BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7220
(80 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99758|ABCA3_HUMAN ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3
PE=1 SV=2
Length = 1704
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/58 (60%), Positives = 42/58 (72%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
AV+++S V +GECFGLLG NGAGKTTTFKMLTG TSG+A+V H I + VR
Sbjct: 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVR 1455
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
+ AV ++ + G+ LLG NGAGKTTT MLTG PTSG AY+ + I M +R
Sbjct: 546 RAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIR 605
>sp|Q8R420|ABCA3_MOUSE ATP-binding cassette sub-family A member 3 OS=Mus musculus GN=Abca3
PE=2 SV=3
Length = 1704
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 18 YDTKP---AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
YD + AV++IS V +GECFGLLG NGAGKTTTFKMLTG TSG+A+V +SI
Sbjct: 1390 YDQRAPLLAVDRISLAVQKGECFGLLGFNGAGKTTTFKMLTGEETITSGDAFVGGYSISS 1449
Query: 75 SMDLVR 80
+ VR
Sbjct: 1450 DIGKVR 1455
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
K + ++ + G+ LLG NGAGKTTT +LTG PTSG+AY+ + I M +R
Sbjct: 546 KMGIRDLTLNLYEGQITVLLGHNGAGKTTTMSLLTGLFPPTSGHAYIHGYEISQDMAQIR 605
>sp|Q86UK0|ABCAC_HUMAN ATP-binding cassette sub-family A member 12 OS=Homo sapiens GN=ABCA12
PE=1 SV=3
Length = 2595
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 38/49 (77%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
AVN IS G+ GECFGLLG+NGAGKTT FKMLTG I P+SGN + N +
Sbjct: 2272 AVNNISIGIPAGECFGLLGVNGAGKTTIFKMLTGDIIPSSGNILIRNKT 2320
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
Y +K AV+ ++ G LLG NGAGKTTT MLTG ++G +V I+ +
Sbjct: 1355 YGSKVAVDNLNLNFYEGHITSLLGPNGAGKTTTISMLTGLFGASAGTIFVYGKDIKTDLH 1414
Query: 78 LVR 80
VR
Sbjct: 1415 TVR 1417
>sp|P78363|ABCA4_HUMAN Retinal-specific ATP-binding cassette transporter OS=Homo sapiens
GN=ABCA4 PE=1 SV=3
Length = 2273
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 43/59 (72%)
Query: 14 ETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+ +P + PAV+++ GV GECFGLLG+NGAGKTTTFKMLTG TSG+A V SI
Sbjct: 1945 KIYPGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI 2003
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
+PAV++++ + LG NGAGKTTT +LTG + PTSG V I S+D VR
Sbjct: 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGRDIETSLDAVR 1002
>sp|P41233|ABCA1_MOUSE ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1
PE=1 SV=4
Length = 2261
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 41/52 (78%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
KPAV++I G+ GECFGLLG+NGAGK+TTFKMLTG T G+A++ +SI
Sbjct: 1926 KPAVDRICIGIPPGECFGLLGVNGAGKSTTFKMLTGDTPVTRGDAFLNKNSI 1977
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
K AV+ ++ G+ LG NGAGKTTT +LTG PTSG AY++ IR M +R
Sbjct: 913 KVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSSIR 972
>sp|Q86UQ4|ABCAD_HUMAN ATP-binding cassette sub-family A member 13 OS=Homo sapiens GN=ABCA13
PE=2 SV=3
Length = 5058
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65
L + H F + AV IS G+ +GECFGLLG+NGAGK+TTFKML G + TSG+A
Sbjct: 4720 LYNLSKHYRRF-FQNIIAVQDISLGIPKGECFGLLGVNGAGKSTTFKMLNGEVSLTSGHA 4778
Query: 66 YVMNHSIRDSMDL 78
++ + D++DL
Sbjct: 4779 -IIRTPMGDAVDL 4790
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
K V +S R + LLG NGAGKTT MLTG PTSG + +++ + VR
Sbjct: 3855 KAVVQDLSLTFYRDQITALLGTNGAGKTTIISMLTGLHPPTSGTIIINGKNLQTDLSRVR 3914
>sp|O35600|ABCA4_MOUSE Retinal-specific ATP-binding cassette transporter OS=Mus musculus
GN=Abca4 PE=2 SV=1
Length = 2310
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 42/57 (73%)
Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 76
+ PAV+++ GV GECFGLLG+NGAGKTTTFKMLTG TSG+A V SI S+
