Query psy722
Match_columns 416
No_of_seqs 145 out of 1045
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 21:10:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy722.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/722hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2v_C Myeloperoxidase; heme-p 100.0 9E-113 3E-117 879.9 30.9 388 7-408 46-444 (466)
2 3q9k_A Lactoperoxidase, LPO; b 100.0 2E-112 5E-117 897.1 31.5 390 5-408 170-571 (595)
3 1q4g_A Prostaglandin G/H synth 100.0 5.1E-95 1.8E-99 761.9 25.4 361 9-408 186-553 (553)
4 3nt1_A Prostaglandin-endoperox 100.0 1.1E-94 3.7E-99 759.6 22.4 359 11-410 188-555 (587)
5 3lqv_P Splicing factor 3B subu 23.2 50 0.0017 21.4 2.2 18 106-123 11-28 (39)
6 2vog_B BCL-2-modifying factor; 17.6 57 0.002 19.0 1.4 15 341-356 10-24 (27)
7 2ju0_B Phosphatidylinositol 4- 17.5 21 0.00072 24.8 -0.6 18 123-141 4-21 (52)
8 3r8n_R 30S ribosomal protein S 16.4 64 0.0022 22.5 1.7 19 266-284 34-52 (55)
9 1dw9_A Cyanate lyase; cyanate 15.0 76 0.0026 27.1 2.2 64 272-339 18-84 (156)
10 1tke_A Threonyl-tRNA synthetas 14.4 1.9E+02 0.0063 25.6 4.8 35 358-394 99-133 (224)
No 1
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Probab=100.00 E-value=9.3e-113 Score=879.95 Aligned_cols=388 Identities=38% Similarity=0.681 Sum_probs=351.8
Q ss_pred CCcccccccCCCccccccCCCCCHHHhhhhhcccC--CcccccccccCCCCCCCCCCCCCCCCCCCCCCC--CCcccccc
Q psy722 7 KSSRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDLGLKPLLPLKTEQPDDGCIRPH--RDLYCFLA 82 (416)
Q Consensus 7 ~~preq~N~~T~~lDlS~vYGs~~~~~~~LR~~~~--G~L~~~~~~~~~g~~~~lP~~~~~~~~~c~~~~--~~~~~~~~ 82 (416)
++||||+|++|||||||+||||+++++.+||++++ ||||++..+..+|. +++|... .....|.... ....||++
T Consensus 46 ~~~req~N~~T~~lD~S~vYGs~~~~~~~LR~~~~~~G~Lk~~~~~~~~g~-~~lP~~~-~~~~~c~~~~~~~~~~cf~~ 123 (466)
T 1d2v_C 46 ITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGR-ALLPFDN-LHDDPCLLTNRSARIPCFLA 123 (466)
T ss_dssp SSCCCBEECSCSSSSCHHHHCSSHHHHHHHBCCSSSSCCBCCCSSCCBTTB-CCCCBCC-CTTCSGGGGCTTTCCCCBCC
T ss_pred CCHHHHhhccccccccccCcCCCHHHHHHHhccCCCCCeeccCCccCCCCC-cCCCCCC-CCCCcccccccCCCcchhcc
Confidence 45899999999999999999999999999999987 99997533334563 6777653 2334576422 23569999
Q ss_pred CCCccccchHHHHHHHHHHHHhHHHHHHHhhhCCCCCchHhHHHHHHHHHHHHHHHHHHhhhhHhhccchhhhccccccc
Q psy722 83 GDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKH 162 (416)
Q Consensus 83 GD~R~ne~~~l~~lhtlf~ReHNria~~L~~~np~w~De~lFqeAR~ivia~~Q~Iv~~E~Lp~llG~~~~~~~~l~~~~ 162 (416)
||.|+||+|+|++|||||+|||||||++|+++||+|+||+||||||+||||+||||||+||||+|||.+.++++
T Consensus 124 GD~R~ne~p~l~~lhtlflReHNria~~L~~~nP~W~DE~LFqeAR~Iv~a~~Q~I~~~EyLp~ilG~~~~~~~------ 197 (466)
T 1d2v_C 124 GDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKY------ 197 (466)
T ss_dssp SSTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH------
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhHHHHHHHHhCchhhhhc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred CCCCCCCCCCCCCChhHHHHhhhhhhhcccCCcccccccccccc---ccccchhhhhcCCcCCCCCCchhHHHhHHhhcc
Q psy722 163 YGYSDDYDPYIDATIPSAFGTAAFRFGHSLLPKSMERWSVTNKF---IASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQA 239 (416)
