Query psy7220
Match_columns 80
No_of_seqs 182 out of 2516
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 21:11:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1120 FepC ABC-type cobalami 99.9 8.5E-24 1.9E-28 144.6 0.2 67 8-74 2-68 (258)
2 COG0411 LivG ABC-type branched 99.9 1.8E-22 3.9E-27 136.9 4.4 67 9-75 5-71 (250)
3 COG3842 PotA ABC-type spermidi 99.8 1.9E-22 4.1E-27 142.9 0.6 67 8-74 5-71 (352)
4 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 2.7E-22 5.8E-27 137.0 0.5 66 8-73 4-69 (254)
5 COG1116 TauB ABC-type nitrate/ 99.8 4.8E-22 1E-26 135.1 0.4 64 9-72 4-67 (248)
6 COG1126 GlnQ ABC-type polar am 99.8 4.7E-22 1E-26 133.5 0.2 66 8-73 2-67 (240)
7 COG3839 MalK ABC-type sugar tr 99.8 5.5E-22 1.2E-26 139.9 0.4 67 8-74 3-69 (338)
8 cd03261 ABC_Org_Solvent_Resist 99.8 6.4E-22 1.4E-26 132.0 0.3 64 10-73 2-65 (235)
9 cd03259 ABC_Carb_Solutes_like 99.8 6.8E-22 1.5E-26 130.1 0.4 64 10-73 2-65 (213)
10 COG4152 ABC-type uncharacteriz 99.8 1.5E-21 3.3E-26 133.4 2.0 67 8-74 2-68 (300)
11 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 7.2E-22 1.6E-26 130.2 0.4 64 10-73 2-69 (218)
12 COG1125 OpuBA ABC-type proline 99.8 1.2E-21 2.6E-26 134.5 1.5 66 9-74 2-67 (309)
13 cd03224 ABC_TM1139_LivF_branch 99.8 1.4E-21 3.1E-26 129.0 1.2 64 10-73 2-65 (222)
14 cd03263 ABC_subfamily_A The AB 99.8 1.4E-21 3.1E-26 129.0 0.7 64 10-73 2-67 (220)
15 COG1131 CcmA ABC-type multidru 99.8 9.6E-22 2.1E-26 136.2 -0.1 67 8-74 4-71 (293)
16 PRK13537 nodulation ABC transp 99.8 8.2E-22 1.8E-26 136.9 -0.7 67 8-74 7-73 (306)
17 COG4555 NatA ABC-type Na+ tran 99.8 1.8E-21 3.8E-26 130.1 0.8 72 9-80 2-74 (245)
18 PRK13536 nodulation factor exp 99.8 1E-21 2.2E-26 138.4 -0.4 66 8-73 41-106 (340)
19 cd03235 ABC_Metallic_Cations A 99.8 1.8E-21 3.9E-26 128.1 0.6 62 11-72 2-63 (213)
20 cd03269 ABC_putative_ATPase Th 99.8 1.6E-21 3.5E-26 128.1 0.3 64 10-73 2-65 (210)
21 cd03265 ABC_DrrA DrrA is the A 99.8 1.5E-21 3.3E-26 129.1 0.1 64 10-73 2-65 (220)
22 cd03301 ABC_MalK_N The N-termi 99.8 1.7E-21 3.6E-26 128.1 0.3 64 10-73 2-65 (213)
23 cd03218 ABC_YhbG The ABC trans 99.8 1.7E-21 3.7E-26 129.5 0.3 64 10-73 2-65 (232)
24 TIGR03410 urea_trans_UrtE urea 99.8 1.9E-21 4.1E-26 129.2 0.5 64 10-73 2-65 (230)
25 cd03219 ABC_Mj1267_LivG_branch 99.8 1.9E-21 4E-26 129.5 0.4 64 10-73 2-65 (236)
26 cd03226 ABC_cobalt_CbiO_domain 99.8 2.2E-21 4.7E-26 127.2 0.6 62 11-72 2-64 (205)
27 TIGR02673 FtsE cell division A 99.8 2E-21 4.4E-26 127.8 0.4 65 9-73 2-67 (214)
28 cd03296 ABC_CysA_sulfate_impor 99.8 1.8E-21 3.9E-26 130.2 0.1 65 9-73 3-67 (239)
29 COG1137 YhbG ABC-type (unclass 99.8 1.7E-20 3.6E-25 125.3 4.7 66 9-74 5-70 (243)
30 PRK13540 cytochrome c biogenes 99.8 2.3E-21 5.1E-26 126.9 0.5 65 9-73 2-66 (200)
31 cd03256 ABC_PhnC_transporter A 99.8 2.5E-21 5.4E-26 129.1 0.6 64 10-73 2-66 (241)
32 cd03262 ABC_HisP_GlnQ_permease 99.8 2E-21 4.3E-26 127.6 0.1 64 10-73 2-65 (213)
33 cd03257 ABC_NikE_OppD_transpor 99.8 2.5E-21 5.4E-26 128.1 0.6 65 9-73 2-70 (228)
34 cd03216 ABC_Carb_Monos_I This 99.8 2.3E-21 5E-26 124.0 0.4 65 10-74 2-66 (163)
35 cd03225 ABC_cobalt_CbiO_domain 99.8 2.8E-21 6.2E-26 126.8 0.8 63 11-73 2-66 (211)
36 cd03258 ABC_MetN_methionine_tr 99.8 2.7E-21 5.7E-26 128.7 0.6 65 9-73 2-70 (233)
37 cd03293 ABC_NrtD_SsuB_transpor 99.8 2.4E-21 5.1E-26 128.2 0.3 64 10-73 2-69 (220)
38 TIGR02315 ABC_phnC phosphonate 99.8 2.7E-21 5.9E-26 129.2 0.6 65 9-73 2-67 (243)
39 PRK11248 tauB taurine transpor 99.8 2.8E-21 6E-26 131.1 0.4 65 9-73 2-66 (255)
40 TIGR00960 3a0501s02 Type II (G 99.8 2.4E-21 5.2E-26 127.7 0.1 65 9-73 2-68 (216)
41 PRK10247 putative ABC transpor 99.8 3.2E-21 6.8E-26 128.3 0.6 66 8-73 7-72 (225)
42 cd03268 ABC_BcrA_bacitracin_re 99.8 3E-21 6.5E-26 126.7 0.4 64 10-73 2-65 (208)
43 cd03229 ABC_Class3 This class 99.8 2.8E-21 6.1E-26 124.7 0.3 64 10-73 2-65 (178)
44 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 2.6E-21 5.7E-26 129.2 0.1 65 9-73 2-66 (236)
45 TIGR01189 ccmA heme ABC export 99.8 2.9E-21 6.4E-26 126.1 0.3 64 10-73 2-65 (198)
46 cd03266 ABC_NatA_sodium_export 99.8 3.7E-21 8E-26 126.8 0.8 65 9-73 2-70 (218)
47 PRK11701 phnK phosphonate C-P 99.8 3.9E-21 8.4E-26 129.9 0.9 64 8-71 6-69 (258)
48 cd03260 ABC_PstB_phosphate_tra 99.8 3E-21 6.5E-26 128.1 0.3 64 10-73 2-70 (227)
49 TIGR01288 nodI ATP-binding ABC 99.8 2.2E-21 4.8E-26 134.2 -0.4 65 9-73 5-69 (303)
50 TIGR03608 L_ocin_972_ABC putat 99.8 2.9E-21 6.3E-26 126.3 0.2 61 12-72 2-62 (206)
51 PRK13538 cytochrome c biogenes 99.8 3.1E-21 6.8E-26 126.6 0.0 65 9-73 2-66 (204)
52 PRK13638 cbiO cobalt transport 99.8 4.4E-21 9.5E-26 130.7 0.7 64 9-72 2-65 (271)
53 COG0410 LivF ABC-type branched 99.8 4.8E-21 1E-25 129.2 0.9 68 8-75 3-70 (237)
54 PRK11614 livF leucine/isoleuci 99.8 5.1E-21 1.1E-25 127.8 0.9 66 8-73 5-70 (237)
55 PRK11831 putative ABC transpor 99.8 4.6E-21 9.9E-26 130.6 0.5 66 8-73 7-72 (269)
56 COG1127 Ttg2A ABC-type transpo 99.8 5.3E-21 1.2E-25 129.9 0.8 68 7-74 7-74 (263)
57 PRK10895 lipopolysaccharide AB 99.8 4.8E-21 1E-25 128.2 0.5 65 9-73 4-68 (241)
58 COG3638 ABC-type phosphate/pho 99.8 6.5E-21 1.4E-25 129.2 1.0 67 8-74 3-70 (258)
59 PRK11629 lolD lipoprotein tran 99.8 4.7E-21 1E-25 127.8 0.3 65 9-73 6-74 (233)
60 cd03231 ABC_CcmA_heme_exporter 99.8 4.2E-21 9.1E-26 125.9 0.0 64 10-73 2-65 (201)
61 PRK10908 cell division protein 99.8 4.6E-21 1E-25 126.9 0.2 65 9-73 2-67 (222)
62 cd03292 ABC_FtsE_transporter F 99.8 5.1E-21 1.1E-25 125.7 0.4 64 10-73 2-66 (214)
63 PRK14250 phosphate ABC transpo 99.8 4.7E-21 1E-25 128.6 0.2 65 9-73 4-68 (241)
64 PRK09493 glnQ glutamine ABC tr 99.8 4.6E-21 1E-25 128.2 0.2 65 9-73 2-66 (240)
65 PRK11300 livG leucine/isoleuci 99.8 6E-21 1.3E-25 128.5 0.6 66 8-73 5-70 (255)
66 PRK10584 putative ABC transpor 99.8 5.2E-21 1.1E-25 127.0 0.3 66 8-73 6-75 (228)
67 TIGR03522 GldA_ABC_ATP gliding 99.8 5.1E-21 1.1E-25 132.4 0.2 66 9-74 3-68 (301)
68 TIGR03411 urea_trans_UrtD urea 99.8 6.6E-21 1.4E-25 127.4 0.7 65 9-73 3-67 (242)
69 cd03295 ABC_OpuCA_Osmoprotecti 99.8 7.1E-21 1.5E-25 127.5 0.8 64 10-73 2-66 (242)
70 TIGR02211 LolD_lipo_ex lipopro 99.8 6.2E-21 1.4E-25 126.0 0.5 64 10-73 3-70 (221)
71 PRK13539 cytochrome c biogenes 99.8 6E-21 1.3E-25 125.6 0.1 64 9-72 3-66 (207)
72 TIGR03873 F420-0_ABC_ATP propo 99.8 7.7E-21 1.7E-25 128.4 0.6 65 9-73 2-66 (256)
73 cd03228 ABCC_MRP_Like The MRP 99.8 8.1E-21 1.8E-25 121.9 0.6 64 10-73 2-67 (171)
74 cd03230 ABC_DR_subfamily_A Thi 99.8 7.4E-21 1.6E-25 122.3 0.4 64 10-73 2-65 (173)
75 TIGR01978 sufC FeS assembly AT 99.8 6.5E-21 1.4E-25 127.2 0.1 64 10-73 2-67 (243)
76 TIGR03005 ectoine_ehuA ectoine 99.8 7.5E-21 1.6E-25 128.1 0.4 64 10-73 2-65 (252)
77 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 9.4E-21 2E-25 126.2 0.8 64 9-72 23-86 (224)
78 cd03214 ABC_Iron-Siderophores_ 99.8 8.2E-21 1.8E-25 122.7 0.5 63 11-73 2-64 (180)
79 PRK13548 hmuV hemin importer A 99.8 8E-21 1.7E-25 128.7 0.4 65 9-73 3-67 (258)
80 PRK10575 iron-hydroxamate tran 99.8 8.2E-21 1.8E-25 129.0 0.3 66 8-73 11-76 (265)
81 PRK11264 putative amino-acid A 99.8 7.1E-21 1.5E-25 127.8 -0.1 65 9-73 4-68 (250)
82 PRK13543 cytochrome c biogenes 99.8 1.1E-20 2.3E-25 125.0 0.5 66 8-73 11-76 (214)
83 PRK11124 artP arginine transpo 99.8 9.1E-21 2E-25 126.9 0.1 64 9-72 3-66 (242)
84 PRK11231 fecE iron-dicitrate t 99.8 9.5E-21 2.1E-25 127.9 0.1 65 9-73 3-67 (255)
85 PRK09536 btuD corrinoid ABC tr 99.8 9.8E-21 2.1E-25 136.1 0.1 66 9-74 4-69 (402)
86 PRK11247 ssuB aliphatic sulfon 99.8 9.8E-21 2.1E-25 128.8 0.1 66 7-72 11-76 (257)
87 PRK11153 metN DL-methionine tr 99.8 1.1E-20 2.5E-25 132.9 0.3 65 9-73 2-70 (343)
88 PRK10253 iron-enterobactin tra 99.8 1E-20 2.3E-25 128.5 0.0 67 7-73 6-72 (265)
89 cd03247 ABCC_cytochrome_bd The 99.8 1.5E-20 3.2E-25 121.2 0.7 64 10-73 2-67 (178)
90 cd03264 ABC_drug_resistance_li 99.8 1.1E-20 2.4E-25 124.1 0.1 63 10-73 2-64 (211)
91 TIGR00972 3a0107s01c2 phosphat 99.8 1.1E-20 2.4E-25 126.9 0.1 65 9-73 2-71 (247)
92 TIGR03265 PhnT2 putative 2-ami 99.8 1.1E-20 2.3E-25 133.8 -0.2 66 8-73 4-69 (353)
93 TIGR02323 CP_lyasePhnK phospho 99.8 1.5E-20 3.2E-25 126.5 0.5 63 9-71 4-66 (253)
94 cd03245 ABCC_bacteriocin_expor 99.8 1.6E-20 3.4E-25 124.0 0.5 65 9-73 3-69 (220)
95 PRK13649 cbiO cobalt transport 99.8 1.8E-20 3.9E-25 128.1 0.7 65 9-73 3-72 (280)
96 cd03251 ABCC_MsbA MsbA is an e 99.8 1.8E-20 3.8E-25 124.7 0.5 64 10-73 2-67 (234)
97 PRK11432 fbpC ferric transport 99.8 1.3E-20 2.8E-25 133.3 -0.1 66 8-73 6-71 (351)
98 TIGR01188 drrA daunorubicin re 99.8 2E-20 4.3E-25 129.4 0.8 57 17-73 2-58 (302)
99 cd03254 ABCC_Glucan_exporter_l 99.8 1.7E-20 3.6E-25 124.5 0.4 66 8-73 2-68 (229)
100 cd03294 ABC_Pro_Gly_Bertaine T 99.8 1.9E-20 4.1E-25 127.7 0.6 64 10-73 26-89 (269)
101 PRK13637 cbiO cobalt transport 99.8 1.9E-20 4.2E-25 128.8 0.6 66 9-74 3-73 (287)
102 PRK13647 cbiO cobalt transport 99.8 1.8E-20 3.9E-25 128.2 0.4 65 9-73 5-70 (274)
103 cd03246 ABCC_Protease_Secretio 99.8 2.3E-20 4.9E-25 120.0 0.8 64 10-73 2-67 (173)
104 PRK13644 cbiO cobalt transport 99.8 2.1E-20 4.6E-25 127.8 0.7 65 9-73 2-67 (274)
105 PRK15056 manganese/iron transp 99.8 1.7E-20 3.7E-25 127.9 0.2 66 8-73 6-72 (272)
106 COG1124 DppF ABC-type dipeptid 99.8 2.2E-20 4.8E-25 126.8 0.7 66 9-74 4-73 (252)
107 TIGR03740 galliderm_ABC gallid 99.8 1.8E-20 3.9E-25 124.2 0.2 64 10-73 2-65 (223)
108 PRK11000 maltose/maltodextrin 99.8 1.8E-20 3.9E-25 133.1 0.1 65 9-73 4-68 (369)
109 PRK13641 cbiO cobalt transport 99.8 2.3E-20 4.9E-25 128.4 0.5 65 9-73 3-72 (287)
110 PRK13652 cbiO cobalt transport 99.8 2.3E-20 5E-25 127.7 0.6 65 9-73 4-69 (277)
111 PRK13645 cbiO cobalt transport 99.8 2.3E-20 5E-25 128.2 0.5 67 7-73 5-76 (289)
112 TIGR01166 cbiO cobalt transpor 99.8 3.1E-20 6.6E-25 120.5 1.1 56 18-73 2-57 (190)
113 PRK10851 sulfate/thiosulfate t 99.8 2.1E-20 4.6E-25 132.2 0.4 65 9-73 3-67 (353)
114 PRK11650 ugpC glycerol-3-phosp 99.8 1.9E-20 4.1E-25 132.6 0.0 65 9-73 4-69 (356)
115 PRK10619 histidine/lysine/argi 99.8 2E-20 4.4E-25 126.4 0.2 66 8-73 5-70 (257)
116 PRK10744 pstB phosphate transp 99.8 1.8E-20 4E-25 126.9 -0.1 69 5-73 10-83 (260)
117 PRK13648 cbiO cobalt transport 99.8 2.7E-20 5.9E-25 126.7 0.7 67 7-73 6-74 (269)
118 PRK15112 antimicrobial peptide 99.8 2.4E-20 5.2E-25 126.9 0.4 65 9-73 5-78 (267)
119 COG4604 CeuD ABC-type enteroch 99.8 2.2E-20 4.8E-25 124.7 0.2 66 9-74 2-67 (252)
120 PRK13646 cbiO cobalt transport 99.8 2.4E-20 5.2E-25 128.2 0.4 65 9-73 3-72 (286)
121 TIGR02769 nickel_nikE nickel i 99.8 2.2E-20 4.7E-25 126.9 0.1 65 9-73 3-76 (265)
122 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 2.9E-20 6.3E-25 117.0 0.5 61 10-70 2-62 (144)
123 cd03252 ABCC_Hemolysin The ABC 99.8 3.1E-20 6.8E-25 123.8 0.6 64 10-73 2-67 (237)
124 PRK14267 phosphate ABC transpo 99.8 2.3E-20 5.1E-25 125.6 -0.0 65 9-73 5-74 (253)
125 TIGR02314 ABC_MetN D-methionin 99.8 2.5E-20 5.5E-25 131.6 0.1 66 9-74 2-71 (343)
126 PRK13634 cbiO cobalt transport 99.8 2.8E-20 6.1E-25 128.1 0.3 65 9-73 3-72 (290)
127 PRK14242 phosphate transporter 99.8 2.3E-20 5E-25 125.6 -0.2 67 7-73 5-76 (253)
128 PRK09580 sufC cysteine desulfu 99.8 3.1E-20 6.8E-25 124.4 0.4 65 9-73 2-68 (248)
129 PRK13632 cbiO cobalt transport 99.8 3.9E-20 8.4E-25 126.2 0.8 66 8-73 7-74 (271)
130 PRK09700 D-allose transporter 99.8 4E-20 8.6E-25 134.9 0.8 66 8-73 5-70 (510)
131 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 3.6E-20 7.8E-25 123.6 0.6 64 10-73 2-68 (238)
132 cd03250 ABCC_MRP_domain1 Domai 99.8 4.5E-20 9.9E-25 120.9 1.0 60 10-69 2-66 (204)
133 PRK13636 cbiO cobalt transport 99.8 3.6E-20 7.8E-25 127.1 0.4 65 8-72 5-70 (283)
134 cd03253 ABCC_ATM1_transporter 99.8 3.9E-20 8.6E-25 123.2 0.5 64 10-73 2-66 (236)
135 PRK13541 cytochrome c biogenes 99.8 3.8E-20 8.2E-25 120.8 0.4 64 9-73 2-65 (195)
136 TIGR02982 heterocyst_DevA ABC 99.8 3.4E-20 7.4E-25 122.8 0.2 64 10-73 3-70 (220)
137 PRK13635 cbiO cobalt transport 99.8 4.1E-20 8.9E-25 126.8 0.6 65 9-73 6-72 (279)
138 PRK13639 cbiO cobalt transport 99.8 4.2E-20 9.1E-25 126.3 0.5 65 9-73 2-67 (275)
139 cd03217 ABC_FeS_Assembly ABC-t 99.8 3.3E-20 7.1E-25 121.7 -0.0 65 10-74 2-68 (200)
140 PRK10762 D-ribose transporter 99.8 4.3E-20 9.3E-25 134.6 0.6 66 8-73 4-69 (501)
141 cd03300 ABC_PotA_N PotA is an 99.8 3.5E-20 7.5E-25 123.7 0.1 64 10-73 2-65 (232)
142 PRK14241 phosphate transporter 99.8 3.4E-20 7.4E-25 125.3 0.0 65 8-72 4-73 (258)
143 COG4559 ABC-type hemin transpo 99.8 4E-20 8.7E-25 124.4 0.4 66 9-74 2-67 (259)
144 TIGR00968 3a0106s01 sulfate AB 99.8 4.2E-20 9.1E-25 123.7 0.4 64 10-73 2-65 (237)
145 PRK13547 hmuV hemin importer A 99.8 3.6E-20 7.7E-25 127.0 0.1 65 9-73 2-74 (272)
146 PRK14235 phosphate transporter 99.8 3.4E-20 7.3E-25 126.2 -0.1 66 8-73 19-89 (267)
147 PRK13650 cbiO cobalt transport 99.8 4.9E-20 1.1E-24 126.3 0.7 66 8-73 4-72 (279)
148 cd03244 ABCC_MRP_domain2 Domai 99.8 4.4E-20 9.6E-25 121.9 0.4 65 9-73 3-69 (221)
149 TIGR03258 PhnT 2-aminoethylpho 99.8 3.5E-20 7.6E-25 131.6 -0.1 68 6-73 3-72 (362)
