Query psy722
Match_columns 416
No_of_seqs 145 out of 1045
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 21:10:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03098 An_peroxidase: Animal 100.0 3E-108 6E-113 864.3 22.3 388 5-404 135-530 (530)
2 KOG2408|consensus 100.0 6E-106 1E-110 857.5 27.9 395 6-410 295-698 (719)
3 PLN02283 alpha-dioxygenase 100.0 2.4E-92 5.2E-97 744.3 27.9 362 9-396 203-601 (633)
4 PF08880 QLQ: QLQ; InterPro: 57.5 7.3 0.00016 26.1 1.6 34 370-403 1-35 (37)
5 PF10929 DUF2811: Protein of u 45.5 25 0.00053 25.9 2.8 15 113-127 19-33 (57)
6 KOG1712|consensus 34.9 9 0.00019 34.4 -1.0 57 297-357 27-90 (183)
7 PF11522 Pik1: Yeast phosphati 27.1 28 0.00061 25.1 0.7 19 123-142 3-21 (51)
8 PF11230 DUF3029: Protein of u 25.6 75 0.0016 33.2 3.6 45 280-332 53-104 (487)
9 PF03206 NifW: Nitrogen fixati 25.4 1.7E+02 0.0036 24.4 5.0 44 93-139 32-75 (105)
10 PRK02866 cyanate hydratase; Va 25.4 1.2E+02 0.0026 26.8 4.4 63 272-338 10-75 (147)
11 PF14043 WVELL: WVELL protein 21.1 1.8E+02 0.0038 22.7 4.0 27 103-133 3-29 (75)
12 COG4286 Uncharacterized conser 20.8 1.5E+02 0.0032 29.1 4.4 38 107-146 145-190 (306)
No 1
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=100.00 E-value=2.5e-108 Score=864.32 Aligned_cols=388 Identities=47% Similarity=0.829 Sum_probs=322.7
Q ss_pred cCCCcccccccCCCccccccCCCCCHHHhhhhhc-ccCCcccccc-c-ccCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q psy722 5 NNKSSRVQTNSLTSYIDANFVYGSSPTLAAKLRE-YRGGCLKVLP-Q-FKDLGLKPLLPLKTEQPDDGCIRPHRDLYCFL 81 (416)
Q Consensus 5 ~~~~preq~N~~T~~lDlS~vYGs~~~~~~~LR~-~~~G~L~~~~-~-~~~~g~~~~lP~~~~~~~~~c~~~~~~~~~~~ 81 (416)
|+. ||||+|++|||||||+|||++++++.+||+ +++|+|++.. . ...+|. +++|........+| .||+
T Consensus 135 ~~~-~req~N~~T~~lD~S~vYGs~~~~~~~LR~~~~~G~L~~~~~~~~~~~~~-~~lp~~~~~~~~~~-------~~f~ 205 (530)
T PF03098_consen 135 CSL-PREQINQATSYLDLSQVYGSSEEQARRLRSSFKGGKLKSDNGEFPPPNGG-GLLPSDDPPTDSGC-------RCFL 205 (530)
T ss_dssp SSS-STTBEE-STSSSS-HHHH-SSHHHHHHTBESSTTTEB--ETSSEEBBTTB-ES--B-TSCSSGHH-------GSB-
T ss_pred Ccc-chhhhccccceeecccccCCCHHHHHHhhcchhhhhhhcccccccccCCC-CCCCCCcccccccc-------cccc
Confidence 344 999999999999999999999999999999 9999999621 0 112342 66776531111123 7999
Q ss_pred cCCCccccchHHHHHHHHHHHHhHHHHHHHhhhCCCCCchHhHHHHHHHHHHHHHHHHHHhhhhHhhccchhhhcccccc
Q psy722 82 AGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELK 161 (416)
Q Consensus 82 ~GD~R~ne~~~l~~lhtlf~ReHNria~~L~~~np~w~De~lFqeAR~ivia~~Q~Iv~~E~Lp~llG~~~~~~~~l~~~ 161 (416)
+||.|+||+|+|++|||+|+|||||||++|+++||+|+||+||||||+||+|+||||||+||||+|||.+.++++.+.+.
