RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy722
(416 letters)
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 529 bits (1364), Expect = 0.0
Identities = 187/383 (48%), Positives = 245/383 (63%), Gaps = 5/383 (1%)
Query: 10 RVQTNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDLGLKPLLPLKTEQPDDG 69
R Q N +TS++D + VYGSS A KLR ++GG LK + + LLP + P D
Sbjct: 1 REQLNQVTSFLDGSQVYGSSEEEARKLRTFKGGLLKT----QRRNGRELLPF-SNNPTDD 55
Query: 70 CIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRH 129
C CFLAGD RVNEQ L +HTLF+REHNRIA EL +NPHW DE+L+QE R
Sbjct: 56 CSLSSAGKPCFLAGDGRVNEQPGLTSMHTLFLREHNRIADELKKLNPHWDDERLFQEARK 115
Query: 130 ILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAFRFG 189
I+ A +QHITYNEFLP LLG++ M+K+GL L GY + YDP +D +I + F AAFRFG
Sbjct: 116 IVIAQMQHITYNEFLPILLGRELMEKFGLYLLTSGYFNGYDPNVDPSILNEFAAAAFRFG 175
Query: 190 HSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDAITT 249
HSL+P + ER + S ++F P L + G LD L G+ Q A +D T
Sbjct: 176 HSLVPGTFERLDENYRPQGSVNLHDLFFNPDRLYEEGGLDPLLRGLATQPAQKVDRFFTD 235
Query: 250 QVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDNST 309
++T H F + +G DLA++N+QR R+HG+P Y++YREFC LP T+ LL + T
Sbjct: 236 ELTTHFFFRGGNPFGLDLAALNIQRGRDHGLPGYNDYREFCGLPRATTFDDLLGIMSPET 295
Query: 310 VHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENSGSP 369
+ + + LY D+DL+ G+SE P+ L+GPTF+CII FR L+RGDRFWYEN G P
Sbjct: 296 IQKLRRLYKSVDDIDLYVGGLSEKPVPGGLVGPTFACIIGEQFRRLRRGDRFWYENGGQP 355
Query: 370 SSFSLAQLQEIRKVKLSRILCDN 392
SSF+ AQL EIRKV L+RI+CDN
Sbjct: 356 SSFTPAQLNEIRKVSLARIICDN 378
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 439 bits (1131), Expect = e-152
Identities = 176/396 (44%), Positives = 236/396 (59%), Gaps = 21/396 (5%)
Query: 10 RVQTNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDLGLKPLLPLKTEQPDDG 69
R Q N LTSY+D + VYGSS A KLR ++ G LKV +F K LLP P
Sbjct: 140 REQINQLTSYLDLSQVYGSSEEEADKLRTFKDGKLKVNGEFPPPNGKGLLPAPPPGPSGC 199
Query: 70 CIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRH 129
L CFLAGD+RVNE L LHTLF+REHNRIA EL +NPHWSDE+L+QE R
Sbjct: 200 -------LSCFLAGDSRVNENPGLTALHTLFLREHNRIADELKALNPHWSDEKLFQEARL 252
Query: 130 ILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAFRFG 189
I+ A Q ITYNE+LP LLG M+ L L Y YDP +D +I + F TAA+RFG
Sbjct: 253 IVIAQYQKITYNEYLPALLGPDLMRANWLLL----YYTGYDPNVDPSISNEFATAAYRFG 308
Query: 190 HSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDAITT 249
HSL+P +ER + F P + + G +D L G+ +Q A +D++++
Sbjct: 309 HSLIPPGLERLDEFRTIAPEIPLHDTFFNPSRILEEG-IDPLLRGLASQPAELLDNSLSD 367
Query: 250 QVTNHLF---QEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLD 306
++ N LF P G DLA++N+QR R+HG+P Y+EYR FC L P ++ L +
Sbjct: 368 ELRNRLFGPRNFPGS--GLDLAALNIQRGRDHGLPPYNEYRRFCGLKPATSFEDLTDEIG 425
