 IYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+ + D A+ I+F +GE LLG NGAGK+T F G +KPTSG
Sbjct: 7 LKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSG 57
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 50.3 bits (121), Expect = 2e-07
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 222 YANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281
Y N + PA++ +S + GE ++G G+GK+T K+L G KPTSG+ + IR
Sbjct: 12 YPNQE--IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR 69
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 51.1 bits (123), Expect = 3e-07
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
A++ ISF G+ L+G NGAGK+T K+L+G +P +G+
Sbjct: 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS 60
Score = 45.3 bits (108), Expect = 2e-05
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 230 PAVNQ-ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
P + + ISF V GE GL GL GAG++ K+L GA + T+G
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAG 308
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 49.9 bits (119), Expect = 3e-07
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
L K L K Y + V +S V GE GLLG NGAGKTTTF M+ G + +G
Sbjct: 3 TLTAKNLAKAYKGRR----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG 58
Query: 272 NAYVMNHSI 280
N + + I
Sbjct: 59 NIIIDDEDI 67
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 50.0 bits (120), Expect = 3e-07
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
A+N +SF V GE L+G NGAGKTT ++TG +P G DL +
Sbjct: 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLF-----DGDTDLTK 72
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 50.4 bits (121), Expect = 3e-07
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 208 DSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267
+++ V+ + Y ++ A+ +SF V GE ++G NG+GK+T K+L G +
Sbjct: 1 MKEEIIRVEHISFRYPDAA--TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL 58
Query: 268 PTSG 271
P +G
Sbjct: 59 PEAG 62
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 49.3 bits (118), Expect = 4e-07
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
P + +S V GEC L G +GAGK+T K L P SG V H +DL +
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV-RH-EGAWVDLAQ 78
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 50.5 bits (121), Expect = 4e-07
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
VN S V GE F ++GL+G+GK+T ++L I+PT G V D D+ +
Sbjct: 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILV------DGKDIAK 94
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 49.4 bits (118), Expect = 5e-07
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278
AV +SF + G+ ++G NG+GK+T KML G I+PTSG + +H
Sbjct: 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDH 75
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 50.2 bits (121), Expect = 5e-07
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR--DSM 284
PA++ +S + GE ++G G+GK+T K+L G +PT G+ + IR D
Sbjct: 476 QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPA 535
Query: 285 DLVR 288
DL R
Sbjct: 536 DLRR 539
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 49.8 bits (119), Expect = 7e-07
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+L ++ L K + D + AV+ +S + +GE F LLG +G GK+T +ML G +PT+G
Sbjct: 19 LLEIRNLTKSF----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAG 74
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 49.0 bits (117), Expect = 7e-07
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 218 LFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277
L Y+ SK+ A+N I+F R ++G NGAGK+T F+ G +KPTSG+ +
Sbjct: 9 LCYSYSGSKE---ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRG 65
Query: 278 HSI 280
I
Sbjct: 66 EPI 68
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 49.7 bits (119), Expect = 7e-07
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDL 286
KP + ISF + GE ++G +G+GK+T +++ G PTSG S+R D DL
Sbjct: 331 KPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG-------SVRLDGADL 382
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 49.4 bits (118), Expect = 8e-07
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279
A+ ++ V GE LLG NGAGK+T K+L+G +PT G + N +
Sbjct: 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN 68
Score = 39.8 bits (93), Expect = 0.001
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
S+D K V ISF V RGE G GL G+G+T L G K G +
Sbjct: 273 SRDRK-KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 47.8 bits (115), Expect = 8e-07
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
VL V+ L K AV +SF V GE G+ GL G G+T + L G P SG
Sbjct: 4 VLEVRGL--------SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASG 55
Query: 272 NAYVMNHSIR 281
+ +
Sbjct: 56 EITLDGKPVT 65
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 48.3 bits (116), Expect = 9e-07
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
+ V RGE ++G +G+GK+T +++ G ++P SG + I
Sbjct: 19 VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISG 66
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 48.7 bits (116), Expect = 1e-06
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 13/71 (18%)
Query: 215 VKRLFKIYANSKD-------------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKM 261
V + ++IY +K+ T A++ IS G+ GL+G+NG+GK+T +
Sbjct: 10 VTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNI 69
Query: 262 LTGAIKPTSGN 272
+ G++ PT G
Sbjct: 70 IGGSLSPTVGK 80
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 48.1 bits (115), Expect = 1e-06
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 222 YANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+ + K A+N +S + G+ ++G NGAGK+T + G +KPTSG
Sbjct: 12 FKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 47.3 bits (113), Expect = 2e-06
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 217 RLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
R+ I + K ++ +S + GE L G NGAGKTT K+L G IK +SG
Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG 55
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 47.7 bits (114), Expect = 2e-06
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 283
A++ IS + GE LLG +GAGK+T +++ G P +G + + D
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDV 69
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 47.0 bits (112), Expect = 2e-06
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+L + L K Y K + +S +G+GE ++G +G+GK+T +L G PTSG
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 272 NAYVMNHSIR 281
S+
Sbjct: 61 EVLFNGQSLS 70
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 47.0 bits (112), Expect = 3e-06
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
P + +S V GEC L G +G+GK+T + L P G V
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILV 70
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 46.8 bits (112), Expect = 3e-06
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 226 KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
D P + IS + GE L+G +G+GK+T ++ SG + H +RD
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRD 68
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 46.7 bits (112), Expect = 4e-06
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+ +S V +GE +LG NG GKTT K L G + SG
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG 55
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 46.9 bits (111), Expect = 4e-06
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 217 RLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
RL + + D PA+ I+ + +GE G++G NG+GK+T L G ++P G V
Sbjct: 3 RLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 47.6 bits (114), Expect = 4e-06
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
KP IS G G +GL+G NG GK+T K+L G ++P++GN
Sbjct: 14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGN 57
Score = 44.1 bits (105), Expect = 5e-05
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
L V+ L K + D P ++ + GE ++G NG GKTT + L G ++P SG
Sbjct: 320 LEVENLTKGF----DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG 374
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 47.6 bits (114), Expect = 4e-06
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 203 VERGADSGDVLVVKRLFKI------YANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKT 256
E+ D + + K +I + D P + +S + GE ++G +G+GK+
Sbjct: 454 PEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKS 513
Query: 257 TTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 288
T K+L G KP G + + D + +R
Sbjct: 514 TLLKLLLGLYKPQQGRILLDGVDLNDIDLASLR 546
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 46.2 bits (110), Expect = 5e-06
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+ + K Y N A++ I+ + GE L+G +GAGK+T K++ PTSG
Sbjct: 1 IEFINVTKTYPN---GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSG 56
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 46.6 bits (111), Expect = 5e-06
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
E G+LG NG GKTT KML G +KP G+ + ++
Sbjct: 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV 63
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 46.7 bits (111), Expect = 5e-06
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 270
+++ K + Y +SK KPA+N ISF + RG L+G NG+GK+T K++ G + P
Sbjct: 4 NIVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD 61
Query: 271 GNAYVMN 277
+
Sbjct: 62 NPNSKIT 68
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 46.1 bits (109), Expect = 5e-06
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281
+P + QISF + G L G NGAGKTT K++ G + P G SI+
Sbjct: 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK 66
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 45.8 bits (109), Expect = 5e-06
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
+ + +S + +GE LLG +G+GK+T ++LTG +KP G + + D +
Sbjct: 15 QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALS 74
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 47.3 bits (113), Expect = 6e-06
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
D K V S V RG+ L+G NG GKTT K++ G ++ SG +
Sbjct: 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC 378
Score = 30.3 bits (69), Expect = 1.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAI 266
+ E L+G NGAGK+T K+L G +
Sbjct: 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEV 53
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 45.7 bits (109), Expect = 6e-06