T Consensus 206 ~GD~R~ne~~~l~~lhtlflReHNria~~L~~~np~w~de~lFqeAR~iv~a~~Q~Ivy~E~LP~llG~~~~~~~~~~~~ 285 (530)
T PF03098_consen 206 AGDPRVNENPGLTALHTLFLREHNRIADELKKINPHWDDERLFQEARRIVIAQYQHIVYNEYLPALLGPEAMNKFLLPPL 285 (530)
T ss_dssp TSSTTTTSBHHHHHHHHHHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHHHHTTHHHHHGHGGHHHHS-G--
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHhhhhHhhhhhhhcchhhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888776655
Q ss_pred cCCCCCCCCCCCCCChhHHHHhhhhhhhcccCCccccccccccc-cccccchhhhhcCCc-CCCCCCchhHHHhHHhhcc
Q psy722 162 HYGYSDDYDPYIDATIPSAFGTAAFRFGHSLLPKSMERWSVTNK-FIASRRFSEMFQQPY-DLNKPGWLDQYLVGMLNQA 239 (416)
Q Consensus 162 ~~~~~~~y~~~v~p~i~~EFa~aayRfgHS~i~~~~~~~~~~~~-~~~~~~l~d~~~~p~-~l~~~~~~d~~~~g~~~q~ 239 (416)
..+++.+|++.++|+|++|||+|||||||||||+.+.+++++++ ....++|.+.|++|. .+..++++|.+++|+..|+
T Consensus 286 ~~g~~~~y~~~~~~~i~~EFa~aA~RfgHs~i~~~~~~~~~~~~~~~~~~~L~d~f~~~~~~~~~~~gid~ll~G~~~~~ 365 (530)
T PF03098_consen 286 NNGYYKGYDPSVDPSISNEFAAAAYRFGHSMIPDTYDRWDENFEIPEPSLPLSDAFFNPSNRLLEEGGIDPLLRGLASQP 365 (530)
T ss_dssp --GCGTTS-TTS--S-BTTH-HHHGGGGGGGS-SEEEEBTTTSBETTSEEEGGGGBT-HH-HHHTTTCSHHHHHHHHHSE
T ss_pred ccccccCCCCCCCCchhHHHHHHHHHhhheeehhhhhhccccCCcccccccccccccCcchhhhhccchHHHHhHHhhCc
Confidence 56678999999999999999999999999999999999988873 356789999999998 5667789999999999999
Q ss_pred cCCCC--CCCCHHHHhhccCCCCCcccchhHHhhHHHHHHcCCCchHHHHHHcCCCCCCChHHhhcc-CCHHHHHHHHHh
Q psy722 240 ALPMD--DAITTQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKS-LDNSTVHRYQDL 316 (416)
Q Consensus 240 ~~~~D--~~~~~~l~~~lf~~~~~~~g~DL~a~nIqRgRd~Glp~yn~~R~~~gl~~~~sf~dl~~~-~~~~~~~~l~~l 316 (416)
++++| ..++++|++++|+....+..+||+++|||||||||||+||+||++|||+++++|+||.+. .+++++++|+++
T Consensus 366 a~~~d~~~~~~~~l~~~lf~~~~~~~~~DL~a~nIqRGRdhGLp~yn~~R~~cgl~~~~sf~dl~~~~~~~~i~~~L~~~ 445 (530)
T PF03098_consen 366 AQKVDNPRFLVDDLRNHLFGPRNVPGSLDLAALNIQRGRDHGLPSYNDYREFCGLPPATSFEDLTDEISDEEIAAALRAL 445 (530)
T ss_dssp EEHHBTTBHSHHHHHTSEESTTSSSEEEHHHHHHHHHHHHTTB-BHHHHHHHTT----SSHHHHHHHHTSHHHHHHHHHH
T ss_pred cccccHHHHhhhHhhcccccccCCcchhHHHHHHHHHHHHhCCchHHHHHHHhccCCCCCHHHhhhhhhHHHHHHHHHHh
Confidence 99999 999999999999865444446999999999999999999999999999999999999763 356777999999
Q ss_pred hCCCCCccccccccccccCCCCCCChhHHHHHHHHHHHhhhcCcceeecCCCCCCCCHHHHHHHHhcchhHHHhhhCCCc