Query: 307 NSTV-HRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYEN 365
+ + + ++LY P D+DLW G++E P+ L+GPTF+CIIA F L+ GDRFWYEN
Sbjct: 426 DEELAEKLKELYGDPDDIDLWVGGLAEKPVPGGLVGPTFACIIAEQFLRLRDGDRFWYEN 485
Query: 366 SGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQP 401
P F+ QL+EIRK L+R++CDN + +QP
Sbjct: 486 ---PGVFTGEQLEEIRKTTLARVICDNTPGITRVQP 518
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 401 bits (1032), Expect = e-138
Identities = 171/417 (41%), Positives = 246/417 (58%), Gaps = 25/417 (5%)
Query: 3 IVNNKSSRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDLGLKPLLP 60
+ N+ + R Q N LTSYIDA+ VYGSS A +LR+ G L+V + KPLLP
Sbjct: 30 LFNSVTPREQINQLTSYIDASNVYGSSDEEALELRDLASDRGLLRVGIVSE--AGKPLLP 87
Query: 61 LKTEQPDDGCIRPHRD-LYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWS 119
+ + P D P+ + CFLAGD+R NEQL L +HTL++REHNRIA EL +NPHW
Sbjct: 88 FERDSPMDCRRDPNESPIPCFLAGDHRANEQLGLTSMHTLWLREHNRIASELLELNPHWD 147
Query: 120 DEQLYQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPS 179
E +Y ETR I+ A +QHITY+ +LP++LG M+ G ++ G Y+P ++ +I +
Sbjct: 148 GETIYHETRKIVGAQMQHITYSHWLPKILGPVGMEMLG---EYRG----YNPNVNPSIAN 200
Query: 180 AFGTAAFRFGHSLLPKSMERWSVTNKFIASRR----FSEMFQQPYDLNKPGWLDQYLVGM 235
F TAAFRFGH+L+ + R + F + F PY L G +D L G+
Sbjct: 201 EFATAAFRFGHTLINPILFR--LDEDFQPIPEGHLPLHKAFFAPYRLVNEGGIDPLLRGL 258
Query: 236 LNQAA-LPM-DDAITTQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLP 293
AA + D + T++T LF E HE DLA++N+QR R+HG+P Y++YR+FCNL
Sbjct: 259 FATAAKDRVPDQLLNTELTEKLF-EMAHEVALDLAALNIQRGRDHGLPGYNDYRKFCNLS 317
Query: 294 PVNTWTSLLKSLDNSTV-HRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTF 352
T+ L + N V + + LY P ++DL+ G+ E + + +GPT +C++A F
Sbjct: 318 VAETFEDLKNEIKNDDVREKLKRLYGHPGNIDLFVGGILEDLLPGARVGPTLACLLAEQF 377
Query: 353 RDLKRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPND 409
R L+ GDRFWYEN P FS AQL +I+K L+R+LCDN D++ +Q +P +
Sbjct: 378 RRLRDGDRFWYEN---PGVFSPAQLTQIKKTSLARVLCDNGDNITRVQEDVFLVPGN 431
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 312 bits (801), Expect = e-103
Identities = 148/394 (37%), Positives = 216/394 (54%), Gaps = 26/394 (6%)
Query: 10 RVQTNSLTSYIDANFVYGSSPTLAAKLREY--RGGCLKVLPQFKDLGLKPLLPLKTEQPD 67
R Q N+LTS++DA+ VYGS P+LA LR + G L V +F D GL LLP + D
Sbjct: 12 REQINALTSFVDASMVYGSEPSLAKXLRNLTNQLGLLAVNQRFTDNGL-ALLPFENLHND 70
Query: 68 DGCIRPH-RDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQE 126
+R ++ CFLAGD RV+E L LHTL +REHNR+A EL +NPHW E LYQE
Sbjct: 71 PCALRNTSANIPCFLAGDTRVSENPGLAALHTLLLREHNRLARELHRLNPHWDGETLYQE 130
Query: 127 TRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAF 186
R I+ A+VQ ITY ++LP +LG+ + Y+ +D I + F T AF
Sbjct: 131 ARKIVGAMVQIITYRDYLPLILGEDAAARLPP-------YRGYNESVDPRIANVF-TTAF 182
Query: 187 RFGHSLLPKSMERWSVTNKFIASRRFSEM-----FQQPYDLNKPGWLDQYLVGMLNQAAL 241
