RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7219
(288 letters)
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 75.4 bits (185), Expect = 1e-16
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+VVK L K K + ISF + GE FGL+G NGAGKTTT ++++ IKP+SG
Sbjct: 3 VVVKDLRKRI----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 273 AYVMNHSIRDSMDLVR 288
V ++ + VR
Sbjct: 59 VTVFGKNVVEEPHEVR 74
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 71.9 bits (176), Expect = 2e-15
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 211 DVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 270
++L + + K + K A++ +S V +G+ ++G NG+GK+T ++TG +K
Sbjct: 3 EILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE 58
Query: 271 GNAYVMNHSIRDSM 284
G Y N I +
Sbjct: 59 GRVYFENKDITNKE 72
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 67.0 bits (163), Expect = 1e-13
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
++VK + K++ K A++ ++ + GE FG+LG +GAGKTT +++ G P++G
Sbjct: 4 IIVKNVSKVFKKGK--VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 273 AYVMNHSI 280
Y + +
Sbjct: 62 LYFDDRLV 69
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 66.4 bits (162), Expect = 1e-13
Identities = 18/70 (25%), Positives = 36/70 (51%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+ + + K++ T A+N +S V G+ +G++G +GAGK+T + + +PT G+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 273 AYVMNHSIRD 282
V +
Sbjct: 62 VLVDGQELTT 71
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 66.4 bits (162), Expect = 1e-13
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+ +K + K Y ++ A+ ++ + GE ++G +G+GK+T ++ KPT G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 273 AYVMNHSIRD 282
Y+ N D
Sbjct: 62 VYIDNIKTND 71
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 65.7 bits (160), Expect = 2e-13
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
VL V+ L Y A+ I V RG+ L+G NGAGKTTT + G ++ G
Sbjct: 6 VLEVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61
Query: 272 NAYVMNHSIRDSMDLVR 288
I + V
Sbjct: 62 KIIFNGQDITNKPAHVI 78
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 64.6 bits (157), Expect = 4e-13
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
L ++ L Y KP + +I+ + +G G NG GKTT K ++ +KP G
Sbjct: 3 LEIRDLSVGY-----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 57
Query: 273 AYVMNHSIRD 282
I
Sbjct: 58 IIYNGVPITK 67
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 65.2 bits (159), Expect = 5e-13
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
L V L K Y + +S G+ ++G +G+GK+T + + KP+ G
Sbjct: 3 LHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 273 AYVMNHSIRDSMD 285
V +I D
Sbjct: 59 IIVNGQNINLVRD 71
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 63.6 bits (155), Expect = 1e-12
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
++ L K + N AVN+++ + GE LLG +G GKTTT +M+ G +PT G Y
Sbjct: 9 LENLTKRFGN----FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 275 VMNH 278
+
Sbjct: 65 FGDR 68
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 61.9 bits (150), Expect = 5e-12
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 229 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
+ +S V GE L+G NGAGK+T + G + G+ +
Sbjct: 12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEA 64
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 61.6 bits (149), Expect = 6e-12
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
++ ++ L + + N +++ +S V GE F +LG GAGKT +++ G P SG
Sbjct: 1 MIEIESLSRKWKN-----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG 55
Query: 272 NAYVMNHSIRDSMDLVR 288
+ + D
Sbjct: 56 RILLDGKDVTDLSPEKH 72
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 60.7 bits (147), Expect = 1e-11
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+ + ++K++ AV ++S V GE LLG +G GKTTT +M+ G +P+ G
Sbjct: 3 GVRLVDVWKVF----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG 58
Query: 272 NAYVMNHSI 280
Y+ + +
Sbjct: 59 QIYIGDKLV 67
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 60.3 bits (146), Expect = 2e-11
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 212 VLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 271
+L + + Y D++ + ISF G +G GK+T F +L +PT+G
Sbjct: 1 MLSARHVDFAY---DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG 57
Query: 272 NAYVMNHSIRD 282
+ I +
Sbjct: 58 EITIDGQPIDN 68
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 60.0 bits (145), Expect = 2e-11
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 215 VKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 274
++ + K + I+ + GE +G +G GK+T +M+ G TSG+ +
Sbjct: 3 LQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 275 VMNHSIRD 282
+ + D
Sbjct: 59 IGEKRMND 66
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 60.3 bits (146), Expect = 3e-11
Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 13/75 (17%)
Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG------------- 271
P + I+ + +GE + G G+GKT+ ++ G ++ + G
Sbjct: 45 CLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ 104
Query: 272 NAYVMNHSIRDSMDL 286
+++M +I++++
Sbjct: 105 FSWIMPGTIKENIIF 119
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 57.9 bits (140), Expect = 1e-10
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+ + + Y +++ P + I+ + +GE +G++G GK+T ++ TSG