Sbjct: 1950 SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTSI 2006
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68
V + ++ F +PAV++++ + LG NGAGKTTT +LTG + PTSG +
Sbjct: 931 VKNLVKVFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLIG 990
Query: 69 NHSIRDSMDLVR 80
I ++D+VR
Sbjct: 991 GKDIETNLDVVR 1002
>sp|Q91V24|ABCA7_MOUSE ATP-binding cassette sub-family A member 7 OS=Mus musculus GN=Abca7
PE=1 SV=1
Length = 2159
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/51 (54%), Positives = 40/51 (78%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
PAV+++ G+ GECFGLLG+NGAGKT+TF+M+TG P+SG A + H++
Sbjct: 1822 PAVDRLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV 1872
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 5 SLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
S++ + H P +PA+ ++ G LG NGAGKTTT +L+G P+SG+
Sbjct: 805 SIRGLKKHFRGCP---QPALQGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGS 861
Query: 65 AYVMNHSIRDSMDLVR 80
A ++ H ++ +M +R
Sbjct: 862 ASILGHDVQTNMAAIR 877
>sp|Q7TNJ2|ABCA7_RAT ATP-binding cassette sub-family A member 7 OS=Rattus norvegicus
GN=Abca7 PE=1 SV=1
Length = 2170
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/51 (54%), Positives = 39/51 (76%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
PAV+ + G+ GECFGLLG+NGAGKT+TF+M+TG P+SG A + H++
Sbjct: 1833 PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV 1883
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 5 SLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
S++ + H P +PA+ ++ G LG NGAGKTTT +L+G P+SG+
Sbjct: 806 SIRGLKKHFRGSP---QPALRGLNLDFYEGHITAFLGHNGAGKTTTLSILSGLFPPSSGS 862
Query: 65 AYVMNHSIRDSMDLVR 80
A ++ H ++ +M +R
Sbjct: 863 ASILGHDVQTNMAAIR 878
>sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1
PE=1 SV=3
Length = 2261
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 41/52 (78%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
KPAV++I G+ GECFGLLG+NGAGK++TFKMLTG T G+A++ +SI
Sbjct: 1926 KPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTRGDAFLNKNSI 1977
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
K AV+ ++ G+ LG NGAGKTTT +LTG PTSG AY++ IR M +R
Sbjct: 913 KVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSTIR 972
>sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2
PE=1 SV=3
Length = 2435
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
AV+++ GV GECFGLLG+NGAGKT+TFKMLTG T G A+V HS+
Sbjct: 2069 AVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSV 2118
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68
VD + + D K A+N++S + + LG NGAGKTTT +LTG PTSG+A +
Sbjct: 992 VDKLTKVYKDDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIY 1051
Query: 69 NHSIRDSMDLVR 80
H IR MD +R
Sbjct: 1052 GHDIRTEMDEIR 1063
>sp|P41234|ABCA2_MOUSE ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2
PE=1 SV=4
Length = 2434
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
AV+++ GV GECFGLLG+NGAGKT+TFKMLTG T G A+V HS+
Sbjct: 2070 AVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSV 2119
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68
VD + + D K A+N++S + + LG NGAGKTTT +LTG PTSG+A +
Sbjct: 992 VDKLTKVYKNDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIY 1051
Query: 69 NHSIRDSMDLVR 80
H IR MD +R
Sbjct: 1052 GHDIRTEMDEIR 1063
>sp|Q9ESR9|ABCA2_RAT ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus
GN=Abca2 PE=1 SV=1
Length = 2434
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
AV+++ GV GECFGLLG+NGAGKT+TFKMLTG T G A+V HS+
Sbjct: 2070 AVDRLCLGVRPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSV 2119
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68
VD + + D K A+N++S + + LG NGAGKTTT +LTG PTSG+A +
Sbjct: 992 VDKLTKVYKNDKKLALNKLSLNLYENQVVSFLGHNGAGKTTTMSILTGLFPPTSGSATIY 1051
