RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy722
(416 letters)
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 338 bits (867), Expect = e-111
Identities = 84/412 (20%), Positives = 144/412 (34%), Gaps = 35/412 (8%)
Query: 5 NNKSSRVQTNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDLGLKPLLPLKTE 64
++K T L +D N +YG + KLR ++ G LK G + P +
Sbjct: 182 DHKRGPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQVI----GGEVYPPTVKD 237
Query: 65 QPDDGCIRPHR-DLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQL 123
+ PH + F G L + T+++REHNR+ L +P W DEQL
Sbjct: 238 TQVEMIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQL 297
Query: 124 YQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGT 183
+Q +R IL I +++ L G K+ EL ++ A
Sbjct: 298 FQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPEL-------LFNQQFQYQNRIASEF 350
Query: 184 AAFRFGHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPM 243
H LLP + F + L + G L Q++
Sbjct: 351 NTLYHWHPLLPDTFNIED------QEYSFKQFLYNNSILLEHG-LTQFVESF-------- 395
Query: 244 DDAITTQVTNHLFQEP-THEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLL 302
T Q+ + + +A ++ ++RE S +EYR+ +L P ++ L
Sbjct: 396 ----TRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELT 451
Query: 303 KSLDNSTVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFW 362
+ + LYS ++L+ A + E P D++ G T + A G+
Sbjct: 452 G--EKEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPIC 509
Query: 363 YENSGSPSSFSL-AQLQEIRKVKLSRILCDNADDLITIQPWALEMPNDYTKR 413
PS+F + I + ++C+N + T
Sbjct: 510 SPQYWKPSTFGGEVGFKIINTASIQSLICNNVKGCPFTSFNVQDPQPTKTAT 561
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 331 bits (848), Expect = e-110
Identities = 141/413 (34%), Positives = 206/413 (49%), Gaps = 19/413 (4%)
Query: 5 NNKSSRVQTNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDLGLKPLLPLKTE 64
+N + R Q N+LTS++DA+ VYGS LA LR + + L
Sbjct: 44 SNITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDN 103
Query: 65 QPDDGCIRPHRD--LYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQ 122
DD C+ +R + CFLAGD R +E L +HTL +REHNR+A EL +NP W E+
Sbjct: 104 LHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGER 163
Query: 123 LYQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFG 182
LYQE R I+ A+VQ ITY ++LP +LG M+KY Y+ +D I + F
Sbjct: 164 LYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYL------PTYRSYNDSVDPRIANVF- 216
Query: 183 TAAFRFGHSLLPKSMERWSVTNKFIASR---RFSEMFQQPYDLNKPGWLDQYLVGMLNQA 239
T AFR+GH+L+ M R + + S +F + + G +D L G++
Sbjct: 217 TNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMATP 276
Query: 240 A--LPMDDAITTQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNT 297
A + ++ LF E G DL ++N+QR+R+HG+P Y+ +R FC LP T
Sbjct: 277 AKLNRQNQIAVDEIRERLF-EQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPET 335
Query: 298 WTSLLKSLDNSTVH-RYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLK 356
L L N + + + Y P ++D+W GVSE +GP +CII FR L+
Sbjct: 336 VGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLR 395
Query: 357 RGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPND 409
GDRFW+EN FS+ Q Q + ++ L RI+CDN + +
Sbjct: 396 DGDRFWWEN---EGVFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSY 445
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 331 bits (851), Expect = e-109
Identities = 72/399 (18%), Positives = 132/399 (33%), Gaps = 35/399 (8%)
Query: 5 NNKSSRVQTNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDLGLKPLLPLKTE 64
+ K T +L +D +YG + +LR ++ G LK ++ P E
Sbjct: 182 SGKMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEV-----YPPSVE 236
Query: 65 QPDDGCIRPHR--DLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQ 122
+ P G L + T+++REHNR+ L +P W DEQ
Sbjct: 237 EAPVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQ 296
Query: 123 LYQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFG 182
L+Q R IL I E++ +L G K+ EL +G Y I A