R GH+ + + R + + ++ F + + + G +D L G++ A
Sbjct: 183 RRGHTTVQPFVFR--LDENYQPHPPNPQVPLHKAFFASWRIIREGGIDPILRGLMATPAK 240
Query: 242 PM--DDAITTQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWT 299
+ + ++ LFQ T G DLA++NLQR R+HG+P Y+ +R FC L
Sbjct: 241 LNNQNQMLVDELRERLFQ-QTKRMGLDLAALNLQRGRDHGLPGYNAWRRFCGLSQPQNLA 299
Query: 300 SLLKSLDNSTV-HRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRG 358
L L+N+ + + DLY P ++D+W GV+E + +GP +C+I+R FR ++ G
Sbjct: 300 ELAAVLNNTVLARKLLDLYGTPDNIDIWIGGVAEPLVPGGRVGPLLACLISRQFRRIRDG 359
Query: 359 DRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDN 392
DRFW+EN P F+ Q + +R V LSRI+CDN
Sbjct: 360 DRFWWEN---PGVFTEEQRESLRSVSLSRIICDN 390
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 309 bits (793), Expect = e-100
Identities = 155/408 (37%), Positives = 232/408 (56%), Gaps = 45/408 (11%)
Query: 9 SRVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDLGLKPLLPLKTEQP 66
R Q N LTS+IDA+ VYGS+ LA LR+ G L+V +F D G + LP + E+
Sbjct: 147 PREQINGLTSFIDASTVYGSTLALARSLRDLSSDDGLLRVNSKFDDSG-RDYLPFQPEEV 205
Query: 67 DDGCIRPH--RDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLY 124
P+ + CFLAGD R +E L L HTL++REHNR+A L +NPHW EQ+Y
Sbjct: 206 SSCNPDPNGGERVPCFLAGDGRASEVLTLTASHTLWLREHNRLARALKSINPHWDGEQIY 265
Query: 125 QETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTA 184
QE R I+ A+ Q IT+ +++P++LG + +YG GY + YDP ++ T+ + F TA
Sbjct: 266 QEARKIVGALHQIITFRDYIPKILGPEAFDQYG------GYYEGYDPTVNPTVSNVFSTA 319
Query: 185 AFRFGHSLLPKSMERWSVTNKFIASRRFSEMFQQ---------------PYDLNKPGWLD 229
AFRFGH+ + ++ RR E FQ+ P+ L + G LD
Sbjct: 320 AFRFGHATIHPTV------------RRLDENFQEHPVLPNLALHDAFFSPWRLVREGGLD 367
Query: 230 QYLVGML-NQAALPM-DDAITTQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYR 287
+ G++ A L DD + ++T LF ++ DLAS+NLQR R+HG+P Y+++R
Sbjct: 368 PVIRGLIGGPAKLVTPDDLMNEELTEKLFVL-SNSSTLDLASLNLQRGRDHGLPGYNDWR 426
Query: 288 EFCNLPPVNTWTSLLKSL-DNSTVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSC 346
EFC LP + T L ++ D + + DLY P ++D+W G++E + + GP F+C
Sbjct: 427 EFCGLPRLATPADLATAIADQAVADKILDLYKHPDNIDVWLGGLAEDFLPGARTGPLFAC 486
Query: 347 IIARTFRDLKRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNAD 394
+I + + L+ GDRFW+EN + F+ AQ +E+RK LSR++CDN
Sbjct: 487 LIGKQMKALRDGDRFWWEN---SNVFTDAQRRELRKHSLSRVICDNTG 531
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 302 bits (776), Expect = 2e-99
Identities = 153/398 (38%), Positives = 206/398 (51%), Gaps = 26/398 (6%)
Query: 5 NNKSSRVQTNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDLGLKPLLPLKTE 64
+ R Q N++T+YID + VYGS A LR + GG LK LLP
Sbjct: 43 TPDNPREQINAITAYIDGSNVYGSDEERADALRSFGGGKLKTSVANAG----DLLPFNEA 98
Query: 65 Q-PDDGCIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQL 123
P+D P DL FLAGD R NE L LHTLFVREHNR+A EL+ NP SDE++
