BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7220
(80 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 52.0 bits (123), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
K + ISF + GE FGL+G NGAGKTTT ++++ IKP+SG V ++ + VR
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 87
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 28/44 (63%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
AV+ +SF V GE LLG +G GKTTT ML G KPTSG Y
Sbjct: 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 46.2 bits (108), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 1 MLVTSLQTVD-SHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59
M VT + ++ SHL + + +N +S + GE ++G NGAGK+T ++LTG +
Sbjct: 4 MAVTPVALLEASHLH-YHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS 62
Query: 60 PTSGNAYVMNHSI 72
P+ G +++ ++
Sbjct: 63 PSHGECHLLGQNL 75
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+V +SF + GE GLLG +G+GKTT +++ G +PT G+ ++ + D
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTD 81
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
+P +KP + I+F ++G NGAGK+T +LTG + PTSG Y
Sbjct: 675 YPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 725
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTT 49
+ Y K +N+ + R +G+ G NG GK+T
Sbjct: 436 SLAYGAKILLNKTQLRLKRARRYGICGPNGCGKST 470
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
+P +KP + I+F ++G NGAGK+T +LTG + PTSG Y
Sbjct: 681 YPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
+ Y K +N+ + R +G+ G NG GK+T + +
Sbjct: 442 SLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAI 481
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
+P +KP + I+F ++G NGAGK+T +LTG + PTSG Y
Sbjct: 681 YPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTT 49
+ Y K +N+ + R +G+ G NG GK+T
Sbjct: 442 SLAYGAKILLNKTQLRLKRARRYGICGPNGCGKST 476
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
AVN+++ + GE LLG +G GKTTT +M+ G +PT G Y
Sbjct: 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
AVN+++ + GE LLG +G GKTTT +M+ G +PT G Y
Sbjct: 27 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 70
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
AV ++S V GE LLG +G GKTTT +M+ G +P+ G Y+ + + D
Sbjct: 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD 69
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
D A+ I+ + RGE +LG NG GK+T F+ G +KP+SG N I
Sbjct: 19 DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI 72
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport
Atp- Binding Protein
Length = 375
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
AV +S + GE LLG +G GKTTT + + G +PT G Y+ ++ + D
Sbjct: 21 AVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVAD 72
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 9 VDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
VD TF Y KPA++ +SF + +G+ L+G +G+GK+T + T SG+
Sbjct: 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401
Query: 67 VMNHSIRD 74
+ H +RD
Sbjct: 402 LDGHDVRD 409
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
K A+ +S + GEC + G G+GK+T +++ G I+PTSG+
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD 65
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
K A+ +S + GEC + G G+GK+T +++ G I+PTSG+
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD 63
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
A+N I+ + GE LLG +G+GK+T + G KPTSG Y
Sbjct: 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
A++ ++ + GE FG+LG +GAGKTT +++ G P++G Y
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
A++ ++ + GE FG+LG +GAGKTT +++ G P++G Y
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
P + I+F + RG+ + G GAGKT+ M+ G ++P+ G + HS R S
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGRIS 72
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
P + I+F + RG+ + G GAGKT+ M+ G ++P+ G + HS R S
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGRIS 102
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
P + I+F + RG+ + G GAGKT+ M+ G ++P+ G + HS R S
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGRIS 102
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
P + I+F + RG+ + G GAGKT+ M+ G ++P+ G + HS R S
Sbjct: 34 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGRIS 84
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
P + I+F + RG+ + G GAGKT+ M+ G ++P+ G + HS R S
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGRIS 72
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+ +GE G++G NG GKTT KML G +PT G
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 397
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60
V G G++G NG GKTT K+L G + P
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIP 129
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+ +GE G++G NG GKTT KML G +PT G
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 411
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60
V G G++G NG GKTT K+L G + P
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIP 143
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
P + I+F + RG+ + G GAGKT+ M+ G ++P+ G + HS R S
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGRIS 102
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
P + I+F + RG+ + G GAGKT+ M+ G ++P+ G + HS R S
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGRIS 102
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
P + I+F + RG+ + G GAGKT+ M+ G ++P+ G + HS R S
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGRIS 102
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
A++ +S V +G+ ++G NG+GK+T ++TG +K G Y N I +
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN 73
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
A++ +S V +G+ ++G NG+GK+T ++TG +K G Y N I +
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN 73
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