Q psy722 317 YSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDL 396 (416)
Q Consensus 317 Y~~~ddiDL~vG~l~E~~~~G~~~Gpt~~~ii~~qf~rl~~gDRf~ye~~~~~~~fT~~ql~~i~~~sla~iic~n~~~~ 396 (416)
|++|||||||||+|+|++++|+.+|||++|||++||.++|+|||||||| +++||++|+++|+++||++|||+|++.+
T Consensus 446 Y~~vddvDL~vG~laE~~~~G~~lGpt~~~Ii~~qf~~l~~gDRf~yen---~~~ft~~ql~~i~~~tla~iic~n~~~~ 522 (530)
T PF03098_consen 446 YGHVDDVDLWVGGLAEKPVPGGLLGPTFSCIIAEQFSRLRRGDRFWYEN---PGSFTPEQLEEIRKTTLARIICDNTDDI 522 (530)
T ss_dssp HSSGGGSBHHHHHHHS-BSTTSSSBHHHHHHHHHHHHHHHHTSTTGTTS---CTTCTHHHHHHHTTT-HHHHHHHHSTS-
T ss_pred ccchhcccccceeeeeccccCCCCCHHHHhHHHHHHHHHHhcCcccccC---cCcCCHHHHHHHHHCCHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999999999999995 5899999999999999999999999879
Q ss_pred cccccccc
Q psy722 397 ITIQPWAL 404 (416)
Q Consensus 397 ~~iq~~~F 404 (416)
++||+++|
T Consensus 523 ~~iq~~~F 530 (530)
T PF03098_consen 523 TRIQPNAF 530 (530)
T ss_dssp SEEESSTT
T ss_pred ccCCCCCC
Confidence 99999998
No 2
>KOG2408|consensus
Probab=100.00 E-value=6.3e-106 Score=857.50 Aligned_cols=395 Identities=43% Similarity=0.766 Sum_probs=356.5
Q ss_pred CCCcccccccCCCccccccCCCCCHHHhhhhhcccC--CcccccccccCCCCCCCCCCCCCCCCCCCCCCC--CCccccc
Q psy722 6 NKSSRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDLGLKPLLPLKTEQPDDGCIRPH--RDLYCFL 81 (416)
Q Consensus 6 ~~~preq~N~~T~~lDlS~vYGs~~~~~~~LR~~~~--G~L~~~~~~~~~g~~~~lP~~~~~~~~~c~~~~--~~~~~~~ 81 (416)
++++|+|+|++|||||+|.||||+++++.+||.|++ |+|+++.....+|. .++|...+. +..|.... ....||+
T Consensus 295 ~~~~reQlNq~T~~lD~S~IYGss~~~~~~lR~f~~~~g~l~~~~~~~~~~~-~~lP~~~~~-~~~c~~~~~~~~~~cf~ 372 (719)
T KOG2408|consen 295 NLGPREQLNQLTSFLDASVIYGSSDEDARKLRLFKDGKGLLRVDTGLFENGR-PLLPFSTDP-PNSCRSKPPGAPKPCFT 372 (719)
T ss_pred cCChhhhhccccccccchhccCCCHHHHHHHhcccCcccceeecccccccCc-ccCCCCCCC-CccccccCCCCCCcccc
Confidence 788999999999999999999999999999999999 66665321223452 677776433 45787655 3478999
Q ss_pred cCCCccccchHHHHHHHHHHHHhHHHHHHHhhhCCCCCchHhHHHHHHHHHHHHHHHHHHhhhhHhhccchhhhcccccc
Q psy722 82 AGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELK 161 (416)
Q Consensus 82 ~GD~R~ne~~~l~~lhtlf~ReHNria~~L~~~np~w~De~lFqeAR~ivia~~Q~Iv~~E~Lp~llG~~~~~~~~l~~~ 161 (416)
+||.|+|++|+|+++||+|+|||||||++|++.||+|+||+|||||||||+|++|||||+||||.++|... ...