Q Consensus 163 ~~~~~~y~~~v~p~i~~EFa~aayRfgHS~i~~~~~~~~~~~~~---~~~~~l~d~~~~p~~l~~~~~~d~~~~g~~~q~ 239 (416)
.+++.+|++.++|+|++|| +|||||||||||+.+.++++++.. .+.++|++.|++|+.+...+++|++++||+.|+
T Consensus 198 ~~~~~gy~~~v~p~isnEF-~aafRfgHsli~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~g~d~~lrgl~~q~ 276 (466)
T 1d2v_C 198 LPTYRSYNDSVDPRIANVF-TNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATP 276 (466)
T ss_dssp SCCCCCCCTTSCCSCBHHH-HHHGGGGGGGCCSEEECBCTTSSBCSSCSEEEGGGTTTCHHHHHHTTCHHHHHHHHHHSE
T ss_pred CCcccCCCCCCCCchhHHH-HHHHhcccccCchhhccccccccccCCCCceeHHHHhcChHHHhhccCchHHHHHHhhCc
Confidence 2445889999999999999 899999999999999999887643 357899999999987777789999999999999
Q ss_pred cC--CCCCCCCHHHHhhccCCCCCcccchhHHhhHHHHHHcCCCchHHHHHHcCCCCCCChHHhhccC-CHHHHHHHHHh
Q psy722 240 AL--PMDDAITTQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSL-DNSTVHRYQDL 316 (416)
Q Consensus 240 ~~--~~D~~~~~~l~~~lf~~~~~~~g~DL~a~nIqRgRd~Glp~yn~~R~~~gl~~~~sf~dl~~~~-~~~~~~~l~~l 316 (416)
++ +.|..++++|+++||+.+ +..|+||+++|||||||||||+||+||++|||++++||+||++.+ +++++++|+++
T Consensus 277 a~~~~~d~~l~~~l~~~lf~~~-~~~~~DL~alnIqRgRDhGlp~YN~~R~~~gL~~~~tf~dl~~~~~d~~~~~~L~~l 355 (466)
T 1d2v_C 277 AKLNRQNQIAVDEIRERLFEQV-MRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQ 355 (466)
T ss_dssp EECCBTTBCSCHHHHTCBTGGG-SSSCBCHHHHHHHHHHHTTCCCHHHHHHHTTCCCCCSHHHHHHHHTCHHHHHHHHHH
T ss_pred cccccCchhhhHHHHHHhhccc-CccchhHHHHHHHHHHHcCCCCHHHHHHHcCCCCCCCHHHHhhccCCHHHHHHHHHH
Confidence 87 679999999999999864 467999999999999999999999999999999999999999543 68999999999
Q ss_pred hCCCCCccccccccccccCCCCCCChhHHHHHHHHHHHhhhcCcceeecCCCCCCCCHHHHHHHHhcchhHHHhhhCCCc
Q psy722 317 YSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDL 396 (416)
Q Consensus 317 Y~~~ddiDL~vG~l~E~~~~G~~~Gpt~~~ii~~qf~rl~~gDRf~ye~~~~~~~fT~~ql~~i~~~sla~iic~n~~~~ 396 (416)
|++|||||||||+|+|++++|+.+||||+|||++||+|||+|||||||| |+.||++|+++|+++||++|||+|++ +
T Consensus 356 Y~~~d~vDL~vG~laE~~~~G~~~Gptf~~ii~~qf~rLr~gDRf~yen---~~~ft~~ql~ei~~~sl~~iic~n~~-~ 431 (466)
T 1d2v_C 356 YGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWEN---EGVFSMQQRQALAQISLPRIICDNTG-I 431 (466)
T ss_dssp HSSGGGSCHHHHHHHSCCCTTCSSCHHHHHHHHHHHHHHHHTCTTCTTS---TTTSCHHHHHHHTTCCHHHHHHHHSS-C
T ss_pred hCCccccceeecccccccCCCCCCCHHHHHHHHHHHHHHHhcCcccccC---CCcccchhhHHHHhCCHHHHHHhcCC-C
Confidence 9999999999999999999999999999999999999999999999996 68999999999999999999999996 9
Q ss_pred cccccc-ccccCC
Q psy722 397 ITIQPW-ALEMPN 408 (416)
Q Consensus 397 ~~iq~~-~F~~~~ 408 (416)
+.||++ +|..++
T Consensus 432 ~~iq~~~~F~~~~ 444 (466)
T 1d2v_C 432 TTVSKNNIFMSNS 444 (466)
T ss_dssp CEEECSCTTTCCS
T ss_pred cccCCCccccCCC
Confidence 999999 999988
No 2
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=100.00 E-value=1.6e-112 Score=897.08 Aligned_cols=390 Identities=38% Similarity=0.698 Sum_probs=352.1
Q ss_pred cCCC--cccccccCCCccccccCCCCCHHHhhhhhcccC--CcccccccccCCCCCCCCCCCCCCCCCCCCCCC--CCcc
Q psy722 5 NNKS--SRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDLGLKPLLPLKTEQPDDGCIRPH--RDLY 78 (416)
Q Consensus 5 ~~~~--preq~N~~T~~lDlS~vYGs~~~~~~~LR~~~~--G~L~~~~~~~~~g~~~~lP~~~~~~~~~c~~~~--~~~~ 78 (416)
|..+ ||||+|++|||||+|+||||+++++.+||++++ |+||++.....+|. ++||.... ....|.... ....