Sbjct: 297 LFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPEL-LFGAQFQYRNRI------AME 349
Query: 183 TAAFRFGHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALP 242
H L+P S + + L G ++ + Q A
Sbjct: 350 FNQLYHWHPLMPDSFRVGP------QDYSYEQFLFNTSMLVDYG-VEALVDAFSRQPAGR 402
Query: 243 MDDAITTQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLL 302
+ + +A ++ +R + ++EYR+ + P ++ L
Sbjct: 403 IGGG-----------RNIDHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELT 451
Query: 303 KSLDNSTVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFW 362
+ ++LY L+ + + E +S+ G + + A G+
Sbjct: 452 G--EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPIC 509
Query: 363 YENSGSPSSFSL-AQLQEIRKVKLSRILCDNADDLITIQ 400
S+F ++ L +++C N +
Sbjct: 510 SPEYWKASTFGGEVGFNLVKTATLKKLVCLNTKTCPYVS 548
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 330 bits (846), Expect = e-108
Identities = 145/408 (35%), Positives = 218/408 (53%), Gaps = 20/408 (4%)
Query: 10 RVQTNSLTSYIDANFVYGSSPTLAAKLREYRG--GCLKVLPQFKDLGLKPLLPLKTEQPD 67
R Q N++TS++DA+ VYGS P+LA++LR G + V + D GL L +
Sbjct: 177 REQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSP 236
Query: 68 DGCIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQLYQET 127
I + CFLAGD R +EQ+ L HTL +REHNR+A EL +NPHW+ E+LYQE
Sbjct: 237 CEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEA 296
Query: 128 RHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAFR 187
R IL A +Q IT+ ++LP +LG + + GY++ DP S T AFR
Sbjct: 297 RKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQ---GYNNSVDPR-----ISNVFTFAFR 348
Query: 188 FGHSLLPKSMERWSVTNKFIASR---RFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPM- 243
FGH +P ++ R + +F + + K G +D + G+L + + M
Sbjct: 349 FGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMN 408
Query: 244 -DDAITTQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLL 302
D +T+++ N LFQ +G DLA+INLQR R+HG+P Y+ +R FC L T L
Sbjct: 409 QDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQ 468
Query: 303 KSLDNSTVH-RYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRF 361
L N + + DLY P ++D+W G +E + +GP +C++ R F+ ++ GDRF
Sbjct: 469 TVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRF 528
Query: 362 WYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPND 409
W+EN P F+ Q ++KV SR++CDN + + A + N
Sbjct: 529 WWEN---PGVFTEKQRDSLQKVSFSRLICDN-THITKVPLHAFQANNY 572
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 2e-08
Identities = 43/267 (16%), Positives = 81/267 (30%), Gaps = 50/267 (18%)
Query: 100 FVREHNRIAHELSV-VNPHWSDEQLYQETRHILAAIVQHITYN-------EFLPRLLGKQ 151
H + H L V + QL ++ IL + + E + + LG
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG-- 66
Query: 152 TMQKYGLELKHYGYSDDYDPYIDATIPSAFGTAAFRFG---HSL---LPKSMERWSVTNK 205
Y L +D ++ + + F + G H+L L + + V K
Sbjct: 67 ----YVSSLVEPSKVGQFDQVLNLCL-TEF-ENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 206 FIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPMDDAITTQVTNHLF--QEPTHEY 263
+ + + +P D+ L +A + + F Q T +Y
Sbjct: 121 ELI-KNY---ITARIMAKRP--FDKKSNSALFRAVGEGNAQLVAI-----FGGQGNTDDY 169
Query: 264 GKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLKSLDNSTVHRYQDLYSFPQDL 323
++L + Y Y + L L T + +++ ++
Sbjct: 170 FEELRDL------------YQTYHVLVG-DLIKFSAETLSEL-IRTTLDAEKVFTQGLNI 215
Query: 324 DLWSAGVSEIPIGDSLIGPTFSC-IIA 349
W S P D L+ SC +I
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIG 242
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 6e-07
Identities = 64/494 (12%), Positives = 127/494 (25%), Gaps = 155/494 (31%)
Query: 38 EYRGGCLKVLPQF-----KDLGLKPLLP-----LKTEQPDDGCIRPHRD------LYCFL 81
E++ +L F + K + L E+ D + + L
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 82 AGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWS-DEQLYQETRHILAAIVQHIT- 139
+ + ++ VL + + + S ++Y E R L Q
