BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy722
(416 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 249 bits (635), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 151/411 (36%), Positives = 227/411 (55%), Gaps = 23/411 (5%)
Query: 9 SRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDXXXXXXXXXXTEQP 66
+R Q NS+TS++DA+ VYGS P+LA++LR G + V + D +
Sbjct: 176 ARDQINSVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNMKPS 235
Query: 67 DDGCIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQE 126
I + CF AGD+R +EQ+ L +HTL +REHNR+A EL +NPHW E+LYQE
Sbjct: 236 PCEFINTTARVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEKLYQE 295
Query: 127 TRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAF 186
R IL A +Q IT+ ++LP +LG + MQK+ ++ GY++ DP I T AF
Sbjct: 296 ARKILGAFIQIITFRDYLPIVLGSE-MQKW--IPRYQGYNNSVDPRISNVF-----TFAF 347
Query: 187 RFGHSLLPKSMERWSVTNKFI---ASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPM 243
RFGH +P ++ R + A +F + + K G +D + G+L + + M
Sbjct: 348 RFGHMEVPSTVSRLDENYQPRGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLM 407
Query: 244 DD--AITTQVTNHLFQEPTHE-YGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTS 300
+ +T+++ N LFQ PTH+ +G DLA+INLQR R+HG+P Y+ +R FC L T
Sbjct: 408 NQNKMVTSELRNKLFQ-PTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKG 466
Query: 301 LLKSLDNSTV-HRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGD 359
L L N + + DLY P ++D+W G +E + +GP +C++ R F+ ++ GD
Sbjct: 467 LQAVLKNKILAKKLLDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGD 526
Query: 360 RFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPNDY 410
RFW+EN P F+ Q ++KV SR++CDN IT P N+Y
Sbjct: 527 RFWWEN---PGVFTEKQRDSLQKVSFSRLICDNTH--ITKVPLHAFQANNY 572
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 248 bits (633), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 151/411 (36%), Positives = 226/411 (54%), Gaps = 23/411 (5%)
Query: 9 SRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDXXXXXXXXXXTEQP 66
+R Q NS+TS++DA+ VYGS P LA++LR G + V + D +
Sbjct: 176 ARDQINSVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNMKPS 235
Query: 67 DDGCIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQE 126
I + CF AGD+R +EQ+ L +HTL +REHNR+A EL +NPHW E+LYQE
Sbjct: 236 PCEFINTTARVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEKLYQE 295
Query: 127 TRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAF 186
R IL A +Q IT+ ++LP +LG + MQK+ ++ GY++ DP I T AF
Sbjct: 296 ARKILGAFIQIITFRDYLPIVLGSE-MQKW--IPRYQGYNNSVDPRISNVF-----TFAF 347
Query: 187 RFGHSLLPKSMERWSVTNKFI---ASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPM 243
RFGH +P ++ R + A +F + + K G +D + G+L + + M
Sbjct: 348 RFGHMEVPSTVSRLDENYQPRGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLM 407
Query: 244 DD--AITTQVTNHLFQEPTHE-YGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTS 300
+ +T+++ N LFQ PTH+ +G DLA+INLQR R+HG+P Y+ +R FC L T
Sbjct: 408 NQNKMVTSELRNKLFQ-PTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKG 466
Query: 301 LLKSLDNSTV-HRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGD 359
L L N + + DLY P ++D+W G +E + +GP +C++ R F+ ++ GD
Sbjct: 467 LQAVLKNKILAKKLLDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGD 526
Query: 360 RFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPNDY 410
RFW+EN P F+ Q ++KV SR++CDN IT P N+Y
Sbjct: 527 RFWWEN---PGVFTEKQRDSLQKVSFSRLICDNTH--ITKVPLHAFQANNY 572
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 248 bits (632), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 152/415 (36%), Positives = 225/415 (54%), Gaps = 31/415 (7%)
Query: 9 SRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDXXXXXXXXXXTEQP 66
+R Q N++TS++DA+ VYGS P+LA++LR G + V + D +
Sbjct: 176 ARDQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNVKPS 235
Query: 67 DDGCIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQE 126
I + CF AGD+R +EQ+ L +HTL +REHNR+A EL +NPHW E LYQE
Sbjct: 236 PCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEMLYQE 295
Query: 127 TRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAF 186
R IL A +Q IT+ ++LP +LG + MQK+ + GY++ DP I S T AF
Sbjct: 296 ARKILGAFIQIITFRDYLPIVLGSE-MQKW--IPPYQGYNNSVDPRI-----SNVFTFAF 347
Query: 187 RFGHSLLPKSMER-------WSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGML--N 237
RFGH +P ++ R W A +F + + K G +D + G+L N
Sbjct: 348 RFGHMEVPSTVSRLDENYQPWGPE----AELPLHTLFFNTWRIIKDGGIDPLVRGLLAKN 403
Query: 238 QAALPMDDAITTQVTNHLFQEPTHE-YGKDLASINLQRAREHGVPSYSEYREFCNLPPVN 296
+ + +T+++ N LFQ PTH+ +G DLA+INLQR R+HG+P Y+ +R FC L
Sbjct: 404 SKLMNQNKMVTSELRNKLFQ-PTHKVHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPK 462
Query: 297 TWTSLLKSLDNSTV-HRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDL 355
T L L N + + DLY P ++D+W G +E + +GP +C++ R F+ +
Sbjct: 463 TLKGLQAVLKNKVLAKKLLDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQI 522
Query: 356 KRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPNDY 410
+ GDRFW+EN P F+ Q ++KV SR++CDN IT P N+Y
Sbjct: 523 RDGDRFWWEN---PGVFTEKQRDSLQKVSFSRLICDNTH--ITKVPLHAFQANNY 572
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 247 bits (631), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 152/415 (36%), Positives = 224/415 (53%), Gaps = 31/415 (7%)
Query: 9 SRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDXXXXXXXXXXTEQP 66
+R Q N++TS++DA+ VYGS P LA++LR G + V + D +
Sbjct: 176 ARDQINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNVKPS 235
Query: 67 DDGCIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQE 126
I + CF AGD+R +EQ+ L +HTL +REHNR+A EL +NPHW E LYQE
Sbjct: 236 PCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEMLYQE 295
Query: 127 TRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAF 186
R IL A +Q IT+ ++LP +LG + MQK+ + GY++ DP I S T AF
Sbjct: 296 ARKILGAFIQIITFRDYLPIVLGSE-MQKW--IPPYQGYNNSVDPRI-----SNVFTFAF 347
Query: 187 RFGHSLLPKSMER-------WSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGML--N 237
RFGH +P ++ R W A +F + + K G +D + G+L N
Sbjct: 348 RFGHMEVPSTVSRLDENYQPWGPE----AELPLHTLFFNTWRIIKDGGIDPLVRGLLAKN 403
Query: 238 QAALPMDDAITTQVTNHLFQEPTHE-YGKDLASINLQRAREHGVPSYSEYREFCNLPPVN 296
+ + +T+++ N LFQ PTH+ +G DLA+INLQR R+HG+P Y+ +R FC L