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 220 KIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 279
K Y A++ +S + +GE L G +GAGKTT K+L GA+ P+ G +
Sbjct: 9 KAYPGGV---AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGED 65
Query: 280 I 280
+
Sbjct: 66 V 66
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 46.5 bits (111), Expect = 7e-06
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
+ P VN +SF + +GE G+ GL GAG+T K+L GA+ TSG + H +
Sbjct: 264 SGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEV 316
Score = 34.2 bits (79), Expect = 0.064
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264
A++ + V G L+G NGAGK+T K+LTG
Sbjct: 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTG 52
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 46.0 bits (109), Expect = 8e-06
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 224 NSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
N D A+ I+ + +GE +LG NGAGK+T F+ L G +KP+SG
Sbjct: 14 NYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSG 61
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 46.1 bits (110), Expect = 1e-05
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264
A++ +S V GE L G NGAGK+T K+L+G
Sbjct: 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG 53
Score = 38.0 bits (89), Expect = 0.004
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 265
V+ +SF + RGE G+ GL GAG+T + L GA
Sbjct: 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA 311
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 45.3 bits (108), Expect = 1e-05
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
+ + V RGE +LG +G+GK+T +++ G ++P G + I
Sbjct: 25 DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQ 74
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 45.4 bits (108), Expect = 1e-05
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
K A++ ++ + GE GL+G G+GK+T + L G +KPTSG + I D
Sbjct: 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD 73
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 45.8 bits (109), Expect = 2e-05
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
GE G+LG NG GKTT K+L G IKP G
Sbjct: 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEG 396
Score = 39.6 bits (93), Expect = 0.002
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
G+ G+LG NG GK+T K+L G +KP G
Sbjct: 99 PGKVVGILGPNGIGKSTALKILAGELKPNLGR 130
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 45.6 bits (108), Expect = 2e-05
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
++ + V G GL+G NGAGKTT + + G + PT+G V
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLV 62
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 44.5 bits (105), Expect = 2e-05
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 237 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
+GE GLLG NGAGKTT + + G I P G V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKV 39
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 45.6 bits (108), Expect = 2e-05
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 208 DSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267
D+ DVL V+ L + + AV +SF + RGE ++G +G+GK+ T L ++
Sbjct: 8 DARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE 67
Query: 268 PTSGNA 273
G
Sbjct: 68 QAGGLV 73
Score = 32.1 bits (73), Expect = 0.34
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
AV ++SF + GE L+G +G+GK+TT + L ++ G
Sbjct: 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGG 379
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 45.6 bits (109), Expect = 2e-05
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 24/95 (25%)
Query: 191 LEEDDVR------KERERVERGADSGDVLV-----VKRL--FKIYANSKDTKPAVNQISF 237
L E+++R + ER R + LV K+L F + +I
Sbjct: 312 LPEENMRIRPEPIEFEERPPRDESERETLVEYPDLTKKLGDFSLEVEG-------GEIY- 363
Query: 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
GE G++G NG GKTT K+L G +KP G
Sbjct: 364 ---EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGE 395
Score = 40.6 bits (96), Expect = 7e-04
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
G+ G+LG NG GKTT K+L+G + P G+
Sbjct: 98 EGKVTGILGPNGIGKTTAVKILSGELIPNLGD 129
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 44.6 bits (106), Expect = 2e-05
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
L V+ L K + K + +S V RG+ F +LG G+GK+ + + G IKP SG
Sbjct: 1 LKVENLSKDWKEFK-----LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSG 54
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 45.3 bits (107), Expect = 2e-05
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
A+N ISF V GE G++GLNG+GK+T ++ G P G
Sbjct: 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG 79
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 44.7 bits (106), Expect = 2e-05
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
++ +S + GE +LG NGAGK+T K L+G + P SG + +
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL 65
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 44.1 bits (104), Expect = 3e-05
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268
+VV + + N A+ SF V G L+G+NG+GK+T FK L G ++
Sbjct: 3 QQAGIVVNDVTVTWRNGHT---ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL 59
Query: 269 TSGNAYVMNHSIRDSM 284
SG ++ R ++
Sbjct: 60 ASGKISILGQPTRQAL 75
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 44.0 bits (104), Expect = 3e-05
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
D + +SF + +G+ ++G NG+GK+T K++ G K SG + N +I D
Sbjct: 20 DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITD 75
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 43.7 bits (103), Expect = 3e-05
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
+N IS V GE + G +G GK+T K++ I PTSG
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 43.9 bits (104), Expect = 4e-05
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+ V+ + K + + A++ +S + GE LLG +G+GKTT +++ G +P SG
Sbjct: 3 IEVRNVSKRFGDF----VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 44.2 bits (105), Expect = 4e-05
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 198 KERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTT 257
+ E+ A +G L ++ + Y + A+ + + +GE +LG +G+GK+T
Sbjct: 322 EVTFPDEQTATTGQALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKST 379
Query: 258 TFKMLTGAIKPTSGN 272
++L GA P G+
Sbjct: 380 LLQLLAGAWDPQQGS 394
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 43.1 bits (102), Expect = 5e-05
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
L + L A S+ + +SF + GE + G NG GKTT ++L G ++P SG
Sbjct: 1 LAARNL----ACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG 55
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 43.3 bits (102), Expect = 6e-05
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+L V L K Y K +SF + GE G++G +G+GK+T L G + P G
Sbjct: 3 LLQVSGLSKSYGGGK----GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHG 58
Query: 272 NAYVMNHS 279
A + S
Sbjct: 59 TATYIMRS 66
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 42.7 bits (101), Expect = 7e-05
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
+ +SF + GE + G NGAGKTT ++L G ++P +G Y I++ +
Sbjct: 19 SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYH 74
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 43.1 bits (102), Expect = 8e-05
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
A+ IS V +GE LLG +G GKTT +++ G + T+G Y I
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI 68
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 42.2 bits (99), Expect = 8e-05
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
V GE G++G NG GKTT K+L G + P N D D +
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN---------DEWDGIT 62
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 43.0 bits (102), Expect = 1e-04
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+PA+ +SF V GE L+G +GAGK+T +L G + PT G
Sbjct: 333 GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEG 377
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 42.8 bits (101), Expect = 1e-04
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
V+ L Y KD A+ +S + G LLG NGAGK+T L G P G
Sbjct: 7 VEDLHFRY---KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 275 VMNHSI 280
VM +
Sbjct: 64 VMGREV 69
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 42.1 bits (99), Expect = 1e-04
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+D + + +SF + GE + G NG+GKTT ++L G P +G
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG 55
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 42.6 bits (101), Expect = 1e-04
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 193 EDDVRKERER---VERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLG 249
ED V R+ ++ G G V F Y NS+ V +SF G+ ++G
Sbjct: 313 EDAVPDVRDPPGAIDLGRVKGAVEFDDVSFS-YDNSR---QGVEDVSFEAKPGQTVAIVG 368
Query: 250 LNGAGKTTTFKMLTGAIKPTSG 271
GAGK+T +L P SG
Sbjct: 369 PTGAGKSTLINLLQRVFDPQSG 390
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 41.6 bits (98), Expect = 1e-04
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
++ V L K + + + V RGE ++G +G+GK+T +L G P+SG
Sbjct: 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG 65
Query: 272 NAYVMNHSI 280
++ +
Sbjct: 66 EVRLLGQPL 74
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 42.4 bits (100), Expect = 2e-04
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 192 EEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLN 251
E+D + ER GDV F+ Y +PA++ IS + GE L+G +
Sbjct: 316 EKDTGTRAIERAR-----GDVEFRNVTFR-YPG--RDRPALDSISLVIEPGETVALVGRS 367
Query: 252 GAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
G+GK+T ++ +P SG + H + D
Sbjct: 368 GSGKSTLVNLIPRFYEPDSGQILLDGHDLAD 398
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 42.3 bits (100), Expect = 2e-04
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
+V I+ + RGE L+G NG+GK+T +LTG +P SG +
Sbjct: 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 41.4 bits (97), Expect = 2e-04
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
A++++S + +GE L+G NGAGKTT L G + TSG
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGR 61
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 42.1 bits (99), Expect = 3e-04
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 217 RLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
++ K+ A D + ++ I + G GLLG NGAGK+T K+L G + P SG
Sbjct: 314 KMEKVSAGYGD-RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSG 367