T Consensus 373 aGD~R~~~~pgL~~~hti~lREHNRiA~~Lk~~np~W~dE~lfQeaRkI~~A~~q~Ity~e~LP~ilG~~~------~~~ 446 (719)
T KOG2408|consen 373 AGDERANEQPGLAALHTLFLREHNRIATELKALNPHWSDERLFQEARKIVGAQVQHITYNEYLPKLLGAPL------KVS 446 (719)
T ss_pred cCccccccCcchHHHHHHHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHhhhhHHhhhhhhcCccc------ccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999221 111
Q ss_pred cCCCCCCCCCCCCCChhHHHHhhhhhhhcccCCcccccccccccccc---ccchhhhhcCCcCCCCCCchhHHHhHHhhc
Q psy722 162 HYGYSDDYDPYIDATIPSAFGTAAFRFGHSLLPKSMERWSVTNKFIA---SRRFSEMFQQPYDLNKPGWLDQYLVGMLNQ 238 (416)
Q Consensus 162 ~~~~~~~y~~~v~p~i~~EFa~aayRfgHS~i~~~~~~~~~~~~~~~---~~~l~d~~~~p~~l~~~~~~d~~~~g~~~q 238 (416)
.|++.+|+++++|+|++|||+|||||||||||+.+.+.++++...+ .+++.+.|++|+.+...+++|++++|+.++
T Consensus 447 -~g~~~gY~~~~dp~IsneFataAfRfgHsli~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~ggid~llrGl~~~ 525 (719)
T KOG2408|consen 447 -LGGYRGYDPNVDPTISNEFATAAFRFGHSLIPPFFQRLDENFQPIGEVVNLPLHDAFFNPWLILNEGGIDPLLRGLTTQ 525 (719)
T ss_pred -CccccCcCCCCChhhhhhhhHHHHhhhcccCchhhhhhcccCcccccccCchhhhhhcchhhhhhccChhHHHHHHHhc
Confidence 3677999999999999999999999999999999999999987533 688899999999998899999999999999
Q ss_pred ccCCC-CCCCCHHHHhhccCCCCCcccchhHHhhHHHHHHcCCCchHHHHHHcCCCCCCChHHhhccCCHHHHHHHHHhh
Q psy722 239 AALPM-DDAITTQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDNSTVHRYQDLY 317 (416)
Q Consensus 239 ~~~~~-D~~~~~~l~~~lf~~~~~~~g~DL~a~nIqRgRd~Glp~yn~~R~~~gl~~~~sf~dl~~~~~~~~~~~l~~lY 317 (416)
++++. |..++.++++++|.......++||+|+|||||||||||+||+||++|||+++++|+||.+.++++++++|+.+|
T Consensus 526 ~~~~~~d~~~~~~i~~~lf~~~~~~~~~DL~ainIQRgRDhGlp~Yn~yR~~cgL~~~~s~edL~~~i~~~~~~kl~~lY 605 (719)
T KOG2408|consen 526 PAKMPDDQLLNGEITERLFVKTDEDGELDLAALNIQRGRDHGLPPYNEYRKFCGLSPATSFEDLSDEIEPEIINKLRTLY 605 (719)
T ss_pred hhhcccchhcCHHHHHHHhhhcCcccccchhhhhhhccccCCCCCHHHHHHHcCCCCCCCHHHhhhhhhHHHHHHHHHhc
Confidence 99999 89999999999998654333399999999999999999999999999999999999999988889999999999
Q ss_pred CCCCCccccccccccccCCCCCCChhHHHHHHHHHHHhhhcCcceeecCCCCCCCCHHHHHHHHhcchhHHHhhhCCCcc
Q psy722 318 SFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLI 397 (416)
Q Consensus 318 ~~~ddiDL~vG~l~E~~~~G~~~Gpt~~~ii~~qf~rl~~gDRf~ye~~~~~~~fT~~ql~~i~~~sla~iic~n~~~~~ 397 (416)
+++||||||||+++|++++|+.+|||++|||++||+|+|+|||||||| .+|+.||++||+||+|+|||+|||+|++.+.
T Consensus 606 ~~~ddiDL~vG~~~E~~~~g~~vGPTl~cii~~Qf~r~r~gDRf~yen-~~~~~Ft~~QL~ei~k~sLariiC~N~~~~~ 684 (719)
T KOG2408|consen 606 GTPDDIDLYVGLLLEKPLPGGLVGPTLACIIAEQFLRLRDGDRFWYEN-FNPGVFTPEQLEEIRKVSLARIICDNGTKIT 684 (719)
T ss_pred CCchhhcccccccccccCCCceecccHHHHHHHHHHHHhccCceeecC-CCCCccCHHHHHHHHHhhchheeecCCcccc
Confidence 999999999999999999999999999999999999999999999999 8899999999999999999999999954477
Q ss_pred cccc-cccccCCCC
Q psy722 398 TIQP-WALEMPNDY 410 (416)
Q Consensus 398 ~iq~-~~F~~~~~~ 410 (416)
.+++ ++|..++..