Sbjct: 404 SKLMNQNKMVTSELRNKLFQ-PTHKVHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPK 462
Query: 297 TWTSLLKSLDNSTV-HRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDL 355
T L L N + + DLY P ++D+W G +E + +GP +C++ R F+ +
Sbjct: 463 TLKGLQAVLKNKVLAKKLLDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQI 522
Query: 356 KRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPNDY 410
+ GDRFW+EN P F+ Q ++KV SR++CDN IT P N+Y
Sbjct: 523 RDGDRFWWEN---PGVFTEKQRDSLQKVSFSRLICDNTH--ITKVPLHAFQANNY 572
>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|D Chain D, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS0|C Chain C, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|D Chain D, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS1|C Chain C, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|D Chain D, Human Myeloperoxidase Inactivated By Tx5
Length = 467
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 156/421 (37%), Positives = 223/421 (52%), Gaps = 30/421 (7%)
Query: 5 NNKSSRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDXXXXXXXXXX 62
+N + R Q N+LTS++DA+ VYGS LA LR G L V +F+D
Sbjct: 44 SNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDN 103
Query: 63 TEQPDDGCIRPHRD--LYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSD 120
DD C+ +R + CFLAGD R +E L +HTL +REHNR+A EL +NP W
Sbjct: 104 LH--DDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDG 161
Query: 121 EQLYQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHY-GYSDDYDPYIDATIPS 179
E+LYQE R I+ A+VQ ITY ++LP +LG M+KY L Y Y+D DP I
Sbjct: 162 ERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKY---LPTYRSYNDSVDPRIANVF-- 216
Query: 180 AFGTAAFRFGHSLLPKSMERWSVTNKFIASR-----RFSEMFQQPYDLNKPGWLDQYLVG 234
T AFR+GH+L+ M R + N++ S +F + + G +D L G
Sbjct: 217 ---TNAFRYGHTLIQPFMFR--LDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRG 271
Query: 235 ML-NQAALPMDDAITT-QVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNL 292
++ A L + I ++ LF++ G DL ++N+QR+R+HG+P Y+ +R FC L
Sbjct: 272 LMATPAKLNRQNQIAVDEIRERLFEQ-VMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGL 330
Query: 293 PPVNTWTSLLKSLDNSTVHR-YQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIART 351
P T L L N + R + Y P ++D+W GVSE +GP +CII
Sbjct: 331 PQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQ 390
Query: 352 FRDLKRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPNDYT 411
FR L+ GDRFW+EN G FS+ Q Q + ++ L RI+CDN + T+ + M N Y
Sbjct: 391 FRKLRDGDRFWWENEG---VFSMQQRQALAQISLPRIICDNT-GITTVSKNNIFMSNSYP 446
Query: 412 K 412
+
Sbjct: 447 R 447
>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|D Chain D, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
Length = 466
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 156/421 (37%), Positives = 223/421 (52%), Gaps = 30/421 (7%)
Query: 5 NNKSSRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDXXXXXXXXXX 62
+N + R Q N+LTS++DA+ VYGS LA LR G L V +F+D
Sbjct: 44 SNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDN 103
Query: 63 TEQPDDGCIRPHRD--LYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSD 120
DD C+ +R + CFLAGD R +E L +HTL +REHNR+A EL +NP W
Sbjct: 104 LH--DDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDG 161
Query: 121 EQLYQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHY-GYSDDYDPYIDATIPS 179
E+LYQE R I+ A+VQ ITY ++LP +LG M+KY L Y Y+D DP I
Sbjct: 162 ERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKY---LPTYRSYNDSVDPRIANVF-- 216
Query: 180 AFGTAAFRFGHSLLPKSMERWSVTNKFIASR-----RFSEMFQQPYDLNKPGWLDQYLVG 234
T AFR+GH+L+ M R + N++ S +F + + G +D L G
Sbjct: 217 ---TNAFRYGHTLIQPFMFR--LDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRG 271
Query: 235 ML-NQAALPMDDAITT-QVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNL 292
++ A L + I ++ LF++ G DL ++N+QR+R+HG+P Y+ +R FC L
Sbjct: 272 LMATPAKLNRQNQIAVDEIRERLFEQ-VMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGL 330
Query: 293 PPVNTWTSLLKSLDNSTVHR-YQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIART 351
P T L L N + R + Y P ++D+W GVSE +GP +CII
Sbjct: 331 PQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQ 390
Query: 352 FRDLKRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPNDYT 411
FR L+ GDRFW+EN G FS+ Q Q + ++ L RI+CDN + T+ + M N Y
Sbjct: 391 FRKLRDGDRFWWENEG---VFSMQQRQALAQISLPRIICDNT-GITTVSKNNIFMSNSYP 446
Query: 412 K 412
+
Sbjct: 447 R 447
>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|C Chain C, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|D Chain D, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|G Chain G, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|H Chain H, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|K Chain K, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|L Chain L, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|O Chain O, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|P Chain P, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 466
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 156/421 (37%), Positives = 223/421 (52%), Gaps = 30/421 (7%)
Query: 5 NNKSSRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDXXXXXXXXXX 62
+N + R Q N+LTS++DA+ VYGS LA LR G L V +F+D
Sbjct: 44 SNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDN 103
Query: 63 TEQPDDGCIRPHRD--LYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSD 120
DD C+ +R + CFLAGD R +E L +HTL +REHNR+A EL +NP W
Sbjct: 104 LH--DDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDG 161
Query: 121 EQLYQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHY-GYSDDYDPYIDATIPS 179
E+LYQE R I+ A+VQ ITY ++LP +LG M+KY L Y Y+D DP I
Sbjct: 162 ERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKY---LPTYRSYNDSVDPRIANVF-- 216
Query: 180 AFGTAAFRFGHSLLPKSMERWSVTNKFIASR-----RFSEMFQQPYDLNKPGWLDQYLVG 234
T AFR+GH+L+ M R + N++ S +F + + G +D L G
Sbjct: 217 ---TNAFRYGHTLIQPFMFR--LDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRG 271
Query: 235 ML-NQAALPMDDAITT-QVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNL 292
++ A L + I ++ LF++ G DL ++N+QR+R+HG+P Y+ +R FC L
Sbjct: 272 LMATPAKLNRQNQIAVDEIRERLFEQ-VMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGL 330
Query: 293 PPVNTWTSLLKSLDNSTVHR-YQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIART 351