150 PRK14259 phosphate ABC transpo 99.8 3.8E-20 8.3E-25 126.2 0.0 66 8-73 13-83 (269)
151 PRK14269 phosphate ABC transpo 99.8 4.7E-20 1E-24 123.9 0.4 65 9-73 3-70 (246)
152 COG1136 SalX ABC-type antimicr 99.8 4.8E-20 1E-24 124.2 0.3 64 11-74 4-71 (226)
153 PRK14247 phosphate ABC transpo 99.8 4E-20 8.7E-25 124.3 -0.1 65 9-73 4-73 (250)
154 cd03248 ABCC_TAP TAP, the Tran 99.8 4.9E-20 1.1E-24 122.2 0.2 67 7-73 10-79 (226)
155 cd03213 ABCG_EPDR ABCG transpo 99.8 4.4E-20 9.6E-25 120.7 -0.0 65 9-73 4-76 (194)
156 CHL00131 ycf16 sulfate ABC tra 99.8 5.6E-20 1.2E-24 123.5 0.4 66 8-73 7-74 (252)
157 PRK14268 phosphate ABC transpo 99.8 5.4E-20 1.2E-24 124.5 0.2 67 7-73 11-82 (258)
158 PRK13633 cobalt transporter AT 99.8 7.1E-20 1.5E-24 125.4 0.7 65 9-73 5-75 (280)
159 COG4133 CcmA ABC-type transpor 99.8 8.7E-20 1.9E-24 120.5 1.1 70 8-77 2-71 (209)
160 PRK09452 potA putrescine/sperm 99.8 5.4E-20 1.2E-24 131.2 0.1 66 8-73 14-79 (375)
161 PRK13643 cbiO cobalt transport 99.8 5.9E-20 1.3E-24 126.4 0.3 65 9-73 2-71 (288)
162 cd03233 ABC_PDR_domain1 The pl 99.8 7.9E-20 1.7E-24 120.2 0.8 65 9-73 4-75 (202)
163 PRK09544 znuC high-affinity zi 99.8 6.1E-20 1.3E-24 124.4 0.2 62 9-70 5-66 (251)
164 PRK14273 phosphate ABC transpo 99.8 5.7E-20 1.2E-24 123.9 0.0 66 8-73 7-77 (254)
165 PRK14251 phosphate ABC transpo 99.8 5.9E-20 1.3E-24 123.5 0.1 65 9-73 5-74 (251)
166 PRK15439 autoinducer 2 ABC tra 99.8 7E-20 1.5E-24 133.9 0.4 66 8-73 11-76 (510)
167 PRK14262 phosphate ABC transpo 99.8 6.5E-20 1.4E-24 123.2 0.2 65 9-73 4-73 (250)
168 TIGR02868 CydC thiol reductant 99.8 6.8E-20 1.5E-24 133.8 0.3 67 8-74 334-401 (529)
169 PRK14248 phosphate ABC transpo 99.8 6.6E-20 1.4E-24 124.6 0.1 66 8-73 21-91 (268)
170 PRK10938 putative molybdenum t 99.8 8.2E-20 1.8E-24 132.6 0.6 64 9-72 4-67 (490)
171 COG1129 MglA ABC-type sugar tr 99.8 9.1E-20 2E-24 133.7 0.8 67 7-73 7-73 (500)
172 cd03215 ABC_Carb_Monos_II This 99.8 8.4E-20 1.8E-24 118.2 0.5 61 9-73 5-65 (182)
173 PRK10418 nikD nickel transport 99.8 7.8E-20 1.7E-24 123.5 0.4 64 9-73 5-72 (254)
174 cd03288 ABCC_SUR2 The SUR doma 99.8 8.5E-20 1.8E-24 123.6 0.5 67 7-73 18-86 (257)
175 PRK13651 cobalt transporter AT 99.8 9.6E-20 2.1E-24 126.7 0.6 64 9-72 3-71 (305)
176 PRK14238 phosphate transporter 99.8 8.2E-20 1.8E-24 124.7 0.2 66 8-73 24-94 (271)
177 PRK10419 nikE nickel transport 99.8 9.3E-20 2E-24 124.2 0.4 65 9-73 4-77 (268)
178 PRK14240 phosphate transporter 99.8 7.6E-20 1.6E-24 122.9 -0.0 65 9-73 4-73 (250)
179 cd03369 ABCC_NFT1 Domain 2 of 99.8 8E-20 1.7E-24 119.9 0.1 67 7-73 5-73 (207)
180 cd03290 ABCC_SUR1_N The SUR do 99.8 1.3E-19 2.8E-24 119.7 1.1 63 11-73 3-66 (218)
181 PRK14261 phosphate ABC transpo 99.8 9.2E-20 2E-24 122.8 0.4 66 8-73 6-76 (253)
182 PRK13631 cbiO cobalt transport 99.8 1E-19 2.3E-24 127.2 0.6 66 8-73 21-91 (320)
183 PRK09984 phosphonate/organopho 99.8 8.6E-20 1.9E-24 123.6 0.1 65 9-73 5-72 (262)
184 cd03298 ABC_ThiQ_thiamine_tran 99.8 1E-19 2.2E-24 119.6 0.4 62 10-73 2-63 (211)
185 cd03267 ABC_NatA_like Similar 99.8 1.4E-19 2.9E-24 121.3 0.9 57 16-72 29-85 (236)
186 PRK14256 phosphate ABC transpo 99.8 8.2E-20 1.8E-24 123.0 -0.2 65 9-73 5-74 (252)
187 PRK14237 phosphate transporter 99.8 9.4E-20 2E-24 124.0 0.1 66 8-73 20-90 (267)
188 PRK14272 phosphate ABC transpo 99.8 9E-20 2E-24 122.5 -0.1 66 8-73 4-74 (252)
189 cd03223 ABCD_peroxisomal_ALDP 99.8 1.2E-19 2.6E-24 116.3 0.4 61 10-70 2-63 (166)
190 PRK14274 phosphate ABC transpo 99.8 9.3E-20 2E-24 123.3 -0.1 66 8-73 12-82 (259)
191 TIGR02324 CP_lyasePhnL phospho 99.8 1.2E-19 2.6E-24 120.2 0.4 61 9-69 2-69 (224)
192 PRK14270 phosphate ABC transpo 99.8 1E-19 2.2E-24 122.4 0.1 65 9-73 5-74 (251)
193 PRK13549 xylose transporter AT 99.8 1.2E-19 2.7E-24 132.3 0.4 66 8-73 5-72 (506)
194 PRK11288 araG L-arabinose tran 99.8 1.3E-19 2.9E-24 132.0 0.5 66 8-73 4-69 (501)
195 cd03299 ABC_ModC_like Archeal 99.8 1.4E-19 3.1E-24 121.0 0.6 63 10-73 2-64 (235)
196 PRK13640 cbiO cobalt transport 99.7 1.7E-19 3.7E-24 123.8 0.6 65 9-73 6-75 (282)
197 PRK11607 potG putrescine trans 99.7 1.3E-19 2.9E-24 129.2 -0.0 66 8-73 19-84 (377)
198 PRK10636 putative ABC transpor 99.7 1.6E-19 3.5E-24 135.3 0.4 62 9-70 2-63 (638)
199 PRK13642 cbiO cobalt transport 99.7 2.1E-19 4.6E-24 123.0 0.7 65 9-73 5-72 (277)
200 COG3845 ABC-type uncharacteriz 99.7 1.9E-19 4.1E-24 131.2 0.5 66 8-73 4-69 (501)
201 PRK10982 galactose/methyl gala 99.7 2.1E-19 4.5E-24 130.7 0.6 62 12-73 2-63 (491)
202 cd03232 ABC_PDR_domain2 The pl 99.7 1.6E-19 3.5E-24 117.8 0.0 64 9-72 4-73 (192)
203 TIGR01186 proV glycine betaine 99.7 2.5E-19 5.4E-24 127.4 1.0 59 16-74 1-59 (363)
204 PRK10070 glycine betaine trans 99.7 2E-19 4.4E-24 129.2 0.6 59 15-73 35-93 (400)
205 PRK14254 phosphate ABC transpo 99.7 1.7E-19 3.6E-24 124.2 0.0 65 9-73 40-109 (285)
206 PRK14271 phosphate ABC transpo 99.7 1.7E-19 3.6E-24 123.6 0.1 66 8-73 21-91 (276)
207 COG2274 SunT ABC-type bacterio 99.7 1.8E-19 3.9E-24 136.6 0.2 67 8-74 471-539 (709)
208 PRK14249 phosphate ABC transpo 99.7 1.7E-19 3.7E-24 121.4 0.0 65 9-73 5-74 (251)
209 COG1135 AbcC ABC-type metal io 99.7 2.5E-19 5.3E-24 125.3 0.8 66 9-74 2-72 (339)
210 PRK14253 phosphate ABC transpo 99.7 1.5E-19 3.2E-24 121.4 -0.3 65 9-73 4-73 (249)
211 TIGR02633 xylG D-xylose ABC tr 99.7 2.2E-19 4.7E-24 130.7 0.4 65 9-73 2-68 (500)
212 COG2884 FtsE Predicted ATPase 99.7 2.3E-19 4.9E-24 119.0 0.4 66 9-74 2-68 (223)
213 PRK14239 phosphate transporter 99.7 2.2E-19 4.7E-24 120.7 0.3 66 8-73 5-75 (252)
214 TIGR03797 NHPM_micro_ABC2 NHPM 99.7 2.4E-19 5.3E-24 134.5 0.6 67 8-74 451-519 (686)
215 PRK14258 phosphate ABC transpo 99.7 2.1E-19 4.5E-24 121.9 0.1 67 6-72 5-76 (261)
216 PRK15079 oligopeptide ABC tran 99.7 2.2E-19 4.9E-24 126.1 0.3 53 21-73 34-86 (331)
217 PRK14243 phosphate transporter 99.7 1.8E-19 3.9E-24 122.5 -0.4 65 8-72 10-79 (264)
218 PRK15064 ABC transporter ATP-b 99.7 2.5E-19 5.5E-24 131.3 0.4 61 9-69 2-62 (530)
219 PRK14260 phosphate ABC transpo 99.7 2E-19 4.4E-24 121.7 -0.2 66 8-73 7-77 (259)
220 PRK10771 thiQ thiamine transpo 99.7 3.1E-19 6.8E-24 119.0 0.7 63 9-73 2-64 (232)
221 PRK14252 phosphate ABC transpo 99.7 2.7E-19 5.8E-24 121.5 0.3 65 8-72 16-85 (265)
222 TIGR01277 thiQ thiamine ABC tr 99.7 3.9E-19 8.5E-24 117.2 1.0 62 10-73 2-63 (213)
223 PRK14236 phosphate transporter 99.7 2.5E-19 5.5E-24 122.2 0.1 66 8-73 25-95 (272)
224 PRK14246 phosphate ABC transpo 99.7 3.6E-19 7.8E-24 120.8 0.7 64 6-69 8-71 (257)
225 PRK14275 phosphate ABC transpo 99.7 2.8E-19 6E-24 123.0 0.2 65 9-73 40-109 (286)
226 TIGR01193 bacteriocin_ABC ABC- 99.7 3.1E-19 6.7E-24 134.3 0.4 67 8-74 473-540 (708)
227 PRK14265 phosphate ABC transpo 99.7 3.6E-19 7.7E-24 121.8 0.5 66 8-73 20-90 (274)
228 PRK14244 phosphate ABC transpo 99.7 2.8E-19 6.1E-24 120.4 -0.1 64 10-73 7-75 (251)
229 COG1118 CysA ABC-type sulfate/ 99.7 4.1E-19 8.9E-24 124.2 0.8 63 8-70 2-64 (345)
230 PRK14245 phosphate ABC transpo 99.7 2.9E-19 6.3E-24 120.2 -0.0 66 8-73 3-73 (250)
231 PRK14255 phosphate ABC transpo 99.7 3E-19 6.5E-24 120.1 0.0 66 8-73 5-75 (252)
232 TIGR03796 NHPM_micro_ABC1 NHPM 99.7 3.6E-19 7.8E-24 133.9 0.4 67 8-74 477-545 (710)
233 PRK11308 dppF dipeptide transp 99.7 3.3E-19 7.1E-24 125.0 0.1 65 9-73 6-80 (327)
234 PRK11022 dppD dipeptide transp 99.7 3.2E-19 7E-24 124.9 -0.0 65 9-73 4-76 (326)
235 PRK15093 antimicrobial peptide 99.7 3.3E-19 7.2E-24 124.9 -0.0 65 9-73 4-76 (330)
236 PRK11176 lipid transporter ATP 99.7 3.8E-19 8.3E-24 131.0 0.3 67 8-74 341-409 (582)
237 cd03222 ABC_RNaseL_inhibitor T 99.7 2.7E-19 5.8E-24 116.6 -0.7 59 13-72 5-63 (177)
238 PRK14263 phosphate ABC transpo 99.7 4.2E-19 9E-24 120.7 0.2 65 9-73 9-78 (261)
239 cd03234 ABCG_White The White s 99.7 5.2E-19 1.1E-23 117.5 0.6 63 10-72 5-74 (226)
240 PRK14266 phosphate ABC transpo 99.7 4.3E-19 9.2E-24 119.3 0.2 65 9-73 4-73 (250)
241 PRK10938 putative molybdenum t 99.7 5.5E-19 1.2E-23 128.3 0.7 65 8-72 260-325 (490)
242 cd00267 ABC_ATPase ABC (ATP-bi 99.7 5.8E-19 1.3E-23 111.6 0.5 62 12-73 3-64 (157)
243 COG1134 TagH ABC-type polysacc 99.7 6.4E-19 1.4E-23 119.7 0.7 52 19-70 38-89 (249)
244 PRK14264 phosphate ABC transpo 99.7 5.7E-19 1.2E-23 122.5 0.3 65 9-73 46-115 (305)
245 PRK11147 ABC transporter ATPas 99.7 5.3E-19 1.2E-23 132.3 0.2 62 9-70 4-65 (635)
246 TIGR02857 CydD thiol reductant 99.7 6.9E-19 1.5E-23 128.6 0.6 67 8-74 320-388 (529)
247 COG1117 PstB ABC-type phosphat 99.7 4.5E-19 9.8E-24 119.3 -0.5 69 7-75 6-79 (253)
248 COG1132 MdlB ABC-type multidru 99.7 7.2E-19 1.6E-23 129.6 0.4 68 7-74 327-395 (567)
249 PRK10790 putative multidrug tr 99.7 7.1E-19 1.5E-23 130.0 0.4 67 8-74 340-407 (592)
250 PRK11819 putative ABC transpor 99.7 6.4E-19 1.4E-23 130.1 0.1 62 8-69 6-68 (556)
251 COG1122 CbiO ABC-type cobalt t 99.7 9.6E-19 2.1E-23 118.5 0.9 66 8-73 3-69 (235)
252 PRK13549 xylose transporter AT 99.7 1.2E-18 2.5E-23 127.3 1.2 65 9-73 260-328 (506)
253 PRK09700 D-allose transporter 99.7 1.3E-18 2.8E-23 127.0 1.5 63 9-73 266-328 (510)
254 PRK10522 multidrug transporter 99.7 7E-19 1.5E-23 129.4 0.0 67 8-74 322-389 (547)
255 TIGR02633 xylG D-xylose ABC tr 99.7 1.2E-18 2.6E-23 126.8 1.1 65 9-73 258-326 (500)
256 PRK11160 cysteine/glutathione 99.7 9.1E-19 2E-23 129.6 0.4 67 8-74 338-406 (574)
257 COG4619 ABC-type uncharacteriz 99.7 9.5E-19 2.1E-23 114.8 0.4 63 12-74 7-69 (223)
258 TIGR00958 3a01208 Conjugate Tr 99.7 8.6E-19 1.9E-23 132.4 0.1 67 8-74 478-547 (711)
259 cd03297 ABC_ModC_molybdenum_tr 99.7 1E-18 2.3E-23 115.1 0.5 58 13-73 5-62 (214)
260 PRK15064 ABC transporter ATP-b 99.7 9.3E-19 2E-23 128.3 0.1 63 8-70 319-381 (530)
261 cd03289 ABCC_CFTR2 The CFTR su 99.7 9.3E-19 2E-23 120.4 0.0 65 8-73 2-68 (275)
262 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.2E-18 2.6E-23 128.5 0.5 62 8-69 4-66 (552)
263 TIGR03375 type_I_sec_LssB type 99.7 1.1E-18 2.4E-23 131.1 0.3 67 8-74 463-531 (694)
264 PRK09473 oppD oligopeptide tra 99.7 9.4E-19 2E-23 122.8 -0.1 66 8-73 12-84 (330)
265 PRK11174 cysteine/glutathione 99.7 1.6E-18 3.5E-23 127.9 1.1 66 8-74 349-415 (588)
266 COG1119 ModF ABC-type molybden 99.7 1E-18 2.2E-23 118.9 -0.0 64 9-72 32-95 (257)
267 PF00005 ABC_tran: ABC transpo 99.7 7.5E-19 1.6E-23 108.2 -0.8 51 24-74 1-51 (137)
268 PRK15134 microcin C ABC transp 99.7 1.2E-18 2.5E-23 127.8 0.0 65 9-73 6-79 (529)
269 PRK10261 glutathione transport 99.7 1.3E-18 2.9E-23 130.0 0.3 65 9-73 314-389 (623)
270 COG4608 AppF ABC-type oligopep 99.7 1.7E-18 3.7E-23 118.9 0.4 54 21-74 26-79 (268)
271 PRK13657 cyclic beta-1,2-gluca 99.7 2E-18 4.3E-23 127.7 0.4 67 8-74 334-401 (588)
272 TIGR03269 met_CoM_red_A2 methy 99.7 2E-18 4.3E-23 126.3 0.3 59 10-68 2-62 (520)
273 PRK11147 ABC transporter ATPas 99.7 2.1E-18 4.5E-23 129.1 0.3 61 8-68 319-379 (635)
274 TIGR02142 modC_ABC molybdenum 99.7 2.1E-18 4.5E-23 121.9 0.2 59 13-73 4-62 (354)
275 PRK11144 modC molybdate transp 99.7 2.2E-18 4.8E-23 121.7 0.3 59 13-73 5-63 (352)
276 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 2.2E-18 4.7E-23 127.1 0.2 61 9-69 323-383 (552)
277 PRK10789 putative multidrug tr 99.7 2.5E-18 5.4E-23 127.0 0.5 66 8-73 313-380 (569)
278 TIGR01842 type_I_sec_PrtD type 99.7 2.4E-18 5.3E-23 126.4 0.4 67 8-74 316-384 (544)
279 PRK10636 putative ABC transpor 99.7 2.4E-18 5.1E-23 129.1 0.3 61 8-68 312-372 (638)
280 TIGR02203 MsbA_lipidA lipid A 99.7 2.3E-18 5E-23 126.4 0.3 66 8-73 330-397 (571)
281 PRK11819 putative ABC transpor 99.7 2.3E-18 4.9E-23 127.2 0.1 62 8-69 324-385 (556)
282 TIGR01192 chvA glucan exporter 99.7 2.9E-18 6.3E-23 127.2 0.7 67 8-74 334-401 (585)
283 TIGR01184 ntrCD nitrate transp 99.7 3.1E-18 6.6E-23 114.4 0.7 50 24-73 1-50 (230)
284 TIGR02204 MsbA_rel ABC transpo 99.7 2.6E-18 5.6E-23 126.4 0.3 66 8-73 337-405 (576)
285 TIGR01194 cyc_pep_trnsptr cycl 99.7 2.7E-18 5.8E-23 126.7 0.2 67 8-74 337-408 (555)
286 PRK15177 Vi polysaccharide exp 99.7 4.3E-18 9.4E-23 112.9 1.0 50 22-71 1-51 (213)
287 TIGR02770 nickel_nikD nickel i 99.7 3.9E-18 8.4E-23 113.7 0.7 51 23-73 1-55 (230)
288 TIGR03269 met_CoM_red_A2 methy 99.7 3.8E-18 8.3E-23 124.8 0.7 61 8-68 279-344 (520)
289 PRK10982 galactose/methyl gala 99.7 5.6E-18 1.2E-22 123.2 1.4 63 9-73 251-313 (491)
290 COG4525 TauB ABC-type taurine 99.7 3.6E-18 7.8E-23 114.2 0.2 62 12-73 7-70 (259)
291 TIGR01846 type_I_sec_HlyB type 99.7 3.8E-18 8.3E-23 128.3 0.4 67 8-74 455-523 (694)
292 TIGR03415 ABC_choXWV_ATP choli 99.7 3.6E-18 7.9E-23 122.2 0.1 59 12-70 28-86 (382)
293 PRK15134 microcin C ABC transp 99.7 3.7E-18 8.1E-23 125.1 0.2 64 9-73 276-350 (529)
294 PRK10261 glutathione transport 99.7 3.6E-18 7.8E-23 127.7 0.0 64 8-71 12-79 (623)
295 COG4586 ABC-type uncharacteriz 99.7 8.1E-18 1.7E-22 116.5 1.7 54 21-74 37-90 (325)
296 cd03291 ABCC_CFTR1 The CFTR su 99.7 5E-18 1.1E-22 117.1 0.5 60 8-69 39-98 (282)
297 KOG0058|consensus 99.7 5.5E-18 1.2E-22 127.7 0.3 67 8-74 465-534 (716)