T Consensus 170 ~~~~~~~reQiN~~Ts~lD~S~VYGss~~~~~~LR~~~~~~G~Lk~~~~~~~~g~-~~lP~~~~-~~~~c~~~~~~~~~~ 247 (595)
T 3q9k_A 170 PPYQSLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGL-AYLPFNNK-KPSPCEFINTTARVP 247 (595)
T ss_dssp SCCCSSCCCBEECSCSSSSCHHHHCSSHHHHHHTBCCSSTTCCBCCCSSCCBTTB-CCCCBCCC-SSCHHHHTCTTTCCC
T ss_pred CCCCcchHhhhccccceeeeeeccCCCHHHHHHHhCCCCCCceeecccccCCCCc-cCCCCCCC-CCCcccccCCCCCCc
Confidence 4556 999999999999999999999999999999998 99997644445774 67777633 224564322 2356
Q ss_pred ccccCCCccccchHHHHHHHHHHHHhHHHHHHHhhhCCCCCchHhHHHHHHHHHHHHHHHHHHhhhhHhhccchhhhccc
Q psy722 79 CFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGL 158 (416)
Q Consensus 79 ~~~~GD~R~ne~~~l~~lhtlf~ReHNria~~L~~~np~w~De~lFqeAR~ivia~~Q~Iv~~E~Lp~llG~~~~~~~~l 158 (416)
||++||.|+||+|+|++|||||+|||||||++|+++||+|+||+||||||+||||+||||||+||||+|||.+ +.++
T Consensus 248 cf~aGD~R~ne~p~L~~lhtlflREHNria~~L~~~nP~W~dE~LfQeAR~Iv~A~~Q~Ity~E~LP~ilG~~-~~~~-- 324 (595)
T 3q9k_A 248 CFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSE-MQKW-- 324 (595)
T ss_dssp CBCCSSTTTTSBHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG-HHHH--
T ss_pred ccccCCccccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHeeeeeHHHHHHHHhCch-hhhh--
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 5442
Q ss_pred ccccCCCCCCCCCCCCCChhHHHHhhhhhhhcccCCcccccccccccc---ccccchhhhhcCCcCCCCCCchhHHHhHH
Q psy722 159 ELKHYGYSDDYDPYIDATIPSAFGTAAFRFGHSLLPKSMERWSVTNKF---IASRRFSEMFQQPYDLNKPGWLDQYLVGM 235 (416)
Q Consensus 159 ~~~~~~~~~~y~~~v~p~i~~EFa~aayRfgHS~i~~~~~~~~~~~~~---~~~~~l~d~~~~p~~l~~~~~~d~~~~g~ 235 (416)
. +.+.+|++.++|+|++|| +|||||||||||+.+.++++++.. ...++|++.|++|+.+...+++|.+++||
T Consensus 325 ~----~~~~gY~~~v~p~i~neF-~aafRfgHsli~~~~~~~~~~~~~~~~~~~~~L~~~ff~~~~~~~~~gid~llrGl 399 (595)
T 3q9k_A 325 I----PPYQGYNNSVDPRISNVF-TFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGL 399 (595)
T ss_dssp S----CSCCCCCTTSCCCCBTTH-HHHGGGGGGGCCSEEECBCTTSSBCSTTCEEEGGGGBTCCHHHHTTTCSHHHHHHH
T ss_pred C----CCccCCCCCCCCccHHHH-HHHHHhHHhhCcchhhccCccccccCCCCceeHHHHhcChHHhhhccchHHHHHHH
Confidence 1 335789999999999999 999999999999999999887754 35799999999999877788999999999
Q ss_pred hhcccC--CCCCCCCHHHHhhccCCCCCcccchhHHhhHHHHHHcCCCchHHHHHHcCCCCCCChHHhhccC-CHHHHHH
Q psy722 236 LNQAAL--PMDDAITTQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSL-DNSTVHR 312 (416)
Q Consensus 236 ~~q~~~--~~D~~~~~~l~~~lf~~~~~~~g~DL~a~nIqRgRd~Glp~yn~~R~~~gl~~~~sf~dl~~~~-~~~~~~~ 312 (416)
+.|+++ ++|.+++++|+++||+.+....|+||+|+|||||||||||+||+||++|||+++++|+||++.+ +++++++
T Consensus 400 ~~q~a~~~~~d~~~~~~l~~~Lf~~~~~~~g~DL~alnIqRgRdhGlp~yn~~R~~~gl~~~~sf~dl~~~~~~~~~~~~ 479 (595)
T 3q9k_A 400 LAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKK 479 (595)
T ss_dssp HHSEEECCCTTSCSCHHHHTCEECTTSCSEEECHHHHHHHHHHHTTCCCHHHHHHHTTCCCCCSHHHHHHHHTCHHHHHH
T ss_pred hhCcccccCCCccCCHHHHHHhccCCCccccccHHHHHHHHHHHhCCCCHHHHHHHcCCCCCCCHHHHhhhcCcHHHHHH
Confidence 999998 8999999999999998655445999999999999999999999999999999999999999654 5788899
Q ss_pred HHHhhCCCCCccccccccccccCCCCCCChhHHHHHHHHHHHhhhcCcceeecCCCCCCCCHHHHHHHHhcchhHHHhhh
Q psy722 313 YQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDN 392 (416)