P T L L N + R + Y P ++D+W GVSE +GP +CII
Sbjct: 331 PQPETVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQ 390
Query: 352 FRDLKRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPNDYT 411
FR L+ GDRFW+EN G FS+ Q Q + ++ L RI+CDN + T+ + M N Y
Sbjct: 391 FRKLRDGDRFWWENEG---VFSMQQRQALAQISLPRIICDNT-GITTVSKNNIFMSNSYP 446
Query: 412 K 412
+
Sbjct: 447 R 447
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide
Ions At 2.9a Resolution
Length = 595
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 153/415 (36%), Positives = 226/415 (54%), Gaps = 31/415 (7%)
Query: 9 SRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDXXXXXXXXXXTEQP 66
+R Q N++TS++DA+ VYGS P+LA++LR G + V + D +
Sbjct: 176 AREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPS 235
Query: 67 DDGCIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQE 126
I + CFLAGD R +EQ+ L HTL +REHNR+A EL +NPHW+ E+LYQE
Sbjct: 236 PCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQE 295
Query: 127 TRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAF 186
R IL A +Q IT+ ++LP +LG + MQK+ + GY++ DP I T AF
Sbjct: 296 ARKILGAFIQIITFRDYLPIVLGSE-MQKW--IPPYQGYNNSVDPRISNVF-----TFAF 347
Query: 187 RFGHSLLPKSMER-------WSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQA 239
RFGH +P ++ R W A +F + + K G +D + G+L +
Sbjct: 348 RFGHMEVPSTVSRLDENYQPWGPE----AELPLHTLFFNTWRIIKDGGIDPLVRGLLAKK 403
Query: 240 ALPM--DDAITTQVTNHLFQEPTHE-YGKDLASINLQRAREHGVPSYSEYREFCNLPPVN 296
+ M D +T+++ N LFQ PTH+ +G DLA+INLQR R+HG+P Y+ +R FC L
Sbjct: 404 SKLMNQDKMVTSELRNKLFQ-PTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPK 462
Query: 297 TWTSLLKSLDNSTV-HRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDL 355
T L L N + + DLY P ++D+W G +E + +GP +C++ R F+ +
Sbjct: 463 TLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQI 522
Query: 356 KRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPNDY 410
+ GDRFW+EN P F+ Q ++KV SR++CDN IT P N+Y
Sbjct: 523 RDGDRFWWEN---PGVFTEKQRDSLQKVSFSRLICDNTH--ITKVPLHAFQANNY 572
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 239 bits (609), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 153/415 (36%), Positives = 226/415 (54%), Gaps = 31/415 (7%)
Query: 9 SRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDXXXXXXXXXXTEQP 66
+R Q N++TS++DA+ VYGS P+LA++LR G + V + D +
Sbjct: 164 AREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPS 223
Query: 67 DDGCIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQE 126
I + CFLAGD R +EQ+ L HTL +REHNR+A EL +NPHW+ E+LYQE
Sbjct: 224 PCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQE 283
Query: 127 TRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAF 186
R IL A +Q IT+ ++LP +LG + MQK+ + GY++ DP I T AF
Sbjct: 284 ARKILGAFIQIITFRDYLPIVLGSE-MQKW--IPPYQGYNNSVDPRISNVF-----TFAF 335
Query: 187 RFGHSLLPKSMER-------WSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQA 239
RFGH +P ++ R W A +F + + K G +D + G+L +
Sbjct: 336 RFGHMEVPSTVSRLDENYQPWGPE----AELPLHTLFFNTWRIIKDGGIDPLVRGLLAKK 391
Query: 240 ALPM--DDAITTQVTNHLFQEPTHE-YGKDLASINLQRAREHGVPSYSEYREFCNLPPVN 296
+ M D +T+++ N LFQ PTH+ +G DLA+INLQR R+HG+P Y+ +R FC L
Sbjct: 392 SKLMNQDKMVTSELRNKLFQ-PTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPK 450
Query: 297 TWTSLLKSLDNSTV-HRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDL 355
T L L N + + DLY P ++D+W G +E + +GP +C++ R F+ +
Sbjct: 451 TLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQI 510
Query: 356 KRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPNDY 410
+ GDRFW+EN P F+ Q ++KV SR++CDN IT P N+Y
Sbjct: 511 RDGDRFWWEN---PGVFTEKQRDSLQKVSFSRLICDNTH--ITKVPLHAFQANNY 560
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple
Halide Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Its Catalyzed Product Hypothiocyanate Ion At 2.3a
Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion
Channel Reveals A Preferential Queue Of The Inorganic
Substrates Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex
With Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 238 bits (607), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 153/415 (36%), Positives = 225/415 (54%), Gaps = 31/415 (7%)
Query: 9 SRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDXXXXXXXXXXTEQP 66
+R Q N++TS++DA+ VYGS P LA++LR G + V + D +
Sbjct: 176 AREQINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPS 235
Query: 67 DDGCIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQE 126
I + CFLAGD R +EQ+ L HTL +REHNR+A EL +NPHW+ E+LYQE
Sbjct: 236 PCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQE 295
Query: 127 TRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAF 186
R IL A +Q IT+ ++LP +LG + MQK+ + GY++ DP I T AF
Sbjct: 296 ARKILGAFIQIITFRDYLPIVLGSE-MQKW--IPPYQGYNNSVDPRISNVF-----TFAF 347
Query: 187 RFGHSLLPKSMER-------WSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQA 239
RFGH +P ++ R W A +F + + K G +D + G+L +
Sbjct: 348 RFGHMEVPSTVSRLDENYQPWGPE----AELPLHTLFFNTWRIIKDGGIDPLVRGLLAKK 403
Query: 240 ALPM--DDAITTQVTNHLFQEPTHE-YGKDLASINLQRAREHGVPSYSEYREFCNLPPVN 296
+ M D +T+++ N LFQ PTH+ +G DLA+INLQR R+HG+P Y+ +R FC L
Sbjct: 404 SKLMNQDKMVTSELRNKLFQ-PTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPK 462
Query: 297 TWTSLLKSLDNSTV-HRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDL 355
T L L N + + DLY P ++D+W G +E + +GP +C++ R F+ +
Sbjct: 463 TLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQI 522
Query: 356 KRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPNDY 410
+ GDRFW+EN P F+ Q ++KV SR++CDN IT P N+Y
Sbjct: 523 RDGDRFWWEN---PGVFTEKQRDSLQKVSFSRLICDNTH--ITKVPLHAFQANNY 572
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/415 (36%), Positives = 224/415 (53%), Gaps = 31/415 (7%)
Query: 9 SRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDXXXXXXXXXXTEQP 66
+R Q N++TS++DA+ VYGS P+LA++LR G + V + D +
Sbjct: 164 AREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPS 223
Query: 67 DDGCIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQE 126
I + CFLAGD R +EQ+ L HTL +REHNR+A EL +NPHW+ E+LYQE
Sbjct: 224 PCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQE 283
Query: 127 TRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAF 186
R IL A +Q IT+ ++LP +LG + MQK+ + GY++ DP I T AF