298 COG4674 Uncharacterized ABC-ty 99.7 3.4E-17 7.4E-22 109.4 3.7 67 8-74 5-72 (249)
299 KOG0057|consensus 99.7 5.7E-18 1.2E-22 124.9 -0.0 66 8-74 351-417 (591)
300 PRK03695 vitamin B12-transport 99.7 8.6E-18 1.9E-22 113.4 0.7 50 23-73 11-60 (248)
301 PRK14257 phosphate ABC transpo 99.7 7.6E-18 1.7E-22 118.3 0.4 66 8-73 80-152 (329)
302 PRK13545 tagH teichoic acids e 99.7 1E-17 2.2E-22 124.0 0.5 64 8-71 21-87 (549)
303 cd03236 ABC_RNaseL_inhibitor_d 99.7 8.8E-18 1.9E-22 114.4 -0.1 53 13-66 5-58 (255)
304 PRK13546 teichoic acids export 99.7 1.4E-17 3.1E-22 113.8 0.8 52 19-70 35-86 (264)
305 COG0396 sufC Cysteine desulfur 99.7 1.2E-17 2.6E-22 113.1 0.1 66 9-74 4-72 (251)
306 COG1101 PhnK ABC-type uncharac 99.7 1.3E-17 2.8E-22 112.5 0.1 57 19-75 17-73 (263)
307 TIGR01257 rim_protein retinal- 99.7 1.3E-17 2.8E-22 136.7 -0.2 66 8-73 1937-2004(2272)
308 PRK11288 araG L-arabinose tran 99.6 2.4E-17 5.3E-22 120.2 1.1 52 22-73 267-318 (501)
309 COG4987 CydC ABC-type transpor 99.6 1.9E-17 4.2E-22 122.0 0.5 67 8-74 336-404 (573)
310 COG4988 CydD ABC-type transpor 99.6 2.4E-17 5.2E-22 121.9 0.8 64 11-74 323-387 (559)
311 PLN03232 ABC transporter C fam 99.6 2E-17 4.3E-22 132.7 0.2 67 8-74 1234-1302(1495)
312 PLN03130 ABC transporter C fam 99.6 2.3E-17 5E-22 133.1 0.4 67 8-74 1237-1305(1622)
313 PLN03211 ABC transporter G-25; 99.6 3.3E-17 7.1E-22 123.5 1.0 63 11-73 71-135 (659)
314 PRK10762 D-ribose transporter 99.6 3.6E-17 7.8E-22 119.3 0.7 52 22-73 266-317 (501)
315 PLN03073 ABC transporter F fam 99.6 3E-17 6.5E-22 124.7 0.3 62 8-69 508-570 (718)
316 COG0488 Uup ATPase components 99.6 3E-17 6.6E-22 121.4 0.2 62 8-69 3-64 (530)
317 PRK10535 macrolide transporter 99.6 3.8E-17 8.3E-22 122.7 0.3 66 9-74 5-74 (648)
318 COG4167 SapF ABC-type antimicr 99.6 5.1E-17 1.1E-21 108.2 0.9 53 21-73 26-78 (267)
319 TIGR00957 MRP_assoc_pro multi 99.6 4.3E-17 9.3E-22 131.0 0.5 67 8-74 1284-1352(1522)
320 PTZ00243 ABC transporter; Prov 99.6 4E-17 8.6E-22 131.4 0.3 67 8-74 1308-1376(1560)
321 PRK15439 autoinducer 2 ABC tra 99.6 6.4E-17 1.4E-21 118.4 1.2 51 23-73 278-328 (510)
322 PLN03073 ABC transporter F fam 99.6 5.1E-17 1.1E-21 123.5 0.7 66 6-71 175-243 (718)
323 TIGR01257 rim_protein retinal- 99.6 2.9E-17 6.2E-22 134.7 -0.7 66 8-73 928-995 (2272)
324 COG4615 PvdE ABC-type sideroph 99.6 6.6E-17 1.4E-21 116.8 1.1 69 6-74 320-389 (546)
325 PTZ00265 multidrug resistance 99.6 4.3E-17 9.3E-22 130.7 0.2 66 8-73 382-451 (1466)
326 KOG0055|consensus 99.6 5.7E-17 1.2E-21 127.4 0.8 67 8-74 350-419 (1228)
327 COG1123 ATPase components of v 99.6 7.8E-17 1.7E-21 119.1 1.1 51 21-71 304-354 (539)
328 PTZ00265 multidrug resistance 99.6 9.3E-17 2E-21 128.8 0.0 53 8-60 1165-1220(1466)
329 COG4598 HisP ABC-type histidin 99.6 1.4E-16 3E-21 105.8 0.4 67 8-74 6-72 (256)
330 cd03237 ABC_RNaseL_inhibitor_d 99.6 2.3E-16 4.9E-21 106.8 1.3 52 21-72 7-63 (246)
331 COG3840 ThiQ ABC-type thiamine 99.6 2.5E-16 5.4E-21 104.4 1.4 63 11-75 4-66 (231)
332 TIGR00954 3a01203 Peroxysomal 99.6 2.1E-16 4.6E-21 119.0 0.5 62 8-69 451-513 (659)
333 PRK13409 putative ATPase RIL; 99.6 1.5E-16 3.2E-21 118.8 -0.6 61 12-73 77-149 (590)
334 PRK13409 putative ATPase RIL; 99.6 2.8E-16 6.1E-21 117.3 0.1 59 9-68 341-399 (590)
335 COG4181 Predicted ABC-type tra 99.6 5.8E-16 1.3E-20 102.0 0.5 55 20-74 22-76 (228)
336 KOG0056|consensus 99.6 4.9E-16 1.1E-20 114.8 0.0 67 8-74 537-604 (790)
337 TIGR01271 CFTR_protein cystic 99.5 5.7E-16 1.2E-20 124.4 0.0 66 8-74 1217-1284(1490)
338 COG4107 PhnK ABC-type phosphon 99.5 1.1E-15 2.3E-20 101.3 0.9 63 8-70 6-68 (258)
339 TIGR03771 anch_rpt_ABC anchore 99.5 9.7E-16 2.1E-20 101.9 0.0 44 29-72 1-44 (223)
340 KOG0055|consensus 99.5 1.1E-15 2.3E-20 120.4 0.2 67 8-74 987-1056(1228)
341 TIGR00956 3a01205 Pleiotropic 99.5 1.3E-15 2.7E-20 122.0 -0.1 64 10-73 761-831 (1394)
342 cd03238 ABC_UvrA The excision 99.5 2E-15 4.4E-20 98.3 0.8 47 20-70 7-53 (176)
343 COG0488 Uup ATPase components 99.5 2.1E-15 4.6E-20 111.7 0.9 62 8-69 321-383 (530)
344 COG0444 DppD ABC-type dipeptid 99.5 1.2E-15 2.6E-20 106.9 -0.4 65 10-74 3-76 (316)
345 COG1123 ATPase components of v 99.5 3.5E-15 7.6E-20 110.4 1.0 54 21-74 22-79 (539)
346 TIGR00957 MRP_assoc_pro multi 99.5 4.2E-15 9E-20 119.7 0.6 62 8-69 636-699 (1522)
347 KOG0059|consensus 99.5 9.6E-15 2.1E-19 113.0 1.9 71 7-77 563-634 (885)
348 KOG0054|consensus 99.5 5.7E-15 1.2E-19 117.7 0.1 67 8-74 1138-1206(1381)
349 TIGR00955 3a01204 The Eye Pigm 99.5 8.3E-15 1.8E-19 109.6 0.8 55 19-73 36-93 (617)
350 COG4618 ArpD ABC-type protease 99.5 1E-14 2.2E-19 107.4 1.1 67 8-74 334-402 (580)
351 COG4175 ProV ABC-type proline/ 99.5 1.1E-14 2.5E-19 102.7 0.7 54 21-74 41-94 (386)
352 PLN03140 ABC transporter G fam 99.5 1.1E-14 2.4E-19 117.1 0.5 54 20-73 177-233 (1470)
353 TIGR00956 3a01205 Pleiotropic 99.4 2E-14 4.4E-19 115.1 0.4 55 19-73 72-130 (1394)
354 cd00820 PEPCK_HprK Phosphoenol 99.4 3.6E-14 7.9E-19 86.3 1.4 48 21-74 2-49 (107)
355 TIGR01271 CFTR_protein cystic 99.4 3.9E-14 8.5E-19 114.0 1.3 49 21-69 439-487 (1490)
356 PLN03130 ABC transporter C fam 99.4 3.2E-14 6.9E-19 115.2 0.3 62 8-69 614-679 (1622)
357 PLN03140 ABC transporter G fam 99.4 6.4E-14 1.4E-18 112.8 1.3 55 19-73 891-947 (1470)
358 COG4136 ABC-type uncharacteriz 99.4 5.5E-14 1.2E-18 91.3 0.7 64 10-73 4-70 (213)
359 COG4778 PhnL ABC-type phosphon 99.4 1.1E-13 2.3E-18 91.4 1.5 50 21-70 24-73 (235)
360 TIGR03238 dnd_assoc_3 dnd syst 99.4 7.7E-14 1.7E-18 102.5 0.7 52 21-74 19-71 (504)
361 PTZ00243 ABC transporter; Prov 99.4 9.9E-14 2.2E-18 112.1 1.1 52 17-68 669-720 (1560)
362 PLN03232 ABC transporter C fam 99.4 1.1E-13 2.3E-18 111.5 1.1 59 8-66 614-675 (1495)
363 COG4161 ArtP ABC-type arginine 99.4 1.2E-13 2.5E-18 90.8 1.0 63 9-71 3-65 (242)
364 COG5265 ATM1 ABC-type transpor 99.3 1.4E-13 3E-18 99.9 -0.8 67 8-74 262-329 (497)
365 COG4172 ABC-type uncharacteriz 99.2 2.3E-12 5.1E-17 93.6 0.8 53 21-74 300-352 (534)
366 cd03270 ABC_UvrA_I The excisio 99.2 2E-12 4.4E-17 86.4 0.4 35 17-51 4-38 (226)
367 KOG2355|consensus 99.2 5.7E-12 1.2E-16 85.4 1.6 64 8-71 13-77 (291)
368 KOG0061|consensus 99.2 3.5E-12 7.7E-17 95.9 0.4 52 20-71 42-96 (613)
369 cd03272 ABC_SMC3_euk Eukaryoti 99.2 6.5E-12 1.4E-16 83.9 0.4 35 16-55 10-44 (243)
370 KOG0927|consensus 99.1 8.6E-12 1.9E-16 92.6 0.5 63 8-70 389-452 (614)
371 TIGR01187 potA spermidine/putr 99.1 4.8E-12 1E-16 88.7 -1.2 35 39-73 1-35 (325)
372 COG4172 ABC-type uncharacteriz 99.1 9.7E-12 2.1E-16 90.4 -0.0 55 20-74 22-81 (534)
373 cd03278 ABC_SMC_barmotin Barmo 99.1 6.4E-12 1.4E-16 82.7 -1.1 47 25-72 14-69 (197)
374 COG4178 ABC-type uncharacteriz 99.1 1.5E-11 3.3E-16 92.3 0.4 61 8-68 392-453 (604)
375 COG4148 ModC ABC-type molybdat 99.1 2.2E-11 4.8E-16 85.2 1.0 49 26-74 16-64 (352)
376 COG4138 BtuD ABC-type cobalami 99.1 2.4E-11 5.1E-16 80.7 0.2 51 23-74 14-64 (248)
377 KOG0927|consensus 99.0 5.2E-11 1.1E-15 88.5 0.9 57 7-63 74-130 (614)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.0 4.2E-11 9.2E-16 79.7 -0.8 42 8-55 5-46 (212)
379 cd01130 VirB11-like_ATPase Typ 99.0 2.9E-11 6.3E-16 78.6 -1.6 48 22-69 13-60 (186)
380 KOG0060|consensus 98.9 2.3E-10 5E-15 85.7 1.4 48 20-67 447-494 (659)
381 KOG0064|consensus 98.9 2E-10 4.3E-15 85.8 0.6 48 20-67 494-541 (728)
382 KOG0066|consensus 98.9 1.5E-10 3.3E-15 85.5 -0.3 61 8-68 586-647 (807)
383 cd03279 ABC_sbcCD SbcCD and ot 98.9 3E-10 6.6E-15 75.1 1.0 47 7-57 4-51 (213)
384 KOG0054|consensus 98.9 2.8E-10 6E-15 91.4 0.9 62 9-70 519-583 (1381)
385 COG2401 ABC-type ATPase fused 98.9 3.1E-10 6.8E-15 83.0 0.3 49 20-68 395-451 (593)
386 cd03280 ABC_MutS2 MutS2 homolo 98.9 3.4E-10 7.4E-15 74.3 0.4 41 23-63 16-65 (200)
387 cd03283 ABC_MutS-like MutS-lik 98.9 3.1E-10 6.6E-15 75.0 0.1 37 20-58 13-49 (199)
388 KOG0062|consensus 98.9 1.6E-10 3.6E-15 85.5 -1.3 51 6-56 78-128 (582)
389 PRK07721 fliI flagellum-specif 98.9 3.6E-10 7.7E-15 82.5 0.1 52 20-72 145-196 (438)
390 PRK06002 fliI flagellum-specif 98.8 7.8E-10 1.7E-14 81.0 0.5 59 10-69 141-200 (450)
391 PRK07594 type III secretion sy 98.8 7E-10 1.5E-14 80.9 -0.0 52 19-71 141-192 (433)
392 cd03273 ABC_SMC2_euk Eukaryoti 98.8 4E-10 8.7E-15 76.1 -1.2 37 34-70 25-62 (251)
393 PRK07196 fliI flagellum-specif 98.8 9.3E-10 2E-14 80.3 0.5 42 20-62 142-183 (434)
394 TIGR02858 spore_III_AA stage I 98.8 8.2E-10 1.8E-14 76.2 -0.4 39 35-73 112-150 (270)
395 PRK09862 putative ATP-dependen 98.8 9.1E-10 2E-14 81.6 -0.4 61 13-73 189-249 (506)
396 cd01136 ATPase_flagellum-secre 98.8 1.1E-09 2.4E-14 77.4 -0.1 51 20-71 56-106 (326)
397 cd03282 ABC_MSH4_euk MutS4 hom 98.8 1.4E-09 3E-14 72.2 -0.1 39 19-57 14-52 (204)
398 cd03287 ABC_MSH3_euk MutS3 hom 98.8 1.7E-09 3.6E-14 72.8 0.2 48 21-68 18-66 (222)
399 PRK08149 ATP synthase SpaL; Va 98.7 2E-09 4.4E-14 78.4 0.2 53 20-73 138-193 (428)
400 PRK09099 type III secretion sy 98.7 1.5E-09 3.2E-14 79.4 -0.7 52 20-72 150-201 (441)
401 TIGR03498 FliI_clade3 flagella 98.7 1.5E-09 3.2E-14 78.9 -0.9 53 21-74 128-180 (418)
402 COG1245 Predicted ATPase, RNas 98.7 2.4E-09 5.3E-14 78.9 0.2 43 22-64 350-397 (591)
403 cd03243 ABC_MutS_homologs The 98.7 1.4E-09 3E-14 71.4 -1.3 32 25-56 20-51 (202)
404 cd03240 ABC_Rad50 The catalyti 98.7 2.9E-09 6.2E-14 70.4 0.3 38 28-66 17-58 (204)
405 TIGR03497 FliI_clade2 flagella 98.7 3.1E-09 6.7E-14 77.2 -0.4 54 20-74 124-177 (413)
406 TIGR02546 III_secr_ATP type II 98.7 3.1E-09 6.7E-14 77.3 -0.6 51 20-71 132-182 (422)
407 COG3845 ABC-type uncharacteriz 98.7 6.8E-09 1.5E-13 76.5 1.0 63 10-72 259-322 (501)
408 PRK00300 gmk guanylate kinase; 98.6 3.9E-09 8.4E-14 68.8 -0.6 28 32-59 3-30 (205)
409 TIGR01026 fliI_yscN ATPase Fli 98.6 4.1E-09 8.9E-14 77.0 -0.6 51 20-71 150-200 (440)
410 TIGR00235 udk uridine kinase. 98.6 4.3E-09 9.3E-14 69.3 -0.6 29 32-60 4-32 (207)
411 TIGR02788 VirB11 P-type DNA tr 98.6 3.9E-09 8.5E-14 73.6 -1.3 42 27-68 137-178 (308)
412 PRK10078 ribose 1,5-bisphospho 98.6 6.1E-09 1.3E-13 67.6 -0.4 35 34-71 2-36 (186)
413 PRK09270 nucleoside triphospha 98.6 5.3E-09 1.1E-13 69.9 -0.9 35 31-65 30-64 (229)
414 PRK09825 idnK D-gluconate kina 98.6 6.4E-09 1.4E-13 67.5 -0.6 35 33-71 2-36 (176)
415 PRK00635 excinuclease ABC subu 98.6 1.1E-08 2.4E-13 84.1 0.5 53 13-69 940-992 (1809)
416 KOG0065|consensus 98.6 7.1E-09 1.5E-13 83.0 -0.6 55 19-73 802-858 (1391)
417 TIGR03496 FliI_clade1 flagella 98.6 7.1E-09 1.5E-13 75.2 -0.9 51 20-71 124-174 (411)
418 PF13555 AAA_29: P-loop contai 98.6 5.2E-09 1.1E-13 58.0 -1.4 38 25-62 13-51 (62)
419 PRK07960 fliI flagellum-specif 98.6 1.1E-08 2.4E-13 75.0 -0.3 52 22-74 164-218 (455)
420 PRK06793 fliI flagellum-specif 98.5 1E-08 2.2E-13 74.8 -0.7 52 21-73 144-195 (432)
421 TIGR00554 panK_bact pantothena 98.5 1.5E-08 3.2E-13 70.7 -0.3 40 32-71 60-101 (290)
422 cd03271 ABC_UvrA_II The excisi 98.5 1.9E-08 4.1E-13 69.2 0.3 34 21-54 8-41 (261)
423 PRK05922 type III secretion sy 98.5 2E-08 4.4E-13 73.4 0.4 50 21-71 145-194 (434)
424 cd03284 ABC_MutS1 MutS1 homolo 98.5 1.6E-08 3.4E-13 67.5 -0.2 36 20-56 17-52 (216)
425 COG1129 MglA ABC-type sugar tr 98.5 2E-08 4.3E-13 74.4 0.3 51 23-73 274-324 (500)
426 cd03275 ABC_SMC1_euk Eukaryoti 98.5 1.6E-08 3.4E-13 68.3 -0.7 33 35-67 23-55 (247)
427 PRK08472 fliI flagellum-specif 98.5 1.1E-08 2.5E-13 74.6 -1.5 53 20-73 144-196 (434)
428 TIGR00368 Mg chelatase-related 98.5 2E-08 4.3E-13 74.4 -0.4 56 18-73 195-250 (499)
429 PLN02796 D-glycerate 3-kinase 98.5 6.2E-09 1.3E-13 74.2 -3.1 52 21-72 79-141 (347)
430 PRK05688 fliI flagellum-specif 98.5 1.9E-08 4.1E-13 73.8 -0.7 41 20-61 155-195 (451)
431 COG4170 SapD ABC-type antimicr 98.5 4E-08 8.6E-13 67.3 0.7 56 3-59 3-58 (330)
432 PRK06315 type III secretion sy 98.5 5.4E-08 1.2E-12 71.3 1.1 48 21-69 152-200 (442)
433 cd03285 ABC_MSH2_euk MutS2 hom 98.4 4.3E-08 9.4E-13 65.7 0.4 37 19-55 15-51 (222)
434 PRK08972 fliI flagellum-specif 98.4 3.2E-08 6.9E-13 72.5 -0.3 40 21-61 150-189 (444)
435 PRK06995 flhF flagellar biosyn 98.4 2.2E-08 4.9E-13 73.9 -1.4 42 23-64 245-286 (484)
436 TIGR00630 uvra excinuclease AB 98.4 5.3E-08 1.2E-12 76.4 0.5 31 22-52 621-651 (924)
437 TIGR00767 rho transcription te 98.4 9.8E-08 2.1E-12 69.4 1.1 53 8-60 130-194 (415)
438 PRK10416 signal recognition pa 98.4 4.8E-08 1.1E-12 68.8 -0.5 42 32-73 112-153 (318)
439 PRK01889 GTPase RsgA; Reviewed 98.4 2.2E-08 4.9E-13 71.2 -2.2 48 23-70 184-231 (356)
440 PRK04863 mukB cell division pr 98.4 8.5E-08 1.8E-12 78.1 0.8 47 24-71 18-64 (1486)
441 PRK06936 type III secretion sy 98.4 6.2E-08 1.4E-12 70.9 -0.1 42 20-62 149-190 (439)
442 PRK00635 excinuclease ABC subu 98.4 9.7E-08 2.1E-12 78.7 0.6 31 22-52 609-639 (1809)
443 TIGR02322 phosphon_PhnN phosph 98.4 7.5E-08 1.6E-12 61.7 -0.0 33 34-67 1-33 (179)
444 cd02025 PanK Pantothenate kina 98.4 5E-08 1.1E-12 65.3 -0.9 32 36-67 1-34 (220)
445 cd00879 Sar1 Sar1 subfamily. 98.4 4E-08 8.7E-13 62.9 -1.4 33 23-56 9-41 (190)
446 PRK14723 flhF flagellar biosyn 98.3 6.1E-08 1.3E-12 74.8 -0.7 48 22-69 173-222 (767)
447 PRK13477 bifunctional pantoate 98.3 9E-08 1.9E-12 71.2 0.1 52 15-67 266-320 (512)