Query: 69 NHSIRDSMDLVR 80
H IR MD +R
Sbjct: 1052 GHDIRTEMDEIR 1063
>sp|Q8IZY2|ABCA7_HUMAN ATP-binding cassette sub-family A member 7 OS=Homo sapiens GN=ABCA7
PE=1 SV=3
Length = 2146
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
PAV+++ G+ GECFGLLG+NGAGKT+TF+M+TG + G A + HS+
Sbjct: 1808 PAVDRLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLASRGEAVLAGHSV 1858
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
+V S + FP +PA+ +S +G LG NGAGKTTT +L+G P+ G+A++
Sbjct: 808 SVRSLEKRFPGSPQPALRGLSLDFYQGHITAFLGHNGAGKTTTLSILSGLFPPSGGSAFI 867
Query: 68 MNHSIRDSMDLVR 80
+ H +R SM +R
Sbjct: 868 LGHDVRSSMAAIR 880
>sp|Q5SSE9|ABCAD_MOUSE ATP-binding cassette sub-family A member 13 OS=Mus musculus GN=Abca13
PE=2 SV=1
Length = 5034
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/41 (68%), Positives = 34/41 (82%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
AV+ IS G+ RGECFGLLG+NGAGK+TTFK+L G P+SG
Sbjct: 4711 AVHGISLGIPRGECFGLLGVNGAGKSTTFKILNGETPPSSG 4751
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 78
D K AV +++ R + LLG NGAGKTT ML G PTSG + +++ +
Sbjct: 3821 DHKVAVQELTLTFHRDQITALLGTNGAGKTTIISMLMGLFPPTSGTITINGKNLQTDLSK 3880
Query: 79 VR 80
VR
Sbjct: 3881 VR 3882
>sp|P0A9U2|YBHF_SHIFL Uncharacterized ABC transporter ATP-binding protein YbhF
OS=Shigella flexneri GN=ybhF PE=3 SV=1
Length = 578
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 39/53 (73%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
A + ++F V RGE FGLLG NGAGK+TTFKM+ G + PTSG A V+ +++S
Sbjct: 344 ATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMDLKES 396
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68
FP KPAV + + G GL+G +GAGKTT +ML G +KP SG+A V+
Sbjct: 15 FPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSGSATVI 67
>sp|P0A9U1|YBHF_ECOLI Uncharacterized ABC transporter ATP-binding protein YbhF
OS=Escherichia coli (strain K12) GN=ybhF PE=1 SV=1
Length = 578
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 39/53 (73%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
A + ++F V RGE FGLLG NGAGK+TTFKM+ G + PTSG A V+ +++S
Sbjct: 344 ATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMDLKES 396
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68
FP KPAV + + G GL+G +GAGKTT +ML G +KP SG+A V+
Sbjct: 15 FPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSGSATVI 67
>sp|Q54DT1|ABCA9_DICDI ABC transporter A family member 9 OS=Dictyostelium discoideum
GN=abcA9 PE=3 SV=1
Length = 845
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/57 (54%), Positives = 36/57 (63%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
KP+V+ + V +GE G LG NGAGKTTT MLTG PTSG A+V IR MD
Sbjct: 545 KPSVDNLYLSVRKGEVLGFLGANGAGKTTTISMLTGLYTPTSGTAHVAGLDIRYDMD 601
>sp|Q1PEH6|AB3A_ARATH ABC transporter A family member 3 OS=Arabidopsis thaliana GN=ABCA3
PE=2 SV=3
Length = 932
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 38/59 (64%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV 79
K AV +S V GECFG+LG NGAGKT+ M+TG +KPTSG A+V I MD V
Sbjct: 628 KKAVRVLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPTSGAAFVQGLDICKDMDRV 686
>sp|Q84M24|AB1A_ARATH ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1
PE=2 SV=2
Length = 1882
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 37/60 (61%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
K AV ++F V GECFG LG NGAGKTTT ML+G PTSG A++ I S +R
Sbjct: 1471 KVAVQSLTFSVQAGECFGFLGTNGAGKTTTLSMLSGEETPTSGTAFIFGKDIVASPKAIR 1530
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
AVN + + + LLG NGAGK+TT ML G + PTSG+A ++ +SI +MD +R
Sbjct: 567 AVNSLQLTLYENQILSLLGHNGAGKSTTISMLVGLLPPTSGDALILGNSIITNMDEIR 624
>sp|Q9STT7|AB5A_ARATH ABC transporter A family member 5 OS=Arabidopsis thaliana GN=ABCA5
PE=3 SV=2
Length = 936