Sbjct: 99 GLPNDNGGVPADDL--FLAGDVRANENPGLTALHTLFVREHNRLADELARRNPSLSDEEI 156
Query: 124 YQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGT 183
YQ R I+ A +Q ITYNEFLP LLG+ + Y YD ++ I + F T
Sbjct: 157 YQAARAIVIAEIQAITYNEFLPALLGENALPAY----------SGYDETVNPGISNEFST 206
Query: 184 AAFRFGHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPM 243
AA+RFGHS+L + R S + F P +L + G +D L G+ +Q A +
Sbjct: 207 AAYRFGHSMLSSELLRGDEDGTEATSLALRDAFFNPDELEENG-IDPLLRGLASQVAQEI 265
Query: 244 DDAITTQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLK 303
D I V N LF P G DLA++N+QR R+HG+PSY++ RE LP V +++ +
Sbjct: 266 DTFIVDDVRNFLFGPPG-AGGFDLAALNIQRGRDHGLPSYNQLREALGLPAVTSFSDITS 324
Query: 304 SLDNSTVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWY 363
D R +Y +DLW G++E + L+G TFS IIA F L+ GDRF+Y
Sbjct: 325 --DPDLAARLASVYGDVDQIDLWVGGLAEDHVNGGLVGETFSTIIADQFTRLRDGDRFFY 382
Query: 364 ENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQP 401
EN L ++ +I L+ ++ N D IQ
Sbjct: 383 ENDD----LLLDEIADIENTTLADVIRRNTDV-DDIQD 415
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 288 bits (740), Expect = 8e-95
Identities = 135/386 (34%), Positives = 187/386 (48%), Gaps = 21/386 (5%)
Query: 12 QTNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDLGLKPLLPLKTEQPDDGCI 71
Q N+ T Y+D + +YGS+P +A LR ++GG LK LLP
Sbjct: 1 QLNARTPYLDGSSIYGSNPDVARALRTFKGGLLKTNEVKGPSYGTELLPFN-NPNPSMGT 59
Query: 72 RPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHIL 131
CF+AGD RVNE L L +HTLF+REHNR+A L +P W DE+LYQE R I+
Sbjct: 60 IGLPPTRCFIAGDPRVNENLLLLAVHTLFLREHNRLADRLKKEHPEWDDERLYQEARLIV 119
Query: 132 AAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAFRFGHS 191
A Q ITYNE+LP +LGK T + L L DP + + S F TAA+RFGHS
Sbjct: 120 IAQYQLITYNEYLPAILGKFTDPRDDLVLLF------PDPDVVPYVLSEFFTAAYRFGHS 173
Query: 192 LLPKSMERWSVTNKFIASRR-----FSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDA 246
L+P+ ++R F + LD L G L Q A +D
Sbjct: 174 LVPEGVDRI--DENGQPKEIPDVPLKDFFFNTSRSILSDTGLDPLLRGFLRQPAGLIDQ- 230
Query: 247 ITTQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLD 306
P G DLA++N+QR R+ G+PSY+E R F L P ++ +L D
Sbjct: 231 --NVDDVMFLFGPLEGVGLDLAALNIQRGRDLGLPSYNEVRRFIGLKPPTSFQDILT--D 286
Query: 307 NSTVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWYENS 366
+ +LY P D+DLW G+ E + + +G + II F+ L GDRF+Y N
Sbjct: 287 PELAKKLAELYGDPDDVDLWVGGLLEKKVPPARLGELLATIILEQFKRLVDGDRFYYVNY 346
Query: 367 GSPSSFSLAQLQEIRKVKLSRILCDN 392
+L+++ L+ I+C N
Sbjct: 347 NPFGKSGKEELEKLI--SLADIICLN 370
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 214 bits (546), Expect = 8e-64
Identities = 125/404 (30%), Positives = 185/404 (45%), Gaps = 50/404 (12%)
Query: 10 RVQTNSLTSYIDANFVYGSSPTLAAKLREYRGGCLK-----VLPQFKDLGLKPLLPLKTE 64
R Q N +TS+ID + +YGSS + LR + GG L P+ L PL
