RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy722
(416 letters)
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 570
Score = 350 bits (899), Expect = e-117
Identities = 147/414 (35%), Positives = 211/414 (50%), Gaps = 23/414 (5%)
Query: 6 NKSSRVQTNSLTSYIDANFVYGSSPTLAAKLREYRGG--CLKVLPQFKDLGLKPLLPLKT 63
N + R Q N+LTS++DA+ VYGS LA LR L V +F+D G + LLP
Sbjct: 149 NITIRNQINALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNG-RALLPFDN 207
Query: 64 EQPDDGCIRPHR--DLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDE 121
D C+ +R + CFLAGD R +E L +HTL +REHNR+A EL +NP W E
Sbjct: 208 LHDDP-CLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGE 266
Query: 122 QLYQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAF 181
+LYQE R I+ A+VQ ITY ++LP +LG M+KY Y+ +D I + F
Sbjct: 267 RLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYL------PTYRSYNDSVDPRIANVF 320
Query: 182 GTAAFRFGHSLLPKSMERWSVTNKFIAS---RRFSEMFQQPYDLNKPGWLDQYLVGMLNQ 238
T AFR+GH+L+ M R + + S +F + + G +D L G++
Sbjct: 321 -TNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLEGGIDPILRGLMAT 379
Query: 239 A--ALPMDDAITTQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVN 296
+ ++ LF E G DL ++N+QR+R+HG+P Y+ +R FC LP
Sbjct: 380 PAKLNRQNQIAVDEIRERLF-EQVMRIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPE 438
Query: 297 TWTSLLKSLDN-STVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDL 355
T L L N + + Y P ++D+W GVSE +GP +CII FR L
Sbjct: 439 TVGQLGTVLRNLKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKL 498
Query: 356 KRGDRFWYENSGSPSSFSLAQLQEIRKVKLSRILCDNADDLITIQPWALEMPND 409
+ GDRFW+EN G FS+ Q Q + ++ L RI+CDN + +
Sbjct: 499 RDGDRFWWENEG---VFSMQQRQALAQISLPRIICDNTGITTVSKNNIFMSNSY 549
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 511
Score = 341 bits (875), Expect = e-114
Identities = 81/395 (20%), Positives = 142/395 (35%), Gaps = 35/395 (8%)
Query: 5 NNKSSRVQTNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDLGLKPLLPLKTE 64
++K T L +D N +YG + KLR ++ G LK +G + P +
Sbjct: 141 DHKRGPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKYQV----IGGEVYPPTVKD 196
Query: 65 QPDDGCIRPH-RDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQL 123
+ PH + F G L + T+++REH R+ L +P W DEQL
Sbjct: 197 TQVEMIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQL 256
Query: 124 YQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGT 183
+Q ++ IL I +++ L G K+ EL ++ A
Sbjct: 257 FQTSKLILIGETIKIVIEDYVQHLSGYHFKLKFDPEL-------LFNQQFQYQNRIASEF 309
Query: 184 AAFRFGHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPM 243
H LLP + F + L + G L Q++
Sbjct: 310 NTLYHWHPLLPDTFNIED------QEYSFKQFLYNNSILLEHG-LTQFVESF-------- 354
Query: 244 DDAITTQVTNHLFQ-EPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLL 302
T Q+ + + +A ++ ++RE S +EYR+ +L P ++ L
Sbjct: 355 ----TRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELT 410
Query: 303 KSLDNSTVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFW 362
+ + LYS ++L+ A + E P D++ G T + A G+
Sbjct: 411 G--EKEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPIC 468
Query: 363 YENSGSPSSFSL-AQLQEIRKVKLSRILCDNADDL 396
PS+F + I + ++C+N
Sbjct: 469 SPQYWKPSTFGGEVGFKIINTASIQSLICNNVKGC 503
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
aries) [TaxId: 9940]}
Length = 511
Score = 328 bits (841), Expect = e-109
Identities = 74/400 (18%), Positives = 132/400 (33%), Gaps = 33/400 (8%)
Query: 5 NNKSSRVQTNSLTSYIDANFVYGSSPTLAAKLREYRGGCLKVLPQFKDLGLKPLLPLKTE 64
+ K T +L +D +YG + +LR ++ G LK L + P E
Sbjct: 140 SGKMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQM----LNGEVYPPSVEE 195
Query: 65 QPDD-GCIRPHRDLYCFLAGDNRVNEQLALGVLHTLFVREHNRIAHELSVVNPHWSDEQL 123
P R G L + T+++REHNR+ L +P W DEQL
Sbjct: 196 APVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQL 255
Query: 124 YQETRHILAAIVQHITYNEFLPRLLGKQTMQKYGLELKHYGYSDDYDPYIDATIPSAFGT 183
+Q R IL I E++ +L G K+ EL +G Y I A
Sbjct: 256 FQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELL-FGAQFQYRNRI------AMEF 308
Query: 184 AAFRFGHSLLPKSMERWSVTNKFIASRRFSEMFQQPYDLNKPGWLDQYLVGMLNQAALPM 243
H L+P S + + L G ++ + Q A +
Sbjct: 309 NQLYHWHPLMPDSFRVGP------QDYSYEQFLFNTSMLVDYG-VEALVDAFSRQPAGRI 361
Query: 244 DDAITTQVTNHLFQEPTHEYGKDLASINLQRAREHGVPSYSEYREFCNLPPVNTWTSLLK 303
+ +A ++ +R + ++EYR+ + P ++ L
Sbjct: 362 GGGRN-----------IDHHILHVAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTG 410
Query: 304 SLDNSTVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRDLKRGDRFWY 363
+ ++LY L+ + + E +S+ G + + A G+
Sbjct: 411 --EKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICS 468
Query: 364 ENSGSPSSF-SLAQLQEIRKVKLSRILCDNADDLITIQPW 402
S+F ++ L +++C N +
Sbjct: 469 PEYWKASTFGGEVGFNLVKTATLKKLVCLNTKTCPYVSFH 508
>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId:
11983]}
Length = 502
Score = 26.5 bits (58), Expect = 8.2
Identities = 13/114 (11%), Positives = 22/114 (19%), Gaps = 3/114 (2%)
Query: 244 DDAITTQVTNHLFQEPTHEYGKDLAS---INLQRAREHGVPSYSEYREFCNLPPVNTWTS 300
D V + + + + LP TS
Sbjct: 242 DSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTS 301
Query: 301 LLKSLDNSTVHRYQDLYSFPQDLDLWSAGVSEIPIGDSLIGPTFSCIIARTFRD 354
S+ + + D+ A GD I T +
Sbjct: 302 QWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTA 355
>d2bida_ f.1.4.1 (A:) Proapoptotic molecule Bid {Human (Homo
sapiens) [TaxId: 9606]}
Length = 197
Score = 25.6 bits (56), Expect = 9.5
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 83 GDNRVNEQLALGVL----HTLFVREHNRIAHELSVVNPHWSDE 121
D + L G L F RE + + HEL V+ P W
Sbjct: 14 RDECITNLLVFGFLQSCSDNSFRRELDALGHELPVLAPQWEGY 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.418
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,587,533
Number of extensions: 75555
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 9
Length of query: 416
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 328
Effective length of database: 1,199,356
Effective search space: 393388768
Effective search space used: 393388768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)