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 39/59 (66%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV 79
K AV +S V GECFG+LG NGAGKT+ M+TG +KPTSG A+V I MD+V
Sbjct: 632 KMAVRGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLMKPTSGAAFVHGLDICKDMDIV 690
>sp|Q8T6J0|ABCA7_DICDI ABC transporter A family member 7 OS=Dictyostelium discoideum
GN=abcA7 PE=3 SV=1
Length = 839
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 14 ETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
+ FP KPA++ + V +GE G LG NGAGKTT+ +LTG PTSG A++ IR
Sbjct: 532 KQFPGRPKPALSNLYLSVKKGEVLGYLGPNGAGKTTSISILTGLYTPTSGTAHIAGLDIR 591
Query: 74 DSMDLV 79
MD +
Sbjct: 592 YDMDKI 597
>sp|Q8LPK0|AB8A_ARATH ABC transporter A family member 8 OS=Arabidopsis thaliana GN=ABCA8
PE=2 SV=3
Length = 901
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 39/59 (66%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV 79
K AV +S + +GECFG+LG NGAGKT+ M+TG IKP+SG A+V I MD +
Sbjct: 604 KLAVRGLSLALPQGECFGMLGPNGAGKTSFINMMTGIIKPSSGTAFVQGLDILTDMDRI 662
>sp|Q9STT5|AB7A_ARATH ABC transporter A family member 7 OS=Arabidopsis thaliana GN=ABCA7
PE=1 SV=2
Length = 935
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 38/59 (64%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV 79
K AV +S V GECFG+LG NGAGKT+ M+TG +KPTSG A V I + MD V
Sbjct: 631 KLAVRGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLLKPTSGTALVQGLDICNDMDRV 689
>sp|P26050|NODI_BRAJA Nod factor export ATP-binding protein I OS=Bradyrhizobium
japonicum (strain USDA 110) GN=nodI PE=3 SV=2
Length = 306
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 35/55 (63%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+ K VN +SF V RGECFGLLG NGAGK+T +ML G I P G V++ +
Sbjct: 17 FGDKVIVNDLSFSVARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLDEPV 71
>sp|Q9STT6|AB6A_ARATH ABC transporter A family member 6 OS=Arabidopsis thaliana GN=ABCA6
PE=3 SV=2
Length = 926
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV 79
K AV +S V GECFG+LG NGAGKT+ M+TG +KP+SG+A+V I MD V
Sbjct: 628 KLAVCGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLVKPSSGSAFVQGLDICKDMDKV 686
>sp|Q63TX3|NODI_BURPS Nod factor export ATP-binding protein I OS=Burkholderia
pseudomallei (strain K96243) GN=nodI PE=3 SV=2
Length = 304
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/47 (61%), Positives = 33/47 (70%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
YD K V+ +SF V GECFGLLG NGAGKTTT KML G P +G+
Sbjct: 15 YDDKLVVDGLSFHVQPGECFGLLGPNGAGKTTTLKMLLGITHPDAGS 61
>sp|Q3JSQ0|NODI_BURP1 Nod factor export ATP-binding protein I OS=Burkholderia
pseudomallei (strain 1710b) GN=nodI PE=3 SV=2
Length = 304
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/47 (61%), Positives = 33/47 (70%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
YD K V+ +SF V GECFGLLG NGAGKTTT KML G P +G+
Sbjct: 15 YDDKLVVDGLSFHVQPGECFGLLGPNGAGKTTTLKMLLGITHPDAGS 61
>sp|Q62K72|NODI_BURMA Nod factor export ATP-binding protein I OS=Burkholderia mallei
(strain ATCC 23344) GN=nodI PE=3 SV=2
Length = 304
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/47 (61%), Positives = 33/47 (70%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
YD K V+ +SF V GECFGLLG NGAGKTTT KML G P +G+
Sbjct: 15 YDDKLVVDGLSFHVQPGECFGLLGPNGAGKTTTLKMLLGITHPDAGS 61
>sp|Q9STT8|AB4A_ARATH ABC transporter A family member 4 OS=Arabidopsis thaliana GN=ABCA4
PE=3 SV=2
Length = 937
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 38/59 (64%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV 79
K AV +S V GECFG+LG NGAGKT+ M+TG +KPTSG A V + I MD V
Sbjct: 633 KMAVGGLSIAVPPGECFGMLGPNGAGKTSFINMMTGLVKPTSGTALVESLDICQDMDKV 691
>sp|Q9Z3I3|NODI_BRASS Nod factor export ATP-binding protein I OS=Bradyrhizobium sp.