Sbjct: 284 ARKILGAFIQIITFRDYLPIVLGSE-MQKW--IPPYQGYNNSVDPRISNVF-----TFAF 335
Query: 187 RFGHSLLPKSMER-------WSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQA 239
RFGH +P ++ R W A +F + + K G +D G+L +
Sbjct: 336 RFGHMEVPSTVSRLDENYQPWGPE----AELPLHTLFFNTWRIIKDGGIDPLTRGLLAKK 391
Query: 240 ALPM--DDAITTQVTNHLFQEPTHE-YGKDLASINLQRAREHGVPSYSEYREFCNLPPVN 296
+ M D +T+++ N LFQ PTH+ +G DLA+INLQR R+HG+P Y+ +R FC L
Sbjct: 392 SKLMNQDKMVTSELRNKLFQ-PTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPK 450
Query: 297 TWTSLLKSLDNSTV-HRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDL 355
T L L N + + DLY P ++D+W G +E + +GP +C++ R F+ +
Sbjct: 451 TLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQI 510
Query: 356 KRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPNDY 410
+ GDRFW+EN P F+ Q ++K SR++CDN IT P N+Y
Sbjct: 511 RDGDRFWWEN---PGVFTEKQRDSLQKFSFSRLICDNTH--ITKVPLHAFQANNY 560
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 235 bits (600), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 152/415 (36%), Positives = 223/415 (53%), Gaps = 31/415 (7%)
Query: 9 SRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDXXXXXXXXXXTEQP 66
+R Q N++TS++DA+ VYGS P LA++LR G + V + D +
Sbjct: 176 AREQINAVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPS 235
Query: 67 DDGCIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQE 126
I + CFLAGD R +EQ+ L HTL +REHNR+A EL +NPHW+ E+LYQE
Sbjct: 236 PCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQE 295
Query: 127 TRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAF 186
R IL A +Q IT+ ++LP +LG + MQK+ + GY++ DP I T AF
Sbjct: 296 ARKILGAFIQIITFRDYLPIVLGSE-MQKW--IPPYQGYNNSVDPRISNVF-----TFAF 347
Query: 187 RFGHSLLPKSMER-------WSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQA 239
RFGH +P ++ R W A +F + + K G +D G+L +
Sbjct: 348 RFGHMEVPSTVSRLDENYQPWGPE----AELPLHTLFFNTWRIIKDGGIDPLTRGLLAKK 403
Query: 240 ALPM--DDAITTQVTNHLFQEPTHE-YGKDLASINLQRAREHGVPSYSEYREFCNLPPVN 296
+ M D +T+++ N LFQ PTH+ +G DLA+INLQR R+HG+P Y+ +R FC L
Sbjct: 404 SKLMNQDKMVTSELRNKLFQ-PTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPK 462
Query: 297 TWTSLLKSLDNSTV-HRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDL 355
T L L N + + DLY P ++D+W G +E + +GP +C++ R F+ +
Sbjct: 463 TLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQI 522
Query: 356 KRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPNDY 410
+ GDRFW+EN P F+ Q ++K SR++CDN IT P N+Y
Sbjct: 523 RDGDRFWWEN---PGVFTEKQRDSLQKFSFSRLICDNTH--ITKVPLHAFQANNY 572
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 233 bits (594), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 151/415 (36%), Positives = 224/415 (53%), Gaps = 31/415 (7%)
Query: 9 SRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDXXXXXXXXXXTEQP 66
+R Q N++TS++DA+ VYGS P+LA++L+ G + V + D +
Sbjct: 176 AREQINAVTSFLDASLVYGSEPSLASRLQNLSSPLGLMAVNQEAWDHGLAYLPFNNRKPS 235
Query: 67 DDGCIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQE 126
I + CFLAGD R +EQ+ L HTL +REHNR+A EL +NP W E+LYQE
Sbjct: 236 PCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPQWDGEKLYQE 295
Query: 127 TRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAF 186
R IL A VQ IT+ ++LP +LG + MQK+ + GY++ DP I T AF
Sbjct: 296 ARKILGAFVQIITFRDYLPIVLGSE-MQKW--IPPYQGYNNSVDPRISNVF-----TFAF 347
Query: 187 RFGHSLLPKSMER-------WSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQA 239
RFGH +P ++ R W A +F + + K G +D + G+L +
Sbjct: 348 RFGHMEVPSTVSRLDENYQPWGPE----AELPLHTLFFNTWRIIKDGGIDPLVRGLLAKK 403
Query: 240 ALPM--DDAITTQVTNHLFQEPTHE-YGKDLASINLQRAREHGVPSYSEYREFCNLPPVN 296
+ M D +T+++ N LFQ PTH+ +G DLA+INLQR R+HG+P Y+ +R FC L
Sbjct: 404 SKLMNQDKMVTSELRNKLFQ-PTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPK 462
Query: 297 TWTSLLKSLDNSTV-HRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDL 355
T L L N + + DLY P ++D+W G +E + +GP +C++ R F+ +
Sbjct: 463 TLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQI 522
Query: 356 KRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPNDY 410
+ GDRFW+EN P F+ Q ++K+ SR++CDN IT P N+Y
Sbjct: 523 RDGDRFWWEN---PGVFTEKQRDSLQKMSFSRLICDNTH--ITKVPLHAFQANNY 572
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Salicylhydroxamic Acid At 2.48 A
Resolution
Length = 595
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 151/415 (36%), Positives = 223/415 (53%), Gaps = 31/415 (7%)
Query: 9 SRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDXXXXXXXXXXTEQP 66
+R Q N++TS++DA+ VYGS P LA++L+ G + V + D +
Sbjct: 176 AREQINAVTSFLDASLVYGSEPXLASRLQNLSSPLGLMAVNQEAWDHGLAYLPFNNRKPS 235
Query: 67 DDGCIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQE 126
I + CFLAGD R +EQ+ L HTL +REHNR+A EL +NP W E+LYQE
Sbjct: 236 PCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPQWDGEKLYQE 295
Query: 127 TRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAF 186
R IL A VQ IT+ ++LP +LG + MQK+ + GY++ DP I T AF
Sbjct: 296 ARKILGAFVQIITFRDYLPIVLGSE-MQKW--IPPYQGYNNSVDPRISNVF-----TFAF 347
Query: 187 RFGHSLLPKSMER-------WSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQA 239
RFGH +P ++ R W A +F + + K G +D + G+L +
Sbjct: 348 RFGHMEVPSTVSRLDENYQPWGPE----AELPLHTLFFNTWRIIKDGGIDPLVRGLLAKK 403
Query: 240 ALPM--DDAITTQVTNHLFQEPTHE-YGKDLASINLQRAREHGVPSYSEYREFCNLPPVN 296
+ M D +T+++ N LFQ PTH+ +G DLA+INLQR R+HG+P Y+ +R FC L
Sbjct: 404 SKLMNQDKMVTSELRNKLFQ-PTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPK 462
Query: 297 TWTSLLKSLDNSTV-HRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDL 355
T L L N + + DLY P ++D+W G +E + +GP +C++ R F+ +
Sbjct: 463 TLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQI 522
Query: 356 KRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPNDY 410
+ GDRFW+EN P F+ Q ++K+ SR++CDN IT P N+Y
Sbjct: 523 RDGDRFWWEN---PGVFTEKQRDSLQKMSFSRLICDNTH--ITKVPLHAFQANNY 572
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/387 (22%), Positives = 151/387 (39%), Gaps = 41/387 (10%)
Query: 13 TNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDXXXXXXXXXXTEQPDDGCIR 72
T L +D N +YG + KLR ++ G LK ++ + +
Sbjct: 196 TRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLK----YQVIGGEVYPPTVKDTQVEMIYP 251
Query: 73 PH-RDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHIL 131