Q Consensus 313 l~~lY~~~ddiDL~vG~l~E~~~~G~~~Gpt~~~ii~~qf~rl~~gDRf~ye~~~~~~~fT~~ql~~i~~~sla~iic~n 392 (416)
|+++|++|||||||||+|+|++++|+.+||||+|||++||+|||+|||||||| |+.||++||++|+|+|||+|||+|
T Consensus 480 l~~lY~~~d~iDl~vG~l~E~~~~g~~~Gptf~~ii~~qf~~lr~gDRf~yen---~~~ft~~ql~ei~~~sla~iic~n 556 (595)
T 3q9k_A 480 LMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWEN---PGVFTEKQRDSLQKVSFSRLICDN 556 (595)
T ss_dssp HHHHHSSGGGSCHHHHHHHSCCCTTBSSCHHHHHHHHHHHHHHHHTCTTCTTS---BTTBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHhCCccccceeecccccccCCCCCcCHHHHHHHHHHHHHHHhcCCCeecC---CCcCCHHHHHHHHhCCHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999997 579999999999999999999999
Q ss_pred CCCcccccccccccCC
Q psy722 393 ADDLITIQPWALEMPN 408 (416)
Q Consensus 393 ~~~~~~iq~~~F~~~~ 408 (416)
++ ++.||+++|..++
T Consensus 557 ~~-i~~vq~~~F~~~~ 571 (595)
T 3q9k_A 557 TH-ITKVPLHAFQANN 571 (595)
T ss_dssp SS-CCEEESSTTSCCC
T ss_pred CC-cccccHhhccCCC
Confidence 77 9999999999654
No 3
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=100.00 E-value=5.1e-95 Score=761.86 Aligned_cols=361 Identities=20% Similarity=0.261 Sum_probs=307.6
Q ss_pred cccccccCCCccccccCCCCCHHHhhhhhcccCCcccccccccCCCCCCCCCCCCCCCCCCCCCCC--CCccccccCCCc
Q psy722 9 SRVQTNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDLGLKPLLPLKTEQPDDGCIRPH--RDLYCFLAGDNR 86 (416)
Q Consensus 9 preq~N~~T~~lDlS~vYGs~~~~~~~LR~~~~G~L~~~~~~~~~g~~~~lP~~~~~~~~~c~~~~--~~~~~~~~GD~R 86 (416)
+.+++|++|||||||+||||+++++.+||++++|+||++. .+|. .++|.....+ ..|..+. ....||++||.|
T Consensus 186 ~~~~~N~~T~~lD~S~vYGs~~~~~~~LR~~~~G~Lk~~~---~~g~-~~~P~~~~~~-~~~~~~~~~~~~~cf~~GD~R 260 (553)
T 1q4g_A 186 GPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQM---LNGE-VYPPSVEEAP-VLMHYPRGIPPQSQMAVGQEV 260 (553)
T ss_dssp CTTBBSCTTCSSSCHHHHCSSHHHHHHHBCSSTTCBCCEE---ETTE-EECCBTTTSC-CCCCCCTTCCGGGSBCCSSTT
T ss_pred chhhcccccccccccccCCCCHHHHHhhhcCCCCEecccC---CCCc-cCCCccCCCC-CcccCCCCCCchhccccCccc
Confidence 4578999999999999999999999999999999999642 3562 4445432211 1121111 136799999999
Q ss_pred cccchHHHHHHHHHHHHhHHHHHHHhhhCCCCCchHhHHHHHHHHHHHHHHHHHHhhhhHhhccchhhhcccccccCCCC
Q psy722 87 VNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYS 166 (416)
Q Consensus 87 ~ne~~~l~~lhtlf~ReHNria~~L~~~np~w~De~lFqeAR~ivia~~Q~Iv~~E~Lp~llG~~~~~~~~l~~~~~~~~ 166 (416)
+||+|+|++|||||+|||||||++|+++||+|+||+||||||+||||+||||||+||||+|+|...+..++......+
T Consensus 261 ~ne~p~L~~lhtlflReHNria~~L~~~nP~W~DE~LFQeAR~Iv~a~~Q~I~~~EyLp~ilg~~~~~~~dp~~~~~~-- 338 (553)
T 1q4g_A 261 FGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLFGA-- 338 (553)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCSSCCCCCGGGGTTS--
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCcccccCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999865544432222111
Q ss_pred CCCCCCCCCChhHHHHhhhhhhhcccCCccccccccccccccccchhhhhcCCcCCCCCCchhHHHhHHhhcccCCCCCC
Q psy722 167 DDYDPYIDATIPSAFGTAAFRFGHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDA 246 (416)
Q Consensus 167 ~~y~~~v~p~i~~EFa~aayRfgHS~i~~~~~~~~~~~~~~~~~~l~d~~~~p~~l~~~~~~d~~~~g~~~q~~~~~D~~ 246 (416)
...++|+|++||++ ||| ||||||+.+.+.+ ..++|++.|++|..+. .++++++++||..|+++++|.