T A+N +S V G+ +G++G +GAGK+T + + +PT G+ V
Sbjct: 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLV 87
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
T A+N +S V G+ +G++G +GAGK+T + + +PT G+ V
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLV 64
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
A++ +S V +G+ ++G NG+GK+T ++TG +K G Y N I +
Sbjct: 22 ALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN 73
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+ P +N IS + GE ++G +G GKTT + L G +P SG + +I
Sbjct: 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI 68
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
Y A+ I V RG+ L+G NGAGKTTT + G ++ G
Sbjct: 16 YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+ +GE G++G NG GKTT K L G +PT G
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEG 341
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60
V G G++G NG GK+T K+L G + P
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIP 73
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 15 TFPYDTK--PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+F Y+ P + I+ + +GE +G++G GK+T ++ TSG + H+I
Sbjct: 346 SFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI 405
Query: 73 RD 74
+D
Sbjct: 406 KD 407
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
T A+N +S V G+ +G++G +GAGK+T + + +PT G+ V
Sbjct: 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLV 87
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
K + +IS+ + +G+ + L GLNGAGKTT +L TSG
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
G+ GL+G NG GK+T K+L G KP G
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLG 132
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 35 ECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
E ++G NG GKTT K+L GA+KP G
Sbjct: 379 EILVMMGENGTGKTTLIKLLAGALKPDEG 407
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
YD KP + +I+ + +G G NG GKTT K ++ +KP G
Sbjct: 20 YD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 16 FPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
F Y T+P++ +S V +G+ L+G +G GK+T ++L P +G+ ++ I
Sbjct: 1038 FNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEI 1097
Query: 73 R 73
+
Sbjct: 1098 K 1098
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 16 FPYDTKPAVN---QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
F Y ++ V ++ V G+ L+G +G GK+TT +++ P G + I
Sbjct: 395 FSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDI 454
Query: 73 R 73
R
Sbjct: 455 R 455
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 16 FPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
F Y T+P++ +S V +G+ L+G +G GK+T ++L P +G+ ++ I
Sbjct: 1038 FNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEI 1097
Query: 73 R 73
+
Sbjct: 1098 K 1098
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 16 FPYDTKPAVN---QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
F Y ++ V ++ V G+ L+G +G GK+TT +++ P G + I
Sbjct: 395 FSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDI 454
Query: 73 R 73
R
Sbjct: 455 R 455
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative
Metal-Chelate Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative
Metal-Chelate Type Abc Transporter
Length = 253
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
Q++F + +G+ +LG NG GK+T +L G +P G V
Sbjct: 23 QLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV 64
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
A+ ++ + GE ++G +G+GK+T ++ KPT G Y+ N D D
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
A+ ++ + GE ++G +G+GK+T ++ KPT G Y+ N D D
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of
Human Tap1
Length = 260
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 15 TFPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+F Y +P V ++F + GE L+G NG+GK+T +L +PT G
Sbjct: 21 SFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGG 72
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
GE +LG NG+GKTT + ++G + P SGN ++ +R + +R
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIR 75
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 37 FGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
G+LG NG GKTT K+L G I P G+
Sbjct: 28 LGVLGKNGVGKTTVLKILAGEIIPNFGD 55
Score = 32.7 bits (73), Expect = 0.058, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
GE G+LG NG GKTT ++L G I G+
Sbjct: 294 GEIIGILGPNGIGKTTFARILVGEITADEGS 324
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 34.3 bits (77), Expect = 0.017, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 16 FPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
F Y +P V S + G L+G +G+GK+T +L P SG + H I
Sbjct: 380 FAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDI 439
Query: 73 R 73
R
Sbjct: 440 R 440
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 16 FPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
F Y +P V S + G L+G +G+GK+T +L P SG + H I
Sbjct: 349 FAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDI 408
Query: 73 R 73
R
Sbjct: 409 R 409
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
Length = 241
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
D+ ++ I+ + +GE G++G +G+GK+T K++ P +G + H +
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 67
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
D+ ++ I+ + +GE G++G +G+GK+T K++ P +G + H +
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 67
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
D+ ++ I+ + +GE G++G +G+GK+T K++ P +G + H +
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 69
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
Length = 247
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
D+ ++ I+ + +GE G++G +G+GK+T K++ P +G + H +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 73
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