PH + F G L + T+++REHNR+ L +P W DEQL+Q +R IL
Sbjct: 252 PHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLIL 311
Query: 132 AAIVQHITYNEFLPRLLGKQTMQKYGLEL---KHYGYSDDYDPYIDATIPSAFGTAAFRF 188
I +++ L G K+ EL + + Y + I S F T
Sbjct: 312 IGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQN--------RIASEFNT--LYH 361
Query: 189 GHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDAIT 248
H LLP + I + +S F+Q + N L+ L + ++ T
Sbjct: 362 WHPLLPDTFN--------IEDQEYS--FKQ-FLYNNSILLEHGLTQFV--------ESFT 402
Query: 249 TQVTNHLFQEPTHEYG-KDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDN 307
Q+ + + +A ++ ++RE S +EYR+ +L P ++ L + +
Sbjct: 403 RQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEEL--TGEK 460
Query: 308 STVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENSG 367
+ LYS ++L+ A + E P D++ G T + A + G+
Sbjct: 461 EMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKVLMGNPICSPQYW 520
Query: 368 SPSSF-SLAQLQEIRKVKLSRILCDNA 393
PS+F + I + ++C+N
Sbjct: 521 KPSTFGGEVGFKIINTASIQSLICNNV 547
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/387 (21%), Positives = 155/387 (40%), Gaps = 41/387 (10%)
Query: 13 TNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDXXXXXXXXXXTEQPDDGCIR 72
T L +D N +YG + KLR ++ G LK ++ + +
Sbjct: 194 TRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLK----YQVIGGEVYPPTVKDTQVEMIYP 249
Query: 73 PH-RDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHIL 131
PH + F G L + T+++REHNR+ L +P W DEQL+Q +R IL
Sbjct: 250 PHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLIL 309
Query: 132 AAIVQHITYNEFLPRLLGKQTMQKYGLEL---KHYGYSDDYDPYIDATIPSAFGTAAFRF 188
I +++ L G K+ EL + + Y + I S F T
Sbjct: 310 IGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQN--------RIASEFNT--LYH 359
Query: 189 GHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDAIT 248
H LLP + +++ ++ + ++F ++ L L Q++ Q A +
Sbjct: 360 WHPLLPDT---FNIEDQEYSFKQF--LYNNSILLEH--GLTQFVESFTRQIAGRVAGGRN 412
Query: 249 TQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDNS 308
+ + +A ++ ++RE S +EYR+ +L P ++ L + +
Sbjct: 413 VPIAV-----------QAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEEL--TGEKE 459
Query: 309 TVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIAR-TFRDLKRGDRFWYENSG 367
+ LYS ++L+ A + E P D++ G T + A +F+ L G+
Sbjct: 460 MAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSFKGL-MGNPICSPQYW 518
Query: 368 SPSSF-SLAQLQEIRKVKLSRILCDNA 393
PS+F + I + ++C+N
Sbjct: 519 KPSTFGGEVGFKIINTASIQSLICNNV 545
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 86/387 (22%), Positives = 150/387 (38%), Gaps = 41/387 (10%)
Query: 13 TNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDXXXXXXXXXXTEQPDDGCIR 72
T L +D N +YG + KLR ++ G LK ++ + +
Sbjct: 195 TRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLK----YQVIGGEVYPPTVKDTQVEMIYP 250
Query: 73 PH-RDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHIL 131
PH + F G L + T+++REHNR+ L +P W DEQL+Q +R IL
Sbjct: 251 PHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLIL 310
Query: 132 AAIVQHITYNEFLPRLLGKQTMQKYGLEL---KHYGYSDDYDPYIDATIPSAFGTAAFRF 188
I +++ L G K+ EL + + Y + I S F T
Sbjct: 311 IGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQN--------RIASEFNT--LYH 360
Query: 189 GHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDAIT 248
H LLP + I + +S F+Q + N L+ L + ++ T
Sbjct: 361 WHPLLPDTFN--------IEDQEYS--FKQ-FLYNNSILLEHGLTQFV--------ESFT 401
Query: 249 TQVTNHLFQEPTHEYG-KDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDN 307
Q+ + + +A ++ ++RE S +EYR+ +L P ++ L + +
Sbjct: 402 RQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEEL--TGEK 459
Query: 308 STVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENSG 367
+ LYS ++L+ A + E P D++ G T + A G+
Sbjct: 460 EMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYW 519
Query: 368 SPSSF-SLAQLQEIRKVKLSRILCDNA 393
PS+F + I + ++C+N
Sbjct: 520 KPSTFGGEVGFKIINTASIQSLICNNV 546
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 83/386 (21%), Positives = 151/386 (39%), Gaps = 39/386 (10%)
Query: 13 TNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDXXXXXXXXXXTEQPDDGCIR 72
T L +D N +YG + KLR ++ G LK ++ + +
Sbjct: 190 TRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLK----YQVIGGEVYPPTVKDTQVEMIYP 245
Query: 73 PH-RDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHIL 131
PH + F G L + T+++REHNR+ L +P W DEQL+Q +R IL
Sbjct: 246 PHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLIL 305
Query: 132 AAIVQHITYNEFLPRLLGKQTMQKYGLEL---KHYGYSDDYDPYIDATIPSAFGTAAFRF 188
I +++ L G K+ EL + + Y + I S F T
Sbjct: 306 IGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQN--------RIASEFNT--LYH 355
Query: 189 GHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDAIT 248
H LLP + +++ ++ + ++F ++ L L Q++ Q A +
Sbjct: 356 WHPLLPDT---FNIEDQEYSFKQF--LYNNSILLEH--GLTQFVESFTRQIAGRVAGGRN 408
Query: 249 TQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDNS 308
+ + +A ++ ++RE S +EYR+ +L P ++ L + +
Sbjct: 409 VPIAV-----------QAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEEL--TGEKE 455
Query: 309 TVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENSGS 368
+ LYS ++L+ A + E P D++ G T + A G+
Sbjct: 456 MAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWK 515
Query: 369 PSSF-SLAQLQEIRKVKLSRILCDNA 393
PS+F + I + ++C+N
Sbjct: 516 PSTFGGEVGFKIINTASIQSLICNNV 541
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 86/387 (22%), Positives = 150/387 (38%), Gaps = 41/387 (10%)
Query: 13 TNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDXXXXXXXXXXTEQPDDGCIR 72
T L +D N +YG + KLR ++ G LK ++ + +
Sbjct: 190 TRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLK----YQVIGGEVYPPTVKDTQVEMIYP 245
Query: 73 PH-RDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHIL 131
PH + F G L + T+++REHNR+ L +P W DEQL+Q +R IL
Sbjct: 246 PHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLIL 305
Query: 132 AAIVQHITYNEFLPRLLGKQTMQKYGLEL---KHYGYSDDYDPYIDATIPSAFGTAAFRF 188
I +++ L G K+ EL + + Y + I S F T
Sbjct: 306 IGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQN--------RIASEFNT--LYH 355
Query: 189 GHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDAIT 248
H LLP + I + +S F+Q + N L+ L + ++ T