Sbjct: 131 REQLNEVTSWIDGSSIYGSSKAWSDALRSFSGGRLASGDDGGFPRRNTNRL----PLANP 186
Query: 65 QPDDGCIRPHRDLYC---FLAGDNRVNEQ---LALGVLHTLFVREHNRIAHELSVVNPHW 118
P H F G+ R NE L G+L + R HN +A ++ +P W
Sbjct: 187 PPP----SYHGTRGPERLFKLGNPRGNENPFLLTFGIL---WFRYHNYLAQRIAREHPDW 239
Query: 119 SDEQLYQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIP 178
SDE ++QE R + A Q+I + E+LP LLG + Y Y P++D I
Sbjct: 240 SDEDIFQEARKWVIATYQNIVFYEWLPALLGT-NVPPY----------TGYKPHVDPGIS 288
Query: 179 SAFGTAAFRFGHSLLPKSMERWSVTNKFIASR---------RFSEMFQQPYDLNKPGWLD 229
F AAFRFGH+L+P + R + F R + + +D
Sbjct: 289 HEFQAAAFRFGHTLVPPGVYRRNRQCNFREVLTTSGGSPALRLCNTYWNSQEPLLKSDID 348
Query: 230 QYLVGMLNQAALPMDDAITTQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREF 289
+ L+GM +Q A D+ I + ++LF P +DL ++N+QR R+HG+P Y+ RE
Sbjct: 349 ELLLGMASQIAEREDNIIVEDLRDYLFG-PLEFSRRDLMALNIQRGRDHGLPDYNTAREA 407
Query: 290 CNLPPVNTWTSL---LKSLDNSTVHRYQDLYSF-PQDLDLWSAGVSEIPIGDSLIGPTFS 345
LPP TW+ + L D + R +LY LDL+ G+ E G F
Sbjct: 408 FGLPPRTTWSDINPDLFKKDPELLERLAELYGNDLSKLDLYVGGMLE--SKGGGPGELFR 465
Query: 346 CIIARTFRDLKRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRIL 389
II F+ L+ GDRFW+EN + F+ +++EIR L ++
Sbjct: 466 AIILDQFQRLRDGDRFWFENVKN-GLFTAEEIEEIRNTTLRDVI 508
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 570
Score = 129 bits (325), Expect = 1e-32
Identities = 104/467 (22%), Positives = 164/467 (35%), Gaps = 137/467 (29%)
Query: 12 QTNSLTSYIDANFVYGSSPTLAAKLREYRG--------------------------GCLK 45
TN T ++D N YGS + LREY G
Sbjct: 83 HTNVTTPFVDQNQTYGSHASHQVFLREYDGDGVATGRLLEGATGGSARTGHAFLDDIAHN 142
Query: 46 VLPQFKDLGLKPLLPLKTEQP------DDGCIRPHRDLYCFLAGDNRVNEQLALGVLHTL 99
P+ L+ P D+ + H F+AGD RVNE + L +HT+
Sbjct: 143 AAPKGGLGSLRDNPTEDPPGPGAPGSYDNELLDAH-----FVAGDGRVNENIGLTAVHTV 197
Query: 100 FVREHNRI----------------AHELSVVNPHWSDEQLYQETRHILAAIVQHITYNEF 143
F REHNR+ A+E N W E+L+Q R QH+ + EF
Sbjct: 198 FHREHNRLVDQIKDTLLQSADLAFANEAGGNNLAWDGERLFQAARFANEMQYQHLVFEEF 257
Query: 144 LPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAFRFGHSLLPKSMERWSVT 203
R+ + +G + Y+P I+ +I + F A +RFGHS+L +++ R
Sbjct: 258 ARRIQP---------GIDGFGSFNGYNPEINPSISAEFAHAVYRFGHSMLTETVTRIGP- 307
Query: 204 NKFIASRRFSEMFQQPYDLNKPGWLDQY----------LVGMLNQAALPMDDAITTQVTN 253
+ + LN +L L GM Q +D+ +T + N
Sbjct: 308 DADEGLDNQVGLIDAF--LNPVAFLPATLYAEEGAGAILRGMTRQVGNEIDEFVTDALRN 365
Query: 254 HLFQEPTHEYGKDLASINLQRAREHGVPSYSEYR--------EFCNLPPVNTWTSLLKSL 305
+L P DLA++N+ R R+ G+P+ +E R + P +W L
Sbjct: 366 NLVGLPL-----DLAALNIARGRDTGLPTLNEARAQLFAATGDTILKAPYESWNDFGARL 420
Query: 306 DNS--------------TVHRYQDLYSFP------------------------------- 320
N T+ L +
Sbjct: 421 KNPESLINFIAAYGTHLTITGATTLAAKRAAAQDLVDGGDGAPADRADFMNAAGAGAGTV 480
Query: 321 ---QDLDLWSAGVSEIPI-GDSLIGPTFSCIIARTFRDLKRGDRFWY 363
++DLW G++E + ++G TF+ + L+ GDRF+Y