D+ ++ I+ + +GE G++G +G+GK+T K++ P +G + H +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 73
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
Length = 247
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
D+ ++ I+ + +GE G++G +G+GK+T K++ P +G + H +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 73
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
A+ ++ + GE + G +G+GK+T ++ KPT G Y+ N D D
Sbjct: 20 ALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 33.5 bits (75), Expect = 0.034, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
+T P ++ ++F V G +LG G+GK+T ++ I P G V +R
Sbjct: 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR 408
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding
Protein Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding
Protein Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding
Protein Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding
Protein Moda
Length = 240
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
+ F +GR C LLG GAGK+ +++ G +KP G
Sbjct: 18 VDFEMGRDYCV-LLGPTGAGKSVFLELIAGIVKPDRGE 54
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 33.1 bits (74), Expect = 0.038, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
D+ ++ I+ + +GE G++G G+GK+T K++ P +G + H +
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDL 69
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
T+P PA+ I+ + G+ L+G +G+GK+T ++T G + H +R+
Sbjct: 350 TYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLRE 409
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 32.7 bits (73), Expect = 0.050, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+++ +S V GE F +LG GAGKT +++ G P SG + + D
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD 66
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 32.7 bits (73), Expect = 0.057, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
T+P PA+ I+ + G+ L+G +G+GK+T ++T G+ + H +R+
Sbjct: 350 TYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE 409
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 32.7 bits (73), Expect = 0.058, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
P + I+ + +GE + G G+GKT+ ++ G ++ + G ++ HS R S
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGRVS 102
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 32.3 bits (72), Expect = 0.064, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
P + I+ + +GE + G G+GKT+ ++ G ++ + G ++ HS R S
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGRVS 102
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 32.3 bits (72), Expect = 0.064, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
P + I+ + +GE + G G+GKT+ ++ G ++ + G ++ HS R S
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGRVS 102
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 32.3 bits (72), Expect = 0.064, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
P + I+ + +GE + G G+GKT+ ++ G ++ + G ++ HS R S
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGRVS 102
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 32.3 bits (72), Expect = 0.066, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
P + I+ + +GE + G G+GKT+ ++ G ++ + G ++ HS R S
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGRVS 102
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 32.3 bits (72), Expect = 0.072, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 16 FPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
F YD K P + I+F + G+ L+G G+GKTT +L
Sbjct: 362 FSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL 401
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
Length = 250
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
D + + ++ V +GE L+G NGAGK+T K+L G
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 16 FPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
F Y D + + +SF V G+ L+G +GAGK+T ++L
Sbjct: 61 FSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter
(Malk) In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter
(Malk) In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
I+ + GE +G +G GK+T +M+ G TSG+ ++ + D+
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT 70
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
I+ + GE +G +G GK+T +M+ G TSG+ ++ + D+
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT 70
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
I+ + GE +G +G GK+T +M+ G TSG+ ++ + D+
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT 70
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 15 TFPYDTKPAVNQI---SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
+F Y P V + +F + G+ L+G NG+GK+T +L +PT G
Sbjct: 23 SFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 15 TFPYDTKPAVNQI---SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
+F Y P V + +F + G+ L+G NG+GK+T +L +PT G
Sbjct: 23 SFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 15 TFPYDTKPAVNQI---SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
+F Y P V + +F + G+ L+G NG+GK+T +L +PT G
Sbjct: 23 SFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From
Aquifex Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From
Aquifex Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex
(Aq_297) From Aquifex Aeolicus Vf5
Length = 224
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
IS V +GE ++G +G+GK+T +L PT G ++ +
Sbjct: 23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV 68
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN--- 64
TV + T+ P +N I+F + G ++G G GK++ L + G+
Sbjct: 5 TVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAI 64
Query: 65 ----------AYVMNHSIRDSM 76
A++ N S+R+++
Sbjct: 65 KGSVAYVPQQAWIQNDSLRENI 86
>pdb|2WZF|A Chain A, Legionella Pneumophila Glucosyltransferase Crystal
Structure
Length = 525