Sbjct: 17 IDIDHVSFQYNDNE--APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 74
Query: 273 AYVMNHSIRD 282
+ H+I+D
Sbjct: 75 ILIDGHNIKD 84
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 56.8 bits (137), Expect = 3e-10
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 194 DDVRKERERVERGADSGDVLVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGA 253
D+ ++ +R GD+ + + Y + PA+ I+ + G+ L+G +G+
Sbjct: 1 DEGKRVIDRAT-----GDL-EFRNVTFTYPGRE--VPALRNINLKIPAGKTVALVGRSGS 52
Query: 254 GKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 284
GK+T ++T G+ + H +R+
Sbjct: 53 GKSTIASLITRFYDIDEGHILMDGHDLREYT 83
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 54.1 bits (130), Expect = 3e-09
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 213 LVVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 272
+ + + Y N D + ++F + GE L+G NG+GK+T +L +PT G
Sbjct: 12 VQFQDVSFAYPNRPD-VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70
Query: 273 AYVMNHSIRD 282
+ +
Sbjct: 71 LLLDGKPLPQ 80
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 53.1 bits (127), Expect = 6e-09
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 235 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
+ F +G + LLG GAGK+ +++ G +KP G + I
Sbjct: 18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 53.0 bits (127), Expect = 7e-09
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 225 SKDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
D+ ++ I+ + +GE G++G +G+GK+T K++ P +G + H +
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLAL 69
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 42.7 bits (99), Expect = 1e-05
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 246 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 285
+ G G GKTT K + + + + ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKK 43
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 35.2 bits (80), Expect = 0.006
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 246 GLLGLNGAGKTTTFKMLTGAIKPTSGN 272
G++G+ GK+T F+ +T ++ N
Sbjct: 14 GIVGMPNVGKSTFFRAITKSVLGNPAN 40
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 31.1 bits (70), Expect = 0.13
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 11/41 (26%)
Query: 246 GLLGLNGAGKTTTFKMLTGA-----------IKPTSGNAYV 275
G++GL GK+T F LT A I+P +G +
Sbjct: 6 GIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM 46
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 31.0 bits (69), Expect = 0.15
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 246 GLLGLNGAGKTTTFKMLTGAIKPTSGN 272
G++G GK+T F T N
Sbjct: 4 GVVGKPNVGKSTFFSAATLV-DVEIAN 29
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 30.9 bits (68), Expect = 0.15
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 231 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 270
+ + G ++G NG+GK++ + +
Sbjct: 13 SHSDTVVEFKEGI-NLIIGQNGSGKSSLLDAILVGLYWPL 51
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 30.1 bits (67), Expect = 0.25
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 247 LLGLNGAGKTTTFKML-TGAIKPTSG 271
LLG +GK+T K + + TSG
Sbjct: 11 LLGAGESGKSTIVKQMRILHVVLTSG 36
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 29.3 bits (64), Expect = 0.35
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 241 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 280
+G L G +GK + L + G + +
Sbjct: 5 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 44
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 29.2 bits (64), Expect = 0.37
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 246 GLLGLNGAGKTTTFKMLTGA 265
GL+G AGK++ +T A
Sbjct: 5 GLVGYPNAGKSSLLAAMTRA 24
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 29.3 bits (65), Expect = 0.39
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 247 LLGLNGAGKTTT 258
++G+NG GKTTT
Sbjct: 14 MVGVNGVGKTTT 25
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 29.2 bits (64), Expect = 0.42
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 247 LLGLNGAGKTTTFKML 262
+ G+ G G TT+ ++
Sbjct: 6 VTGVPGVGSTTSSQLA 21
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 29.3 bits (65), Expect = 0.43
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 247 LLGLNGAGKTTT 258
++G+NG GKTT+
Sbjct: 16 VVGVNGTGKTTS 27
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 29.3 bits (65), Expect = 0.43
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 247 LLGLNGAGKTTT 258
L+GL G+GKTTT
Sbjct: 15 LVGLQGSGKTTT 26
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 29.3 bits (65), Expect = 0.44
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 247 LLGLNGAGKTTT 258
++G+NG GKTTT
Sbjct: 11 VVGVNGVGKTTT 22
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 29.2 bits (64), Expect = 0.45
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 247 LLGLNGAGKTTTFKML 262
+ G+ G GK+T +
Sbjct: 6 VTGIPGVGKSTVLAKV 21
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 29.4 bits (65), Expect = 0.45
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 247 LLGLNGAGKTTT 258
L+G+ G GK TT
Sbjct: 17 LVGVQGTGKATT 28
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 29.2 bits (64), Expect = 0.50
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 247 LLGLNGAGKTTTFKMLTG----AIKPTSGNAYVMNH 278
+ G +GKT+ +LT + ++