T Consensus 339 ---~~~~~~~is~EF~~-ayR-~Hslip~~~~~~~------~~~~l~~~ff~~~~~~-~~g~~~ll~g~~~q~a~~~~~- 405 (553)
T 1q4g_A 339 ---QFQYRNRIAMEFNQ-LYH-WHPLMPDSFRVGP------QDYSYEQFLFNTSMLV-DYGVEALVDAFSRQPAGRIGG- 405 (553)
T ss_dssp ---CCCCCCCCBHHHHH-HTC-CGGGSCSSEEETT------EEECHHHHTTCSSHHH-HHCHHHHHHHHHHSBCBCSSS-
T ss_pred ---CcccCcchhHHHHH-Hhc-ccccCCcccccCC------CcccHHHHhcCchhhh-cccHHHHHHHhhhchhhcccc-
Confidence 12467899999975 699 5999999987642 3688999999996554 478999999999999999852
Q ss_pred CCHHHHhhccCCCCCcccchhHHhhHHHHHHcCCCchHHHHHHcCCCCCCChHHhhccCCHHHHHHHHHhhCCCCCcccc
Q psy722 247 ITTQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDNSTVHRYQDLYSFPQDLDLW 326 (416)
Q Consensus 247 ~~~~l~~~lf~~~~~~~g~DL~a~nIqRgRd~Glp~yn~~R~~~gl~~~~sf~dl~~~~~~~~~~~l~~lY~~~ddiDL~ 326 (416)
+++. +..+.||+++|||||||||||+||+||++|||+++++|+||++ +++++++|+++|++|||||||
T Consensus 406 ----~~n~------~~~~~dL~alnIqRgRDhGlp~YN~~R~~~gL~~~~tf~dl~~--d~~~~~~L~~lY~~~ddiDL~ 473 (553)
T 1q4g_A 406 ----GRNI------DHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTG--EKEMAAELEELYGDIDALEFY 473 (553)
T ss_dssp ----SSCB------CTTTHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHS--SSHHHHHHHHHHSSGGGCCHH
T ss_pred ----cccC------cHHHHHHHHHHHHHHHhhCCCcHHHHHHHcCCCCCCCHHHhcC--CHHHHHHHHHHhcChhhcccc
Confidence 2221 2457899999999999999999999999999999999999998 899999999999999999999
Q ss_pred ccccccccCCCCCCChhHHHHHHH-HHHHhh---hcCcceeecCCCCCCCCHHHHHHHHh-cchhHHHhhhCCCcccccc
Q psy722 327 SAGVSEIPIGDSLIGPTFSCIIAR-TFRDLK---RGDRFWYENSGSPSSFSLAQLQEIRK-VKLSRILCDNADDLITIQP 401 (416)
Q Consensus 327 vG~l~E~~~~G~~~Gpt~~~ii~~-qf~rl~---~gDRf~ye~~~~~~~fT~~ql~~i~~-~sla~iic~n~~~~~~iq~ 401 (416)
||+|+|++++|+++||||+|||++ ||++|+ .|||||| +|++||++|+.+|+| +|||+|||+|++ .||.