Score = 30.5 bits (69), Expect = 1.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 242 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 273
G+ GL+G NG GK+T +L I G+
Sbjct: 27 GQKVGLVGKNGCGKSTLLALLKNEISADGGSY 58
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 41.6 bits (98), Expect = 3e-04
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
KP + ISF + GE ++G +G+GK+T K+L PTSG + IRD
Sbjct: 342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRD 395
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 41.7 bits (98), Expect = 3e-04
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
V I+ + RGE L+G NG+GK+T +LTG +P SG +
Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 40.9 bits (96), Expect = 3e-04
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+L V L K+Y K +SF + GE G++G +G+GKTT K ++G + P +G
Sbjct: 6 LLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
Query: 272 N-AYVM 276
Y M
Sbjct: 62 TVTYRM 67
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 41.0 bits (96), Expect = 3e-04
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+L L K Y ++ +SF +G GE ++G +G+GK+T +L G PTSG
Sbjct: 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 41.0 bits (96), Expect = 3e-04
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
+ + K++ T A+N +S V G+ +G++G +GAGK+T + + +PTSG+
Sbjct: 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI 63
Query: 275 V 275
V
Sbjct: 64 V 64
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 40.7 bits (96), Expect = 4e-04
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
KP + I+F + GE ++G GAGKTT +L P G + IRD
Sbjct: 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRD 69
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 41.1 bits (97), Expect = 4e-04
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
S D K ++ + + GE LLG +G GKTT +++ G P SG
Sbjct: 23 SFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 40.2 bits (94), Expect = 4e-04
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281
S++ +P + F V GE + G NGAGKTT ++L G + SG + +
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTAT 76
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 40.6 bits (95), Expect = 5e-04
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
S + V+ + G GLLG NG+GK+T ++L GA++P +G
Sbjct: 10 SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAG 56
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 40.5 bits (95), Expect = 5e-04
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
++ +S + G+ LLG NGAGK+T +++ G + P G
Sbjct: 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG 59
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 41.2 bits (97), Expect = 5e-04
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
PA++ ++ V GE L+G +GAGK+T F++L P SG
Sbjct: 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSG 395
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 41.0 bits (96), Expect = 5e-04
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264
A++ I V GEC GL G NGAGK+T K+L+G
Sbjct: 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG 49
Score = 38.7 bits (90), Expect = 0.002
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 208 DSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267
+ GDV++ R + + V+ +SF + RGE G+ GL GAG+T + L GA
Sbjct: 252 EIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP 311
Query: 268 PT-SGNAYVMNH--SIRDSMDLVR 288
GN ++ IR+ +R
Sbjct: 312 GKFEGNVFINGKPVDIRNPAQAIR 335
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 40.4 bits (95), Expect = 5e-04
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+N +S + GE LLG +G GK+T ++L G P+ GN
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGN 68
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 40.7 bits (96), Expect = 6e-04
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 217 RLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 276
L + D KPA++ ++ + G+ L+G +GAGK+T +L G + PT G V
Sbjct: 322 SLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVN 381
Query: 277 NHSIRD 282
+RD
Sbjct: 382 GIDLRD 387
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 39.8 bits (94), Expect = 7e-04
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 234 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+SF + GE + G NGAGKT+ ++L G +P +G
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAG 56
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 39.8 bits (93), Expect = 8e-04
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 196 VRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGK 255
+ ++E +R S D + + P + I+ + +GE + G G+GK
Sbjct: 22 EKAKQENNDRKHSSDDNNLFFSNLCLVGA-----PVLKNINLKIEKGEMLAITGSTGSGK 76
Query: 256 TTTFKMLTGAIKPTSGNAYVMNHSIRDS 283
T+ ++ G ++P+ G + HS R S
Sbjct: 77 TSLLMLILGELEPSEG---KIKHSGRIS 101
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 39.0 bits (92), Expect = 0.001
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 224 NSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------AYV- 275
++T + I+ V +GE ++G G+GK++ L G ++ SG+ AYV
Sbjct: 13 GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVS 72
Query: 276 -----MNHSIRD 282
N +IR+
Sbjct: 73 QEPWIQNGTIRE 84
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 40.0 bits (94), Expect = 0.001
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
I F + GE LLG NGAGK+T K++ G + P SG
Sbjct: 30 IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66
Score = 35.0 bits (81), Expect = 0.038
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
IS V GE GL G+ GAG+T + L G G + I
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINA 329
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 39.4 bits (92), Expect = 0.001
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
A++ ++ V G LLG +G+GK+T +++ G +P SG
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSG 55
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 39.3 bits (92), Expect = 0.001
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
L + L+ Y KPA+ I+ + GE +LG +G GKTT ++ G + G
Sbjct: 2 LQISHLYADYGG----KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG 56
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 39.1 bits (92), Expect = 0.001
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 281
K A+ IS + +GE L+G +G GK+T ++L P G + I
Sbjct: 11 GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY 70
Query: 282 D 282
D
Sbjct: 71 D 71
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 40.0 bits (94), Expect = 0.001
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 269
AV+ IS + RG+ GL+G +G+GK+T L I
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340
Score = 37.6 bits (88), Expect = 0.006
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTT 258
T AV ISF + GE L+G +G+GK+ T
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVT 52
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 39.0 bits (91), Expect = 0.001
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
D ++ IS + GE G++G +G+GK+T K++ P +G V H +
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDL 66
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 39.2 bits (91), Expect = 0.001
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
V S + GE F ++GL+G+GK+T ++L I+PT G + D +D+ +
Sbjct: 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLI------DGVDIAK 94
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 38.9 bits (90), Expect = 0.001
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+L V+ L Y D +N +SF + +GE ++G NG+GK+TT +++ G + G
Sbjct: 4 ILEVENLVFKYEKESDVN-QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEG 62
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 38.8 bits (91), Expect = 0.002
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
L V+ L K+Y K +SF + GE G++G +G+GKTT L+ + P +G
Sbjct: 7 LSVRGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGE 62
Query: 273 A-YVMNH 278
Y M
Sbjct: 63 VHYRMRD 69
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 38.3 bits (90), Expect = 0.002
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 234 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+SF + GE L G NG+GKTT +++ G + P +G
Sbjct: 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT 58
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 38.6 bits (90), Expect = 0.002
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 13/62 (20%)
Query: 225 SKDTKPAVNQISFGV-GR------------GECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
DT A+ +SF V GR G+ GL+G NG+GK+T KML P+ G
Sbjct: 7 HSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEG 66
Query: 272 NA 273
Sbjct: 67 EI 68
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 38.4 bits (90), Expect = 0.002
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
TK ++ +S + +G ++G NGAGK+T M++ +K SG + +
Sbjct: 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTS 67
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 38.5 bits (90), Expect = 0.003
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 270
+ +V+K + K + ++ ++ ++ + +G LLG +G GKTT +++ G KPT
Sbjct: 5 NFVVLKNITKRFGSNT----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE 60
Query: 271 GNAY-----VMNHSI--RD 282
G + V + SI RD
Sbjct: 61 GQIFIDGEDVTHRSIQQRD 79
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 37.5 bits (87), Expect = 0.003
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 249 GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
G NG GK++ +M+ G ++P+SGN Y N +I
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI 64
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 37.6 bits (88), Expect = 0.004
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 226 KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
+P + +SF + G+ ++G +G+GK+T ++L +SG+ + IR+
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIRE 67
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 38.1 bits (89), Expect = 0.004
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTT 258
D V ISF + GE GL+G +G+GK+TT
Sbjct: 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTT 328
Score = 30.8 bits (70), Expect = 0.94
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTT 258
L ++ L + + + VN +S + GE L+G +G+GK+ T
Sbjct: 6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVT 51
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 37.4 bits (87), Expect = 0.005
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 227 DTKPAVNQISFGVGRGECFGLL-GLNGAGKTTTFKMLTGAIKPTSG 271