448 cd02023 UMPK Uridine monophosp 98.3 7.1E-08 1.5E-12 62.8 -0.6 31 36-68 1-31 (198)
449 PRK06820 type III secretion sy 98.3 1.5E-07 3.3E-12 68.9 0.7 50 20-70 150-199 (440)
450 cd02026 PRK Phosphoribulokinas 98.3 7.6E-08 1.7E-12 66.4 -1.2 32 36-67 1-32 (273)
451 PF13476 AAA_23: AAA domain; P 98.3 1.1E-07 2.5E-12 60.6 -0.3 35 23-58 9-43 (202)
452 cd03281 ABC_MSH5_euk MutS5 hom 98.3 1.4E-07 3.1E-12 62.8 -0.0 34 22-55 17-50 (213)
453 TIGR00606 rad50 rad50. This fa 98.3 1.9E-07 4.1E-12 75.2 0.5 38 35-72 29-71 (1311)
454 PRK00349 uvrA excinuclease ABC 98.3 2E-07 4.2E-12 73.4 0.5 33 22-54 623-655 (943)
455 cd04155 Arl3 Arl3 subfamily. 98.3 1.6E-07 3.5E-12 59.0 -0.2 36 35-70 15-58 (173)
456 TIGR03263 guanyl_kin guanylate 98.3 1.1E-07 2.4E-12 60.7 -1.0 26 34-59 1-26 (180)
457 cd03276 ABC_SMC6_euk Eukaryoti 98.2 1.9E-07 4.1E-12 61.5 -0.1 33 23-56 11-43 (198)
458 TIGR01069 mutS2 MutS2 family p 98.2 1.4E-07 3.1E-12 72.9 -1.1 44 20-63 302-352 (771)
459 PRK05480 uridine/cytidine kina 98.2 2.4E-07 5.1E-12 60.9 0.1 27 32-58 4-30 (209)
460 PRK03846 adenylylsulfate kinas 98.2 1.6E-07 3.5E-12 61.4 -0.8 42 32-73 22-64 (198)
461 cd01854 YjeQ_engC YjeQ/EngC. 98.2 1.8E-07 3.8E-12 64.8 -0.7 42 25-67 153-194 (287)
462 KOG0066|consensus 98.2 3.9E-07 8.5E-12 67.8 0.8 67 6-72 262-330 (807)
463 cd04159 Arl10_like Arl10-like 98.2 2.6E-07 5.6E-12 56.3 -0.3 21 37-57 2-22 (159)
464 PRK00098 GTPase RsgA; Reviewed 98.2 3.2E-07 6.9E-12 63.8 -0.1 35 33-67 163-197 (298)
465 cd03286 ABC_MSH6_euk MutS6 hom 98.2 3.5E-07 7.7E-12 61.4 0.0 38 20-57 16-53 (218)
466 TIGR02524 dot_icm_DotB Dot/Icm 98.1 4.5E-07 9.7E-12 64.8 -0.4 28 32-59 132-159 (358)
467 TIGR00750 lao LAO/AO transport 98.1 3.6E-07 7.8E-12 63.5 -0.9 40 21-60 21-60 (300)
468 TIGR01360 aden_kin_iso1 adenyl 98.1 2.2E-07 4.8E-12 59.4 -1.9 34 34-67 3-39 (188)
469 PF13304 AAA_21: AAA domain; P 98.1 5.9E-07 1.3E-11 57.4 0.0 22 37-58 2-23 (303)
470 PRK14721 flhF flagellar biosyn 98.1 4E-07 8.6E-12 66.4 -1.1 27 31-57 188-214 (420)
471 cd04104 p47_IIGP_like p47 (47- 98.1 4.9E-07 1.1E-11 59.1 -0.6 33 36-68 3-35 (197)
472 PRK08533 flagellar accessory p 98.1 5.7E-07 1.2E-11 60.6 -0.5 40 30-69 20-60 (230)
473 PTZ00132 GTP-binding nuclear p 98.1 7.1E-07 1.5E-11 58.6 -0.1 25 36-60 11-36 (215)
474 KOG0065|consensus 98.1 1E-06 2.2E-11 71.1 0.8 54 21-74 128-184 (1391)
475 PRK08927 fliI flagellum-specif 98.1 7.4E-07 1.6E-11 65.4 -0.1 37 26-62 150-186 (442)
476 COG1245 Predicted ATPase, RNas 98.1 7.9E-07 1.7E-11 65.9 -0.0 51 14-65 80-131 (591)
477 PRK00889 adenylylsulfate kinas 98.1 5.8E-07 1.3E-11 57.5 -0.7 38 32-69 2-40 (175)
478 TIGR03185 DNA_S_dndD DNA sulfu 98.0 9E-07 1.9E-11 67.1 -0.3 45 6-54 3-48 (650)
479 PLN02318 phosphoribulokinase/u 98.0 7.3E-07 1.6E-11 67.7 -0.8 36 35-71 66-101 (656)
480 PRK14722 flhF flagellar biosyn 98.0 6.4E-07 1.4E-11 64.5 -1.2 38 22-59 125-162 (374)
481 PRK13851 type IV secretion sys 98.0 8.7E-07 1.9E-11 63.1 -0.6 39 30-68 158-196 (344)
482 cd01131 PilT Pilus retraction 98.0 8.8E-07 1.9E-11 58.2 -0.5 36 36-71 3-39 (198)
483 PLN03046 D-glycerate 3-kinase; 98.0 6.3E-07 1.4E-11 65.8 -1.4 38 35-72 213-253 (460)
484 cd01876 YihA_EngB The YihA (En 98.0 8.1E-07 1.8E-11 54.5 -0.7 28 37-64 2-31 (170)
485 PRK15494 era GTPase Era; Provi 98.0 1.2E-06 2.6E-11 61.9 -0.0 50 8-57 18-75 (339)
486 PRK05541 adenylylsulfate kinas 98.0 6.5E-07 1.4E-11 57.3 -1.4 42 31-72 4-46 (176)
487 PRK09183 transposase/IS protei 98.0 6.9E-07 1.5E-11 61.2 -1.4 44 23-67 92-135 (259)
488 cd03227 ABC_Class2 ABC-type Cl 98.0 1.2E-06 2.6E-11 55.8 -0.2 34 25-58 12-45 (162)
489 PRK10246 exonuclease subunit S 98.0 1.3E-06 2.7E-11 69.4 -0.4 32 26-57 19-53 (1047)
490 TIGR02168 SMC_prok_B chromosom 98.0 1.5E-06 3.3E-11 67.7 0.0 30 29-59 19-51 (1179)
491 smart00382 AAA ATPases associa 98.0 1.3E-06 2.9E-11 51.5 -0.2 35 34-68 2-37 (148)
492 KOG0063|consensus 98.0 2.6E-06 5.6E-11 63.0 1.2 58 16-73 343-412 (592)
493 TIGR00101 ureG urease accessor 98.0 1.4E-06 3.1E-11 57.5 -0.3 35 36-71 3-37 (199)
494 PLN02165 adenylate isopentenyl 98.0 1.2E-06 2.5E-11 62.4 -0.8 42 32-73 41-86 (334)
495 PF03193 DUF258: Protein of un 98.0 9.4E-07 2E-11 57.2 -1.2 43 23-66 25-67 (161)
496 PRK00349 uvrA excinuclease ABC 97.9 3E-06 6.5E-11 66.9 1.1 29 23-51 15-43 (943)
497 cd01128 rho_factor Transcripti 97.9 2.4E-06 5.1E-11 58.5 0.4 37 27-63 9-45 (249)
498 TIGR00630 uvra excinuclease AB 97.9 3.2E-06 6.9E-11 66.7 1.1 29 23-51 11-39 (924)
499 COG3950 Predicted ATP-binding 97.9 1.6E-06 3.4E-11 62.5 -0.6 51 22-72 12-63 (440)
500 TIGR03015 pepcterm_ATPase puta 97.9 4.4E-07 9.6E-12 61.1 -3.2 40 21-60 29-69 (269)
No 1
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.87 E-value=8.5e-24 Score=144.64 Aligned_cols=67 Identities=36% Similarity=0.663 Sum_probs=63.2
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|+++++++++||++++|++++|+||||||||||+|+|+|+++|.+|+|+++|+++.+
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~ 68 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIAS 68 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhh
Confidence 3567888999999999999999999999999999999999999999999999999999999998765
No 2
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.8e-22 Score=136.93 Aligned_cols=67 Identities=37% Similarity=0.549 Sum_probs=63.0
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~~ 75 (80)
++.++++++|++-.+++++||++++||+++|||||||||||++++|+|+++|++|+|.++|+++...
T Consensus 5 L~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l 71 (250)
T COG0411 5 LEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGL 71 (250)
T ss_pred eeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCC
Confidence 4567889999999999999999999999999999999999999999999999999999999987653
No 3
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.84 E-value=1.9e-22 Score=142.91 Aligned_cols=67 Identities=31% Similarity=0.527 Sum_probs=63.4
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++++++++.|++..+++|+||+|++||+++|+|||||||||+||+|+|+..|++|+|.++|+++..
T Consensus 5 ~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~ 71 (352)
T COG3842 5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD 71 (352)
T ss_pred eEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 4677888999999999999999999999999999999999999999999999999999999998765
No 4
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.7e-22 Score=137.00 Aligned_cols=66 Identities=35% Similarity=0.652 Sum_probs=60.8
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|++.++|+|+||++++|++++|+||||||||||+|++.|+++|.+|+|.+.+.++.
T Consensus 4 ~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~ 69 (254)
T COG1121 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVR 69 (254)
T ss_pred EEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccc
Confidence 467788899998668999999999999999999999999999999999999999999999987654
No 5
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=4.8e-22 Score=135.08 Aligned_cols=64 Identities=25% Similarity=0.497 Sum_probs=60.2
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
++++++++.|+...+|+++||+|++||+++|+|||||||||||++++|+.+|++|+|.++|+++
T Consensus 4 l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v 67 (248)
T COG1116 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV 67 (248)
T ss_pred EEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc
Confidence 4566778889989999999999999999999999999999999999999999999999999876
No 6
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=4.7e-22 Score=133.50 Aligned_cols=66 Identities=26% Similarity=0.450 Sum_probs=61.9
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++.++|++..+|+++|++|++||+++|+||||||||||+|||++|.+|++|+|.++|+++.
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~ 67 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVG 67 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEecc
Confidence 356788899999999999999999999999999999999999999999999999999999997654
No 7
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.83 E-value=5.5e-22 Score=139.94 Aligned_cols=67 Identities=24% Similarity=0.464 Sum_probs=62.1
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++++++++.|++..+++++||+|++||+++|+||||||||||||+|+|+.+|++|+|+++|+++.+
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~ 69 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD 69 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 4567788999988669999999999999999999999999999999999999999999999998765
No 8
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=6.4e-22 Score=131.97 Aligned_cols=64 Identities=23% Similarity=0.529 Sum_probs=59.1
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.++++.|+++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~ 65 (235)
T cd03261 2 ELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDIS 65 (235)
T ss_pred eEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 4567788888888999999999999999999999999999999999999999999999997754
No 9
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=6.8e-22 Score=130.09 Aligned_cols=64 Identities=28% Similarity=0.506 Sum_probs=59.1
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++.|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~ 65 (213)
T cd03259 2 ELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVT 65 (213)
T ss_pred eeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcC
Confidence 4567788888888999999999999999999999999999999999999999999999998764
No 10
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=1.5e-21 Score=133.42 Aligned_cols=67 Identities=43% Similarity=0.647 Sum_probs=63.2
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.+++++++++|+++.+++++||++++|+++|++|+|||||||++|+|.|+++|++|+|.|+|.++..
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~ 68 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ 68 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh
Confidence 4577888999999999999999999999999999999999999999999999999999999988654
No 11
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.83 E-value=7.2e-22 Score=130.21 Aligned_cols=64 Identities=28% Similarity=0.473 Sum_probs=58.3
Q ss_pred ccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++.|++ +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~ 69 (218)
T cd03255 2 ELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDIS 69 (218)
T ss_pred eEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehh
Confidence 45677788865 68999999999999999999999999999999999999999999999998764
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.83 E-value=1.2e-21 Score=134.53 Aligned_cols=66 Identities=35% Similarity=0.572 Sum_probs=63.0
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
++..++++.|+++.+++++||+|++||+++++|||||||||++|+|+++++|++|+|+++|+++.+
T Consensus 2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~ 67 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISD 67 (309)
T ss_pred ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeeccc
Confidence 567788999999999999999999999999999999999999999999999999999999999875
No 13
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.82 E-value=1.4e-21 Score=128.95 Aligned_cols=64 Identities=33% Similarity=0.448 Sum_probs=59.1
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++.|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 65 (222)
T cd03224 2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT 65 (222)
T ss_pred EEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcC
Confidence 4567788888888999999999999999999999999999999999999999999999997653
No 14
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.82 E-value=1.4e-21 Score=128.96 Aligned_cols=64 Identities=58% Similarity=0.854 Sum_probs=58.5
Q ss_pred ccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.++++.|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.
T Consensus 2 ~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (220)
T cd03263 2 QIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR 67 (220)
T ss_pred EEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence 45677788876 78999999999999999999999999999999999999999999999998764
No 15
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=9.6e-22 Score=136.17 Aligned_cols=67 Identities=45% Similarity=0.689 Sum_probs=62.2
Q ss_pred hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|+ ++.+|+++||+|++|+++||+||||||||||+++|+|+.+|++|+|.++|++...
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~ 71 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK 71 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCcc
Confidence 456688899999 6999999999999999999999999999999999999999999999999987654
No 16
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.82 E-value=8.2e-22 Score=136.89 Aligned_cols=67 Identities=43% Similarity=0.701 Sum_probs=62.6
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.+++.++++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|.++..