Sbjct: 481 KGLDNVDLWVGGLAEKQVPFGGMLGSTFNFVFEEQMDRLQDGDRFYY 527
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 88.1 bits (219), Expect = 7e-19
Identities = 85/321 (26%), Positives = 129/321 (40%), Gaps = 71/321 (22%)
Query: 14 NSLTSYIDANFVYGSSPTLAAKLRE-YRGGCLKVLPQFKDLGLKPLLPLKTEQPDDGCIR 72
N+ T + D + +YGS+ +LR G LK L LLP+ G
Sbjct: 88 NTNTHWWDGSQIYGSTEEAQKRLRTFPPDGKLK-------LDADGLLPV---DEHTGLP- 136
Query: 73 PHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILA 132
L G N N + L +LHTLFVREHN I L P WSDEQL+ + R + A
Sbjct: 137 --------LTGFND-NWWVGLSLLHTLFVREHNAICDALRKEYPDWSDEQLFDKARLVNA 187
Query: 133 AIVQHITYNEFLPRLLGKQTMQK------YGL------------------------ELKH 162
A++ I E+ P +L T++ +GL H
Sbjct: 188 ALMAKIHTVEWTPAILAHPTLEIAMRANWWGLLGERLKRVLGRDGTSELLSGIPGSPPNH 247
Query: 163 YGYSDDYDPYIDATIPSAFGTAAFRFGHSLLPKSMERWSVTNKFIASR-RFSEMF--QQP 219
+G PY ++ F A +R H L+P ++ S + +++ +
Sbjct: 248 HG-----VPY---SLTEEF-VAVYRM-HPLIPDDIDFRSADDGATGEEISLTDLAGGKAR 297
Query: 220 YDLNKPGWLDQYLVGMLNQAALPMDDAITTQVTNHLFQEPTHEYGK--DLASINLQRARE 277
L K G+ D L A+T ++ G+ DLA+I++ R RE
Sbjct: 298 ELLRKLGFADL-LYSFGITHP----GALTLHNYPRFLRDLHRPDGRVIDLAAIDILRDRE 352
Query: 278 HGVPSYSEYREFCNLPPVNTW 298
GVP Y+E+R +LPP ++
Sbjct: 353 RGVPRYNEFRRLLHLPPAKSF 373
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 86.5 bits (215), Expect = 2e-18
Identities = 85/410 (20%), Positives = 146/410 (35%), Gaps = 73/410 (17%)
Query: 12 QTNSLTSYIDANFVYGSSPTLAAKLREYRGGCLK-------VLPQ--FKDLGLKPLLPLK 62
+ N+ ID + +YG + LR ++ G LK P F+D G+K P
Sbjct: 123 RRNTSNHGIDLSQIYGLTEARTHALRLFKDGKLKSQMINGEEYPPYLFEDGGVKMEFPPL 182
Query: 63 TEQPDDGCIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQ 122
D + P R+ F G R N L +L+T+++REHNR+ L +P W DE+
Sbjct: 183 VPPLGDE-LTPEREAKLFAVGHERFNLTPGLFMLNTIWLREHNRVCDILKKEHPDWDDER 241
Query: 123 LYQETRHILAAI---------VQHIT-YN---EFLPRLLGKQTMQKYGLELKHYGYSDDY 169
L+Q R+IL + H++ Y+ F P L + Q+
Sbjct: 242 LFQTARNILIGELIKIVIEDYINHLSPYHFKLFFDPELAFNEPWQR-------------- 287
Query: 170 DPYIDATIPSAFGTAAFRFGHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLD 229
I F +R+ H L+P + S+ + G L
Sbjct: 288 ----QNRIALEFNL-LYRW-HPLVPDTF-NIGGQ-----RYPLSDFLFNNDLVVDHG-LG 334
Query: 230 QYLVGMLNQAALPMDDAITTQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREF 289
+ Q A ++ ++ SI R + S+++YR+
Sbjct: 335 ALVDAASRQPA--------GRIGLRNTPPFLLPV--EVRSIEQGRKLR--LASFNDYRKR 382
Query: 290 CNLPPVNTWTSLLKSLDNSTVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIA 349
LPP ++ L + D ++LY ++ + +E P +S + P ++A
Sbjct: 383 FGLPPYTSFEEL--TGDPEVAAELEELYGDVDAVEFYVGLFAEDPRPNSPLPPLMVEMVA 440
Query: 350 -RTFRDL---KRGDRFWYENSGSPSSFSLAQLQEIRKVK-LSRILCDNAD 394
F + PS+F +I K L ++C N
Sbjct: 441 PDAFSGALTNPLLSPEVW----KPSTFGGEGGFDIVKTATLQDLVCRNVK 486
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase.