+N ISF + GE F L+ G +G GK+T K++ I PTSG
Sbjct: 18 GDAKILNNISFSLRAGE-FKLITGPSGCGKSTLLKIVASLISPTSG 62
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 38.0 bits (88), Expect = 0.005
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 179 FTRSNPHPVPVSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKP-AVNQISF 237
+ P P + D+V S D + +K + + ++ A+ I
Sbjct: 309 ERFNEPEPELELSDADNVLLLAHD-----KSVDSIELKDVHMNPKAPEGSEGFALGPIDL 363
Query: 238 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+ +G+ ++G NG GK+T K+ G P G
Sbjct: 364 RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEG 397
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 37.6 bits (88), Expect = 0.005
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 212 VLVVKRLFKIYANSK------DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 265
+L L K Y + A++ +SF + RG+ ++G +G GK+T ++LT
Sbjct: 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI 64
Query: 266 IKPTSGNAY 274
PT G Y
Sbjct: 65 ETPTGGELY 73
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 37.3 bits (87), Expect = 0.005
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 242 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
G+ GL+G NG GK+T K+L G +KP G
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGK 56
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 37.7 bits (88), Expect = 0.006
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 192 EEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLN 251
E+D+ ++ ER + GD+ F K+ PA+ I+F + G+ L+G +
Sbjct: 327 EKDEGKRVIERAK-----GDIEFRNVTF--TYPGKEV-PALRNINFKIPAGKTVALVGRS 378
Query: 252 GAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
G+GK+T +LT G + H +RD
Sbjct: 379 GSGKSTIANLLTRFYDIDEGEILLDGHDLRD 409
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 37.0 bits (86), Expect = 0.007
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268
V ++ + RGE L+G +G+GK+ T + G + P
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPP 38
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 37.6 bits (87), Expect = 0.008
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 199 ERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTT 258
++ R +GD + F +Y P + ISF + +G+ + G G+GK++
Sbjct: 414 KQNNKARKQPNGDDGLFFSNFSLYVT-----PVLKNISFKLEKGQLLAVAGSTGSGKSSL 468
Query: 259 FKMLTGAIKPTSGNAYVMNHSIRDS 283
M+ G ++P+ G + HS R S
Sbjct: 469 LMMIMGELEPSEGK---IKHSGRIS 490
Score = 31.0 bits (70), Expect = 0.80
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 209 SGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 262
SG + V+ L Y ++ + + +SF V G+ GLLG G+GK+T L
Sbjct: 1214 SGGQMDVQGLTAKY--TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 35.8 bits (82), Expect = 0.008
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277
GE ++G G+GKTT + L + P G ++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 36.2 bits (84), Expect = 0.010
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
D P + +SF V GE G++G GAGK+T L ++ G
Sbjct: 19 DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEG 63
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 36.4 bits (85), Expect = 0.011
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGN 272
K + ++ V GE ++G NG+GK+T + G + T G
Sbjct: 15 GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGE 62
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 36.8 bits (85), Expect = 0.011
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 222 YANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN--------A 273
+ANS V +SF G+ ++G GAGKTT +L PT G
Sbjct: 344 FANSSQ---GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDIN 400
Query: 274 YVMNHSIRDSMDLV 287
V S+R S+ V
Sbjct: 401 TVTRESLRKSIATV 414
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 36.6 bits (85), Expect = 0.014
Identities = 17/70 (24%), Positives = 27/70 (38%)
Query: 203 VERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 262
G L + A P ++ +S + GE +LG +G+GK+T L
Sbjct: 322 APAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATL 381
Query: 263 TGAIKPTSGN 272
G + P G
Sbjct: 382 AGLLDPLQGE 391
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 36.3 bits (85), Expect = 0.017
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
P + +S + GE LLG G GK+T ++LT A P G + I D
Sbjct: 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD 406
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 35.9 bits (83), Expect = 0.017
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 273
+ A+ +S + GE +LG +G GKTT ++ G + P+ G+
Sbjct: 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI 62
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 35.6 bits (82), Expect = 0.017
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
+ A+ ++F + GE L G +GAGK+T K++ G +P++G + H I
Sbjct: 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDI 66
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 35.5 bits (82), Expect = 0.018
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
++ + + IS V RG+ ++G +G GKTT +++ G I P G
Sbjct: 16 TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHG 62
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 35.2 bits (81), Expect = 0.020
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 236 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
V GE ++G +GAGK+T ++ G I+P SG+ V
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV 57
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 35.9 bits (83), Expect = 0.022
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 189 VSLEEDDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLL 248
V L + + +++R E +GD+++ + S ++ IS + ++
Sbjct: 451 VYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGS----NILSDISLTIKMNSKTTIV 506
Query: 249 GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
G++G+GK+T K+L G + SG + S++D
Sbjct: 507 GMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKD 540
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 35.4 bits (81), Expect = 0.026
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 266
++ V++L K + + A++ + + GE LLG +G+GK+T + L+G I
Sbjct: 4 IIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI 54
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 35.0 bits (81), Expect = 0.026
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
TK +N +S + G+ L+G NG GK+T K + P SG
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSG 57
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 35.4 bits (82), Expect = 0.026
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 215 VKRLFKIYANSKDTKP----AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 270
VK + KI+ N K P A++ +S + +GE ++G G+GKTT + L + P +
Sbjct: 5 VKNIVKIF-NKK--LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 271 G 271
G
Sbjct: 62 G 62
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 35.6 bits (82), Expect = 0.027
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY--------VMNHSIRDSMDL 286
++FG+ ++G NG GK+T K+++G ++P+SG + V + D +DL
Sbjct: 528 LNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDL 587
Score = 28.3 bits (63), Expect = 6.2
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 232 VNQISFGVGRGECFGLLGLNGAGKTTTFK-MLTGAI 266
+ S + G +GL+G NG GKTT + M AI
Sbjct: 193 IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI 228
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 34.4 bits (80), Expect = 0.032
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRD 282
++ + +GE L+G NG+GK+T K + G + T G I D
Sbjct: 19 VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 34.8 bits (80), Expect = 0.032
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 219 FKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278
FK + S K + IS G + ++G +GAGK+T K++ I PT G+ +
Sbjct: 6 FKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGV 65
Query: 279 SIR--DSMDLVR 288
I+ D +DL R
Sbjct: 66 DIKTIDVIDLRR 77
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 34.7 bits (80), Expect = 0.033
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
++ + +GE L+G +G GK+T +++G +PTSG +
Sbjct: 4 VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL 44
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 34.6 bits (79), Expect = 0.037
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 203 VERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 262
+E G + DV + RL+ +Y N K + I+ + FG++G +G+GK+T K+L
Sbjct: 1 MEAGKSAEDVFNISRLY-LYINDK---AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL 56
Query: 263 TGAIK 267
I+
Sbjct: 57 NRLIE 61
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 34.9 bits (81), Expect = 0.038
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 24/77 (31%)
Query: 194 DDVRKERERVERGADSGDV--LVVKRLFKIYA----------NSKDTKPAVNQISFGVGR 241
+++RK + ++ D V + + L +I K+ KP V I F
Sbjct: 91 EELRKREGKKKKIKDEETVKEALREALIEILRPVDKVDLPLEIPKEKKPFV--ILF---- 144
Query: 242 GECFGLLGLNGAGKTTT 258
+G+NG GKTTT
Sbjct: 145 ------VGVNGVGKTTT 155
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 34.8 bits (80), Expect = 0.039
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 198 KERERVERGADSGDVLVVKRLFKIYANSKDTKP--AVNQISFGVGRGECFGLLGLNGAGK 255
K++ +V +L VK L+ ++ + K A+N IS+ + + + ++G +G+GK
Sbjct: 7 KKKLKVPNPLSDDIILRVKNLYCVF-DEKQENELVALNNISYTFEKNKIYFIIGNSGSGK 65
Query: 256 TTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 288
+T G IK G V + I D +
Sbjct: 66 STLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 34.8 bits (80), Expect = 0.039
Identities = 11/42 (26%), Positives = 26/42 (61%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
A++ ++ +G+ + ++G G+GK+T + + +KPT+G
Sbjct: 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGT 63
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 34.7 bits (79), Expect = 0.041
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 224 NSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
NS A+ I V +G L+G G+GK+T + L G ++PT G V
Sbjct: 14 NSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV 65
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 35.0 bits (81), Expect = 0.041
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264
S + +P ++ +S+ V GE + ++G NGAGK+T ++TG
Sbjct: 269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 34.2 bits (79), Expect = 0.044
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 242 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
E G+ G +GAGK+T + + G KP G +