T Consensus 474 vG~laE~~~~G~~~Gpt~~~ii~~~~~~~l~~~~~~d~~~~----~~~~ft~~ql~ei~~~~sla~iic~n~~---~~p~ 546 (553)
T 1q4g_A 474 PGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYW----KASTFGGEVGFNLVKTATLKKLVCLNTK---TCPY 546 (553)
T ss_dssp HHHHHSCBCTTCSSBHHHHHHHHHHHHHHHHTSGGGSTTTC----SGGGGTSHHHHHHHHTCCHHHHHHTTSS---SCCC
T ss_pred ccccccccCCCCCccHHHHHHHHHHHHHHHhhCcCCCcccc----CCCCcCHHHHHHHHHhCCHHHHHHHcCC---CCCc
Confidence 999999999999999999999998 699997 5899888 368999999999866 699999999997 7999
Q ss_pred cccccCC
Q psy722 402 WALEMPN 408 (416)
Q Consensus 402 ~~F~~~~ 408 (416)
++|.+|+
T Consensus 547 ~~F~~p~ 553 (553)
T 1q4g_A 547 VSFHVPD 553 (553)
T ss_dssp CCSBCCC
T ss_pred ccccCCC
Confidence 9999986
No 4
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=100.00 E-value=1.1e-94 Score=759.64 Aligned_cols=359 Identities=24% Similarity=0.337 Sum_probs=304.9
Q ss_pred cccccCCCccccccCCCCCHHHhhhhhcccCCcccccccccCCCCCCCCCCCCCCCCCCCCCCC--CCccccccCCCccc
Q psy722 11 VQTNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDLGLKPLLPLKTEQPDDGCIRPH--RDLYCFLAGDNRVN 88 (416)
Q Consensus 11 eq~N~~T~~lDlS~vYGs~~~~~~~LR~~~~G~L~~~~~~~~~g~~~~lP~~~~~~~~~c~~~~--~~~~~~~~GD~R~n 88 (416)
...|+.|||||+|+||||+++++++||++++|+||++. .+|. .++|.. .+....|..+. ....||++||.|+|
T Consensus 188 ~~~n~~t~~lD~S~IYGss~~~~~~LR~~~~G~Lk~~~---~~g~-~~pP~~-~~~~~~~~~~~~~~~~~cf~~GD~R~n 262 (587)
T 3nt1_A 188 GFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQV---IGGE-VYPPTV-KDTQVEMIYPPHIPENLQFAVGQEVFG 262 (587)
T ss_dssp TBBSCTTCSCCCHHHHCSSHHHHHHHBCSSTTCBCCEE---ETTE-EECCBH-HHHCCCCCCCTTSCGGGCBCCSSTTTT
T ss_pred ccccCccceeeeccCCCCCHHHHHhccCCCCCeeeeec---CCCc-cCCCCC-CCcccccccCCCCCcccccccCCcccc
Confidence 45899999999999999999999999999999999642 4662 444443 22112344332 23679999999999
Q ss_pred cchHHHHHHHHHHHHhHHHHHHHhhhCCCCCchHhHHHHHHHHHHHHHHHHHHhhhhHhhccchhhhcccccccCCCCCC
Q psy722 89 EQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDD 168 (416)
Q Consensus 89 e~~~l~~lhtlf~ReHNria~~L~~~np~w~De~lFqeAR~ivia~~Q~Iv~~E~Lp~llG~~~~~~~~l~~~~~~~~~~ 168 (416)
|+|+|++|||||+|||||||++|+++||+|+||+||||||+||+|+||||||+||||+|+|...+..+++.... +
T Consensus 263 e~pgL~alhtlflREHNriA~~L~~~nP~W~DE~LFQeAR~Iv~A~~Q~Ity~EyLP~ilG~~~~~~~dp~~~~-~---- 337 (587)
T 3nt1_A 263 LVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLF-N---- 337 (587)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHC-CTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCSSCCCCCGGGGT-T----
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhheeeeHHHHHHHhcCcchhcccCccccc-C----
Confidence 99999999999999999999999999999999999999999999999999999999999998876555544332 2
Q ss_pred CCCCCCCChhHHHHhhhhhhhcccCCccccccccccccccccchhhhhcCCcCCCCCCchhHHHhHHhhcccCCCCCCCC
Q psy722 169 YDPYIDATIPSAFGTAAFRFGHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDAIT 248 (416)
Q Consensus 169 y~~~v~p~i~~EFa~aayRfgHS~i~~~~~~~~~~~~~~~~~~l~d~~~~p~~l~~~~~~d~~~~g~~~q~~~~~D~~~~ 248 (416)
+...++|+|++||++| || +|||||+.+.+. ...++|+++|++|..+. .+++|++++||+.|+++++|..