(strain SNU001) GN=nodI PE=3 SV=1
Length = 305
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 35/55 (63%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+ K VN +SF V RGECFGLLG NGAGK+T +ML G I P G V++ +
Sbjct: 17 FGDKVIVNDLSFSVARGECFGLLGPNGAGKSTIARMLLGMIWPDRGKITVLDEPV 71
>sp|P50332|NODI_RHIGA Nod factor export ATP-binding protein I OS=Rhizobium galegae
GN=nodI PE=3 SV=1
Length = 347
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68
+D T Y K V+ +SFGV GECFGLLG NGAGK+T +ML G P++G V+
Sbjct: 49 IDLQAVTMIYRDKTVVDSLSFGVRAGECFGLLGPNGAGKSTITRMLLGMATPSAGKISVL 108
Query: 69 NHSIRDSMDLVR 80
+ L R
Sbjct: 109 GLPVPGKARLAR 120
>sp|O52618|NODI_RHIME Nod factor export ATP-binding protein I OS=Rhizobium meliloti
(strain 1021) GN=nodI PE=3 SV=3
Length = 335
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 39/72 (54%)
Query: 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68
+D T Y KP +N +SF V GECFGLLG NGAGK+T +M+ G P +G V+
Sbjct: 37 IDVASVTKSYGDKPVINGLSFTVAAGECFGLLGPNGAGKSTITRMILGMTTPGTGEITVL 96
Query: 69 NHSIRDSMDLVR 80
+ L R
Sbjct: 97 GVPVPSRARLAR 108
>sp|Q2SVP3|NODI_BURTA Nod factor export ATP-binding protein I OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=nodI PE=3 SV=2
Length = 304
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/47 (59%), Positives = 32/47 (68%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
YD K V+ +SF V GECFGLLG NGAGKTT KML G P +G+
Sbjct: 15 YDDKLVVDGLSFHVQPGECFGLLGPNGAGKTTALKMLLGITHPDAGS 61
>sp|Q1BWI2|NODI_BURCA Nod factor export ATP-binding protein I OS=Burkholderia
cenocepacia (strain AU 1054) GN=nodI PE=3 SV=1
Length = 304
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/46 (60%), Positives = 31/46 (67%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
Y K VN +SF V GEC+GLLG NGAGKTTT KML G P +G
Sbjct: 15 YGDKLVVNGLSFSVKVGECYGLLGPNGAGKTTTLKMLLGLAHPDAG 60
>sp|Q13ZJ1|NODI_BURXL Nod factor export ATP-binding protein I OS=Burkholderia
xenovorans (strain LB400) GN=nodI PE=3 SV=1
Length = 304
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 31/46 (67%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
Y K V+ +SF V GECFGLLG NGAGKTTT +ML G P +G
Sbjct: 15 YGEKTVVDGLSFHVAPGECFGLLGPNGAGKTTTLRMLLGIAAPDAG 60
>sp|Q8GNH6|NODI_RHIML Nod factor export ATP-binding protein I OS=Rhizobium meliloti
GN=nodI PE=3 SV=1
Length = 335