Sbjct: 8 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY 43
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 28.7 bits (63), Expect = 0.53
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 246 GLLGLNGAGKTTTFKMLTGA 265
GL+G GK+T +++ A
Sbjct: 5 GLVGFPSVGKSTLLSVVSSA 24
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 28.8 bits (63), Expect = 0.55
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 247 LLGLNGAGKTTTFKMLTGAIKPTSG 271
LLG +GK+T K + + +G
Sbjct: 7 LLGAGESGKSTIVKQMKIIHEAGTG 31
>d1etea_ a.26.1.2 (A:) Flt3 ligand {Human (Homo sapiens) [TaxId:
9606]}
Length = 134
Score = 27.6 bits (61), Expect = 0.93
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 55 CSFIFSVPSTAFVV-LGCFNLFVGLITTLTVTVLDNLQDDTL 95
CSF S S+ F V + L L+ VTV NLQDD L
Sbjct: 4 CSFQHSPISSDFAVKIR--ELSDYLLQDYPVTVASNLQDDEL 43
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 28.0 bits (61), Expect = 1.0
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 247 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 277
++GL GKT K LT + N
Sbjct: 7 MVGLPARGKTYISKKLTRYLNFIGVPTREFN 37
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 28.1 bits (62), Expect = 1.2
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 239 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 276
+GRG+ ++ AGKT + + +I + +M
Sbjct: 40 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 77
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 27.3 bits (59), Expect = 1.3
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 247 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278
+LGL+ AGKTT K G T N
Sbjct: 7 MLGLDNAGKTTILKKFNGEDVDTISPTLGFNI 38
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 27.6 bits (60), Expect = 1.5
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 247 LLGLNGAGKTTTFKMLTGA 265
L G G+GKT+ +
Sbjct: 37 LGGQPGSGKTSLRSAIFEE 55
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.2 bits (59), Expect = 2.0
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 247 LLGLNGAGKTT---TFKMLTGAIKPTSG 271
LLG +GK+T +++ G+ PT+G
Sbjct: 7 LLGTGESGKSTFIKQMRIIHGSGVPTTG 34
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.2 bits (59), Expect = 2.1
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 247 LLGLNGAGKTTTFKMLTG--AIKPTSG 271
LLG +GK+T K + PT G
Sbjct: 7 LLGAGESGKSTFLKQMRIIHGQDPTKG 33
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 26.9 bits (58), Expect = 2.2
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 247 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 285
++GL+ AGKTT + + N +
Sbjct: 20 IVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 58
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 27.0 bits (58), Expect = 2.3
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 214 VVKRLFKIYANSKDTKPAVNQISFGVGRGECFGLL--GLNGAGKTTTFKMLTGAIKPTSG 271
V +L AN +++K + + G G + G G GKTT ++ +
Sbjct: 22 SVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 81
Query: 272 NAYVMNHSIRDSMD 285
+ + ++
Sbjct: 82 EQNASDVRSKTLLN 95
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 26.9 bits (58), Expect = 2.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 247 LLGLNGAGKTTTFKML 262
L+GL G+GK+T + L
Sbjct: 6 LVGLPGSGKSTIGRRL 21
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 26.8 bits (58), Expect = 2.4
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 247 LLGLNGAGKTTTFKML 262
++G G G TT + L
Sbjct: 7 MVGARGCGMTTVGREL 22
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 26.8 bits (58), Expect = 2.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 240 GRGECFGLLGLNGAGKTTTFKML 262
GRG+ + GL+ GKTT +L
Sbjct: 1 GRGKLILIEGLDRTGKTTQCNIL 23
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 26.6 bits (57), Expect = 2.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 247 LLGLNGAGKTTTFKML 262
L+G GAGK+T + L
Sbjct: 7 LVGPMGAGKSTIGRQL 22
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 26.4 bits (57), Expect = 2.7
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 247 LLGLNGAGKTTTFKML 262
+G G+GK+T + L
Sbjct: 5 FIGFMGSGKSTLARAL 20
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 27.0 bits (59), Expect = 3.3
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 240 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 282
+C + G +GAGKT K + + S N I
Sbjct: 84 QENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISK 126
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 26.6 bits (57), Expect = 3.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 241 RGECFGLLGLNGAGKTTTFKML 262
RG L GL+GAGKTT L
Sbjct: 18 RGCTVWLTGLSGAGKTTVSMAL 39
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 26.6 bits (57), Expect = 3.3
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 246 GLLGLNGAGKTTTFKMLTGA 265
G + GK+T LTG
Sbjct: 4 IFAGRSNVGKSTLIYRLTGK 23
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 26.6 bits (57), Expect = 3.4
Identities = 10/39 (25%), Positives = 11/39 (28%)
Query: 247 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 285
LGL+ AGKTT ML
Sbjct: 18 FLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG 56
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 26.2 bits (56), Expect = 3.5
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 247 LLGLNGAGKTTTFKMLTGA----IKPTSGNAYVMNH 278
LGL+ AGKTT ML ++PT