Sbjct: 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL 56
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 34.4 bits (79), Expect = 0.049
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
K ++ ISF + G L+G G+GK+T + +KP+SG + + I
Sbjct: 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHI 71
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 34.1 bits (79), Expect = 0.051
Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
+K + K + + K ++ ++ + +G+ + ++G +G+GK+T ++ K SG Y
Sbjct: 1 LKNISKKFGD----KVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVY 56
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 34.3 bits (79), Expect = 0.054
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 233 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
N IS + G+ LLG +G+GKTT +++ G TSG
Sbjct: 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG 57
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 34.2 bits (78), Expect = 0.062
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268
+S + GE L+G +G GKTT + + G +K
Sbjct: 24 LSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA 57
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 33.9 bits (78), Expect = 0.072
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 212 VLVVKRLFKIYANSKDTK----------PAVNQISFGVGRGECFGLLGLNGAGKTTTFKM 261
+L V L K++ + KD K AV+ ++ + GE G++G +G GK+T +
Sbjct: 8 LLEVADL-KVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARA 66
Query: 262 LTGAIKPTSGN 272
+ G +K T G
Sbjct: 67 IIGLVKATDGE 77
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 33.4 bits (76), Expect = 0.088
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 246 GLLGLNGAGKTTTFKMLTGAIKPTSG 271
GL+G NG GK+T F L+G ++P G
Sbjct: 31 GLVGANGCGKSTLFMNLSGLLRPQKG 56
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 33.6 bits (77), Expect = 0.089
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264
++ + + +S + G LLG NGAGK+T K L G
Sbjct: 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG 49
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 33.4 bits (77), Expect = 0.10
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
+S V GE L+G NGAGK+T + G + P SG+ +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEA 61
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 33.4 bits (77), Expect = 0.13
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 226 KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
D ++ +S + GE ++G +G+GK+T ++L G P SG+ +
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 33.2 bits (76), Expect = 0.13
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 247 LLGLNGAGKTTTFKMLTGAIKPTSG 271
LLG +G GKTT ++L G +P SG
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSG 25
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 32.2 bits (74), Expect = 0.20
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 236 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
V RGE +LG +GAGK+T ++ G + P SG+
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGS 55
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 32.1 bits (74), Expect = 0.23
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 286
K + IS V +GE ++G +G+GK+T + L G +P SG+ V + D D+
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDI 72
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 31.8 bits (73), Expect = 0.26
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYV 275
K + ++ V +GE ++G NG+GK+T K + G + + TSG
Sbjct: 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 32.4 bits (74), Expect = 0.26
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 262
PA+ ++F + G+ G+ G G+GK+T ++
Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI 361
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 31.4 bits (72), Expect = 0.27
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264
+ +SF + G+ + G +G GK++ F+ L G
Sbjct: 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG 49
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 32.3 bits (74), Expect = 0.28
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264
D + +++++F V GE + G +GAGKT+ + L G
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG 441
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 32.3 bits (73), Expect = 0.31
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 203 VERGADSGDVLVVKRL-FKIYANSKDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTT 258
VE D + +K++ FK DT+ V ++F + G+ + +G +G GK+T
Sbjct: 368 VENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTI 427
Query: 259 FKMLTGAIKPTSGNAYVMN-HSIRD 282
K++ PT G+ + + H+++D
Sbjct: 428 LKLIERLYDPTEGDIIINDSHNLKD 452
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 31.7 bits (73), Expect = 0.33
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
+K L K + + + I V +GE ++G +G+GK+T + + +P SG
Sbjct: 3 IKNLHKSFGD----FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 275 VMNHSIRDS 283
+ + D
Sbjct: 59 IDGLKLTDD 67
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 32.1 bits (73), Expect = 0.33
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 30/98 (30%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQI-----SFGVGR-----------------GECFGLLGL 250
+ K + K +A+ D K N+ SFGV + G+ ++G
Sbjct: 358 IKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQ 417
Query: 251 NGAGKTTTFKMLTGAIK--------PTSGNAYVMNHSI 280
+GAGKTT +M+ GA K P SG V +++
Sbjct: 418 SGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV 455
>gnl|CDD|214940 smart00962, SRP54, SRP54-type protein, GTPase domain. This entry
represents the GTPase domain of the 54 kDa SRP54
component, a GTP-binding protein that interacts with the
signal sequence when it emerges from the ribosome. SRP54
of the signal recognition particle has a three-domain
structure: an N-terminal helical bundle domain, a GTPase
domain, and the M-domain that binds the 7s RNA and also
binds the signal sequence. The extreme C-terminal region
is glycine-rich and lower in complexity and poorly
conserved between species. The GTPase domain is
evolutionary related to P-loop NTPase domains found in a
variety of other proteins.
Length = 197
Score = 31.2 bits (72), Expect = 0.36
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 247 LLGLNGAGKTTT 258
L+G NG GKTTT
Sbjct: 6 LVGPNGVGKTTT 17
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 31.5 bits (72), Expect = 0.36
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRD 282
+ + ++ + +GE ++G NG+GK+T K++ G A K G+ SI D
Sbjct: 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILD 75
>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small
GTPases. Arf (ADP-ribosylation factor)/Arl (Arf-like)
small GTPases. Arf proteins are activators of
phospholipase D isoforms. Unlike Ras proteins they lack
cysteine residues at their C-termini and therefore are
unlikely to be prenylated. Arfs are N-terminally
myristoylated. Members of the Arf family are regulators
of vesicle formation in intracellular traffic that
interact reversibly with membranes of the secretory and
endocytic compartments in a GTP-dependent manner. They
depart from other small GTP-binding proteins by a unique
structural device, interswitch toggle, that implements
front-back communication from N-terminus to the
nucleotide binding site. Arf-like (Arl) proteins are
close relatives of the Arf, but only Arl1 has been shown
to function in membrane traffic like the Arf proteins.
Arl2 has an unrelated function in the folding of native
tubulin, and Arl4 may function in the nucleus. Most
other Arf family proteins are so far relatively poorly
characterized. Thus, despite their significant sequence
homologies, Arf family proteins may regulate unrelated
functions.
Length = 158
Score = 31.0 bits (71), Expect = 0.37
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 247 LLGLNGAGKTTTFKML----TGAIKPTSG 271
+LGL+GAGKTT L PT G
Sbjct: 4 MLGLDGAGKTTILYKLKLGEVVTTIPTIG 32
>gnl|CDD|232804 TIGR00064, ftsY, signal recognition particle-docking protein FtsY.
There is a weak division between FtsY and SRP54; both
are GTPases. In E.coli, ftsY is an essential gene
located in an operon with cell division genes ftsE and
ftsX, but its apparent function is as the signal
recognition particle docking protein [Protein fate,
Protein and peptide secretion and trafficking].
Length = 272
Score = 31.4 bits (72), Expect = 0.38
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 21/73 (28%)
Query: 194 DDVRKE--RERVERGADSGDVLVVKRLFKIY------ANSKDTKPAVNQISFGVGRGECF 245
+ ++KE ++V+ ++L L +I ++ KP V
Sbjct: 29 EALKKELKGKKVKDAELLKEILKEY-LKEILKETDLELIVEENKPNV------------I 75
Query: 246 GLLGLNGAGKTTT 258
+G+NG GKTTT
Sbjct: 76 LFVGVNGVGKTTT 88
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 31.9 bits (73), Expect = 0.39
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 234 QISFGV-GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+F + RG L G +G+GKT+ M+ G +P G
Sbjct: 16 DANFTLPARGIT-ALFGPSGSGKTSLINMIAGLTRPDEG 53
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 31.6 bits (72), Expect = 0.44
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 222 YANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 275
Y + ++ + IS + GE ++G +G+GK+T +L KPTSG V
Sbjct: 14 YPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRV 67
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 31.5 bits (71), Expect = 0.44
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
L V L K Y + K +S G+ ++G +G+GK+T + + KP+ G+
Sbjct: 6 LNVIDLHKRYGEHEVLK----GVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGS 61
Query: 273 AYVMNHSIRDSMDLVR 288
V +I LVR
Sbjct: 62 IVVNGQTIN----LVR 73
>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family. Pfam combines a
number of different Prosite families together.
Length = 174
Score = 30.7 bits (70), Expect = 0.47
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 247 LLGLNGAGKTTTFKMLTG----AIKPTSG 271
+LGL+ AGKTT L PT G
Sbjct: 19 ILGLDNAGKTTILYKLKLGEIVTTIPTIG 47
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 31.5 bits (71), Expect = 0.48
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 196 VRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGK 255
VR++ E +L VK L Y K AVN IS + + L+G +G GK
Sbjct: 5 VREKIEIAPFPEAKEHILEVKDLSIYYGE----KRAVNDISMDIEKHAVTALIGPSGCGK 60
Query: 256 TT 257
+T
Sbjct: 61 ST 62
>gnl|CDD|236686 PRK10416, PRK10416, signal recognition particle-docking protein
FtsY; Provisional.