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~ 73 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS 73 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEeccc
Confidence 5778888999988899999999999999999999999999999999999999999999999987653
No 17
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.8e-21 Score=130.10 Aligned_cols=72 Identities=36% Similarity=0.499 Sum_probs=65.7
Q ss_pred hccccccCCCCCcc-ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccccccccC
Q psy7220 9 VDSHLETFPYDTKP-AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80 (80)
Q Consensus 9 ~~~~~~~~~~~~~~-vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~~~~~~~ 80 (80)
+++..++++|+... +++|+||++++|+++||+|+|||||||+||+|++++.|++|.|+++|.+..+..+++|
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHh
Confidence 46677889998866 9999999999999999999999999999999999999999999999999887776654
No 18
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.82 E-value=1e-21 Score=138.38 Aligned_cols=66 Identities=41% Similarity=0.687 Sum_probs=62.3
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 41 ~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~ 106 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVP 106 (340)
T ss_pred eEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECC
Confidence 477888899999989999999999999999999999999999999999999999999999998764
No 19
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.82 E-value=1.8e-21 Score=128.07 Aligned_cols=62 Identities=37% Similarity=0.630 Sum_probs=57.4
Q ss_pred cccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 11 SHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 11 ~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
++++++.|+++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 63 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPL 63 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccH
Confidence 45677888778899999999999999999999999999999999999999999999999765
No 20
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.6e-21 Score=128.08 Aligned_cols=64 Identities=42% Similarity=0.656 Sum_probs=58.7
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++.|+++.+++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (210)
T cd03269 2 EVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD 65 (210)
T ss_pred EEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchh
Confidence 4567777887788999999999999999999999999999999999999999999999998753
No 21
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.5e-21 Score=129.12 Aligned_cols=64 Identities=53% Similarity=0.699 Sum_probs=58.9
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++.|+++++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 65 (220)
T cd03265 2 EVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVV 65 (220)
T ss_pred EEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecC
Confidence 4667788888888999999999999999999999999999999999999999999999987653
No 22
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.82 E-value=1.7e-21 Score=128.12 Aligned_cols=64 Identities=31% Similarity=0.549 Sum_probs=59.1
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~ 65 (213)
T cd03301 2 ELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVT 65 (213)
T ss_pred EEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 4567788888888999999999999999999999999999999999999999999999998764
No 23
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.82 E-value=1.7e-21 Score=129.46 Aligned_cols=64 Identities=42% Similarity=0.644 Sum_probs=59.2
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.++++.|+++.+++++||++++|++++|+|+||||||||+++|+|+.+|++|+|+++|+++.
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 65 (232)
T cd03218 2 RAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT 65 (232)
T ss_pred eEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence 4567788888888999999999999999999999999999999999999999999999997653
No 24
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.81 E-value=1.9e-21 Score=129.21 Aligned_cols=64 Identities=30% Similarity=0.400 Sum_probs=59.2
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++.|+++++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (230)
T TIGR03410 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDIT 65 (230)
T ss_pred EEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence 4567788888888999999999999999999999999999999999999999999999987754
No 25
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.81 E-value=1.9e-21 Score=129.53 Aligned_cols=64 Identities=38% Similarity=0.599 Sum_probs=58.7
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++.|+++++++++||++++|++++|+||||||||||+++|+|+++|++|+|+++|+++.
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 65 (236)
T cd03219 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT 65 (236)
T ss_pred eeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECC
Confidence 4567778888778999999999999999999999999999999999999999999999998764
No 26
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.81 E-value=2.2e-21 Score=127.22 Aligned_cols=62 Identities=35% Similarity=0.527 Sum_probs=57.2
Q ss_pred cccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 11 SHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 11 ~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
++++++.|++ +++++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 64 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI 64 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEh
Confidence 4566777877 7899999999999999999999999999999999999999999999999775
No 27
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.81 E-value=2e-21 Score=127.77 Aligned_cols=65 Identities=31% Similarity=0.540 Sum_probs=58.6
Q ss_pred hccccccCCC-CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~-~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.| +++.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence 4556777777 4678999999999999999999999999999999999999999999999998764
No 28
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.8e-21 Score=130.24 Aligned_cols=65 Identities=25% Similarity=0.447 Sum_probs=59.4
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++++++++||++++|++++|+||||||||||+++|+|+.+|++|+|+++|.++.
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 45667788888888999999999999999999999999999999999999999999999997754
No 29
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=1.7e-20 Score=125.33 Aligned_cols=66 Identities=39% Similarity=0.632 Sum_probs=62.4
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+...++.+.|+.+++++++||++++||++|++|||||||||.|.++.|+.+|++|.|.++++++..
T Consensus 5 L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~ 70 (243)
T COG1137 5 LVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITK 70 (243)
T ss_pred EEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCccccc
Confidence 456788999999999999999999999999999999999999999999999999999999998764
No 30
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.81 E-value=2.3e-21 Score=126.90 Aligned_cols=65 Identities=37% Similarity=0.603 Sum_probs=59.8
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|+++.
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccc
Confidence 45667788888888999999999999999999999999999999999999999999999998764
No 31
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.5e-21 Score=129.14 Aligned_cols=64 Identities=31% Similarity=0.560 Sum_probs=58.8
Q ss_pred ccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.++++.|++ +++++++||++++|++++|+||||||||||+++|+|+++|++|+|+++|+++.
T Consensus 2 ~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 66 (241)
T cd03256 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDIN 66 (241)
T ss_pred EEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEecc
Confidence 45677888876 78999999999999999999999999999999999999999999999998764
No 32
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.81 E-value=2e-21 Score=127.62 Aligned_cols=64 Identities=19% Similarity=0.314 Sum_probs=58.9
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+.+++++.|+++++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (213)
T cd03262 2 EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT 65 (213)
T ss_pred EEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence 4567788888788999999999999999999999999999999999999999999999998763
No 33
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.81 E-value=2.5e-21 Score=128.08 Aligned_cols=65 Identities=29% Similarity=0.561 Sum_probs=58.4
Q ss_pred hccccccCCCCCc----cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTK----PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~----~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++ ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence 3456777777654 7999999999999999999999999999999999999999999999998764
No 34
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.81 E-value=2.3e-21 Score=123.98 Aligned_cols=65 Identities=37% Similarity=0.510 Sum_probs=59.7
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+.+++++.|+++++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 ~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~ 66 (163)
T cd03216 2 ELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSF 66 (163)
T ss_pred EEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCc
Confidence 45677888888889999999999999999999999999999999999999999999999987653
No 35
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.81 E-value=2.8e-21 Score=126.85 Aligned_cols=63 Identities=33% Similarity=0.633 Sum_probs=57.4
Q ss_pred cccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 11 SHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 11 ~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+.++++.|++ +.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 66 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLT 66 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcc
Confidence 4566777876 78999999999999999999999999999999999999999999999997654
No 36
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.7e-21 Score=128.73 Aligned_cols=65 Identities=29% Similarity=0.562 Sum_probs=59.3
Q ss_pred hccccccCCCCCc----cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTK----PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~----~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++ ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence 4566778888766 8999999999999999999999999999999999999999999999998764
No 37
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.4e-21 Score=128.18 Aligned_cols=64 Identities=30% Similarity=0.519 Sum_probs=58.1
Q ss_pred ccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.++++.|++ +++++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 69 (220)
T cd03293 2 EVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT 69 (220)
T ss_pred eEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc
Confidence 45677778876 68999999999999999999999999999999999999999999999997653
No 38
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.81 E-value=2.7e-21 Score=129.21 Aligned_cols=65 Identities=25% Similarity=0.477 Sum_probs=59.2
Q ss_pred hccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+ ++++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhh
Confidence 35667788887 778999999999999999999999999999999999999999999999997764
No 39
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.8e-21 Score=131.05 Aligned_cols=65 Identities=25% Similarity=0.418 Sum_probs=59.4
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++.+++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 45667788888788999999999999999999999999999999999999999999999997764
No 40
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.81 E-value=2.4e-21 Score=127.70 Aligned_cols=65 Identities=29% Similarity=0.518 Sum_probs=58.1
Q ss_pred hccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehh
Confidence 456677777754 46999999999999999999999999999999999999999999999998764
No 41
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.81 E-value=3.2e-21 Score=128.32 Aligned_cols=66 Identities=27% Similarity=0.387 Sum_probs=60.7
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|+++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 7 ~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 72 (225)
T PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDIS 72 (225)
T ss_pred eEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcC
Confidence 366778888888888999999999999999999999999999999999999999999999987653
No 42
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.81 E-value=3e-21 Score=126.66 Aligned_cols=64 Identities=42% Similarity=0.631 Sum_probs=59.1
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++.|+++++++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 65 (208)
T cd03268 2 KTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ 65 (208)
T ss_pred EEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCccc
Confidence 4567788887788999999999999999999999999999999999999999999999998764
No 43
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.8e-21 Score=124.72 Aligned_cols=64 Identities=27% Similarity=0.498 Sum_probs=58.6
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++.|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (178)
T cd03229 2 ELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT 65 (178)
T ss_pred EEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 4567777887788999999999999999999999999999999999999999999999997764
No 44
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.81 E-value=2.6e-21 Score=129.24 Aligned_cols=65 Identities=37% Similarity=0.596 Sum_probs=59.4
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+++++++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcc
Confidence 45667788888888999999999999999999999999999999999999999999999997764
No 45
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.81 E-value=2.9e-21 Score=126.15 Aligned_cols=64 Identities=25% Similarity=0.429 Sum_probs=58.9
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++.|+++.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (198)
T TIGR01189 2 AARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALA 65 (198)
T ss_pred EEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcc
Confidence 4567788888889999999999999999999999999999999999999999999999997753
No 46
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.81 E-value=3.7e-21 Score=126.84 Aligned_cols=65 Identities=42% Similarity=0.597 Sum_probs=58.9
Q ss_pred hccccccCCCCCc----cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTK----PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~----~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++..++++.|+++ ++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcc
Confidence 3556778888765 7999999999999999999999999999999999999999999999998764
No 47
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.81 E-value=3.9e-21 Score=129.95 Aligned_cols=64 Identities=25% Similarity=0.422 Sum_probs=60.2
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
.+++.++++.|+++.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|++
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 69 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD 69 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcc
Confidence 4777888888888889999999999999999999999999999999999999999999999987
No 48
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.81 E-value=3e-21 Score=128.07 Aligned_cols=64 Identities=27% Similarity=0.438 Sum_probs=59.2
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee-----ecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-----KPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~-----~~~~G~i~~~~~~i~ 73 (80)
+++++++.|+++++++++||++++||+++|+|+||||||||+++|+|+. +|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 70 (227)
T cd03260 2 ELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY 70 (227)
T ss_pred EEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhh
Confidence 4667788888888999999999999999999999999999999999999 999999999998764
No 49
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.81 E-value=2.2e-21 Score=134.20 Aligned_cols=65 Identities=45% Similarity=0.746 Sum_probs=60.3
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 5 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 69 (303)
T TIGR01288 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVP 69 (303)
T ss_pred EEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc
Confidence 56677888888888999999999999999999999999999999999999999999999997753
No 50
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.81 E-value=2.9e-21 Score=126.26 Aligned_cols=61 Identities=18% Similarity=0.388 Sum_probs=56.8
Q ss_pred ccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 12 ~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
+++++.|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 62 (206)
T TIGR03608 2 KNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKET 62 (206)
T ss_pred cceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence 4567778878899999999999999999999999999999999999999999999999874
No 51
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.81 E-value=3.1e-21 Score=126.62 Aligned_cols=65 Identities=28% Similarity=0.478 Sum_probs=59.4
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcc
Confidence 45667788888888999999999999999999999999999999999999999999999997754
No 52
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=4.4e-21 Score=130.69 Aligned_cols=64 Identities=25% Similarity=0.497 Sum_probs=59.5
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
+++.++++.|+++.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 65 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEc
Confidence 4566778888888899999999999999999999999999999999999999999999999876
No 53
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=4.8e-21 Score=129.16 Aligned_cols=68 Identities=34% Similarity=0.490 Sum_probs=63.5
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~~ 75 (80)
.+++.+++..|+...+|+++||++++||+++|+|+||+|||||+++|+|+.++.+|+|.|+|+++...
T Consensus 3 mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~ 70 (237)
T COG0410 3 MLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGL 70 (237)
T ss_pred ceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCC
Confidence 35677888999999999999999999999999999999999999999999999999999999998754
No 54
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=5.1e-21 Score=127.79 Aligned_cols=66 Identities=30% Similarity=0.437 Sum_probs=60.8
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++.+++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~ 70 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDIT 70 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecC
Confidence 466778888888888999999999999999999999999999999999999999999999998754
No 55
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.80 E-value=4.6e-21 Score=130.59 Aligned_cols=66 Identities=29% Similarity=0.470 Sum_probs=60.4
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++.+++++||+|++|++++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 72 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIP 72 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence 356677788888888999999999999999999999999999999999999999999999997754
No 56
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.80 E-value=5.3e-21 Score=129.94 Aligned_cols=68 Identities=22% Similarity=0.487 Sum_probs=64.6
Q ss_pred hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.-++++.+++.|+++.+++++||+|++||+++|+|+||+|||||+|++.|+++|++|+|.++|+++..
T Consensus 7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ 74 (263)
T COG1127 7 PLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQ 74 (263)
T ss_pred ceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhc
Confidence 46788899999999999999999999999999999999999999999999999999999999998764
No 57
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.8e-21 Score=128.16 Aligned_cols=65 Identities=37% Similarity=0.580 Sum_probs=59.4
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++.+++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 4 l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 55667778888788999999999999999999999999999999999999999999999997653
No 58
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=6.5e-21 Score=129.22 Aligned_cols=67 Identities=25% Similarity=0.495 Sum_probs=61.2
Q ss_pred hhccccccCCC-CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~-~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++++++++.| +++++|++|||+|++||+++|+|+||||||||||+|+|+.+|++|+|.++|.++..
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~ 70 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITK 70 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhc
Confidence 35667778888 88999999999999999999999999999999999999999999999999977653
No 59
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=4.7e-21 Score=127.80 Aligned_cols=65 Identities=26% Similarity=0.522 Sum_probs=58.6
Q ss_pred hccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|++ .++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~ 74 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMS 74 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence 566777777754 47999999999999999999999999999999999999999999999998764
No 60
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.80 E-value=4.2e-21 Score=125.91 Aligned_cols=64 Identities=27% Similarity=0.460 Sum_probs=59.0
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (201)
T cd03231 2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLD 65 (201)
T ss_pred EEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence 4567788888888999999999999999999999999999999999999999999999987753
No 61
>PRK10908 cell division protein FtsE; Provisional
Probab=99.80 E-value=4.6e-21 Score=126.94 Aligned_cols=65 Identities=28% Similarity=0.494 Sum_probs=58.5
Q ss_pred hccccccCCC-CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~-~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.| +++.+++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 3456677777 5678999999999999999999999999999999999999999999999998764
No 62
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.80 E-value=5.1e-21 Score=125.74 Aligned_cols=64 Identities=30% Similarity=0.405 Sum_probs=57.8
Q ss_pred ccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++.|++ +++++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~ 66 (214)
T cd03292 2 EFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVS 66 (214)
T ss_pred EEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcc
Confidence 45677778854 68999999999999999999999999999999999999999999999998764
No 63
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.7e-21 Score=128.58 Aligned_cols=65 Identities=25% Similarity=0.429 Sum_probs=58.9
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++.+++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 4 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 68 (241)
T PRK14250 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIK 68 (241)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhh
Confidence 44556677787788999999999999999999999999999999999999999999999998764
No 64
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.80 E-value=4.6e-21 Score=128.18 Aligned_cols=65 Identities=18% Similarity=0.356 Sum_probs=59.4
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+++++++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 35667778887788999999999999999999999999999999999999999999999998764
No 65
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=6e-21 Score=128.46 Aligned_cols=66 Identities=35% Similarity=0.477 Sum_probs=60.9
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 70 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIE 70 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECC
Confidence 366778888888889999999999999999999999999999999999999999999999998764
No 66
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.80 E-value=5.2e-21 Score=126.97 Aligned_cols=66 Identities=24% Similarity=0.406 Sum_probs=58.8
Q ss_pred hhccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~ 75 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLH 75 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcc
Confidence 3567777887864 35999999999999999999999999999999999999999999999997764
No 67
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.80 E-value=5.1e-21 Score=132.39 Aligned_cols=66 Identities=36% Similarity=0.599 Sum_probs=60.8
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+++.++++.|+++.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~ 68 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ 68 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc
Confidence 566777888888899999999999999999999999999999999999999999999999987643
No 68
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.80 E-value=6.6e-21 Score=127.42 Aligned_cols=65 Identities=29% Similarity=0.427 Sum_probs=59.7
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecC
Confidence 45677788888788999999999999999999999999999999999999999999999998764
No 69
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=7.1e-21 Score=127.55 Aligned_cols=64 Identities=39% Similarity=0.622 Sum_probs=58.6
Q ss_pred ccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.++++.|++ +.+++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 66 (242)
T cd03295 2 EFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIR 66 (242)
T ss_pred EEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcC
Confidence 45677788877 78999999999999999999999999999999999999999999999998754
No 70
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.80 E-value=6.2e-21 Score=125.97 Aligned_cols=64 Identities=27% Similarity=0.492 Sum_probs=57.4
Q ss_pred ccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.++++.|++ +++++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 3 ~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 3 KCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLS 70 (221)
T ss_pred EEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhh
Confidence 45667777754 47999999999999999999999999999999999999999999999998764
No 71
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=6e-21 Score=125.63 Aligned_cols=64 Identities=25% Similarity=0.427 Sum_probs=58.5
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
++++++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 66 (207)
T PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI 66 (207)
T ss_pred EEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeC
Confidence 4566677888778899999999999999999999999999999999999999999999998764
No 72
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.80 E-value=7.7e-21 Score=128.36 Aligned_cols=65 Identities=25% Similarity=0.467 Sum_probs=60.2
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+++.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcc
Confidence 45677888888889999999999999999999999999999999999999999999999997754
No 73
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=8.1e-21 Score=121.90 Aligned_cols=64 Identities=28% Similarity=0.540 Sum_probs=58.0
Q ss_pred ccccccCCCCCc--cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTK--PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~--~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++.|+++ .+++++||++++|++++|+||||||||||+++|+|+.+|++|+++++|+++.