T Consensus 685 ~~~~~~~f~~~~~~ 698 (719)
T KOG2408|consen 685 KVSRFDVFDFPDAP 698 (719)
T ss_pred cccccCCccccccC
Confidence 7777 999887754
No 3
>PLN02283 alpha-dioxygenase
Probab=100.00 E-value=2.4e-92 Score=744.28 Aligned_cols=362 Identities=24% Similarity=0.351 Sum_probs=308.2
Q ss_pred cccccccCCCccccccCCCCCHHHhhhhhcccCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCccc
Q psy722 9 SRVQTNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDLGLKPLLPLKTEQPDDGCIRPHRDLYCFLAGDNRVN 88 (416)
Q Consensus 9 preq~N~~T~~lDlS~vYGs~~~~~~~LR~~~~G~L~~~~~~~~~g~~~~lP~~~~~~~~~c~~~~~~~~~~~~GD~R~n 88 (416)
+++|+|++|||||+|+||||+++++++||+|++||||++ .+| ++|.. ...|+++||.| |
T Consensus 203 ~~~qiN~~Ts~lD~S~IYGss~~~~~~LRtf~~GkLk~~----~~~---~l~~~-------------~~~~~~~Gd~r-n 261 (633)
T PLN02283 203 KTGSLNIRTPWWDGSVIYGSNEKGLRRVRTFKDGKLKIS----EDG---LLLHD-------------EDGIPISGDVR-N 261 (633)
T ss_pred CccccccccceeecccccCCCHHHHHhhhCCCCCccCcC----CCC---CCCCC-------------ccCCcccCccc-c
Confidence 899999999999999999999999999999999999963 234 45543 12489999999 7
Q ss_pred cchHHHHHHHHHHHHhHHHHHHHhhhCCCCCchHhHHHHHHHHHHHHHHHHHHhhhhHhhccchhh------hcccccc-
Q psy722 89 EQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQTMQ------KYGLELK- 161 (416)
Q Consensus 89 e~~~l~~lhtlf~ReHNria~~L~~~np~w~De~lFqeAR~ivia~~Q~Iv~~E~Lp~llG~~~~~------~~~l~~~- 161 (416)
++|+|++|||||+|||||||++|+++||+|+||+||||||+||+|+||||||+||||+|||.+.+. .++|...
T Consensus 262 ~~pGL~~lhtLF~REHNrIad~L~~~nP~w~DE~LFQeAR~Iv~A~~q~I~~~EylP~iLg~~~~~~~~~~~w~gllg~~ 341 (633)
T PLN02283 262 SWAGVSLLQALFVKEHNAVCDALKEEYPDFDDEELYRHARLVTSAVIAKIHTIDWTVELLKTDTLLAGMRANWYGLLGKK 341 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHheeeeeeeccHHhcCCcccccccccccccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999987652 2333211
Q ss_pred ------------cCC---CCCCCCCCCCCChhHHHHhhhhhhhcccCCccccccccccc--------cccccchhhhhcC
Q psy722 162 ------------HYG---YSDDYDPYIDATIPSAFGTAAFRFGHSLLPKSMERWSVTNK--------FIASRRFSEMFQQ 218 (416)
Q Consensus 162 ------------~~~---~~~~y~~~v~p~i~~EFa~aayRfgHS~i~~~~~~~~~~~~--------~~~~~~l~d~~~~ 218 (416)
..| |...+++.++++|++|| +||||| ||+||+.+.+.+..+. ....+++.++++.