Length = 318
Score = 31.2 bits (72), Expect = 0.50
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 194 DDVRKERERVERGADSGDVL---VVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGL 250
+++R+ +R + + L + + L +I +P ++ + ++G+
Sbjct: 71 EELRERVKR--KNLKDPEELKELLKEELAEIL------EPVEKPLNIEEKKPFVILVVGV 122
Query: 251 NGAGKTTT 258
NG GKTTT
Sbjct: 123 NGVGKTTT 130
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 31.2 bits (71), Expect = 0.51
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
V GE +LG +GAGK+T ++ G P SG
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPASG 54
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 31.4 bits (71), Expect = 0.51
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 267
AV+++S + GE GL+G +G+GK+ K + G K
Sbjct: 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK 58
>gnl|CDD|215925 pfam00448, SRP54, SRP54-type protein, GTPase domain. This family
includes relatives of the G-domain of the SRP54 family
of proteins.
Length = 196
Score = 31.0 bits (71), Expect = 0.53
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 247 LLGLNGAGKTTT 258
L+GL G+GKTTT
Sbjct: 6 LVGLQGSGKTTT 17
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 30.9 bits (70), Expect = 0.54
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 222 YANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281
Y DT + +SF + GE L+G +G+GK+T +L +P G + I
Sbjct: 21 YPTRPDT-LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPIS 79
Query: 282 D 282
Sbjct: 80 Q 80
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 30.6 bits (70), Expect = 0.60
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264
SK K + +S GE ++G +GAGK+T L G
Sbjct: 18 SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAG 57
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 31.6 bits (71), Expect = 0.64
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 244 CFGLLGLNGAGKTTTFKML----TGAIKP-TSGNAYV 275
L+G NGAGKTT + L TG P T GN +V
Sbjct: 30 LTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFV 66
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 30.8 bits (70), Expect = 0.65
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 203 VERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 262
+ +L VK L ++ AVN ++F + GE G++G +G+GK+ T L
Sbjct: 3 PLAQQQADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFAL 62
Query: 263 TG 264
G
Sbjct: 63 MG 64
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 31.0 bits (70), Expect = 0.65
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
+ + Y + A+ I+ GE LLG +GAGK++ ++L P SG
Sbjct: 5 LNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 275 VMNHS 279
+ +
Sbjct: 61 IAGNH 65
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 30.9 bits (70), Expect = 0.70
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 266
AV++IS+ V +GE G++G +G+GK+ + + G I
Sbjct: 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI 57
>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase. Arl2 (Arf-like 2) GTPases
are members of the Arf family that bind GDP and GTP with
very low affinity. Unlike most Arf family proteins, Arl2
is not myristoylated at its N-terminal helix. The
protein PDE-delta, first identified in photoreceptor rod
cells, binds specifically to Arl2 and is structurally
very similar to RhoGDI. Despite the high structural
similarity between Arl2 and Rho proteins and between
PDE-delta and RhoGDI, the interactions between the
GTPases and their effectors are very different. In its
GTP bound form, Arl2 interacts with the protein Binder
of Arl2 (BART), and the complex is believed to play a
role in mitochondrial adenine nucleotide transport. In
its GDP bound form, Arl2 interacts with tubulin- folding
Cofactor D; this interaction is believed to play a role
in regulation of microtubule dynamics that impact the
cytoskeleton, cell division, and cytokinesis.
Length = 173
Score = 30.4 bits (69), Expect = 0.72
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 247 LLGLNGAGKTTTFKMLTG----AIKPTSG 271
+LGL+ AGKTT K G I PT G
Sbjct: 19 MLGLDNAGKTTILKKFNGEDISTISPTLG 47
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 30.6 bits (69), Expect = 0.75
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 245 FGLLGLNGAGKTTTFKMLTGA 265
+ G NG+GKTT + A
Sbjct: 22 TLIYGPNGSGKTTILDAIRWA 42
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 30.5 bits (70), Expect = 0.78
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
+ P + ISF + GE G++G G+GK++ L ++ +SG+ + I
Sbjct: 13 RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI 68
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 30.6 bits (69), Expect = 0.81
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 234 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 268
++F + +GE L+G +G GK+T + GA+
Sbjct: 20 NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAG 54
>gnl|CDD|239389 cd03115, SRP, The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria
and the endoplasmic reticulum in eukaryotes. SRP
recognizes N-terminal sighnal sequences of newly
synthesized polypeptides at the ribosome. The
SRP-polypeptide complex is then targeted to the membrane
by an interaction between SRP and its cognated receptor
(SR). In mammals, SRP consists of six protein subunits
and a 7SL RNA. One of these subunits is a 54 kd protein
(SRP54), which is a GTP-binding protein that interacts
with the signal sequence when it emerges from the
ribosome. SRP54 is a multidomain protein that consists
of an N-terminal domain, followed by a central G
(GTPase) domain and a C-terminal M domain.
Length = 173
Score = 30.2 bits (69), Expect = 0.81
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 247 LLGLNGAGKTTT 258
L+GL G GKTTT
Sbjct: 5 LVGLQGVGKTTT 16
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 30.4 bits (69), Expect = 0.88
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
+ + Y + A+ I+ +GE LLG +GAGK++ ++L P SG
Sbjct: 5 LNGINCFYGAHQ----ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 275 VMNH 278
+ +
Sbjct: 61 IAGN 64
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 30.2 bits (69), Expect = 0.89
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 228 TKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
++P V +S + G+ L+G +G GK+T +L PTSG + IRD
Sbjct: 12 SRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRD 69
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 30.9 bits (70), Expect = 0.89
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
A++ ++ V L+G NGAGK+T K L G + SG+
Sbjct: 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGS 54
Score = 30.9 bits (70), Expect = 0.90
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-----NAYVMNHSIRDS 283
+P++ +SF + +GE G+ GL GA +T + L G + ++G + NH+ ++
Sbjct: 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEA 320
Query: 284 M 284
+
Sbjct: 321 I 321
>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases.
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like
Arl4 and Arl7, are localized to the nucleus and
nucleolus. Arl5 is developmentally regulated during
embryogenesis in mice. Human Arl5 interacts with the
heterochromatin protein 1-alpha (HP1alpha), a nonhistone
chromosomal protein that is associated with
heterochromatin and telomeres, and prevents telomere
fusion. Arl5 may also play a role in embryonic nuclear
dynamics and/or signaling cascades. Arl8 was identified
from a fetal cartilage cDNA library. It is found in
brain, heart, lung, cartilage, and kidney. No function
has been assigned for Arl8 to date.
Length = 174
Score = 30.0 bits (68), Expect = 1.0
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 247 LLGLNGAGKTTT-FKMLTGAI---KPTSG 271
++GL+ AGKTT ++ L G + PT G
Sbjct: 20 IVGLDNAGKTTILYQFLLGEVVHTSPTIG 48
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 30.5 bits (69), Expect = 1.1
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 227 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 286
D+ ++ ++ + GE G++G +G+GK+T K+L P G V D +DL
Sbjct: 468 DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLV------DGVDL 521
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 30.2 bits (68), Expect = 1.2
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVR 288
AV+++S + GE GL+G +G+GK+ K + G T N V +R D +DL+R
Sbjct: 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV---TKDNWRVTADRMRFDDIDLLR 77
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 30.0 bits (68), Expect = 1.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 247 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
++G G+GK+T + L G ++PTSG + I
Sbjct: 38 IIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVI 71
>gnl|CDD|236167 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional
regulator; Reviewed.
Length = 309
Score = 29.9 bits (68), Expect = 1.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 247 LLGLNGAGKTTTFKMLTGAIK 267
L+GL GAGK+T +ML +
Sbjct: 138 LIGLRGAGKSTLGRMLAARLG 158
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 29.7 bits (67), Expect = 1.4
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 230 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 281
A+ ++ + G +G G+GK+T ++L G PT G+ V + I
Sbjct: 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLIT 72
>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase. Arl3 (Arf-like 3) is an
Arf family protein that differs from most Arf family
members in the N-terminal extension. In is inactive,
GDP-bound form, the N-terminal extension forms an
elongated loop that is hydrophobically anchored into the
membrane surface; however, it has been proposed that
this region might form a helix in the GTP-bound form.