Sbjct: 356 WHPLLPDTFN--------IEDQEYS--FKQ-FLYNNSILLEHGLTQFV--------ESFT 396
Query: 249 TQVTNHLFQEPTHEYG-KDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDN 307
Q+ + + +A ++ ++RE S +EYR+ +L P ++ L + +
Sbjct: 397 RQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEEL--TGEK 454
Query: 308 STVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENSG 367
+ LYS ++L+ A + E P D++ G T + A G+
Sbjct: 455 EMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYW 514
Query: 368 SPSSF-SLAQLQEIRKVKLSRILCDNA 393
PS+F + I + ++C+N
Sbjct: 515 KPSTFGGEVGFKIINTASIQSLICNNV 541
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 83/386 (21%), Positives = 151/386 (39%), Gaps = 39/386 (10%)
Query: 13 TNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDXXXXXXXXXXTEQPDDGCIR 72
T L +D N +YG + KLR ++ G LK ++ + +
Sbjct: 194 TRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLK----YQVIGGEVYPPTVKDTQVEMIYP 249
Query: 73 PH-RDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHIL 131
PH + F G L + T+++REHNR+ L +P W DEQL+Q +R IL
Sbjct: 250 PHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLIL 309
Query: 132 AAIVQHITYNEFLPRLLGKQTMQKYGLEL---KHYGYSDDYDPYIDATIPSAFGTAAFRF 188
I +++ L G K+ EL + + Y + I S F T
Sbjct: 310 IGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQN--------RIASEFNT--LYH 359
Query: 189 GHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDAIT 248
H LLP + +++ ++ + ++F ++ L L Q++ Q A +
Sbjct: 360 WHPLLPDT---FNIEDQEYSFKQF--LYNNSILLEH--GLTQFVESFTRQIAGRVAGGRN 412
Query: 249 TQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDNS 308
+ + +A ++ ++RE S +EYR+ +L P ++ L + +
Sbjct: 413 VPIAV-----------QAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEEL--TGEKE 459
Query: 309 TVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENSGS 368
+ LYS ++L+ A + E P D++ G T + A G+
Sbjct: 460 MAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWK 519
Query: 369 PSSF-SLAQLQEIRKVKLSRILCDNA 393
PS+F + I + ++C+N
Sbjct: 520 PSTFGGEVGFKIINTASIQSLICNNV 545
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 83/386 (21%), Positives = 151/386 (39%), Gaps = 39/386 (10%)
Query: 13 TNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDXXXXXXXXXXTEQPDDGCIR 72
T L +D N +YG + KLR ++ G LK ++ + +
Sbjct: 190 TRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLK----YQVIGGEVYPPTVKDTQVEMIYP 245
Query: 73 PH-RDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHIL 131
PH + F G L + T+++REHNR+ L +P W DEQL+Q +R IL
Sbjct: 246 PHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLIL 305
Query: 132 AAIVQHITYNEFLPRLLGKQTMQKYGLEL---KHYGYSDDYDPYIDATIPSAFGTAAFRF 188
I +++ L G K+ EL + + Y + I S F T
Sbjct: 306 IGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQN--------RIASEFNT--LYH 355
Query: 189 GHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDAIT 248
H LLP + +++ ++ + ++F ++ L L Q++ Q A +
Sbjct: 356 WHPLLPDT---FNIEDQEYSFKQF--LYNNSILLEH--GLTQFVESFTRQIAGRVAGGRN 408
Query: 249 TQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDNS 308
+ + +A ++ ++RE S +EYR+ +L P ++ L + +
Sbjct: 409 VPIAV-----------QAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEEL--TGEKE 455
Query: 309 TVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENSGS 368
+ LYS ++L+ A + E P D++ G T + A G+
Sbjct: 456 MAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWK 515
Query: 369 PSSF-SLAQLQEIRKVKLSRILCDNA 393
PS+F + I + ++C+N
Sbjct: 516 PSTFGGEVGFKIINTASIQSLICNNV 541
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 83/386 (21%), Positives = 151/386 (39%), Gaps = 39/386 (10%)
Query: 13 TNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDXXXXXXXXXXTEQPDDGCIR 72
T L +D N +YG + KLR ++ G LK ++ + +
Sbjct: 195 TRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLK----YQVIGGEVYPPTVKDTQVEMIYP 250
Query: 73 PH-RDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHIL 131
PH + F G L + T+++REHNR+ L +P W DEQL+Q +R IL
Sbjct: 251 PHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLIL 310
Query: 132 AAIVQHITYNEFLPRLLGKQTMQKYGLEL---KHYGYSDDYDPYIDATIPSAFGTAAFRF 188
I +++ L G K+ EL + + Y + I S F T
Sbjct: 311 IGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQN--------RIASEFNT--LYH 360
Query: 189 GHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDAIT 248
H LLP + +++ ++ + ++F ++ L L Q++ Q A +
Sbjct: 361 WHPLLPDT---FNIEDQEYSFKQF--LYNNSILLEH--GLTQFVESFTRQIAGRVAGGRN 413
Query: 249 TQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDNS 308
+ + +A ++ ++RE S +EYR+ +L P ++ L + +
Sbjct: 414 VPIAV-----------QAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEEL--TGEKE 460
Query: 309 TVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENSGS 368
+ LYS ++L+ A + E P D++ G T + A G+
Sbjct: 461 MAAELKALYSDIDVMELYPALLVEKPHPDAIFGETMVELGAPFSLKGLMGNPICSPQYWK 520
Query: 369 PSSF-SLAQLQEIRKVKLSRILCDNA 393
PS+F + I + ++C+N
Sbjct: 521 PSTFGGEVGFKIINTASIQSLICNNV 546
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 86/387 (22%), Positives = 150/387 (38%), Gaps = 41/387 (10%)
Query: 13 TNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDXXXXXXXXXXTEQPDDGCIR 72
T L +D N +YG + KLR ++ G LK ++ + +
Sbjct: 207 TRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLK----YQVIGGEVYPPTVKDTQVEMIYP 262
Query: 73 PH-RDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHIL 131
PH + F G L + T+++REHNR+ L +P W DEQL+Q +R IL
Sbjct: 263 PHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLIL 322
Query: 132 AAIVQHITYNEFLPRLLGKQTMQKYGLEL---KHYGYSDDYDPYIDATIPSAFGTAAFRF 188
I +++ L G K+ EL + + Y + I S F T
Sbjct: 323 IGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQN--------RIASEFNT--LYH 372
Query: 189 GHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDAIT 248
H LLP + I + +S F+Q + N L+ L + ++ T
Sbjct: 373 WHPLLPDTFN--------IEDQEYS--FKQ-FLYNNSILLEHGLTQFV--------ESFT 413
Query: 249 TQVTNHLFQEPTHEYG-KDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDN 307
Q+ + + +A ++ ++RE S +EYR+ +L P ++ L + +
Sbjct: 414 RQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEEL--TGEK 471
Query: 308 STVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENSG 367
+ LYS ++L+ A + E P D++ G T + A G+
Sbjct: 472 EMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYW 531
Query: 368 SPSSF-SLAQLQEIRKVKLSRILCDNA 393
PS+F + I + ++C+N