T Consensus 342 ~~~~~g~~~~~~~~g~~gy~~~~~~~v~~~is~EF-~aaYR~-Hslip~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~ 419 (633)
T PLN02283 342 FKDTFGHIGGPILSGLVGLKKPNNHGVPYSLTEEF-TSVYRM-HSLLPDHLILRDITAAPGENKSPPLIEEIPMPELIGL 419 (633)
T ss_pred hhhhcccccccccccccCCCccccCCCCcchhHHH-HHHHhh-hhcCCCceecccccccccccccccccccccHHHHHhh
Confidence 122 33345567889999999 579999 9999999988775442 1235778887753
Q ss_pred Cc-CCCCCCchhHHHhHHhhcccCCCCCCCCHH-HHhhccC---CCCCcccchhHHhhHHHHHHcCCCchHHHHHHcCCC
Q psy722 219 PY-DLNKPGWLDQYLVGMLNQAALPMDDAITTQ-VTNHLFQ---EPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLP 293 (416)
Q Consensus 219 p~-~l~~~~~~d~~~~g~~~q~~~~~D~~~~~~-l~~~lf~---~~~~~~g~DL~a~nIqRgRd~Glp~yn~~R~~~gl~ 293 (416)
.. ......+++.+++|+..|++++++....+. +++.+.. .+.++.|+||+|+|||||||||||+||+||++|||+
T Consensus 420 ~~~~~l~~~Gl~~ll~~l~~q~aga~~l~n~p~~l~~l~~~~~~g~~~~~g~DLaal~IqRgRDhGlp~YNefR~~~gL~ 499 (633)
T PLN02283 420 KGEKKLSKIGFEKLMVSMGHQACGALELWNYPSWMRDLVPQDIDGEDRPDHVDMAALEIYRDRERGVARYNEFRRNLLMI 499 (633)
T ss_pred cccccccccCHHHHHHHHhhcchhccccccCcHHHHhhhhccccCCcccccccHHHHHHHhhhhcCCccHHHHHHHcCCC
Confidence 22 122347899999999999999998766555 3333211 123357899999999999999999999999999999
Q ss_pred CCCChHHhhccCCHHHHHHHHHhhC-CCCCccccccccccccCCCCCCChhHHHHHHHHHHHhhhcCcceeecCCCCCCC
Q psy722 294 PVNTWTSLLKSLDNSTVHRYQDLYS-FPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENSGSPSSF 372 (416)
Q Consensus 294 ~~~sf~dl~~~~~~~~~~~l~~lY~-~~ddiDL~vG~l~E~~~~G~~~Gpt~~~ii~~qf~rl~~gDRf~ye~~~~~~~f 372 (416)
+++||+||++ +++++++|+++|+ +|||||||||+++|++++|+.+|||++||++.||.|+++|||||||+. +|++|
T Consensus 500 ~~~sFedlt~--d~e~~~~L~~lY~~~vddVDL~VG~laE~~v~G~~vG~T~~~i~~~~a~r~~~gDRF~~en~-np~~f 576 (633)
T PLN02283 500 PISKWEDLTD--DEEAIEVLREVYGDDVEKLDLLVGLMAEKKIKGFAISETAFFIFLLMASRRLEADRFFTSNF-NEKTY 576 (633)
T ss_pred CCCCHHHcCC--CHHHHHHHHHHhCCCHHHHHhhhhheecccCCCCCcCHHHHHHHHHHHHHHhcCCCCeEecC-CcCcC
Confidence 9999999997 7999999999998 899999999999999999999999999999999999999999999986 58999
Q ss_pred CHHHHHHHHhc-chhHHHhhhCCCc
Q psy722 373 SLAQLQEIRKV-KLSRILCDNADDL 396 (416)
Q Consensus 373 T~~ql~~i~~~-sla~iic~n~~~~ 396 (416)
|++|++||+++ ||++|||+|.+.+
T Consensus 577 T~~gl~~I~~t~tl~dvl~r~~p~~ 601 (633)
T PLN02283 577 TKKGLEWVNTTESLKDVIDRHYPEM 601 (633)
T ss_pred CHHHHHHHHccCcHHHHHHHhCcch
Confidence 99999999997 9999999998755
No 4
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.48 E-value=7.3 Score=26.07 Aligned_cols=34 Identities=32% Similarity=0.309 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHh-cchhHHHhhhCCCcccccccc
Q psy722 370 SSFSLAQLQEIRK-VKLSRILCDNADDLITIQPWA 403 (416)
Q Consensus 370 ~~fT~~ql~~i~~-~sla~iic~n~~~~~~iq~~~ 403 (416)
+.||++|+.++|. +..-+.|.+|......+|..+
T Consensus 1 s~FT~~Ql~~L~~Qi~ayK~l~~~~pVP~~l~~~I 35 (37)
T PF08880_consen 1 SPFTPAQLQELRAQILAYKYLARNQPVPPQLQQAI 35 (37)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhh
Confidence 4799999999985 466788888877444554433
No 5
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=45.50 E-value=25 Score=25.93 Aligned_cols=15 Identities=27% Similarity=0.776 Sum_probs=13.6
Q ss_pred hhCCCCCchHhHHHH
Q psy722 113 VVNPHWSDEQLYQET 127 (416)
Q Consensus 113 ~~np~w~De~lFqeA 127 (416)
..||.||-.+|||.|
T Consensus 19 e~hP~WDQ~Rl~~aA 33 (57)
T PF10929_consen 19 ETHPNWDQYRLFQAA 33 (57)
T ss_pred HcCCCchHHHHHHHH
Confidence 469999999999998
No 6
>KOG1712|consensus
Probab=34.94 E-value=9 Score=34.35 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=40.0
Q ss_pred ChHHhhcc-CCHHHH----HHHHHhhCC-C-CCccccccccccccCCCCCCChhHHHHHHHHHHHhhh
Q psy722 297 TWTSLLKS-LDNSTV----HRYQDLYSF-P-QDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKR 357 (416)
Q Consensus 297 sf~dl~~~-~~~~~~----~~l~~lY~~-~-ddiDL~vG~l~E~~~~G~~~Gpt~~~ii~~qf~rl~~ 357 (416)
-|+|++.. .||... ..+.+.|.+ . .+||..+|.=+ .|.++||+.+--++--|.-+|.
T Consensus 27 ~F~Di~pll~dP~af~~lidlf~~h~~~~~~~~Id~iaGlEa----RGFLFGP~iAlalG~~fVPiRK 90 (183)
T KOG1712|consen 27 MFQDITPLLLDPKAFKKLIDLFVDHYRETFEMKIDVIAGLEA----RGFLFGPSIALALGAGFVPIRK 90 (183)
T ss_pred ehhhhhhhhcCHHHHHHHHHHHHHHHHHHhcCcceEEEeeee----cceecCcHHHHHhCCCeeeccc
Confidence 47788754 466544 444555553 3 45999998744 6899999999888888887763
No 7
>PF11522 Pik1: Yeast phosphatidylinositol-4-OH kinase Pik1; InterPro: IPR021601 Pik1 is a regulator of membrane traffic and participates in the mating-pheromone signal-transduction cascade. The protein is localised to the nucleus and cytoplasm in the Golgi. Pik1 is thought to have an actin-independent role in membrane transport []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2JU0_B.
Probab=27.07 E-value=28 Score=25.06 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q psy722 123 LYQETRHILAAIVQHITYNE 142 (416)
Q Consensus 123 lFqeAR~ivia~~Q~Iv~~E 142 (416)
-||.|||+ +-..|+|+++.
T Consensus 3 ~Fqv~RRv-~NklQ~ilFn~ 21 (51)
T PF11522_consen 3 SFQVCRRV-INKLQHILFNT 21 (51)
T ss_dssp TTHHHHHH-HHHHT--SS-S
T ss_pred hhHHHHHH-HHHHHHHHhCC
Confidence 48999985 56678887653
No 8
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=25.63 E-value=75 Score=33.20 Aligned_cols=45 Identities=18% Similarity=0.420 Sum_probs=34.2
Q ss_pred CCchHHHHH----HcCCCCCCChHHhhccCCHHHHHHHHHhhCC---CCCcccccccccc
Q psy722 280 VPSYSEYRE----FCNLPPVNTWTSLLKSLDNSTVHRYQDLYSF---PQDLDLWSAGVSE 332 (416)
Q Consensus 280 lp~yn~~R~----~~gl~~~~sf~dl~~~~~~~~~~~l~~lY~~---~ddiDL~vG~l~E 332 (416)
||.|..|-+ ++.|+|.++|+|.. ..|.=+|.| |..++.|+|-|-+
T Consensus 53 lPDY~kfl~qGs~fLeL~pp~DldeAl--------n~L~IlY~HVPSVT~~PVylG~LD~ 104 (487)
T PF11230_consen 53 LPDYAKFLKQGSEFLELEPPKDLDEAL--------NNLLILYHHVPSVTSFPVYLGQLDR 104 (487)
T ss_pred CccHHHHHhccchhcccCCcccHHHHH--------HhhhHHhhcCCccCCccceeccHhh