Sbjct: 73 SKQEEMVQKFVEEVLRI----NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 140 YNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYI-------------------DATIPSA 180
YN + RL +++ LEL+ + +
Sbjct: 129 YN--VSRLQPYLKLRQALLELRP-------AKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 181 FGTAAF--RFGH----SLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVG 234
F + + + +++ + R ++ + L
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH---SIQAELRR 236
Query: 235 MLNQAALP-----MDDA----------------ITT---QVTN--------HLFQEP--- 259
+L + + +TT QVT+ H+ +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 260 --THEYGKDLASINLQRAREHGVPSYSEYREFCNLPP-------------VNTW------ 298
T + K L L R +P RE P + TW
Sbjct: 297 TLTPDEVKSLLLKYL-DCRPQDLP-----REVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 299 ------TSLLKSLDN--STVHR--YQDLYSFPQDLD--------LWSAGVSEIP--IGDS 338
T + SL+ +R + L FP +W + + +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 339 LIGPTFSCIIARTFRDLKRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLIT 398
L +S + K+ PS + +++ + L R + D+ + T
Sbjct: 411 LH--KYSLV-------EKQPKESTI---SIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 399 IQPWALEMPND--Y 410
L P Y
Sbjct: 459 FDSDDLIPPYLDQY 472
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.1 bits (95), Expect = 1e-04
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 8/32 (25%)
Query: 150 KQTMQKYGLE--LKHYGYSDDYDP--YIDATI 177
KQ ++K L+ LK Y+DD P I AT+
Sbjct: 19 KQALKK--LQASLKL--YADDSAPALAIKATM 46
Score = 31.5 bits (70), Expect = 0.28
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 8/31 (25%)
Query: 7 KSS--RVQTNSLTSYIDANFVYGSSPTLAAK 35
K + ++Q SL Y D S+P LA K
Sbjct: 19 KQALKKLQ-ASLKLYAD-----DSAPALAIK 43
Score = 28.0 bits (61), Expect = 3.7
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 17/41 (41%)
Query: 378 QEIRKVKLS-RILC-DNADDLITIQPWALEMPNDYTKRNAT 416
Q ++K++ S ++ D+A P AL + AT
Sbjct: 20 QALKKLQASLKLYADDSA-------P-ALAI-------KAT 45
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure,
rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus
horikoshii} SCOP: a.97.1.2 c.26.1.1
Length = 523
Score = 31.0 bits (69), Expect = 0.82
Identities = 33/256 (12%), Positives = 69/256 (26%), Gaps = 29/256 (11%)
Query: 117 HWSDE---QLYQETRHILAAIVQ---------HI-TYNEFLPRLLGKQTMQKYGLELKHY 163
HW+D ++ +E +V+ H+ + E + ++ G E++H
Sbjct: 3 HWADYIADKIIRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHI 62
Query: 164 GYSDDYDPY--IDATIPSAFG-------TAAFRFGHSLLPKSMERWSVTNKFIASRRFSE 214
DDYD + + +P + + + + +
Sbjct: 63 HMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEV 122
Query: 215 MFQQPYDLNKPGWLDQYLVGMLNQAALPMDDAITTQVTNHLFQEPTHEYGKDLASINLQR 274
+L K G + + + M+ I + Q P E +
Sbjct: 123 DLLYASELYKRGEYSEEIRLAFEKRDKIME--ILNKYREIAKQPPLPENWWPAMVYCPEH 180
Query: 275 AREHGVPSYSEYREFCNLPPVNTWTSLLKSLDNSTVHRYQDLYSFPQDLDLWSAGVSEIP 334
RE + + + P + N + D + GV P
Sbjct: 181 RREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDW-----PMRWSHFGVDFEP 235
Query: 335 IGDSLIGPTFSCIIAR 350
G + S +
Sbjct: 236 AGKDHLVAGSSYDTGK 251
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics; 1.70A
{Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 27.7 bits (62), Expect = 7.3
Identities = 2/33 (6%), Positives = 5/33 (15%), Gaps = 4/33 (12%)
Query: 267 LASINLQRAR----EHGVPSYSEYREFCNLPPV 295
S + + + V
Sbjct: 35 CYSRTEDKREKFGKRYNCAGDATMEALLAREDV 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.418
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,462,983
Number of extensions: 386519
Number of successful extensions: 776
Number of sequences better than 10.0: 1
Number of HSP's gapped: 749
Number of HSP's successfully gapped: 14
Length of query: 416
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 320
Effective length of database: 4,021,377
Effective search space: 1286840640
Effective search space used: 1286840640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)