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~ 67 (171)
T cd03228 2 EFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLR 67 (171)
T ss_pred EEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhh
Confidence 456677777765 7999999999999999999999999999999999999999999999997764
No 74
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=7.4e-21 Score=122.30 Aligned_cols=64 Identities=42% Similarity=0.691 Sum_probs=58.0
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+.+++++.|++.++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 65 (173)
T cd03230 2 EVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIK 65 (173)
T ss_pred EEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcc
Confidence 4566677777778999999999999999999999999999999999999999999999998764
No 75
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.80 E-value=6.5e-21 Score=127.24 Aligned_cols=64 Identities=23% Similarity=0.362 Sum_probs=58.2
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee--ecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~--~~~~G~i~~~~~~i~ 73 (80)
+++++++.|+++.+++++||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred eEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 4567788888888999999999999999999999999999999999995 789999999997653
No 76
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.80 E-value=7.5e-21 Score=128.06 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=59.1
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.++++.|+++++++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 2 RFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLY 65 (252)
T ss_pred EEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 4667788888788999999999999999999999999999999999999999999999998763
No 77
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.80 E-value=9.4e-21 Score=126.20 Aligned_cols=64 Identities=34% Similarity=0.453 Sum_probs=60.3
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
+.++++++.|+++++++++||+|++|++++|+|+||||||||+++|+|+.+|++|+|+++|+++
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 86 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS 86 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 6677888899999999999999999999999999999999999999999999999999998764
No 78
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.80 E-value=8.2e-21 Score=122.73 Aligned_cols=63 Identities=32% Similarity=0.586 Sum_probs=57.7
Q ss_pred cccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 11 SHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 11 ~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
..++++.|+++.+++++||++++|++++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~ 64 (180)
T cd03214 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA 64 (180)
T ss_pred eeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 456677787778999999999999999999999999999999999999999999999998764
No 79
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.79 E-value=8e-21 Score=128.75 Aligned_cols=65 Identities=25% Similarity=0.502 Sum_probs=59.6
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++.+++++||++++|++++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcc
Confidence 45677788888888999999999999999999999999999999999999999999999997653
No 80
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=8.2e-21 Score=128.99 Aligned_cols=66 Identities=26% Similarity=0.425 Sum_probs=60.7
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 11 ~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 76 (265)
T PRK10575 11 TFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLE 76 (265)
T ss_pred eEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehh
Confidence 367778888888888999999999999999999999999999999999999999999999997653
No 81
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.79 E-value=7.1e-21 Score=127.78 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=59.5
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcc
Confidence 55677788888788999999999999999999999999999999999999999999999987764
No 82
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.79 E-value=1.1e-20 Score=124.95 Aligned_cols=66 Identities=29% Similarity=0.488 Sum_probs=61.0
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 11 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~ 76 (214)
T PRK13543 11 LLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTAT 76 (214)
T ss_pred eEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEcc
Confidence 367788888888888999999999999999999999999999999999999999999999997654
No 83
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=9.1e-21 Score=126.89 Aligned_cols=64 Identities=25% Similarity=0.378 Sum_probs=58.9
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
++..++++.|+++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++
T Consensus 3 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 66 (242)
T PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66 (242)
T ss_pred EEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence 4556677888888899999999999999999999999999999999999999999999999865
No 84
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=9.5e-21 Score=127.87 Aligned_cols=65 Identities=29% Similarity=0.508 Sum_probs=59.3
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+++++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhH
Confidence 45666778888888999999999999999999999999999999999999999999999997653
No 85
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.79 E-value=9.8e-21 Score=136.06 Aligned_cols=66 Identities=27% Similarity=0.554 Sum_probs=60.8
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
++.+++++.|+++++|+++||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.+
T Consensus 4 L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~ 69 (402)
T PRK09536 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEA 69 (402)
T ss_pred EEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCc
Confidence 556777888888999999999999999999999999999999999999999999999999987653
No 86
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.79 E-value=9.8e-21 Score=128.84 Aligned_cols=66 Identities=20% Similarity=0.418 Sum_probs=61.3
Q ss_pred hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
..+++.++++.|+++.+++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++.++
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 76 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL 76 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH
Confidence 467788889999888899999999999999999999999999999999999999999999988654
No 87
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.1e-20 Score=132.92 Aligned_cols=65 Identities=29% Similarity=0.484 Sum_probs=58.7
Q ss_pred hccccccCCCC----CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYD----TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~----~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+ .+++++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 45667777776 467999999999999999999999999999999999999999999999998764
No 88
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1e-20 Score=128.49 Aligned_cols=67 Identities=19% Similarity=0.427 Sum_probs=61.5
Q ss_pred hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
..+++.++++.|+++.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 72 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQ 72 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhh
Confidence 4566778888888888999999999999999999999999999999999999999999999998753
No 89
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.79 E-value=1.5e-20 Score=121.24 Aligned_cols=64 Identities=28% Similarity=0.545 Sum_probs=57.1
Q ss_pred ccccccCCCCCc--cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTK--PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~--~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+.+++++.|.++ ++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 67 (178)
T cd03247 2 SINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVS 67 (178)
T ss_pred EEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHH
Confidence 455667777654 7999999999999999999999999999999999999999999999997653
No 90
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.1e-20 Score=124.15 Aligned_cols=63 Identities=35% Similarity=0.550 Sum_probs=57.9
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++.|+++++++++||++++| +++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 ~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 64 (211)
T cd03264 2 QLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVL 64 (211)
T ss_pred EEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccc
Confidence 4567788888788999999999999 99999999999999999999999999999999998764
No 91
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.79 E-value=1.1e-20 Score=126.94 Aligned_cols=65 Identities=20% Similarity=0.346 Sum_probs=59.4
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC-----CCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~-----~G~i~~~~~~i~ 73 (80)
++++++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|+++.
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcc
Confidence 45667788888888999999999999999999999999999999999999988 999999998764
No 92
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.79 E-value=1.1e-20 Score=133.79 Aligned_cols=66 Identities=29% Similarity=0.436 Sum_probs=61.4
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++.++++.|++..+|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~ 69 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT 69 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECC
Confidence 467778888898888999999999999999999999999999999999999999999999998764
No 93
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.79 E-value=1.5e-20 Score=126.54 Aligned_cols=63 Identities=27% Similarity=0.463 Sum_probs=58.6
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
+++.++++.|+++.+++++||+|++|++++|+|+||||||||+++|+|+.+|++|+|+++|.+
T Consensus 4 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 66 (253)
T TIGR02323 4 LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRS 66 (253)
T ss_pred EEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccc
Confidence 566777888887889999999999999999999999999999999999999999999999875
No 94
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.79 E-value=1.6e-20 Score=123.96 Aligned_cols=65 Identities=34% Similarity=0.616 Sum_probs=58.8
Q ss_pred hccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|++ +.+++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhH
Confidence 566777888865 57999999999999999999999999999999999999999999999997653
No 95
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.8e-20 Score=128.06 Aligned_cols=65 Identities=23% Similarity=0.462 Sum_probs=57.7
Q ss_pred hccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|++ +++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 445666777754 46999999999999999999999999999999999999999999999998764
No 96
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.8e-20 Score=124.72 Aligned_cols=64 Identities=28% Similarity=0.503 Sum_probs=57.7
Q ss_pred ccccccCCCCCc--cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTK--PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~--~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++.|+++ ++++++||++++|++++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 67 (234)
T cd03251 2 EFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVR 67 (234)
T ss_pred EEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhh
Confidence 456677777664 7999999999999999999999999999999999999999999999997654
No 97
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.3e-20 Score=133.29 Aligned_cols=66 Identities=24% Similarity=0.470 Sum_probs=61.2
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|++..+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~ 71 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT 71 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECC
Confidence 466777888888888999999999999999999999999999999999999999999999998764
No 98
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.78 E-value=2e-20 Score=129.40 Aligned_cols=57 Identities=49% Similarity=0.739 Sum_probs=53.5
Q ss_pred CCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 17 ~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 58 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVV 58 (302)
T ss_pred eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 467778999999999999999999999999999999999999999999999998764
No 99
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.7e-20 Score=124.46 Aligned_cols=66 Identities=32% Similarity=0.581 Sum_probs=59.5
Q ss_pred hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++.++++.|++ +.+++++||++++|++++|+||||||||||+++|+|+.+|++|+|+++|.++.
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 68 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIR 68 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHH
Confidence 3567778888864 57999999999999999999999999999999999999999999999997764
No 100
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.9e-20 Score=127.69 Aligned_cols=64 Identities=30% Similarity=0.476 Sum_probs=59.2
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
...++++.|+++++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~ 89 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIA 89 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcc
Confidence 4557788889899999999999999999999999999999999999999999999999998764
No 101
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.9e-20 Score=128.81 Aligned_cols=66 Identities=33% Similarity=0.546 Sum_probs=58.8
Q ss_pred hccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
++.+++++.|++ +++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 73 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD 73 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCC
Confidence 456677777754 479999999999999999999999999999999999999999999999987643
No 102
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.8e-20 Score=128.15 Aligned_cols=65 Identities=31% Similarity=0.487 Sum_probs=59.1
Q ss_pred hccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+ ..++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 5 l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 70 (274)
T PRK13647 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVN 70 (274)
T ss_pred EEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 56677788885 467999999999999999999999999999999999999999999999998764
No 103
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.78 E-value=2.3e-20 Score=120.01 Aligned_cols=64 Identities=28% Similarity=0.596 Sum_probs=57.4
Q ss_pred ccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+..++++.|++ .++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 ~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 67 (173)
T cd03246 2 EVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS 67 (173)
T ss_pred EEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcc
Confidence 45667777764 56999999999999999999999999999999999999999999999997764
No 104
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.1e-20 Score=127.81 Aligned_cols=65 Identities=28% Similarity=0.546 Sum_probs=58.5
Q ss_pred hccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+ ++.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECC
Confidence 45667788884 567999999999999999999999999999999999999999999999998764
No 105
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.7e-20 Score=127.93 Aligned_cols=66 Identities=30% Similarity=0.482 Sum_probs=60.1
Q ss_pred hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++..++++.|+ ++++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 72 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR 72 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhH
Confidence 367788888885 578999999999999999999999999999999999999999999999997653
No 106
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.2e-20 Score=126.77 Aligned_cols=66 Identities=29% Similarity=0.533 Sum_probs=59.0
Q ss_pred hccccccCCCCCcc----ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDTKP----AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~~~----vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
++++++++.|+.+. +++++||++.+||++||+|+||||||||.++|+|+.+|++|+|.++|.+...
T Consensus 4 l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~ 73 (252)
T COG1124 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAP 73 (252)
T ss_pred EEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCc
Confidence 45566677777766 9999999999999999999999999999999999999999999999976543
No 107
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.78 E-value=1.8e-20 Score=124.19 Aligned_cols=64 Identities=39% Similarity=0.632 Sum_probs=58.3
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.++++.|+++.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~ 65 (223)
T TIGR03740 2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT 65 (223)
T ss_pred EEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecc
Confidence 4566777887788999999999999999999999999999999999999999999999987653
No 108
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.8e-20 Score=133.13 Aligned_cols=65 Identities=25% Similarity=0.405 Sum_probs=60.3
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 4 l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~ 68 (369)
T PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMN 68 (369)
T ss_pred EEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 56777788888888999999999999999999999999999999999999999999999998764
No 109
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.3e-20 Score=128.36 Aligned_cols=65 Identities=26% Similarity=0.494 Sum_probs=58.3
Q ss_pred hccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|++ +.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 72 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHIT 72 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 456677777763 46999999999999999999999999999999999999999999999998763
No 110
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.3e-20 Score=127.69 Aligned_cols=65 Identities=34% Similarity=0.621 Sum_probs=58.2
Q ss_pred hccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++..++++.|+ .+.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.
T Consensus 4 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 44566777884 457999999999999999999999999999999999999999999999998764
No 111
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.3e-20 Score=128.24 Aligned_cols=67 Identities=22% Similarity=0.387 Sum_probs=60.5
Q ss_pred hhhccccccCCCCCc-----cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 7 QTVDSHLETFPYDTK-----PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 7 ~~~~~~~~~~~~~~~-----~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++++++++.|+++ ++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 76 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIP 76 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcc
Confidence 457788888888754 4999999999999999999999999999999999999999999999997753
No 112
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.78 E-value=3.1e-20 Score=120.55 Aligned_cols=56 Identities=32% Similarity=0.579 Sum_probs=52.2
Q ss_pred CCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 18 ~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
|+++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 57 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLD 57 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEcc
Confidence 45678999999999999999999999999999999999999999999999997763
No 113
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.78 E-value=2.1e-20 Score=132.23 Aligned_cols=65 Identities=25% Similarity=0.432 Sum_probs=60.1
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+++.+++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 3 L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 45667788888888999999999999999999999999999999999999999999999998764
No 114
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.9e-20 Score=132.64 Aligned_cols=65 Identities=25% Similarity=0.446 Sum_probs=59.9
Q ss_pred hccccccCCC-CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~-~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.| +++.+|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 4 l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECC
Confidence 5667778888 6788999999999999999999999999999999999999999999999998764
No 115
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.78 E-value=2e-20 Score=126.36 Aligned_cols=66 Identities=20% Similarity=0.360 Sum_probs=60.7
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 70 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTIN 70 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcc
Confidence 356777888888888999999999999999999999999999999999999999999999997763
No 116
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.8e-20 Score=126.88 Aligned_cols=69 Identities=16% Similarity=0.331 Sum_probs=61.9
Q ss_pred ehhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220 5 SLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 73 (80)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~ 73 (80)
+-..++++++++.|+++++++++||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.
T Consensus 10 ~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 10 APSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred CCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 3446778888999988889999999999999999999999999999999999986 47999999998763
No 117
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.7e-20 Score=126.69 Aligned_cols=67 Identities=27% Similarity=0.494 Sum_probs=60.5
Q ss_pred hhhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 7 QTVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 7 ~~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
..+++.++++.|++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~ 74 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAIT 74 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 35677888888865 45999999999999999999999999999999999999999999999998764
No 118
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.78 E-value=2.4e-20 Score=126.94 Aligned_cols=65 Identities=34% Similarity=0.593 Sum_probs=57.9
Q ss_pred hccccccCCCC---------CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYD---------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~---------~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+ .+++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence 55667777774 247999999999999999999999999999999999999999999999997764
No 119
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.2e-20 Score=124.74 Aligned_cols=66 Identities=24% Similarity=0.429 Sum_probs=62.3
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
++++++++.|+.+.+++++|++|++|.+++|+|||||||||||.+++++.++++|+|+++|+++..
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~ 67 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTS 67 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeeccc
Confidence 567788999999999999999999999999999999999999999999999999999999998754
No 120
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.4e-20 Score=128.18 Aligned_cols=65 Identities=22% Similarity=0.491 Sum_probs=58.0
Q ss_pred hccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|++ +++|+++||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|+++.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 456667777753 46999999999999999999999999999999999999999999999998764
No 121
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.78 E-value=2.2e-20 Score=126.91 Aligned_cols=65 Identities=29% Similarity=0.539 Sum_probs=57.5
Q ss_pred hccccccCCCC---------CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYD---------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~---------~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+ ++.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcc
Confidence 44566677664 367999999999999999999999999999999999999999999999998764
No 122
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.78 E-value=2.9e-20 Score=117.02 Aligned_cols=61 Identities=30% Similarity=0.491 Sum_probs=55.9
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
+..++++.|++.++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|+++++
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~ 62 (144)
T cd03221 2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST 62 (144)
T ss_pred EEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe
Confidence 4566777787778999999999999999999999999999999999999999999999874
No 123
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.78 E-value=3.1e-20 Score=123.83 Aligned_cols=64 Identities=27% Similarity=0.467 Sum_probs=57.2
Q ss_pred ccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.++++.|+ ++++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 ~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (237)
T cd03252 2 TFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLA 67 (237)
T ss_pred EEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehH
Confidence 4566777775 357999999999999999999999999999999999999999999999997653
No 124
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.3e-20 Score=125.58 Aligned_cols=65 Identities=15% Similarity=0.382 Sum_probs=59.0
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++++++++||++++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.
T Consensus 5 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred EEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 5667778888878899999999999999999999999999999999999987 4999999998764
No 125
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.78 E-value=2.5e-20 Score=131.60 Aligned_cols=66 Identities=27% Similarity=0.441 Sum_probs=58.4
Q ss_pred hccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
++++++++.|++ .++|+++||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~ 71 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTT 71 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence 456667777742 479999999999999999999999999999999999999999999999987753
No 126
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.8e-20 Score=128.13 Aligned_cols=65 Identities=23% Similarity=0.464 Sum_probs=58.7
Q ss_pred hccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.+++++.|++ +++|+++||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 556777777753 56999999999999999999999999999999999999999999999998764
No 127
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.3e-20 Score=125.63 Aligned_cols=67 Identities=21% Similarity=0.332 Sum_probs=59.7
Q ss_pred hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220 7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 73 (80)
Q Consensus 7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~ 73 (80)
+.+++.++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 76 (253)
T PRK14242 5 PKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76 (253)
T ss_pred cEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcc
Confidence 34667788888887889999999999999999999999999999999999864 57999999998764
No 128
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.77 E-value=3.1e-20 Score=124.40 Aligned_cols=65 Identities=22% Similarity=0.322 Sum_probs=58.7
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee--ecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~--~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++++++++||+|++|++++|+|+||||||||+++|+|+. +|++|+|+++|.++.
T Consensus 2 i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 45677788888888999999999999999999999999999999999995 699999999997763
No 129
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=3.9e-20 Score=126.16 Aligned_cols=66 Identities=35% Similarity=0.605 Sum_probs=59.9
Q ss_pred hhccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|+ ++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~ 74 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITIS 74 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC
Confidence 466778888884 468999999999999999999999999999999999999999999999998764
No 130
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4e-20 Score=134.92 Aligned_cols=66 Identities=30% Similarity=0.407 Sum_probs=61.1
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~ 70 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYN 70 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECC
Confidence 366778888898888999999999999999999999999999999999999999999999997764
No 131
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.77 E-value=3.6e-20 Score=123.61 Aligned_cols=64 Identities=28% Similarity=0.489 Sum_probs=56.8
Q ss_pred ccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.++++.|++ +++++++||++++|++++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 2 ~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 68 (238)
T cd03249 2 EFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIR 68 (238)
T ss_pred eEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehh
Confidence 45666777753 46999999999999999999999999999999999999999999999997654
No 132
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.77 E-value=4.5e-20 Score=120.86 Aligned_cols=60 Identities=25% Similarity=0.456 Sum_probs=54.8
Q ss_pred ccccccCCCCCc-----cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 10 DSHLETFPYDTK-----PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 10 ~~~~~~~~~~~~-----~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
+++++++.|+++ ++++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 ~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g 66 (204)
T cd03250 2 SVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG 66 (204)
T ss_pred EEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC
Confidence 456777777653 699999999999999999999999999999999999999999999987
No 133
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=3.6e-20 Score=127.15 Aligned_cols=65 Identities=32% Similarity=0.548 Sum_probs=59.8
Q ss_pred hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
.++++++++.|+ ++.+++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEEC
Confidence 366778888885 57899999999999999999999999999999999999999999999999876
No 134
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=3.9e-20 Score=123.15 Aligned_cols=64 Identities=28% Similarity=0.543 Sum_probs=57.6
Q ss_pred ccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+..++++.|+ ++.+++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 ~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~ 66 (236)
T cd03253 2 EFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR 66 (236)
T ss_pred EEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhh
Confidence 4566777775 467999999999999999999999999999999999999999999999997764
No 135
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=3.8e-20 Score=120.78 Aligned_cols=64 Identities=28% Similarity=0.473 Sum_probs=56.1
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.+++++.|+++.+++ +||++++||+++|+|+||||||||+++|+|+.+|++|++.++|.++.
T Consensus 2 l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccC
Confidence 34566677777666665 99999999999999999999999999999999999999999997753
No 136
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.77 E-value=3.4e-20 Score=122.76 Aligned_cols=64 Identities=23% Similarity=0.339 Sum_probs=57.4
Q ss_pred ccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.++++.|++ +.+++++||++++|++++|+|+||||||||+++|+|+++|++|+|+++|+++.
T Consensus 3 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 3 SIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhH
Confidence 45566777754 67999999999999999999999999999999999999999999999998764
No 137
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=4.1e-20 Score=126.76 Aligned_cols=65 Identities=31% Similarity=0.507 Sum_probs=59.1
Q ss_pred hccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|++ +++++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.
T Consensus 6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~ 72 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLS 72 (279)
T ss_pred EEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECC
Confidence 567777877754 57999999999999999999999999999999999999999999999998764
No 138
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=4.2e-20 Score=126.29 Aligned_cols=65 Identities=35% Similarity=0.630 Sum_probs=58.5
Q ss_pred hccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+ .+++++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|+++.