Confidence 899999987 78999999997654 456667864 6777888876543
No 9
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=25.42 E-value=1.7e+02 Score=24.42 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhCCCCCchHhHHHHHHHHHHHHHHHH
Q psy722 93 LGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHIT 139 (416)
Q Consensus 93 l~~lhtlf~ReHNria~~L~~~np~w~De~lFqeAR~ivia~~Q~Iv 139 (416)
+.-||+ .=|+|-+|+..- .++.-+++++++.+|.....-||..+
T Consensus 32 V~RLHI-LkrF~~yL~~~~--~~~~~~e~~~~~~~R~~L~~AY~dFv 75 (105)
T PF03206_consen 32 VNRLHI-LKRFGQYLRAAD--FAPGLSEEEDWAAYRRALERAYQDFV 75 (105)
T ss_pred HhhHHH-HHHHHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 344665 468888887762 23778899999999999999988876
No 10
>PRK02866 cyanate hydratase; Validated
Probab=25.38 E-value=1.2e+02 Score=26.83 Aligned_cols=63 Identities=22% Similarity=0.345 Sum_probs=39.7
Q ss_pred HHHHHH-cCCCchHHHHHHcCCCCCCChHHhhc--cCCHHHHHHHHHhhCCCCCccccccccccccCCCC
Q psy722 272 LQRARE-HGVPSYSEYREFCNLPPVNTWTSLLK--SLDNSTVHRYQDLYSFPQDLDLWSAGVSEIPIGDS 338 (416)
Q Consensus 272 IqRgRd-~Glp~yn~~R~~~gl~~~~sf~dl~~--~~~~~~~~~l~~lY~~~ddiDL~vG~l~E~~~~G~ 338 (416)
|..+|. .|| ++.+..+.+|+++.-.-.-+.+ .++++.++++.++.+-.++ .+-.|.+.|..|+
T Consensus 10 Ll~AK~~kGL-Tw~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kla~~LgL~~~---~~~~l~~~P~rg~ 75 (147)
T PRK02866 10 ILAAKKEKGL-TWADIAEAIGLSEVWVTAALLGQMTLPAEEAEKVAELLGLDED---AVALLQEVPYRGS 75 (147)
T ss_pred HHHHHHHcCC-CHHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHH---HHHHHhcCCcCCC
Confidence 444554 566 7888888999886533333332 2678889999888863332 2335666776664
No 11
>PF14043 WVELL: WVELL protein
Probab=21.08 E-value=1.8e+02 Score=22.65 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=21.2
Q ss_pred HhHHHHHHHhhhCCCCCchHhHHHHHHHHHH
Q psy722 103 EHNRIAHELSVVNPHWSDEQLYQETRHILAA 133 (416)
Q Consensus 103 eHNria~~L~~~np~w~De~lFqeAR~ivia 133 (416)
.+.+++.+|...||..+ |.+||-+|.-
T Consensus 3 ~~e~Lt~~LlekN~~Ls----~~qArtWVEl 29 (75)
T PF14043_consen 3 YFERLTNELLEKNPMLS----YEQARTWVEL 29 (75)
T ss_pred HHHHHHHHHHHhCCCCC----HHHHHHHHHH
Confidence 37899999999999876 5678876643
No 12
>COG4286 Uncharacterized conserved protein related to MYG1 family [Function unknown]
Probab=20.76 E-value=1.5e+02 Score=29.06 Aligned_cols=38 Identities=24% Similarity=0.471 Sum_probs=30.9
Q ss_pred HHHHHhhhCCCCCchH--------hHHHHHHHHHHHHHHHHHHhhhhH
Q psy722 107 IAHELSVVNPHWSDEQ--------LYQETRHILAAIVQHITYNEFLPR 146 (416)
Q Consensus 107 ia~~L~~~np~w~De~--------lFqeAR~ivia~~Q~Iv~~E~Lp~ 146 (416)
+.+.+..-||.|+||+ -+|-|+..+.+.+-.|+ -|+|+
T Consensus 145 l~~iv~~~np~~~~e~~~d~~F~~al~~a~~~l~~~~~~~~--~w~~a 190 (306)
T COG4286 145 LPDIVESFNPDWSDEDADDEGFLEALAFASDFLDNLFKTIV--SWLRA 190 (306)
T ss_pred hHHHHHhcCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHHH--hhhHH
Confidence 6788888899998643 67788888888888888 78885
Done!