Length = 633
Score = 67.5 bits (165), Expect = 5e-12
Identities = 84/348 (24%), Positives = 138/348 (39%), Gaps = 78/348 (22%)
Query: 14 NSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDLGLKPLLPLKTEQPDDGCIRP 73
N T + D + +YGS+ ++R ++ G LK+ GL +DG
Sbjct: 208 NIRTPWWDGSVIYGSNEKGLRRVRTFKDGKLKISED----GL-------LLHDEDGIP-- 254
Query: 74 HRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAA 133
++GD R N + +L LFV+EHN + L P + DE+LY+ R + +A
Sbjct: 255 -------ISGDVR-NSWAGVSLLQALFVKEHNAVCDALKEEYPDFDDEELYRHARLVTSA 306
Query: 134 IVQHITYNEFLPRLLGKQTMQK------YGLELK-------HYGYS------------DD 168
++ I ++ LL T+ YGL K H G +
Sbjct: 307 VIAKIHTIDWTVELLKTDTLLAGMRANWYGLLGKKFKDTFGHIGGPILSGLVGLKKPNNH 366
Query: 169 YDPYIDATIPSAFGTAAFRFGHSLLP-----KSMERWSVTNKFIASRRFSEM-----FQQ 218
PY ++ F T+ +R HSLLP + + NK M +
Sbjct: 367 GVPY---SLTEEF-TSVYRM-HSLLPDHLILRDITAAPGENKSPPLIEEIPMPELIGLKG 421
Query: 219 PYDLNKPGWLDQYLVGMLNQA--ALP-------MDDAITTQVTNHLFQEPTHEYGKDLAS 269
L+K G ++ +V M +QA AL M D + + P H D+A+
Sbjct: 422 EKKLSKIG-FEKLMVSMGHQACGALELWNYPSWMRDLVPQDIDGE--DRPDH---VDMAA 475
Query: 270 INLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDNSTVHRYQDLY 317
+ + R RE GV Y+E+R + P++ W L D + +++Y
Sbjct: 476 LEIYRDRERGVARYNEFRRNLLMIPISKWEDLTD--DEEAIEVLREVY 521
>gnl|CDD|188651 cd09819, An_peroxidase_bacterial_1, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 465
Score = 64.7 bits (158), Expect = 3e-11
Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 19/215 (8%)
Query: 81 LAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQETRHILAAIVQHITY 140
L GD R +E L + LH F+R HN + L + L++E R ++ Q +
Sbjct: 145 LIGDPRNDENLIVAQLHLAFLRFHNAVVDALRAHGTPGDE--LFEEARRLVRWHYQWLVL 202
Query: 141 NEFLPRLLGKQTMQKYGLEL-KHYGYSDDYDPYIDATIPSAFGTAAFRFGHSLLPKSMER 199
N+FLPR+ + + Y + + P+ +P F AA+RFGHS++ S +
Sbjct: 203 NDFLPRICDPDVVDDVLANGRRFYRFFREGKPF----MPVEFSVAAYRFGHSMVRASYDY 258
Query: 200 WSVTNKFIASRRFSEMFQQPYDLN-----KPGW-LD-QYLVGMLNQAALPMDDAITTQVT 252
F+ DL W +D + + A I T++
Sbjct: 259 NRNFPDASLELLFTFTGGGEGDLGGFSPLPENWIIDWRRFFDIDGSAPPQFARKIDTKLA 318
Query: 253 NHLFQEPT-----HEYGKDLASINLQRAREHGVPS 282
LF P K LA NL R G+PS
Sbjct: 319 PPLFDLPNGGVGLAPPMKSLAFRNLLRGYRLGLPS 353
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase
and related enzymes. These fungal enzymes, related to
animal heme peroxidases, catalyze the oxygenation of
linoleate and similar targets. Linoleate
(8R)-dioxygenase, also called linoleate:oxygen
7S,8S-oxidoreductase, generates
(9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate as a
product. Other members are 5,8-linoleate dioxygenase
(LDS, ppoA) and linoleate 10R-dioxygenase (ppoC),
involved in the biosynthesis of oxylipins.
Length = 550
Score = 43.1 bits (102), Expect = 2e-04
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 26/123 (21%)
Query: 258 EPTHEYG--------KDLASINLQRAREHGVPSYSEYREFCNLPPVNT---WTSLLKSLD 306
+P +G K + + + +ARE V + +E+R+F L P T S D
Sbjct: 358 DPAGAFGARNVPASLKVIEILGILQAREWNVATLNEFRKFFGLKPYETFEDINS-----D 412
Query: 307 NSTVHRYQDLYSFPQDLDLWSAGVSE----IPIGDSLIGPTFSCIIART-FRD---LKRG 358
+ LY P +++L+ V+E S + P ++ I+R D L RG
Sbjct: 413 PEVAEALELLYGHPDNVELYPGLVAEDAKPPMPPGSGLCPGYT--ISRAILSDAVALVRG 470
Query: 359 DRF 361
DRF
Sbjct: 471 DRF 473
>gnl|CDD|226117 COG3589, COG3589, Uncharacterized conserved protein [Function
unknown].