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 37/66 (56%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
T Y KP V+ +SF V GECFGLLG NGAGK+T +M+ G P +G V+ +
Sbjct: 43 TKSYGDKPVVDGLSFTVAAGECFGLLGPNGAGKSTITRMILGMTTPATGVITVLGVPVPS 102
Query: 75 SMDLVR 80
L R
Sbjct: 103 RARLAR 108
>sp|Q8XXY9|NODI_RALSO Nod factor export ATP-binding protein I OS=Ralstonia solanacearum
(strain GMI1000) GN=nodI PE=3 SV=1
Length = 321
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
Y + V+ +SF V RG+CFGLLG NGAGKTTT +ML G P +G + +I
Sbjct: 26 YGEQTVVDGLSFSVRRGQCFGLLGPNGAGKTTTLRMLLGMTMPDAGTLQLCGETI 80
>sp|Q8T6J2|ABCA5_DICDI ABC transporter A family member 5 OS=Dictyostelium discoideum
GN=abcA5 PE=3 SV=1
Length = 1662
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 34/52 (65%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
K AV + G+ +G+ FGLLGLNGAGKTTT ML G I PTSG + H +
Sbjct: 1340 KNAVYNSTLGIPQGQTFGLLGLNGAGKTTTVSMLAGDILPTSGQITINGHDL 1391
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
AVN ++ + G+ GLLG NG+GK+TT MLTG + PTSG A+++ + I M+ +R
Sbjct: 523 AVNDLNLDMFDGQIHGLLGPNGSGKSTTISMLTGLLSPTSGTAFILGNDITYQMNEIR 580
>sp|Q54R52|ABCAA_DICDI ABC transporter A family member 10 OS=Dictyostelium discoideum
GN=abcA10 PE=3 SV=1
Length = 887
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 78
+T AVN +S+ + +G LLG NG+GKT+T ML G P+SG+A++ SI+ MD
Sbjct: 497 ETVNAVNDVSYTIKKGTILALLGQNGSGKTSTIGMLNGMRSPSSGDAFINGLSIKYDMDK 556
Query: 79 VR 80
+R
Sbjct: 557 IR 558
>sp|P34358|CED7_CAEEL ABC transporter ced-7 OS=Caenorhabditis elegans GN=ced-7 PE=1 SV=6
Length = 1704
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
AVN++ V + ECFGLLG+NGAGKTTTF +LTG +SG A +
Sbjct: 1393 AVNELCLAVDQKECFGLLGVNGAGKTTTFNILTGQSFASSGEAMI 1437
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
AV+ +S RG+C LLG NGAGK+TTF + G I+PT+G + + +
Sbjct: 562 AVDGLSLRAVRGQCSILLGHNGAGKSTTFSSIAGIIRPTNGRITICGYDV 611
>sp|Q8T5Z7|ABCA1_DICDI ABC transporter A family member 1 OS=Dictyostelium discoideum
GN=abcA1 PE=2 SV=1
Length = 877
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%)
Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 76
P T AV +S V +G G LG NG GK+TT MLTG ++PT+G+A V HS+ ++
Sbjct: 567 PKKTVHAVKYLSLSVEKGTILGFLGSNGCGKSTTIGMLTGLLEPTAGDALVYGHSVISNI 626
Query: 77 DLVR 80
VR
Sbjct: 627 AAVR 630
>sp|Q39GT7|NODI_BURS3 Nod factor export ATP-binding protein I OS=Burkholderia sp.