The delta subunit of the rod-specific cyclic GMP
phosphodiesterase type 6 (PDEdelta) is an Arl3 effector.
Arl3 binds microtubules in a regulated manner to alter
specific aspects of cytokinesis via interactions with
retinitis pigmentosa 2 (RP2). It has been proposed that
RP2 functions in concert with Arl3 to link the cell
membrane and the cytoskeleton in photoreceptors as part
of the cell signaling or vesicular transport machinery.
In mice, the absence of Arl3 is associated with abnormal
epithelial cell proliferation and cyst formation.
Length = 174
Score = 29.3 bits (66), Expect = 1.6
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 247 LLGLNGAGKTTTFKMLTGA----IKPTSG 271
LLGL+ AGKTT K L I PT G
Sbjct: 20 LLGLDNAGKTTILKQLASEDISHITPTQG 48
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 29.7 bits (67), Expect = 1.7
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 240 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 283
G+G + G +G+GKTT +++ G +P G + ++ DS
Sbjct: 22 GQGVT-AIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDS 64
>gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein
VexC; Provisional.
Length = 213
Score = 29.3 bits (65), Expect = 1.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+++ F +G E G+L G+GKTT ++L G P G+
Sbjct: 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGD 43
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 29.6 bits (67), Expect = 1.8
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 210 GDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 269
G L++ + K Y + +NQ+ + G+ ++G +G GK+T ++L G P+
Sbjct: 10 GTPLLLNAVSKRYGE----RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS 65
Query: 270 SG 271
+G
Sbjct: 66 AG 67
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 29.3 bits (66), Expect = 1.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 228 TKPAVNQISFGVGRGECFGLLGLNGAGKTTT 258
+P V+ +S + RG L+G +G+GK+ T
Sbjct: 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLT 45
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 29.9 bits (68), Expect = 1.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
S P + S + G+ L+G +G+GK+T K++ G +P SG
Sbjct: 488 SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 29.6 bits (67), Expect = 1.9
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
+P +N ISF + G+ ++G +GAGK+T ++L SG+ + IRD
Sbjct: 276 RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRD 329
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 29.2 bits (66), Expect = 1.9
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 226 KDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 269
+ P + S V GE +LG G+G +T K L +
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGN 60
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 29.3 bits (66), Expect = 1.9
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+ VK L K + ++ I V GE ++G +G+GKTT + + +P +G
Sbjct: 4 IEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGT 59
Query: 273 AYVMNHSI 280
V + +I
Sbjct: 60 IRVGDITI 67
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 29.0 bits (65), Expect = 2.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+GE ++G +G+GK+T ++ G P SG
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSG 53
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 29.5 bits (67), Expect = 2.3
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 247 LLGLNGAGKTTT 258
L G NGAGK+TT
Sbjct: 32 LSGGNGAGKSTT 43
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 29.0 bits (65), Expect = 2.3
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+S V GE L+G NGAGK+T + G SG
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSG 53
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 29.2 bits (66), Expect = 2.4
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 13/49 (26%)
Query: 211 DVLVVKRLFKIYANSKD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTT 258
+VL V LF + K KP V I F +G+NG GKTTT
Sbjct: 120 EVLSVGDLFDLIEEIKSKGKPVV--IVF----------VGVNGTGKTTT 156
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 29.1 bits (65), Expect = 2.4
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF 259
+ VK L Y + + ISF + G+ GLLG G+GK+T
Sbjct: 3 MTVKDLTAKYTEGGNA--VLENISFSISPGQRVGLLGRTGSGKSTLL 47
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 29.2 bits (66), Expect = 2.5
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 25/71 (35%)
Query: 241 RGECFGLLGLNGAGKTTT-------FKMLTGAIKPT--SGNAY----------------V 275
RG F L+G G GKTTT M GA K + ++Y V
Sbjct: 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 314
Query: 276 MNHSIRDSMDL 286
H+++D+ DL
Sbjct: 315 PVHAVKDAADL 325
>gnl|CDD|236563 PRK09554, feoB, ferrous iron transport protein B; Reviewed.
Length = 772
Score = 29.3 bits (66), Expect = 2.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 246 GLLGLNGAGKTTTFKMLTGA 265
GL+G +GKTT F LTGA
Sbjct: 7 GLIGNPNSGKTTLFNQLTGA 26
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 28.9 bits (65), Expect = 3.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 216 KRLFKIYANSKDTKPAVNQISFGVGR-GECFGLLGLNGAGKTT 257
RL + + K + +S GV + GE ++G +GAGKTT
Sbjct: 25 SRLRGCFCRERPRKHLLKNVS-GVAKPGELLAVMGSSGAGKTT 66
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 29.0 bits (65), Expect = 3.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264
V+ S + GE L+GL+G+GK+T + + G
Sbjct: 39 GVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNG 72
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 29.2 bits (65), Expect = 3.6
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 224 NSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
+SK +KP ++ I+ + G ++G G GKT+ + G + ++ V+ S+
Sbjct: 625 DSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSV 681
>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta), together with SR-alpha, forms the
heterodimeric signal recognition particle (SRP). Signal
recognition particle receptor, beta subunit (SR-beta).
SR-beta and SR-alpha form the heterodimeric signal
recognition particle (SRP or SR) receptor that binds SRP
to regulate protein translocation across the ER
membrane. Nascent polypeptide chains are synthesized
with an N-terminal hydrophobic signal sequence that
binds SRP54, a component of the SRP. SRP directs
targeting of the ribosome-nascent chain complex (RNC) to
the ER membrane via interaction with the SR, which is
localized to the ER membrane. The RNC is then
transferred to the protein-conducting channel, or
translocon, which facilitates polypeptide translation
across the ER membrane or integration into the ER
membrane. SR-beta is found only in eukaryotes; it is
believed to control the release of the signal sequence
from SRP54 upon binding of the ribosome to the
translocon. High expression of SR-beta has been observed
in human colon cancer, suggesting it may play a role in
the development of this type of cancer.
Length = 202
Score = 28.4 bits (64), Expect = 3.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 247 LLGLNGAGKTTTFKMLTGAIKPTS 270
LLG + +GKT F LT ++
Sbjct: 5 LLGPSDSGKTALFTKLTTGKVRST 28
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 27.7 bits (62), Expect = 3.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 256 TTTFKMLTGAIKPTSGNAYVMNHSIRD 282
+T K++TG ++PTSG +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTG 27
>gnl|CDD|223615 COG0541, Ffh, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 451
Score = 28.7 bits (65), Expect = 4.0
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 247 LLGLNGAGKTTT 258
++GL G+GKTTT
Sbjct: 105 MVGLQGSGKTTT 116
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 28.9 bits (65), Expect = 4.1
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
P + ++F + GE L+G +G+GK+T +L +PT G
Sbjct: 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG 536
>gnl|CDD|226459 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 28.7 bits (64), Expect = 4.1
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 234 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVMNHSIRDSMD 285
+ G E ++G NG+GKTT + A+ Y+ S++ +D
Sbjct: 16 NLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFIDFFIYLRFKSLKIELD 68
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 28.9 bits (65), Expect = 4.2
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 224 NSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN--------AYV 275
+SK +P ++ I+ V G ++G G GKT+ + G + P S AYV
Sbjct: 625 DSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYV 684
Query: 276 ------MNHSIRDSM 284
N ++RD++
Sbjct: 685 PQVSWIFNATVRDNI 699
>gnl|CDD|236780 PRK10867, PRK10867, signal recognition particle protein;
Provisional.
Length = 433
Score = 28.5 bits (65), Expect = 4.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 247 LLGLNGAGKTTT 258
++GL GAGKTTT
Sbjct: 105 MVGLQGAGKTTT 116
>gnl|CDD|153344 cd07660, BAR_Arfaptin, The Bin/Amphiphysin/Rvs (BAR) domain of
Arfaptin. The BAR domain of Arfaptin-like proteins,
also called the Arfaptin domain, is a dimerization and
lipid binding module that can detect and drive membrane
curvature. Arfaptins are ubiquitously expressed proteins
implicated in mediating cross-talk between Rac, a member
of the Rho family GTPases, and Arf (ADP-ribosylation
factor) small GTPases. Arfaptins bind to GTP-bound Arf1,
Arf5, and Arf6, with strongest binding to GTP-Arf1.