T Consensus 338 ~~~~~~~~is~eF~~a-~~-~Hslip~~~~~~------~~~~~l~~~ff~p~~~~-~~gid~llrgl~~q~a~~~~~~-- 406 (587)
T 3nt1_A 338 QQFQYQNRIASEFNTL-YH-WHPLLPDTFNIE------DQEYSFKQFLYNNSILL-EHGLTQFVESFTRQIAGRVAGG-- 406 (587)
T ss_dssp SCCCSCCCCBHHHHHH-TC-CGGGSCSSEEET------TEEECHHHHTTCTHHHH-HHHHHHHHHHHHHSBCBCSSSS--
T ss_pred CCCCcCchHHHHHHHH-Hh-ccccCCcccccC------CCcccHHHHhcCccccc-hhhHHHHHHHHHHhhhhccccc--
Confidence 1224568999999754 65 699999998754 24689999999996543 5789999999999999998742
Q ss_pred HHHHhhccCCCCCcccchhHHhhHHHHHHcCCCchHHHHHHcCCCCCCChHHhhccCCHHHHHHHHHhhCCCCCcccccc
Q psy722 249 TQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDNSTVHRYQDLYSFPQDLDLWSA 328 (416)
Q Consensus 249 ~~l~~~lf~~~~~~~g~DL~a~nIqRgRd~Glp~yn~~R~~~gl~~~~sf~dl~~~~~~~~~~~l~~lY~~~ddiDL~vG 328 (416)
+| .+..++||+|+|||||||||||+||+||++|||+++++|+||++ +++++++|+++|++|||||||||
T Consensus 407 ---~n------~~~~~~DL~alnIqRGRDhGlp~YN~~R~~cgL~~~~tf~dl~~--~~~~~~~L~~lY~~~ddIDL~vG 475 (587)
T 3nt1_A 407 ---RN------VPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTG--EKEMAAELKALYSDIDVMELYPA 475 (587)
T ss_dssp ---SC------BCGGGHHHHHHHHHHHHHTTCCCHHHHHHHTTCCCCSSHHHHHS--SSHHHHHHHHHHSSGGGCCHHHH
T ss_pred ---cc------CchHHHHHHHHHHHHHHhhCCCcHHHHHHHcCCCCCCCHHHhCC--CHHHHHHHHHHhCCHhheeeecc
Confidence 12 12467899999999999999999999999999999999999997 79999999999999999999999
Q ss_pred ccccccCCCCCCChhHHHHHHHHH------HHhhhcCcceeecCCCCCCCCHHH-HHHHHhcchhHHHhhhCCCcccccc
Q psy722 329 GVSEIPIGDSLIGPTFSCIIARTF------RDLKRGDRFWYENSGSPSSFSLAQ-LQEIRKVKLSRILCDNADDLITIQP 401 (416)
Q Consensus 329 ~l~E~~~~G~~~Gpt~~~ii~~qf------~rl~~gDRf~ye~~~~~~~fT~~q-l~~i~~~sla~iic~n~~~~~~iq~ 401 (416)
+++|++++|+++||||+|| +.|| .++++||||| +|++||.+| +++|+++||++|||+|++. ||.
T Consensus 476 glaE~~~pG~~vGpTf~ci-~~qf~l~~~~~~~r~gDrfw-----~~~~Ft~~qgl~~I~~~sL~~lic~N~~~---~p~ 546 (587)
T 3nt1_A 476 LLVEKPRPDAIFGETMVEL-GAPFSLKGLMGNPICSPQYW-----KPSTFGGEVGFKIINTASIQSLICNNVKG---CPF 546 (587)
T ss_dssp HHHSCCSTTCSSCHHHHHH-HHHHHHHHHHTSGGGSTTTS-----SGGGGTSHHHHHHHHTCCHHHHHHHHSTT---CCC
T ss_pred cccccCCCCccHHHHHHHH-HHHHHHHHHhcCcccCCccc-----CcCccChHHHHHHHHHCCHHHHHHhCCCC---CCc
Confidence 9999999999999999999 6664 7889999999 467999888 8999999999999999994 999
Q ss_pred cccccCCCC
Q psy722 402 WALEMPNDY 410 (416)
Q Consensus 402 ~~F~~~~~~ 410 (416)
++|.+|+.-
T Consensus 547 ~~F~~p~~~ 555 (587)
T 3nt1_A 547 TSFNVQDPQ 555 (587)
T ss_dssp CCSBCC---
T ss_pred ceeECCCcc
Confidence 999999863
No 5
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=23.21 E-value=50 Score=21.42 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=14.3
Q ss_pred HHHHHHhhhCCCCCchHh
Q psy722 106 RIAHELSVVNPHWSDEQL 123 (416)
Q Consensus 106 ria~~L~~~np~w~De~l 123 (416)
|+-+++-..|-.|+||+|
T Consensus 11 ~~~~ei~~RNrpltDEeL 28 (39)
T 3lqv_P 11 RWEREIDERNRPLSDEEL 28 (39)
T ss_dssp HHHHHHHHTTCCCCHHHH
T ss_pred HhhccchhhcCCCCHHHH
Confidence 455677778999999987
No 6
>2vog_B BCL-2-modifying factor; protein-protein complex, BH3, apoptosis, Pro-surviVal; 1.9A {Mus musculus}
Probab=17.62 E-value=57 Score=19.04 Aligned_cols=15 Identities=33% Similarity=0.698 Sum_probs=10.5
Q ss_pred ChhHHHHHHHHHHHhh
Q psy722 341 GPTFSCIIARTFRDLK 356 (416)
Q Consensus 341 Gpt~~~ii~~qf~rl~ 356 (416)
+.-..|| ++||.|+.