Sbjct: 5 FLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELA 40
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 26.1 bits (56), Expect = 3.9
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 245 FGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278
+G GKTT K L A+ ++ H
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 38
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.1 bits (56), Expect = 4.0
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 247 LLGLNGAGKTTTFKMLTGA 265
+GL +GKT F L
Sbjct: 5 FVGLCDSGKTLLFVRLLTG 23
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 26.2 bits (56), Expect = 4.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 247 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278
+LGL+GAGKTT L T+ N
Sbjct: 10 ILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV 41
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 26.1 bits (56), Expect = 4.4
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 247 LLGLNGAGKTTTFKML 262
+ G G GKT+ +M+
Sbjct: 10 ITGTPGTGKTSMAEMI 25
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 26.1 bits (56), Expect = 4.5
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 241 RGECFGLLGLNGAGKTTTFKML 262
G L G G+GK+T + L
Sbjct: 3 GGNILLLSGHPGSGKSTIAEAL 24
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 25.8 bits (55), Expect = 4.7
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 247 LLGLNGAGKTTTFKML 262
+G G+GK+T +
Sbjct: 7 TIGCPGSGKSTWAREF 22
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 25.9 bits (55), Expect = 5.2
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 246 GLLGLNGAGKTTTFKMLTGA 265
++G GK+T L G
Sbjct: 9 AIVGKPNVGKSTLLNNLLGV 28
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 25.8 bits (55), Expect = 5.3
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 245 FGLLGLNGAGKTTTFKML 262
+ L+G++G+GK+ +
Sbjct: 9 YVLMGVSGSGKSAVASEV 26
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 25.8 bits (55), Expect = 5.3
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 247 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 278
++GL+ AGKTT L T+ N
Sbjct: 5 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 36
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 25.7 bits (55), Expect = 5.5
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 246 GLLGLNGAGKTTTFKMLTGAIKP 268
L G G GKTT + +K
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKS 27
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 25.7 bits (55), Expect = 5.5
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 247 LLGLNGAGKTTTFKMLTG 264
LLGL+ AGKTT K L
Sbjct: 21 LLGLDNAGKTTLLKQLAS 38
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 25.9 bits (56), Expect = 5.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 247 LLGLNGAGKTTTFKMLTG 264
++G G GK++T + G
Sbjct: 37 VMGKGGVGKSSTVNSIIG 54
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 25.8 bits (55), Expect = 6.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 247 LLGLNGAGKTTTFKML 262
+ G G GK+TT K L
Sbjct: 7 ITGPAGVGKSTTCKRL 22
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 25.3 bits (54), Expect = 6.5
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 247 LLGLNGAGKTTTFKML 262
L G G GKTT K L
Sbjct: 9 LTGTPGVGKTTLGKEL 24
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 25.8 bits (56), Expect = 6.8
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 240 GRGECFGLLGLNGAGKTTTFKML 262
+ + + G +GAGKT K +
Sbjct: 123 RQNQSLLITGESGAGKTENTKKV 145
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 25.9 bits (56), Expect = 6.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 240 GRGECFGLLGLNGAGKTTTFKML 262
R + + G +GAGKT + K
Sbjct: 92 ERNQSIIVSGESGAGKTVSAKYA 114
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 25.4 bits (54), Expect = 6.9
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 247 LLGLNGAGKTTTFKMLTG 264
L+GL +GKTT ++
Sbjct: 7 LVGLQYSGKTTFVNVIAS 24
>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 380
Score = 26.0 bits (56), Expect = 7.0
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 178 CFTRSNPHPVPVSLEEDDVRKERERVERGADSGDVLVV 215
R H ++D R E +ER A+ DV++V
Sbjct: 2 KVPRITTHYTIYPRDQDK-RWEGVNMERFAEEADVVIV 38
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 25.4 bits (54), Expect = 7.1
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 246 GLLGLNGAGKTTTFKMLTGA 265
++G GK+T L G
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQ 28
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 25.1 bits (53), Expect = 7.6
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 246 GLLGLNGAGKTTTFKMLTGA 265
+ G AGK++ L G
Sbjct: 5 VIAGRPNAGKSSLLNALAGR 24
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 24.9 bits (53), Expect = 8.2
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 247 LLGLNGAGKTTTFKMLTGA 265
++G GK+T L
Sbjct: 5 IVGKPNVGKSTLLNRLLNE 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.140 0.433
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,053,271
Number of extensions: 46848
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 83
Length of query: 288
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,254,276
Effective search space: 255872304
Effective search space used: 255872304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.8 bits)