(strain 383) GN=nodI PE=3 SV=2
Length = 304
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 31/46 (67%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+ K VN +SF V GEC+GLLG NGAGKTTT KML G P +G
Sbjct: 15 FGDKLVVNGLSFTVQAGECYGLLGPNGAGKTTTLKMLLGLTHPDAG 60
>sp|Q8WWZ4|ABCAA_HUMAN ATP-binding cassette sub-family A member 10 OS=Homo sapiens GN=ABCA10
PE=2 SV=3
Length = 1543
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
K A+ +SF V +GE GLLG NGAGK+T+ KM+TG KPT+G
Sbjct: 1219 KIAIRNVSFCVKKGEVLGLLGHNGAGKSTSIKMITGCTKPTAG 1261
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 78
A+ I F + G+ +LG NGAGK+T +L+G T G+A + N + + D+
Sbjct: 409 ALQGIFFDIYEGQITAILGHNGAGKSTLLNILSGLSVSTEGSATIYNTQLSEITDM 464
>sp|P23703|NODI_RHILO Nod factor export ATP-binding protein I OS=Rhizobium loti (strain
MAFF303099) GN=nodI PE=3 SV=2
Length = 340
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 37/66 (56%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
T Y K V+++SF V GECFGLLG NGAGK+T +ML G P +G V+ +
Sbjct: 48 TKSYGNKIVVDELSFSVASGECFGLLGPNGAGKSTIARMLLGMTCPDAGTITVLGVPVPA 107
Query: 75 SMDLVR 80
L R
Sbjct: 108 RARLAR 113
>sp|Q9FLT8|AB12A_ARATH ABC transporter A family member 12 OS=Arabidopsis thaliana
GN=ABCA12 PE=3 SV=1
Length = 917
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 36/59 (61%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV 79
K AV + V GECFG+LG NGAGKT+ M+TG +KP+SG A V I M+ V
Sbjct: 613 KMAVRGLYLSVSSGECFGMLGPNGAGKTSFISMMTGLLKPSSGTALVQGLDICKDMNKV 671
>sp|Q9FLT4|AB10A_ARATH ABC transporter A family member 10 OS=Arabidopsis thaliana
GN=ABCA10 PE=1 SV=2
Length = 909
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 36/59 (61%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV 79
K AV + V GECFG+LG NGAGKT+ M+TG +KPTSG A V I M+ V
Sbjct: 605 KLAVRGLYLDVPSGECFGMLGPNGAGKTSFINMMTGLLKPTSGTALVQGLDICKDMNKV 663
>sp|Q8IUA7|ABCA9_HUMAN ATP-binding cassette sub-family A member 9 OS=Homo sapiens GN=ABCA9
PE=1 SV=1
Length = 1624
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/43 (60%), Positives = 31/43 (72%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
K A +SF V +GE GLLG NGAGK+TT KM+TG KPT+G
Sbjct: 1306 KIATRNVSFCVKKGEVIGLLGHNGAGKSTTIKMITGDTKPTAG 1348
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 78
A+ + F + G+ LLG +GAGKTT +L+G PTSG+ V NH++ D+
Sbjct: 499 ALKGVVFDIYEGQITALLGHSGAGKTTLLNILSGLSVPTSGSVTVYNHTLSRMADI 554
>sp|Q8WWZ7|ABCA5_HUMAN ATP-binding cassette sub-family A member 5 OS=Homo sapiens GN=ABCA5
PE=2 SV=2
Length = 1642
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
K A ISF V +GE GLLG NGAGK+T +L G I+PTSG ++ ++S S D
Sbjct: 1313 KVATKYISFCVKKGEILGLLGPNGAGKSTIINILVGDIEPTSGQVFLGDYSSETSED 1369
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
A+ +SF + G+ LLG +G GK+T +L G P+ G A + H + +
Sbjct: 496 ALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASIYGHRVSE 547
>sp|Q555Z5|ABCA4_DICDI ABC transporter A family member 4 OS=Dictyostelium discoideum
GN=abcA4 PE=3 SV=1
Length = 1615
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
AVN +S + + LG NG+GK+TT MLTG I+PTSG+A + IR+++D +R
Sbjct: 510 AVNDLSIDMYKNRIHSFLGPNGSGKSTTLSMLTGMIEPTSGDALINGFDIRNNIDEIR 567
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
Y +K AV + + G+ FGLLGLNG GK+TT M++G I PT G
Sbjct: 1308 YKSKIAVYNSTLAIPTGQTFGLLGLNGCGKSTTLGMISGEISPTGG 1353
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,376,896
Number of Sequences: 539616
Number of extensions: 1040864
Number of successful extensions: 9206
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2734
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 5955
Number of HSP's gapped (non-prelim): 3331
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)