T Consensus 10 a~KLQcI-~DQFHR~h 24 (27)
T 2vog_B 10 ARKLQCI-ADQFHRLH 24 (27)
T ss_dssp HHHHHHH-HHHHHHHH
T ss_pred HHHHHHH-HHHHHHHH
Confidence 3345565 99999886
No 7
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=17.52 E-value=21 Score=24.80 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy722 123 LYQETRHILAAIVQHITYN 141 (416)
Q Consensus 123 lFqeAR~ivia~~Q~Iv~~ 141 (416)
-||.+|++ +-..|+|+++
T Consensus 4 ~Fqv~Rr~-~NklQ~ilFn 21 (52)
T 2ju0_B 4 GFQVARRV-LNNLQTNLFN 21 (52)
T ss_dssp TTHHHHHH-HHHHTCCSSC
T ss_pred hhHHHHHH-HHHHHHHHhC
Confidence 48999985 5567777653
No 8
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=16.44 E-value=64 Score=22.52 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=15.9
Q ss_pred hhHHhhHHHHHHcCCCchH
Q psy722 266 DLASINLQRAREHGVPSYS 284 (416)
Q Consensus 266 DL~a~nIqRgRd~Glp~yn 284 (416)
-..+.-|.|||.+||=||.
T Consensus 34 R~l~~AIKrAR~~~LlP~~ 52 (55)
T 3r8n_R 34 RQLARAIKRARYLSLLPYT 52 (55)
T ss_dssp HHHHHHHHHHHHTTSSCSC
T ss_pred HHHHHHHHHHHHhccCCcc
Confidence 3557789999999998885
No 9
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=14.96 E-value=76 Score=27.10 Aligned_cols=64 Identities=14% Similarity=0.177 Sum_probs=40.4
Q ss_pred HHHHHH-cCCCchHHHHHHcCCCCCCChHHhhc--cCCHHHHHHHHHhhCCCCCccccccccccccCCCCC
Q psy722 272 LQRARE-HGVPSYSEYREFCNLPPVNTWTSLLK--SLDNSTVHRYQDLYSFPQDLDLWSAGVSEIPIGDSL 339 (416)
Q Consensus 272 IqRgRd-~Glp~yn~~R~~~gl~~~~sf~dl~~--~~~~~~~~~l~~lY~~~ddiDL~vG~l~E~~~~G~~ 339 (416)
|..+|. -|| ++.+..+.+|+++.-.-.-+.+ .++++.+++|.++++-.++. +-.|.+.|..|+.
T Consensus 18 I~~AK~~KGL-Twe~IAe~iG~S~v~vtaa~lGQ~~ls~e~A~kLa~~LgL~~e~---~~~l~~~P~rg~~ 84 (156)
T 1dw9_A 18 ILLSKAKKDL-SFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDS---ILLLQMIPLRGCI 84 (156)
T ss_dssp HHHHHHHTTC-CHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHTTCCHHH---HHHTTSBCCCCCC
T ss_pred HHHHHHHcCC-CHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHH---HHHHhcCCcCCCC
Confidence 455555 455 7888888888775322222222 26788999999999733322 4467778887753
No 10
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=14.36 E-value=1.9e+02 Score=25.63 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=25.6
Q ss_pred cCcceeecCCCCCCCCHHHHHHHHhcchhHHHhhhCC
Q psy722 358 GDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNAD 394 (416)
Q Consensus 358 gDRf~ye~~~~~~~fT~~ql~~i~~~sla~iic~n~~ 394 (416)
+|+|+|+-.. +..+|+++++.|++. +.+||..|.+
T Consensus 99 ~~g~y~d~~~-~~~~t~edl~~IE~~-m~~iI~~~~p 133 (224)
T 1tke_A 99 DNGFYYDVDL-DRTLTQEDVEALEKR-MHELAEKNYD 133 (224)
T ss_dssp TTEEEEEEEC-SSCCCHHHHHHHHHH-HHHHHTTCCB
T ss_pred CCeEEEEEeC-CCCCCHHHHHHHHHH-HHHHHhCCCC
Confidence 4667777442 346999999998864 7788888766
Done!