Score = 29.3 bits (64), Expect = 0.55, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGK-TTTFKMLTGAIKPTS 62
+D E + KP V +IS G G + LG GAG TTT + LTG + PT+
Sbjct: 429 IDIAKEHYSAFYKPLVEEIS---GPGAIYNALG--GAGSFTTTHRRLTGPMLPTT 478
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 29.3 bits (64), Expect = 0.55, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 16 FPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
F YD ++ + ISF G +G GK+T F +L +PT+G
Sbjct: 9 FAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG 57
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58
+F Y+ + ++ G+ + ++G NG+GKTT K+L G +
Sbjct: 18 SFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL 61
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 28.5 bits (62), Expect = 1.00, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 24 VNQISFGVGRGECFGLLGLNGAGKTT 49
+ ISF + G+ GLLG G+GK+T
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKST 62
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 16 FPYDTKPAVN---QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
F Y +P + +SF V G+ L+G +G GK+T +L G ++ I
Sbjct: 1084 FAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEI 1143
Query: 73 R 73
+
Sbjct: 1144 K 1144
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 26 QISFGVGRGECFGLLGLNGAGKTTTF 51
+I F R F L+G+NG GKTT+
Sbjct: 97 RIDFKENRLNIFMLVGVNGTGKTTSL 122
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gdp
Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gdp
Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gmppnp
Binding State
Length = 267
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 38 GLLGLNGAGKTTTFKMLTGA 57
GL+G +GKTT F LTGA
Sbjct: 7 GLIGNPNSGKTTLFNQLTGA 26
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
Length = 189
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTTFKMLTGA----IKPTSG 63
LLGL+ AGKTT K L I PT G
Sbjct: 22 LLGLDNAGKTTLLKQLASEDISHITPTQG 50
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTTFKMLTGA----IKPTSG 63
LLGL+ AGKTT K L I PT G
Sbjct: 21 LLGLDNAGKTTLLKQLASEDISHITPTQG 49
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
+ K + +S V GE ++G NG+GK+T L G
Sbjct: 12 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 49
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTTFKMLTGA----IKPTSG 63
LLGL+ AGKTT K L I PT G
Sbjct: 9 LLGLDNAGKTTLLKQLASEDISHITPTQG 37
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTTFKMLTGA----IKPTSG 63
LLGL+ AGKTT K L I PT G
Sbjct: 9 LLGLDNAGKTTLLKQLASEDISHITPTQG 37
>pdb|3TKT|A Chain A, Crystal Structure Of Cyp108d1 From Novosphingobium
Aromaticivorans Dsm12444
Length = 450
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 20 TKPAVNQISFGVGRGECFGL 39
T+PA ++FG G +C GL
Sbjct: 383 TRPANRHLAFGAGSHQCLGL 402
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
+ K + +S V GE ++G NG+GK+T L G
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 39 LLGLNGAGKTTTFKMLTGA----IKPTSG-NAYVMNH 70
+LGL+ AGKTT K G I PT G N + H
Sbjct: 6 MLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH 42
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59
++ G R ++G+NG GKTTT L K
Sbjct: 108 ELQLGNSRPAVLMIVGVNGGGKTTTLGKLANRFK 141
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 39 LLGLNGAGKTTTFKMLTGA----IKPTSG-NAYVMNH 70
+LGL+ AGKTT K G I PT G N + H
Sbjct: 23 MLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH 59
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 39 LLGLNGAGKTTTFKMLTGA----IKPTSG-NAYVMNH 70
+LGL+ AGKTT K G I PT G N + H
Sbjct: 23 MLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH 59
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 39 LLGLNGAGKTTTFKMLTGA----IKPTSG-NAYVMNH 70
+LGL+ AGKTT K G I PT G N + H
Sbjct: 21 MLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEH 57
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
+S V GE L+G NGAGK+T + G TSG +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGKGSI 56
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
Length = 270
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 38 GLLGLNGAGKTTTFKMLTGA 57
GL+G +GKTT F LTG+
Sbjct: 7 GLIGNPNSGKTTLFNQLTGS 26
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTT-FKMLTGAI---KPTSG 63
+LGL+GAGKTT +++ G + KPT G
Sbjct: 23 ILGLDGAGKTTILYRLQIGEVVTTKPTIG 51
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
+S V GE L+G NGAGK+T + G TSG +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGKGSI 56
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 38 GLLGLNGAGKTTTFKMLTGA 57
GL+G +GKTT F LTG+
Sbjct: 7 GLIGNPNSGKTTLFNQLTGS 26
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 38 GLLGLNGAGKTTTFKMLTGA 57
GL+G +GKTT F LTG+
Sbjct: 7 GLIGNPNSGKTTLFNQLTGS 26
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
LQ +D H + + + I+ + GE ++G +G+GK+T + L
Sbjct: 1 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL 49
>pdb|3LCI|A Chain A, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|B Chain B, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|C Chain C, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|D Chain D, The D-Sialic Acid Aldolase Mutant V251w
Length = 319
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 56 GAIKPTSGNAYVMNHSIRDSMDLV 79
GA+K TSG+ Y M R+ DLV
Sbjct: 184 GALKQTSGDLYQMEQIRREHPDLV 207
>pdb|2WO5|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2YGY|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
Length = 304
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 56 GAIKPTSGNAYVMNHSIRDSMDLV 79
GA+K TSG+ Y M R+ DLV
Sbjct: 169 GALKQTSGDLYQMEQIRREHPDLV 192
>pdb|1HL2|A Chain A, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
pdb|1HL2|B Chain B, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
pdb|1HL2|C Chain C, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
pdb|1HL2|D Chain D, Crystal Structure Of N-Acetylneuraminate Lyase From E.