Arfaptins also bind to Rac-GTP and Rac-GDP with similar
affinities. The Arfs are thought to bind to the same
surface as Rac, and their binding is mutually exclusive.
Mammals contain at least two isoforms of Arfaptin.
Arfaptin 1 has been shown to inhibit the activation of
Arf-dependent phospholipase D (PLD) and the secretion of
matrix metalloproteinase-9 (MMP-9), an enzyme implicated
in cancer invasiveness and metastasis. Arfaptin 2
regulates the aggregation of the protein huntingtin,
which is implicated in Huntington disease. Arfaptins are
single-domain proteins with a BAR-like structure. BAR
domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions.
Length = 201
Score = 27.7 bits (62), Expect = 5.6
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 69 LGCFNLFVGLITTLTVTVLDNLQDDTLEYVNQY 101
LG N FV + TL + +DTL V QY
Sbjct: 78 LGALNFFVSSLNTLV----NKTMEDTLMTVKQY 106
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 27.9 bits (63), Expect = 5.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 220 KIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
K Y + I V GE L+G +G GK+T +M+ G + TSG
Sbjct: 11 KSYDGKT---QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG 59
>gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only].
Length = 411
Score = 28.0 bits (63), Expect = 6.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 245 FGLLGLNGAGKTTTFKMLTGAIKP 268
L+G AGK+T F LTGA
Sbjct: 195 VALVGYTNAGKSTLFNALTGADVY 218
>gnl|CDD|234232 TIGR03499, FlhF, flagellar biosynthetic protein FlhF. [Cellular
processes, Chemotaxis and motility].
Length = 283
Score = 27.7 bits (62), Expect = 6.3
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 241 RGECFGLLGLNGAGKTTT-FKM 261
RG L+G G GKTTT K+
Sbjct: 194 RGGVIALVGPTGVGKTTTLAKL 215
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 27.6 bits (62), Expect = 6.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 224 NSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264
N +N +S V G+ +LG +G+GKTT ++G
Sbjct: 15 NWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISG 55
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 27.9 bits (62), Expect = 6.4
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 232 VNQISFGVGRGECFGLLGLNGAGKTTTFKML 262
++ ++F V GE L+G +G+GK+T ++L
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRIL 46
>gnl|CDD|153204 cd04932, ACT_AKiii-LysC-EC_1, ACT domains located C-terminal to the
catalytic domain of the lysine-sensitive aspartokinase
isoenzyme AKIII. This CD includes the first of two ACT
domains located C-terminal to the catalytic domain of
the lysine-sensitive aspartokinase isoenzyme AKIII, a
monofunctional class enzyme found in bacteria
(Escherichia coli (EC) LysC). Aspartokinase is the first
enzyme in the aspartate metabolic pathway and catalyzes
the conversion of aspartate and ATP to aspartylphosphate
and ADP. The E. coli AKIII (LysC) binds two feedback
allosteric inhibitor lysine molecules at the dimer
interface located between the ACT1 domain of two
subunits. Members of this CD belong to the superfamily
of ACT regulatory domains.
Length = 75
Score = 26.2 bits (58), Expect = 6.7
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 51 LMYPCSFIFSVPSTAFVVLGCFNLFVGLITTLTVTV---LDNLQDDTLEYVNQYL 102
+++ F+ V F +L N+ V LITT ++V LDN + + + Q L
Sbjct: 11 MLHAQGFLAKV----FGILAKHNISVDLITTSEISVALTLDNTGSTSDQLLTQAL 61
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 27.4 bits (61), Expect = 7.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 285
V RGE L+G +G+GK+T +L G +SG ++ + MD
Sbjct: 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLH-QMD 78
>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle
coats. Sar1 is an essential component of COPII vesicle
coats involved in export of cargo from the ER. The
GTPase activity of Sar1 functions as a molecular switch
to control protein-protein and protein-lipid
interactions that direct vesicle budding from the ER.
Activation of the GDP to the GTP-bound form of Sar1
involves the membrane-associated guanine nucleotide
exchange factor (GEF) Sec12. Sar1 is unlike all Ras
superfamily GTPases that use either myristoyl or prenyl
groups to direct membrane association and function, in
that Sar1 lacks such modification. Instead, Sar1
contains a unique nine-amino-acid N-terminal extension.
This extension contains an evolutionarily conserved
cluster of bulky hydrophobic amino acids, referred to as
the Sar1-N-terminal activation recruitment (STAR) motif.
The STAR motif mediates the recruitment of Sar1 to ER
membranes and facilitates its interaction with mammalian
Sec12 GEF leading to activation.
Length = 191
Score = 27.2 bits (61), Expect = 7.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 247 LLGLNGAGKTTTFKML 262
LGL+ AGKTT ML
Sbjct: 24 FLGLDNAGKTTLLHML 39
>gnl|CDD|206666 cd01878, HflX, HflX GTPase family. HflX subfamily. A distinct
conserved domain with a glycine-rich segment N-terminal
of the GTPase domain characterizes the HflX subfamily.
The E. coli HflX has been implicated in the control of
the lambda cII repressor proteolysis, but the actual
biological functions of these GTPases remain unclear.
HflX is widespread, but not universally represented in
all three superkingdoms.
Length = 204
Score = 27.4 bits (62), Expect = 7.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 253 AGKTTTFKMLTGA 265
AGK+T F LTGA
Sbjct: 52 AGKSTLFNALTGA 64
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 27.6 bits (62), Expect = 7.9
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 244 CFGLLGLNGAGKTTTFKML---TGAIK 267
L+G +G+GKTT + L TGAI
Sbjct: 1 NIALVGHSGSGKTTLAEALLYATGAID 27
>gnl|CDD|217785 pfam03901, Glyco_transf_22, Alg9-like mannosyltransferase family.
Members of this family are mannosyltransferase enzymes.
At least some members are localised in endoplasmic
reticulum and involved in GPI anchor biosynthesis.
Length = 412
Score = 27.7 bits (62), Expect = 8.6
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 1 VYSYDLLCYTFSSTLVVFIFLAFKEEAYISPQNLPGLVALLLCYGCAVIPLMYPCSFIFS 60
V LL L V+ KEE ++ P + L+C A+ + S
Sbjct: 287 VSRLLLLLAPILIWLFVYSLQPHKEERFLYP------IYPLICLSAAIALDRLSRKWKVS 340
Query: 61 VPSTAFVVLGCFNLFVGLITTL 82
+ +L FN+ + L L
Sbjct: 341 KKLSLLFLLLFFNVSLALFFGL 362
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the F0F1-ATPase,
in that they both are proton driven rotary molecular
devices. However, the main function of the bacterial
flagellar motor is to rotate the flagellar filament for
cell motility. Intracellular pathogens such as
Salmonella and Chlamydia also have proteins which are
similar to the flagellar-specific ATPase, but function
in the secretion of virulence-related proteins via the
type III secretory pathway.
Length = 326
Score = 27.2 bits (61), Expect = 9.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 237 FGVGRGECFGLLGLNGAGKTTTFKMLT 263
VG+G+ G+ +G GK+T M+
Sbjct: 64 LTVGKGQRLGIFAGSGVGKSTLLGMIA 90
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 27.5 bits (62), Expect = 9.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 264
S D K ++F + G+ L+G +GAGKT+ L G
Sbjct: 359 SPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG 398
>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is a
important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP.
Length = 154
Score = 26.7 bits (60), Expect = 10.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 247 LLGLNGAGKTTTFKML 262
L+G+ GAGKTT ++L
Sbjct: 4 LIGMMGAGKTTVGRLL 19
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.140 0.433
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,525,633
Number of extensions: 1382507
Number of successful extensions: 2417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2408
Number of HSP's successfully gapped: 366
Length of query: 288
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 192
Effective length of database: 6,679,618
Effective search space: 1282486656
Effective search space used: 1282486656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (25.8 bits)