Sbjct: 532 KPSTFGGEVGFKIINTASIQSLICNNV 558
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 86/387 (22%), Positives = 150/387 (38%), Gaps = 41/387 (10%)
Query: 13 TNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDXXXXXXXXXXTEQPDDGCIR 72
T L +D N +YG + KLR ++ G LK ++ + +
Sbjct: 213 TRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLK----YQVIGGEVYPPTVKDTQVEMIYP 268
Query: 73 PH-RDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHIL 131
PH + F G L + T+++REHNR+ L +P W DEQL+Q +R IL
Sbjct: 269 PHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLIL 328
Query: 132 AAIVQHITYNEFLPRLLGKQTMQKYGLEL---KHYGYSDDYDPYIDATIPSAFGTAAFRF 188
I +++ L G K+ EL + + Y + I S F T
Sbjct: 329 IGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQN--------RIASEFNT--LYH 378
Query: 189 GHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDAIT 248
H LLP + I + +S F+Q + N L+ L + ++ T
Sbjct: 379 WHPLLPDTFN--------IEDQEYS--FKQ-FLYNNSILLEHGLTQFV--------ESFT 419
Query: 249 TQVTNHLFQEPTHEYG-KDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDN 307
Q+ + + +A ++ ++RE S +EYR+ +L P ++ L + +
Sbjct: 420 RQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEEL--TGEK 477
Query: 308 STVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENSG 367
+ LYS ++L+ A + E P D++ G T + A G+
Sbjct: 478 EMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYW 537
Query: 368 SPSSF-SLAQLQEIRKVKLSRILCDNA 393
PS+F + I + ++C+N
Sbjct: 538 KPSTFGGEVGFKIINTASIQSLICNNV 564
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 156/392 (39%), Gaps = 74/392 (18%)
Query: 14 NSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDXXXXXXXXXXTEQPDDGCIRP 73
N T + D++ +YGS+ ++R Y+ G LK+ ++ +
Sbjct: 225 NIRTPWWDSSVIYGSNSKTLDRVRTYKDGKLKI-------------------SEETGLLL 265
Query: 74 HRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAA 133
H + ++GD R N + L LF++EHN + L + DE LY+ R + +A
Sbjct: 266 HDEDGLAISGDIR-NSWAGVSALQALFIKEHNAVCDALKDEDDDLEDEDLYRYARLVTSA 324
Query: 134 IVQHITYNEFLPRLLGKQTMQKYGLELKHYG-----YSDDYDPYIDATIPSAFG------ 182
+V I ++ +LL T+ G+ YG + D + + + G
Sbjct: 325 VVAKIHTIDWTVQLLKTDTLLA-GMRANWYGLLGKKFKDSFGHAGSSILGGVVGMKKPQN 383
Query: 183 -----------TAAFRFGHSLLPKSMERWSV-----TNK---FIASRRFSEMFQQPYD-- 221
T+ +R HSLLP + + TNK I ++ + +
Sbjct: 384 HGVPYSLTEDFTSVYRM-HSLLPDQLHILDIDDVPGTNKSLPLIQEISMRDLIGRKGEET 442
Query: 222 LNKPGWLDQYLVGMLNQAALPMD---------DAITTQVTNHLFQEPTHEYGKDLASINL 272
++ G+ + +V M +QA+ ++ D + P H DLA++ +
Sbjct: 443 MSHIGF-TKLMVSMGHQASGALELMNYPMWLRDIVPHDPNGQ--ARPDH---VDLAALEI 496
Query: 273 QRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDNSTVHRYQDLYSFP-QDLDLWSAGVS 331
R RE VP Y+E+R + P+ W L + D + D+Y ++LDL ++
Sbjct: 497 YRDRERSVPRYNEFRRSMFMIPITKWEDLTE--DEEAIEVLDDVYDGDVEELDLLVGLMA 554
Query: 332 EIPIGDSLIGPT-FSCIIARTFRDLKRGDRFW 362
E I I T F + R L+ DRF+
Sbjct: 555 EKKIKGFAISETAFYIFLIMATRRLE-ADRFF 585
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 81/386 (20%), Positives = 150/386 (38%), Gaps = 39/386 (10%)
Query: 13 TNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDXXXXXXXXXXTEQPDDGCIR 72
T L +D N +YG + KLR ++ G LK ++ + +
Sbjct: 190 TRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLK----YQVIGGEVYPPTVKDTQVEMIYP 245
Query: 73 PH-RDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHIL 131
PH + F G L + T+++REH R+ L +P W DEQL+Q ++ IL
Sbjct: 246 PHIPENLQFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLIL 305
Query: 132 AAIVQHITYNEFLPRLLGKQTMQKYGLEL---KHYGYSDDYDPYIDATIPSAFGTAAFRF 188
I +++ L G K+ EL + + Y + I S F T
Sbjct: 306 IGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQN--------RIASEFNT--LYH 355
Query: 189 GHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDAIT 248
H LLP + +++ ++ + ++F ++ L L Q++ Q A +
Sbjct: 356 WHPLLPDT---FNIEDQEYSFKQF--LYNNSILLEH--GLTQFVESFTRQIAGRVAGGRN 408
Query: 249 TQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDNS 308
+ + +A ++ ++RE S +EYR+ +L P ++ L + +
Sbjct: 409 VPIAV-----------QAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEEL--TGEKE 455
Query: 309 TVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENSGS 368
+ LYS ++L+ A + E P D++ G T + A G+
Sbjct: 456 MAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWK 515
Query: 369 PSSF-SLAQLQEIRKVKLSRILCDNA 393
PS+F + I + ++C+N
Sbjct: 516 PSTFGGEVGFKIINTASIQSLICNNV 541
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 81/386 (20%), Positives = 150/386 (38%), Gaps = 39/386 (10%)
Query: 13 TNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDXXXXXXXXXXTEQPDDGCIR 72
T L +D N +YG + KLR ++ G LK ++ + +
Sbjct: 190 TRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLK----YQVIGGEVYPPTVKDTQVEMIYP 245
Query: 73 PH-RDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHIL 131
PH + F G L + T+++REH R+ L +P W DEQL+Q ++ IL
Sbjct: 246 PHIPENLQFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLIL 305
Query: 132 AAIVQHITYNEFLPRLLGKQTMQKYGLEL---KHYGYSDDYDPYIDATIPSAFGTAAFRF 188
I +++ L G K+ EL + + Y + I S F T
Sbjct: 306 IGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQN--------RIASEFNT--LYH 355
Query: 189 GHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDAIT 248
H LLP + +++ ++ + ++F ++ L L Q++ Q A +
Sbjct: 356 WHPLLPDT---FNIEDQEYSFKQF--LYNNSILLEH--GLTQFVESFTRQIAGRVAGGRN 408
Query: 249 TQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDNS 308
+ + +A ++ ++RE S +EYR+ +L P ++ L + +
Sbjct: 409 VPIAV-----------QAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEEL--TGEKE 455
Query: 309 TVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENSGS 368
+ LYS ++L+ A + E P D++ G T + A G+
Sbjct: 456 MAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWK 515
Query: 369 PSSF-SLAQLQEIRKVKLSRILCDNA 393
PS+F + I + ++C+N
Sbjct: 516 PSTFGGEVGFKIINTASIQSLICNNV 541
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 92 ALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQ 151
L + T+++REHNR+ L +P W DEQL+Q R IL I E++ +L G
Sbjct: 277 GLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYF 336
Query: 152 TMQKYGLEL 160
K+ EL
Sbjct: 337 LQLKFDPEL 345
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 92 ALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQ 151
L + T+++REHNR+ L +P W DEQL+Q R IL I E++ +L G
Sbjct: 297 GLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYF 356