Coli Mutant L142r In Complex With B-Hydroxypyruvate
Length = 297
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 56 GAIKPTSGNAYVMNHSIRDSMDLV 79
GA+K TSG+ Y M R+ DLV
Sbjct: 162 GALKQTSGDLYQMEQIRREHPDLV 185
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
LQ +D H + + + I+ + GE ++G +G+GK+T + L
Sbjct: 22 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL 70
>pdb|3LCH|A Chain A, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|B Chain B, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|C Chain C, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|D Chain D, The D-Sialic Acid Aldolase Mutant V251r
Length = 319
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 56 GAIKPTSGNAYVMNHSIRDSMDLV 79
GA+K TSG+ Y M R+ DLV
Sbjct: 184 GALKQTSGDLYQMEQIRREHPDLV 207
>pdb|3LCG|A Chain A, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|B Chain B, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|C Chain C, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|D Chain D, The D-Sialic Acid Aldolase Mutant V251l
Length = 319
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 56 GAIKPTSGNAYVMNHSIRDSMDLV 79
GA+K TSG+ Y M R+ DLV
Sbjct: 184 GALKQTSGDLYQMEQIRREHPDLV 207
>pdb|3LCF|A Chain A, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|B Chain B, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|C Chain C, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|D Chain D, The D-Sialic Acid Aldolase Mutant V251i
Length = 319
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 56 GAIKPTSGNAYVMNHSIRDSMDLV 79
GA+K TSG+ Y M R+ DLV
Sbjct: 184 GALKQTSGDLYQMEQIRREHPDLV 207
>pdb|3LBC|A Chain A, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|B Chain B, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|C Chain C, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|D Chain D, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBM|A Chain A, D-Sialic Acid Aldolase
pdb|3LBM|B Chain B, D-Sialic Acid Aldolase
pdb|3LBM|C Chain C, D-Sialic Acid Aldolase
pdb|3LBM|D Chain D, D-Sialic Acid Aldolase
Length = 319
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 56 GAIKPTSGNAYVMNHSIRDSMDLV 79
GA+K TSG+ Y M R+ DLV
Sbjct: 184 GALKQTSGDLYQMEQIRREHPDLV 207
>pdb|2WNQ|A Chain A, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|B Chain B, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|C Chain C, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|D Chain D, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
Length = 304
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 56 GAIKPTSGNAYVMNHSIRDSMDLV 79
GA+K TSG+ Y M R+ DLV
Sbjct: 169 GALKQTSGDLYQMEQIRREHPDLV 192
>pdb|3LCW|A Chain A, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCW|B Chain B, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCW|C Chain C, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCW|D Chain D, L-Kdo Aldolase Complexed With Hydroxypyruvate
pdb|3LCX|A Chain A, L-Kdo Aldolase
pdb|3LCX|B Chain B, L-Kdo Aldolase
pdb|3LCX|C Chain C, L-Kdo Aldolase
pdb|3LCX|D Chain D, L-Kdo Aldolase
Length = 319
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 56 GAIKPTSGNAYVMNHSIRDSMDLV 79
GA+K TSG+ Y M R+ DLV
Sbjct: 184 GALKQTSGDLYQMEQIRREHPDLV 207
>pdb|3LCL|A Chain A, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|B Chain B, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|C Chain C, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|D Chain D, The D-Sialic Acid Aldolase Mutant V251iV265I
Length = 319
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 56 GAIKPTSGNAYVMNHSIRDSMDLV 79
GA+K TSG+ Y M R+ DLV
Sbjct: 184 GALKQTSGDLYQMEQIRREHPDLV 207
>pdb|1NAL|1 Chain 1, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|2 Chain 2, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|3 Chain 3, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|4 Chain 4, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
Length = 297
Score = 25.0 bits (53), Expect = 9.7, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 56 GAIKPTSGNAYVMNHSIRDSMDLV 79
GA+K TSG+ Y M R+ DLV
Sbjct: 162 GALKQTSGDLYQMEQIRREHPDLV 185
>pdb|1FDZ|A Chain A, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|B Chain B, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|C Chain C, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|D Chain D, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDY|A Chain A, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|B Chain B, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|C Chain C, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|D Chain D, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
Length = 297
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 56 GAIKPTSGNAYVMNHSIRDSMDLV 79
GA+K TSG+ Y M R+ DLV
Sbjct: 162 GALKQTSGDLYQMEQIRREHPDLV 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,339,033
Number of Sequences: 62578
Number of extensions: 80766
Number of successful extensions: 427
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 134
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)