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECc
Confidence 45667777785 467999999999999999999999999999999999999999999999998763
No 139
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.77 E-value=3.3e-20 Score=121.71 Aligned_cols=65 Identities=25% Similarity=0.394 Sum_probs=58.4
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeece--eecCCCceeeeeccccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl--~~~~~G~i~~~~~~i~~ 74 (80)
+++++++.|+++.+++++||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|+++..
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~ 68 (200)
T cd03217 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68 (200)
T ss_pred eEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence 456777888778899999999999999999999999999999999999 47999999999987643
No 140
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.77 E-value=4.3e-20 Score=134.63 Aligned_cols=66 Identities=24% Similarity=0.363 Sum_probs=60.9
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++++++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~ 69 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVT 69 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 366778888898888999999999999999999999999999999999999999999999997753
No 141
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=3.5e-20 Score=123.67 Aligned_cols=64 Identities=31% Similarity=0.481 Sum_probs=59.1
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.++++.|+++++++++||++++|++++|+|+||||||||+++|+|+++|+.|+|+++|+++.
T Consensus 2 ~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 65 (232)
T cd03300 2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDIT 65 (232)
T ss_pred EEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence 4567788888888999999999999999999999999999999999999999999999998764
No 142
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.4e-20 Score=125.35 Aligned_cols=65 Identities=17% Similarity=0.321 Sum_probs=59.3
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeeccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSI 72 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i 72 (80)
.+++.++++.|+++++|+++||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|+++
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~ 73 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDL 73 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEec
Confidence 46678888888888899999999999999999999999999999999999874 699999999876
No 143
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=4e-20 Score=124.39 Aligned_cols=66 Identities=26% Similarity=0.511 Sum_probs=61.6
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
++..++++...++.+++++||++++||+++|+||||||||||++.|+|...|++|++.++|.++..
T Consensus 2 i~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~ 67 (259)
T COG4559 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNS 67 (259)
T ss_pred eeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhh
Confidence 456778888899999999999999999999999999999999999999999999999999988654
No 144
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.77 E-value=4.2e-20 Score=123.71 Aligned_cols=64 Identities=22% Similarity=0.407 Sum_probs=58.9
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.++++.|+++++++++||++.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~ 65 (237)
T TIGR00968 2 EIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDAT 65 (237)
T ss_pred EEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence 4567778888888999999999999999999999999999999999999999999999987764
No 145
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.77 E-value=3.6e-20 Score=126.95 Aligned_cols=65 Identities=23% Similarity=0.406 Sum_probs=59.5
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC--------CCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT--------SGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~--------~G~i~~~~~~i~ 73 (80)
++++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence 45677788888889999999999999999999999999999999999999998 899999997754
No 146
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.4e-20 Score=126.22 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=60.4
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+.+| ++|+|+++|+++.
T Consensus 19 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 19 KMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred eEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 56678888888888899999999999999999999999999999999999874 8999999998764
No 147
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=4.9e-20 Score=126.30 Aligned_cols=66 Identities=30% Similarity=0.582 Sum_probs=59.1
Q ss_pred hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++.++++.|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 72 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLT 72 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECC
Confidence 3566777887753 45999999999999999999999999999999999999999999999998764
No 148
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.77 E-value=4.4e-20 Score=121.89 Aligned_cols=65 Identities=25% Similarity=0.467 Sum_probs=58.4
Q ss_pred hccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+. +++++++||++++|++++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 69 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDIS 69 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhH
Confidence 456777887753 47999999999999999999999999999999999999999999999997754
No 149
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.77 E-value=3.5e-20 Score=131.59 Aligned_cols=68 Identities=21% Similarity=0.448 Sum_probs=63.4
Q ss_pred hhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC--Cceeeeecccc
Q psy7220 6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS--GNAYVMNHSIR 73 (80)
Q Consensus 6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~--G~i~~~~~~i~ 73 (80)
|..++++++++.|+++.+++++||+|++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~ 72 (362)
T TIGR03258 3 CGGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLT 72 (362)
T ss_pred ceEEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECC
Confidence 456788899999988889999999999999999999999999999999999999999 99999998764
No 150
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.8e-20 Score=126.18 Aligned_cols=66 Identities=23% Similarity=0.347 Sum_probs=60.2
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~ 73 (80)
.++++++++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 13 ~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 13 IISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred eEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4677888888988889999999999999999999999999999999999987 58999999997753
No 151
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.7e-20 Score=123.94 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=58.8
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee---cCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~---~~~G~i~~~~~~i~ 73 (80)
++++++++.|+++.+++++||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 3 ~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~ 70 (246)
T PRK14269 3 AKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVK 70 (246)
T ss_pred eeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecc
Confidence 456777888888889999999999999999999999999999999999974 68999999998764
No 152
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.77 E-value=4.8e-20 Score=124.21 Aligned_cols=64 Identities=25% Similarity=0.444 Sum_probs=55.8
Q ss_pred cccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 11 SHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 11 ~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
..++++.|+. ..+|+++||+|++||+++|+|||||||||||++|.|+..|++|.+.++|+++..
T Consensus 4 ~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~ 71 (226)
T COG1136 4 LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTK 71 (226)
T ss_pred EeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCc
Confidence 4455555532 479999999999999999999999999999999999999999999999987653
No 153
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4e-20 Score=124.26 Aligned_cols=65 Identities=17% Similarity=0.357 Sum_probs=58.0
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+| ++|+|+++|.++.
T Consensus 4 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred EEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECC
Confidence 4566667778778899999999999999999999999999999999999874 6999999998764
No 154
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.77 E-value=4.9e-20 Score=122.18 Aligned_cols=67 Identities=28% Similarity=0.463 Sum_probs=59.9
Q ss_pred hhhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 7 QTVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 7 ~~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
..++..++++.|++ ..+++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 79 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPIS 79 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchH
Confidence 35667778888864 36999999999999999999999999999999999999999999999998764
No 155
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.77 E-value=4.4e-20 Score=120.71 Aligned_cols=65 Identities=23% Similarity=0.312 Sum_probs=59.2
Q ss_pred hccccccCCCCC------ccccceeeeeeccceeeeeecccCCCceeEeeeeecee--ecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDT------KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~------~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~--~~~~G~i~~~~~~i~ 73 (80)
++++++++.|++ +++++++||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~ 76 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD 76 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCc
Confidence 566777888865 67999999999999999999999999999999999999 999999999998764
No 156
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.77 E-value=5.6e-20 Score=123.55 Aligned_cols=66 Identities=21% Similarity=0.375 Sum_probs=59.5
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeece--eecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl--~~~~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++.+|+++||++++||+++|+|+||||||||+++|+|+ ++|++|+|+++|.++.
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~ 74 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESIL 74 (252)
T ss_pred eEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcc
Confidence 36677788888878899999999999999999999999999999999998 5789999999987754
No 157
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=5.4e-20 Score=124.47 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=60.5
Q ss_pred hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220 7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 73 (80)
Q Consensus 7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~ 73 (80)
..+++.++++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|+++.
T Consensus 11 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred eeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 356778888888888899999999999999999999999999999999999875 7999999998763
No 158
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=7.1e-20 Score=125.43 Aligned_cols=65 Identities=28% Similarity=0.544 Sum_probs=57.8
Q ss_pred hccccccCCCCC------ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDT------KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~------~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|++ +++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 5 l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~ 75 (280)
T PRK13633 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTS 75 (280)
T ss_pred EEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecc
Confidence 455666777752 57999999999999999999999999999999999999999999999998764
No 159
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=8.7e-20 Score=120.46 Aligned_cols=70 Identities=26% Similarity=0.524 Sum_probs=63.9
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccccccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~~~~ 77 (80)
.++.++++...+.++++.++||.+.+||.+.|.||||||||||+|+|+|+.+|++|+|+|++..+...++
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~ 71 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE 71 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh
Confidence 3566788888899999999999999999999999999999999999999999999999999988776543
No 160
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.76 E-value=5.4e-20 Score=131.19 Aligned_cols=66 Identities=27% Similarity=0.493 Sum_probs=61.5
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++.++++.|++.++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~ 79 (375)
T PRK09452 14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT 79 (375)
T ss_pred eEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 366788888898888999999999999999999999999999999999999999999999998764
No 161
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=5.9e-20 Score=126.45 Aligned_cols=65 Identities=26% Similarity=0.486 Sum_probs=57.3
Q ss_pred hccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+. +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence 445666777753 25999999999999999999999999999999999999999999999998764
No 162
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=7.9e-20 Score=120.17 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=57.8
Q ss_pred hccccccCCCC----CccccceeeeeeccceeeeeecccCCCceeEeeeeeceee---cCCCceeeeecccc
Q psy7220 9 VDSHLETFPYD----TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~----~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~---~~~G~i~~~~~~i~ 73 (80)
+..+++++.|+ ++.+++++||++++|++++|+|+||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~ 75 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYK 75 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECc
Confidence 45567777774 4689999999999999999999999999999999999998 89999999998764
No 163
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.76 E-value=6.1e-20 Score=124.42 Aligned_cols=62 Identities=24% Similarity=0.434 Sum_probs=57.2
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
++++++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|.+++.
T Consensus 5 l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~ 66 (251)
T PRK09544 5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK 66 (251)
T ss_pred EEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc
Confidence 56677788888888999999999999999999999999999999999999999999998763
No 164
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=5.7e-20 Score=123.88 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=59.8
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++.
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 46777888888888899999999999999999999999999999999999987 4899999998763
No 165
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=5.9e-20 Score=123.52 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=59.0
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~ 73 (80)
++++++++.|+.+++++++||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.
T Consensus 5 l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~ 74 (251)
T PRK14251 5 ISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIY 74 (251)
T ss_pred EEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcc
Confidence 567788888888889999999999999999999999999999999999986 47999999998763
No 166
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.76 E-value=7e-20 Score=133.94 Aligned_cols=66 Identities=29% Similarity=0.441 Sum_probs=61.2
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|+++.+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 76 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCA 76 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 367788899998888999999999999999999999999999999999999999999999997654
No 167
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=6.5e-20 Score=123.23 Aligned_cols=65 Identities=20% Similarity=0.344 Sum_probs=58.4
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++++++++||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 4 l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred EEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcc
Confidence 5567778888778899999999999999999999999999999999999874 8899999997764
No 168
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.76 E-value=6.8e-20 Score=133.84 Aligned_cols=67 Identities=28% Similarity=0.512 Sum_probs=61.6
Q ss_pred hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.+
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~ 401 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSS 401 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence 4778889999965 569999999999999999999999999999999999999999999999987653
No 169
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=6.6e-20 Score=124.62 Aligned_cols=66 Identities=23% Similarity=0.332 Sum_probs=59.9
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++.+++++||++++||+++|+|+||||||||+++|+|+.+ |++|+|+++|+++.
T Consensus 21 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred eEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 3677888888988889999999999999999999999999999999999864 68999999998764
No 170
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.76 E-value=8.2e-20 Score=132.63 Aligned_cols=64 Identities=22% Similarity=0.370 Sum_probs=59.0
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
+++.++++.|+++.+|+++||++++|++++|+||||||||||+++|+|+.+|++|+|.+++.++
T Consensus 4 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~ 67 (490)
T PRK10938 4 LQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHI 67 (490)
T ss_pred EEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCccc
Confidence 5677778888888899999999999999999999999999999999999999999999987654
No 171
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.76 E-value=9.1e-20 Score=133.67 Aligned_cols=67 Identities=30% Similarity=0.470 Sum_probs=63.1
Q ss_pred hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.-++.++++++|++.++|+++||++.+||+.+|+|.||||||||+|+|+|.++|++|+|.++|+++.
T Consensus 7 ~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~ 73 (500)
T COG1129 7 PLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVA 73 (500)
T ss_pred ceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEcc
Confidence 3466888999999999999999999999999999999999999999999999999999999998764
No 172
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.76 E-value=8.4e-20 Score=118.18 Aligned_cols=61 Identities=30% Similarity=0.418 Sum_probs=55.0
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.+++++.| +++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (182)
T cd03215 5 LEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVT 65 (182)
T ss_pred EEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence 4455666666 999999999999999999999999999999999999999999999997764
No 173
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.76 E-value=7.8e-20 Score=123.46 Aligned_cols=64 Identities=22% Similarity=0.409 Sum_probs=57.5
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec----CCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP----TSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~----~~G~i~~~~~~i~ 73 (80)
+++.++++.| ++++++++||++++||+++|+|+||||||||+++|+|+.+| ++|+|+++|+++.
T Consensus 5 l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~ 72 (254)
T PRK10418 5 IELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVA 72 (254)
T ss_pred EEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecc
Confidence 4566677777 56899999999999999999999999999999999999999 9999999998763
No 174
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.76 E-value=8.5e-20 Score=123.57 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=61.1
Q ss_pred hhhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 7 QTVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 7 ~~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
..++.+++++.|+. +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~ 86 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDIS 86 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhh
Confidence 46778888888875 57999999999999999999999999999999999999999999999998764
No 175
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=9.6e-20 Score=126.66 Aligned_cols=64 Identities=20% Similarity=0.359 Sum_probs=56.5
Q ss_pred hccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 9 VDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 9 ~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
++++++++.|++ ..+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~ 71 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE 71 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceec
Confidence 456667777754 2599999999999999999999999999999999999999999999987654
No 176
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=8.2e-20 Score=124.65 Aligned_cols=66 Identities=23% Similarity=0.387 Sum_probs=60.1
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~ 73 (80)
.++++++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 24 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 94 (271)
T PRK14238 24 VFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF 94 (271)
T ss_pred EEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcc
Confidence 4677888888888889999999999999999999999999999999999987 68999999998763
No 177
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.76 E-value=9.3e-20 Score=124.22 Aligned_cols=65 Identities=26% Similarity=0.460 Sum_probs=57.9
Q ss_pred hccccccCCCC---------CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYD---------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~---------~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+ ++++++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence 45566677775 468999999999999999999999999999999999999999999999998654
No 178
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=7.6e-20 Score=122.92 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=58.2
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|+++.
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14240 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIY 73 (250)
T ss_pred EEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 5667778888878899999999999999999999999999999999998763 6899999998764
No 179
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.76 E-value=8e-20 Score=119.92 Aligned_cols=67 Identities=25% Similarity=0.417 Sum_probs=59.9
Q ss_pred hhhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 7 QTVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 7 ~~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
..+++.++++.|++ +.+++++||++++|++++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 73 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDIS 73 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhH
Confidence 34667778888864 47999999999999999999999999999999999999999999999997753
No 180
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.76 E-value=1.3e-19 Score=119.73 Aligned_cols=63 Identities=16% Similarity=0.282 Sum_probs=56.5
Q ss_pred cccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 11 SHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 11 ~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+.+..+.|+ +.++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 66 (218)
T cd03290 3 VTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNES 66 (218)
T ss_pred eeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccc
Confidence 455677775 467999999999999999999999999999999999999999999999987653
No 181
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=9.2e-20 Score=122.81 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=59.0
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~ 73 (80)
.++++++++.|+++.+|+++||++++||+++|+|+||||||||+++|+|+.++ ++|+|.++|+++.
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 76 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIM 76 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcc
Confidence 46677888888888999999999999999999999999999999999998753 4899999998764
No 182
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1e-19 Score=127.23 Aligned_cols=66 Identities=24% Similarity=0.334 Sum_probs=59.5
Q ss_pred hhccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|++ .++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~ 91 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIG 91 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcc
Confidence 3677888888864 36999999999999999999999999999999999999999999999987764
No 183
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.76 E-value=8.6e-20 Score=123.61 Aligned_cols=65 Identities=20% Similarity=0.443 Sum_probs=58.8
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC---CCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~---~G~i~~~~~~i~ 73 (80)
+++.++++.|+++++++++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.
T Consensus 5 l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~ 72 (262)
T PRK09984 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQ 72 (262)
T ss_pred EEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecc
Confidence 56677788888889999999999999999999999999999999999999876 499999998764
No 184
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1e-19 Score=119.60 Aligned_cols=62 Identities=23% Similarity=0.476 Sum_probs=54.6
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++.++++.|+++. .++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|.++.
T Consensus 2 ~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~ 63 (211)
T cd03298 2 RLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVT 63 (211)
T ss_pred EEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcC
Confidence 4566677777654 3999999999999999999999999999999999999999999998764
No 185
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.75 E-value=1.4e-19 Score=121.31 Aligned_cols=57 Identities=44% Similarity=0.679 Sum_probs=53.2
Q ss_pred CCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 16 ~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
+.|+.+++|+++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~ 85 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP 85 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc
Confidence 456778899999999999999999999999999999999999999999999998764
No 186
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=8.2e-20 Score=123.01 Aligned_cols=65 Identities=18% Similarity=0.353 Sum_probs=58.2
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee--c---CCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~--~---~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|+++.
T Consensus 5 l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~ 74 (252)
T PRK14256 5 VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIY 74 (252)
T ss_pred EEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcc
Confidence 456777888887889999999999999999999999999999999999986 3 5899999998764
No 187
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=9.4e-20 Score=124.03 Aligned_cols=66 Identities=20% Similarity=0.302 Sum_probs=60.1
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++++|+++||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 20 ~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 20 ALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred EEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 5677788888888899999999999999999999999999999999999986 57999999998764
No 188
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=9e-20 Score=122.54 Aligned_cols=66 Identities=26% Similarity=0.393 Sum_probs=59.1
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC-----CCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~-----~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 74 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcc
Confidence 356677788888888999999999999999999999999999999999998764 799999998764
No 189
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.75 E-value=1.2e-19 Score=116.35 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=54.7
Q ss_pred ccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 10 DSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 10 ~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
+.+++++.|+ ++++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 2 ~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~ 63 (166)
T cd03223 2 ELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG 63 (166)
T ss_pred EEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC
Confidence 4566777774 467999999999999999999999999999999999999999999999863
No 190
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=9.3e-20 Score=123.26 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=59.3
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee--c---CCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~--~---~~G~i~~~~~~i~ 73 (80)
.++++++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+ | ++|+|+++|+++.
T Consensus 12 ~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 12 VYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred eEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence 4677778888888889999999999999999999999999999999999987 3 5899999998764
No 191
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.75 E-value=1.2e-19 Score=120.18 Aligned_cols=61 Identities=31% Similarity=0.495 Sum_probs=54.0
Q ss_pred hccccccCCCCC-------ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 9 VDSHLETFPYDT-------KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 9 ~~~~~~~~~~~~-------~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
+++.++++.|+. ..+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~ 69 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRH 69 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEec
Confidence 345666777742 4799999999999999999999999999999999999999999999983
No 192
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1e-19 Score=122.45 Aligned_cols=65 Identities=23% Similarity=0.334 Sum_probs=57.9
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~ 73 (80)
++++++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 5 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 5 MESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred EEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecc
Confidence 4456667778778899999999999999999999999999999999999875 7899999998764
No 193
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.2e-19 Score=132.35 Aligned_cols=66 Identities=27% Similarity=0.395 Sum_probs=60.3
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec--CCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~--~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++++++++||++++||+++|+||||||||||+++|+|+++| ++|+|+++|.++.
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 72 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ 72 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 36777888888888899999999999999999999999999999999999986 7999999998763
No 194
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.3e-19 Score=132.03 Aligned_cols=66 Identities=29% Similarity=0.486 Sum_probs=60.7
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++++++++||++++|++++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~ 69 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMR 69 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence 456778888888888999999999999999999999999999999999999999999999997763
No 195
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=1.4e-19 Score=120.99 Aligned_cols=63 Identities=27% Similarity=0.478 Sum_probs=56.9
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++.|++. +++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.