Query: 152 TMQKYGLEL 160
K+ EL
Sbjct: 357 LQLKFDPEL 365
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 92 ALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQ 151
L + T+++REHNR+ L +P W DEQL+Q R IL I E++ +L G
Sbjct: 273 GLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYF 332
Query: 152 TMQKYGLEL 160
K+ EL
Sbjct: 333 LQLKFDPEL 341
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 92 ALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQ 151
L + T+++REHNR+ L +P W DEQL+Q R IL I E++ +L G
Sbjct: 266 GLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYF 325
Query: 152 TMQKYGLEL 160
K+ EL
Sbjct: 326 LQLKFDPEL 334
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 92 ALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQ 151
L + T+++REHNR+ L +P W DEQL+Q R IL I E++ +L G
Sbjct: 273 GLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYF 332
Query: 152 TMQKYGLEL 160
K+ EL
Sbjct: 333 LQLKFDPEL 341
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 92 ALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQ 151
L + T+++REHNR+ L +P W DEQL+Q R IL I E++ +L G
Sbjct: 266 GLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYF 325
Query: 152 TMQKYGLEL 160
K+ EL
Sbjct: 326 LQLKFDPEL 334
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 92 ALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQ 151
L + T+++REHNR+ L +P W DEQL+Q R IL I E++ +L G
Sbjct: 266 GLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYF 325
Query: 152 TMQKYGLEL 160
K+ EL
Sbjct: 326 LQLKFDPEL 334
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 92 ALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQ 151
L + T+++REHNR+ L +P W DEQL+Q R IL I E++ +L G
Sbjct: 265 GLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYF 324
Query: 152 TMQKYGLEL 160
K+ EL
Sbjct: 325 LQLKFDPEL 333
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 92 ALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQ 151
L + T+++REHNR+ L +P W DEQL+Q R IL I E++ +L G
Sbjct: 265 GLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYF 324
Query: 152 TMQKYGLEL 160
K+ EL
Sbjct: 325 LQLKFDPEL 333
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 92 ALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQ 151
L + T+++REHNR+ L +P W DEQL+Q R IL I E+ +L G
Sbjct: 297 GLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYAQQLSGYF 356
Query: 152 TMQKYGLEL 160
K+ EL
Sbjct: 357 LQLKFDPEL 365
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 92 ALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQ 151
L + T+++REH R+ L +P W DEQL+Q + IL I E++ +L G
Sbjct: 265 GLMLYATIWLREHQRVCDLLKAEHPTWGDEQLFQTAKLILIGETIKIVIEEYVQQLSGYF 324
Query: 152 TMQKYGLEL 160
K+ EL
Sbjct: 325 LQLKFDPEL 333
>pdb|2WOY|A Chain A, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Gordonii Surface Protein Sspb
Length = 356
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 140 YNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYID------ATIPSAFGT----AAFRFG 189
Y F RL+G Q + EL+ Y + DDYD D T S T + + G
Sbjct: 223 YQTFNYRLIGGLIPQNHSEELEDYSFVDDYDQAGDQYTGNYKTFSSLNLTXKDGSVIKAG 282
Query: 190 HSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYL 232
L ++ TN I + RF E F Q L+ P + YL
Sbjct: 283 TDLTSQTTAETDATNG-IVTVRFKEDFLQKISLDSPFQAETYL 324
>pdb|2WQS|A Chain A, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Gordonii Surface Protein Sspb
Length = 356
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 140 YNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYID------ATIPSAFGT----AAFRFG 189
Y F RL+G Q + EL+ Y + DDYD D T S T + + G
Sbjct: 223 YQTFNYRLIGGLIPQNHSEELEDYSFVDDYDQAGDQYTGNYKTFSSLNLTMKDGSVIKAG 282
Query: 190 HSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYL 232
L ++ TN I + RF E F Q L+ P + YL
Sbjct: 283 TDLTSQTTAETDATNG-IVTVRFKEDFLQKISLDSPFQAETYL 324
>pdb|2WZA|A Chain A, Two Intramolecular Isopeptide Bonds Are Identified In The
Crystal Structure Of The Streptococcus Gordonii Sspb C-
Terminal Domain
Length = 374
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 140 YNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYID------ATIPSAFGT----AAFRFG 189
Y F RL+G Q + EL+ Y + DDYD D T S T + + G
Sbjct: 241 YQTFNYRLIGGLIPQNHSEELEDYSFVDDYDQAGDQYTGNYKTFSSLNLTMKDGSVIKAG 300
Query: 190 HSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYL 232
L ++ TN I + RF E F Q L+ P + YL
Sbjct: 301 TDLTSQTTAETDATNG-IVTVRFKEDFLQKISLDSPFQAETYL 342
>pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A7K|B Chain B, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A7K|C Chain C, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A7K|D Chain D, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A7K|E Chain E, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A7K|F Chain F, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A7K|G Chain G, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A7K|H Chain H, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A7K|I Chain I, Carboxymethylproline Synthase (carb) From Pectobacterium
Carotovora, Apo Enzyme
pdb|2A81|A Chain A, Carboxymethylproline Synthase (Carb) From Pectobacterium
Carotovora, Complexed With Acetyl Coa And Bicine
pdb|2A81|B Chain B, Carboxymethylproline Synthase (Carb) From Pectobacterium
Carotovora, Complexed With Acetyl Coa And Bicine
pdb|2A81|C Chain C, Carboxymethylproline Synthase (Carb) From Pectobacterium
Carotovora, Complexed With Acetyl Coa And Bicine
Length = 250
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 211 RFSEMFQQPYDLNKP--GWLDQYLVGMLNQAALPMDDAITTQVTNHLFQEPTHEYGKDLA 268
R +++Q ++NKP +D Y +GM Q AL D + N + E H G +
Sbjct: 82 RVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVG 141
Query: 269 SINLQRAREHGVPSYSE 285
+ L HG + E
Sbjct: 142 AAIL--GFTHGFSTMQE 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,731,826
Number of Sequences: 62578
Number of extensions: 536541
Number of successful extensions: 1120
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 57
length of query: 416
length of database: 14,973,337
effective HSP length: 101
effective length of query: 315
effective length of database: 8,652,959
effective search space: 2725682085
effective search space used: 2725682085
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)