Length = 360
Score = 31.6 bits (72), Expect = 0.76
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 298 WTSLLKSLDNSTVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPT 343
L + L HRY + + Q DL+ G+ ++ IGD
Sbjct: 186 RGPLYEGLPTLEAHRYVEPFV--QAKDLFKTGIDDVLIGDQFPSEE 229
>gnl|CDD|227390 COG5057, LAG1, Phosphotyrosyl phosphatase activator [Cell division
and chromosome partitioning / Signal transduction
mechanisms].
Length = 353
Score = 31.3 bits (71), Expect = 0.78
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 67 DDGCIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWS--DEQLY 124
D + + D + N +NE + LG REH+ I +++S V WS +E +
Sbjct: 227 DKELVEEYADSNLYFGAINFINE-VKLGPF-----REHSPILYDISAV-KTWSKVNEGMI 279
Query: 125 QETR-HILA--AIVQHITYNEFLP 145
+ +L+ +VQH + EFLP
Sbjct: 280 KMYDVEVLSKLPVVQHFIFGEFLP 303
>gnl|CDD|107259 cd01574, PBP1_LacI, Ligand-binding domain of DNA transcription
repressor LacI specific for lactose, a member of the
LacI-GalR family of bacterial transcription regulators.
Ligand-binding domain of DNA transcription repressor
LacI specific for lactose, a member of the LacI-GalR
family of bacterial transcription regulators. The
ligand-binding domain of LacI is structurally homologous
to the periplasmic sugar-binding domain of ABC-type
transporters and both domains contain the type I
periplasmic binding protein-like fold. The LacI-GalR
family repressors are composed of two functional
domains: an N-terminal HTH (helix-turn-helix) domain,
which is responsible for the DNA-binding specificity,
and a C-terminal ligand-binding domain, which is
homologous to the type I periplasmic binding proteins.
As also observed in the periplasmic binding proteins,
the C-terminal domain of the bacterial transcription
repressor undergoes a conformational change upon ligand
binding which in turn changes the DNA binding affinity
of the repressor.
Length = 264
Score = 29.5 bits (67), Expect = 3.1
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 88 NEQLALGVLHTLFVREHN-RIAHELSVV 114
N+Q+ALGVL L E R+ ++SVV
Sbjct: 182 NDQMALGVLRAL--HELGLRVPDDVSVV 207
>gnl|CDD|99816 cd06220, DHOD_e_trans_like2, FAD/NAD binding domain in the electron
transfer subunit of dihydroorotate dehydrogenase-like
proteins. Dihydroorotate dehydrogenases (DHODs) catalyze
the only redox reaction in pyrimidine de novo
biosynthesis. They catalyze the oxidation of
(S)-dihydroorotate to orotate coupled with the reduction
of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is
co-expressed with pyrK and both gene products are
required for full activity, as well as 3 cofactors: FMN,
FAD, and an [2Fe-2S] cluster.
Length = 233
Score = 28.8 bits (65), Expect = 4.1
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 325 LWSAGVSEIPIGDSLIGPTFSCIIAR------TFRDLKRGDRFWY 363
+W GV EIP+ S I S + + DLK GD+
Sbjct: 32 VWVPGVDEIPMSLSYIDGPNSITVKKVGEATSALHDLKEGDKLGI 76
>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 29.3 bits (66), Expect = 4.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 131 LAAIVQHITYNEFLPRLLGKQTMQK 155
LA IV+H+T EF P L +Q
Sbjct: 373 LAGIVEHVTLLEFAPELKADAVLQD 397
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 29.0 bits (66), Expect = 5.1
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 261 HEYGKDLASINLQRAREHGVP 281
H YG LA+ LQR R+ G+P
Sbjct: 138 HGYG--LAASQLQRLRDAGIP 156
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.418
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,628,048
Number of extensions: 2112791
Number of successful extensions: 1700
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1653
Number of HSP's successfully gapped: 30
Length of query: 416
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 317
Effective length of database: 6,546,556
Effective search space: 2075258252
Effective search space used: 2075258252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)