T Consensus 2 ~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~ 64 (235)
T cd03299 2 KVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT 64 (235)
T ss_pred eeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcC
Confidence 456677777654 899999999999999999999999999999999999999999999998764
No 196
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.7e-19 Score=123.79 Aligned_cols=65 Identities=35% Similarity=0.603 Sum_probs=58.2
Q ss_pred hccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC---Cceeeeecccc
Q psy7220 9 VDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---GNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~---G~i~~~~~~i~ 73 (80)
++++++++.|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++ |+|+++|+++.
T Consensus 6 l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~ 75 (282)
T PRK13640 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLT 75 (282)
T ss_pred EEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECC
Confidence 556777887854 569999999999999999999999999999999999999987 89999998764
No 197
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.3e-19 Score=129.20 Aligned_cols=66 Identities=32% Similarity=0.540 Sum_probs=61.3
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++.++++.|++..+++++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus 19 ~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~ 84 (377)
T PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS 84 (377)
T ss_pred eEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 367788888888888999999999999999999999999999999999999999999999998764
No 198
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.6e-19 Score=135.28 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=58.3
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
+++.++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++.
T Consensus 2 i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~ 63 (638)
T PRK10636 2 IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN 63 (638)
T ss_pred EEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC
Confidence 46778899999999999999999999999999999999999999999999999999998774
No 199
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=2.1e-19 Score=122.95 Aligned_cols=65 Identities=25% Similarity=0.515 Sum_probs=58.0
Q ss_pred hccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|++ ..+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|+++.
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~ 72 (277)
T PRK13642 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLT 72 (277)
T ss_pred EEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECC
Confidence 556677777753 35999999999999999999999999999999999999999999999998764
No 200
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.74 E-value=1.9e-19 Score=131.21 Aligned_cols=66 Identities=35% Similarity=0.492 Sum_probs=62.3
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++.+++++.|++..+++++||++++||+.+|+|+||||||||+++|.|+++|++|+|+++|+++.
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~ 69 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVR 69 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEec
Confidence 466788899999999999999999999999999999999999999999999999999999998764
No 201
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.1e-19 Score=130.68 Aligned_cols=62 Identities=26% Similarity=0.357 Sum_probs=57.3
Q ss_pred ccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 12 ~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++.|+++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 63 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEID 63 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECC
Confidence 45677888888999999999999999999999999999999999999999999999998763
No 202
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.6e-19 Score=117.81 Aligned_cols=64 Identities=25% Similarity=0.329 Sum_probs=55.8
Q ss_pred hccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeecee--ecCCCceeeeeccc
Q psy7220 9 VDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSI 72 (80)
Q Consensus 9 ~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~--~~~~G~i~~~~~~i 72 (80)
++..++++.|++ +++++++||++++|++++|+||||||||||+++|+|+. +|++|++.++|+++
T Consensus 4 l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 345666777753 67999999999999999999999999999999999985 48999999998775
No 203
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.74 E-value=2.5e-19 Score=127.42 Aligned_cols=59 Identities=34% Similarity=0.615 Sum_probs=55.2
Q ss_pred CCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 16 ~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
++|+++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~ 59 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMK 59 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCc
Confidence 35778889999999999999999999999999999999999999999999999988753
No 204
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=2e-19 Score=129.20 Aligned_cols=59 Identities=29% Similarity=0.479 Sum_probs=53.1
Q ss_pred cCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 15 ~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
...|+...+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.
T Consensus 35 ~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~ 93 (400)
T PRK10070 35 LEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIA 93 (400)
T ss_pred HhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECC
Confidence 33444455899999999999999999999999999999999999999999999998764
No 205
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.7e-19 Score=124.17 Aligned_cols=65 Identities=14% Similarity=0.314 Sum_probs=59.6
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 40 l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 40 IEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred EEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 667888888888889999999999999999999999999999999999986 68999999998763
No 206
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.7e-19 Score=123.58 Aligned_cols=66 Identities=26% Similarity=0.344 Sum_probs=60.6
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 21 ~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 21 AMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred EEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence 46778889999888999999999999999999999999999999999999985 6999999997764
No 207
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.74 E-value=1.8e-19 Score=136.61 Aligned_cols=67 Identities=27% Similarity=0.541 Sum_probs=62.5
Q ss_pred hhccccccCCCCCc--cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDTK--PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~~--~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+++.++++|+|+.. .+|+++||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|.++.+
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~ 539 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLND 539 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHh
Confidence 68889999999765 69999999999999999999999999999999999999999999999998754
No 208
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.7e-19 Score=121.41 Aligned_cols=65 Identities=18% Similarity=0.311 Sum_probs=58.7
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC-----CCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~-----~G~i~~~~~~i~ 73 (80)
+++.++++.|+++.+++++||+|++|++++|+|+||||||||+++|+|+++|+ +|+|+++|.++.
T Consensus 5 l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIY 74 (251)
T ss_pred EEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcc
Confidence 55667788888788999999999999999999999999999999999999987 699999998764
No 209
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=2.5e-19 Score=125.30 Aligned_cols=66 Identities=26% Similarity=0.563 Sum_probs=57.3
Q ss_pred hccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
++++++++.|.. ..+++++||+|++||++||+|.||||||||+|+++++..|++|+|.++|+++..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~ 72 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTA 72 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEeccc
Confidence 344555555543 579999999999999999999999999999999999999999999999987654
No 210
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.5e-19 Score=121.43 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=57.5
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++.+++++||+|++||+++|+||||||||||+++|+|+.+| ++|+++++|.++.
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 4 FNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred EEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcc
Confidence 3456667777778899999999999999999999999999999999999886 5899999997763
No 211
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.74 E-value=2.2e-19 Score=130.71 Aligned_cols=65 Identities=31% Similarity=0.506 Sum_probs=59.0
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec--CCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~--~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++++++++||++++|++++|+||||||||||+++|+|+.+| ++|+|+++|+++.
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 4567788888888899999999999999999999999999999999999986 7999999997764
No 212
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.74 E-value=2.3e-19 Score=118.96 Aligned_cols=66 Identities=30% Similarity=0.500 Sum_probs=59.4
Q ss_pred hccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
++..++++.|.+ +++|+++||+|++||++-|+||||||||||+|+|++..+|+.|+|.++|+++..
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~ 68 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSR 68 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccc
Confidence 455667787754 569999999999999999999999999999999999999999999999998764
No 213
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.2e-19 Score=120.70 Aligned_cols=66 Identities=24% Similarity=0.367 Sum_probs=58.3
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee--c---CCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~--~---~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++.+++++||++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~ 75 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIY 75 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECc
Confidence 3567777888888889999999999999999999999999999999999853 6 4899999998763
No 214
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.74 E-value=2.4e-19 Score=134.49 Aligned_cols=67 Identities=24% Similarity=0.499 Sum_probs=61.6
Q ss_pred hhccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|+ ++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 519 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG 519 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCc
Confidence 477888999984 3579999999999999999999999999999999999999999999999988753
No 215
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.1e-19 Score=121.91 Aligned_cols=67 Identities=22% Similarity=0.393 Sum_probs=61.1
Q ss_pred hhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC-----CCceeeeeccc
Q psy7220 6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSI 72 (80)
Q Consensus 6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~-----~G~i~~~~~~i 72 (80)
+..+++.++++.|++..+++++||++++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|+++
T Consensus 5 ~~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i 76 (261)
T PRK14258 5 IPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNI 76 (261)
T ss_pred cceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEh
Confidence 45678888899998878999999999999999999999999999999999999985 79999998775
No 216
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.74 E-value=2.2e-19 Score=126.08 Aligned_cols=53 Identities=26% Similarity=0.491 Sum_probs=50.5
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
..+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 46999999999999999999999999999999999999999999999998764
No 217
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.8e-19 Score=122.49 Aligned_cols=65 Identities=14% Similarity=0.269 Sum_probs=58.6
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeeccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSI 72 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i 72 (80)
.+++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+ |++|+|+++|+++
T Consensus 10 ~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 79 (264)
T PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNL 79 (264)
T ss_pred EEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEc
Confidence 3567788888888889999999999999999999999999999999999976 3789999999776
No 218
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.5e-19 Score=131.30 Aligned_cols=61 Identities=34% Similarity=0.646 Sum_probs=57.1
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
++++++++.|+++++++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~ 62 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP 62 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 4667788889888999999999999999999999999999999999999999999999976
No 219
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2e-19 Score=121.74 Aligned_cols=66 Identities=24% Similarity=0.368 Sum_probs=59.5
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~ 73 (80)
.++++++++.|+++++++++||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|+++.
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecc
Confidence 46677888888888899999999999999999999999999999999999885 4899999998764
No 220
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=3.1e-19 Score=118.96 Aligned_cols=63 Identities=29% Similarity=0.487 Sum_probs=55.4
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|++.. .++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecC
Confidence 45667777776543 3899999999999999999999999999999999999999999998764
No 221
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.7e-19 Score=121.49 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=59.2
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeeccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSI 72 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i 72 (80)
.+++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++
T Consensus 16 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~ 85 (265)
T PRK14252 16 KSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNV 85 (265)
T ss_pred eEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccc
Confidence 56778889999888999999999999999999999999999999999999875 789999988654
No 222
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.74 E-value=3.9e-19 Score=117.21 Aligned_cols=62 Identities=27% Similarity=0.498 Sum_probs=55.1
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++.|+. .++++||++++|++++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus 2 ~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 63 (213)
T TIGR01277 2 ALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHT 63 (213)
T ss_pred eEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcc
Confidence 45666777763 568999999999999999999999999999999999999999999998764
No 223
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.5e-19 Score=122.18 Aligned_cols=66 Identities=18% Similarity=0.295 Sum_probs=59.9
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 25 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 25 ALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred EEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 46678888888888899999999999999999999999999999999999873 7999999998764
No 224
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=3.6e-19 Score=120.83 Aligned_cols=64 Identities=20% Similarity=0.308 Sum_probs=58.3
Q ss_pred hhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
-+.+++.++++.|+++.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G 71 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71 (257)
T ss_pred hhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcC
Confidence 3457778889999999999999999999999999999999999999999999999997777665
No 225
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.8e-19 Score=123.01 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=58.5
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.
T Consensus 40 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 40 VVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred EEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 567788888887789999999999999999999999999999999999864 48999999997753
No 226
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.73 E-value=3.1e-19 Score=134.31 Aligned_cols=67 Identities=22% Similarity=0.411 Sum_probs=61.8
Q ss_pred hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|+ ++++|+++||+|++|+.++|+|+||||||||+++|+|+++|++|+|+++|.++.+
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 540 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKD 540 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHH
Confidence 477888999986 4689999999999999999999999999999999999999999999999988653
No 227
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3.6e-19 Score=121.77 Aligned_cols=66 Identities=14% Similarity=0.205 Sum_probs=59.2
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~ 73 (80)
.++++++++.|+++++|+++||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|+++.
T Consensus 20 ~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 20 VFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred eEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 46677888888888899999999999999999999999999999999999763 5899999998763
No 228
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.8e-19 Score=120.35 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=56.8
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~ 73 (80)
++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 75 (251)
T PRK14244 7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75 (251)
T ss_pred EeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehH
Confidence 35566777877889999999999999999999999999999999999976 46999999997764
No 229
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=4.1e-19 Score=124.18 Aligned_cols=63 Identities=25% Similarity=0.445 Sum_probs=59.0
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
.+++.+.++.+++..+++++|++|+.||.++++|||||||||+|++|+|+..|+.|.|.++|+
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~ 64 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGR 64 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCE
Confidence 345667788899999999999999999999999999999999999999999999999999998
No 230
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.9e-19 Score=120.21 Aligned_cols=66 Identities=21% Similarity=0.364 Sum_probs=57.7
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeece---eec--CCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA---IKP--TSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl---~~~--~~G~i~~~~~~i~ 73 (80)
.++++++++.|+++.+++++||++++||+++|+|+||||||||+++|+|+ .+| ++|+|.++|+++.
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecc
Confidence 34567778888888899999999999999999999999999999999997 344 4899999998764
No 231
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3e-19 Score=120.12 Aligned_cols=66 Identities=24% Similarity=0.365 Sum_probs=58.7
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee--c---CCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~--~---~~G~i~~~~~~i~ 73 (80)
.+++.++++.|+++++++++||++++||+++|+|+||||||||+++|+|+.+ | ++|+|+++|+++.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 75 (252)
T PRK14255 5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY 75 (252)
T ss_pred eEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcc
Confidence 3567778888888889999999999999999999999999999999999865 4 5899999998763
No 232
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.73 E-value=3.6e-19 Score=133.91 Aligned_cols=67 Identities=27% Similarity=0.429 Sum_probs=61.7
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|++ +++|+++||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 545 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREE 545 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHH
Confidence 4778889998864 679999999999999999999999999999999999999999999999988753
No 233
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=3.3e-19 Score=125.01 Aligned_cols=65 Identities=26% Similarity=0.422 Sum_probs=56.7
Q ss_pred hccccccCCCC----------CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYD----------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~----------~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|. ...+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 6 l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~ 80 (327)
T PRK11308 6 LQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLL 80 (327)
T ss_pred EEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcC
Confidence 44555565553 247999999999999999999999999999999999999999999999998764
No 234
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=3.2e-19 Score=124.94 Aligned_cols=65 Identities=22% Similarity=0.398 Sum_probs=56.4
Q ss_pred hccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceee----cCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK----PTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~----~~~G~i~~~~~~i~ 73 (80)
++++++++.|+. ..+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~ 76 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQ 76 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECC
Confidence 455566666654 469999999999999999999999999999999999987 37899999998764
No 235
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3.3e-19 Score=124.92 Aligned_cols=65 Identities=26% Similarity=0.351 Sum_probs=55.9
Q ss_pred hccccccCCC----CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee----cCCCceeeeecccc
Q psy7220 9 VDSHLETFPY----DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK----PTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~----~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~----~~~G~i~~~~~~i~ 73 (80)
++++++++.| +...+++++||+|++||+++|+|+||||||||+++|+|+.+ |++|+|+++|+++.
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~ 76 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLL 76 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECC
Confidence 3455566666 34579999999999999999999999999999999999986 58899999998764
No 236
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.73 E-value=3.8e-19 Score=131.00 Aligned_cols=67 Identities=30% Similarity=0.516 Sum_probs=61.6
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|++ +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|+++.+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~ 409 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRD 409 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhh
Confidence 4788888998864 679999999999999999999999999999999999999999999999988653
No 237
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.73 E-value=2.7e-19 Score=116.61 Aligned_cols=59 Identities=29% Similarity=0.330 Sum_probs=53.8
Q ss_pred cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
++++.|+++.++++. |++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus 5 ~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 63 (177)
T cd03222 5 DCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP 63 (177)
T ss_pred CeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEE
Confidence 457788888899884 99999999999999999999999999999999999999998654
No 238
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4.2e-19 Score=120.73 Aligned_cols=65 Identities=22% Similarity=0.369 Sum_probs=58.1
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~ 73 (80)
+..+..++.|+++.+++++||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.
T Consensus 9 ~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 9 MDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred EEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence 3445567778888999999999999999999999999999999999999986 7999999998764
No 239
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.73 E-value=5.2e-19 Score=117.52 Aligned_cols=63 Identities=24% Similarity=0.372 Sum_probs=55.9
Q ss_pred ccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceee---cCCCceeeeeccc
Q psy7220 10 DSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSI 72 (80)
Q Consensus 10 ~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~---~~~G~i~~~~~~i 72 (80)
...+++++|.+ +++++++||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 5 PWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred eeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 35566666643 589999999999999999999999999999999999999 8999999999765
No 240
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4.3e-19 Score=119.28 Aligned_cols=65 Identities=17% Similarity=0.322 Sum_probs=57.2
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.
T Consensus 4 l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~ 73 (250)
T PRK14266 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73 (250)
T ss_pred EEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcc
Confidence 445666777777889999999999999999999999999999999999864 38899999998764
No 241
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.73 E-value=5.5e-19 Score=128.33 Aligned_cols=65 Identities=25% Similarity=0.464 Sum_probs=58.8
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-CCCceeeeeccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSI 72 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-~~G~i~~~~~~i 72 (80)
.+++.++++.|+++.+++++||++++||+++|+||||||||||+++|+|+.++ ++|+|+++|+++
T Consensus 260 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccC
Confidence 36677888888888899999999999999999999999999999999998775 699999999764
No 242
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=5.8e-19 Score=111.62 Aligned_cols=62 Identities=32% Similarity=0.602 Sum_probs=56.4
Q ss_pred ccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 12 ~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++.|.++.++++++|++++|++++|+|+||||||||+++|+|+++|+.|++++++.++.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~ 64 (157)
T cd00267 3 ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIA 64 (157)
T ss_pred EEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcc
Confidence 45566777778999999999999999999999999999999999999999999999997654
No 243
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=6.4e-19 Score=119.67 Aligned_cols=52 Identities=42% Similarity=0.660 Sum_probs=49.2
Q ss_pred CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
....+|+|+||++++||.+||+|+||||||||+|+|+|.++|++|+|.++|+
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~ 89 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK 89 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce
Confidence 3467999999999999999999999999999999999999999999999985
No 244
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.7e-19 Score=122.46 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=59.6
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+.+ |++|+|+++|.++.
T Consensus 46 l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 46 LSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred EEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 667888888888899999999999999999999999999999999999986 68999999997764
No 245
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.72 E-value=5.3e-19 Score=132.25 Aligned_cols=62 Identities=24% Similarity=0.415 Sum_probs=57.3
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
+++.++++.|+++++|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++.
T Consensus 4 l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~ 65 (635)
T PRK11147 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD 65 (635)
T ss_pred EEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC
Confidence 55667788888889999999999999999999999999999999999999999999998763
No 246
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.72 E-value=6.9e-19 Score=128.57 Aligned_cols=67 Identities=33% Similarity=0.530 Sum_probs=61.6
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|++ +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~ 388 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLAD 388 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhh
Confidence 5778888999865 469999999999999999999999999999999999999999999999987653
No 247
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=4.5e-19 Score=119.31 Aligned_cols=69 Identities=20% Similarity=0.361 Sum_probs=62.8
Q ss_pred hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC-----Cceeeeecccccc
Q psy7220 7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-----GNAYVMNHSIRDS 75 (80)
Q Consensus 7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~-----G~i~~~~~~i~~~ 75 (80)
..++.+++.++|+++.+|++||++|+++++++|+||||||||||||+++++....+ |+|.++|+++.+.
T Consensus 6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 6 PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 45677889999999999999999999999999999999999999999999987654 9999999998763
No 248
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.72 E-value=7.2e-19 Score=129.57 Aligned_cols=68 Identities=34% Similarity=0.594 Sum_probs=63.6
Q ss_pred hhhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 7 QTVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 7 ~~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.+++.+++++.|+ ++++++++||++++||.++|+|||||||||++++|.++++|++|+|.++|+++.+
T Consensus 327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~ 395 (567)
T COG1132 327 GSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRD 395 (567)
T ss_pred CeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhh
Confidence 3578899999998 6899999999999999999999999999999999999999999999999988764
No 249
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.72 E-value=7.1e-19 Score=130.02 Aligned_cols=67 Identities=22% Similarity=0.365 Sum_probs=61.2
Q ss_pred hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+++.+++++.|++ +++|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~ 407 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSS 407 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhh
Confidence 4777888888854 679999999999999999999999999999999999999999999999988753
No 250
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.72 E-value=6.4e-19 Score=130.05 Aligned_cols=62 Identities=29% Similarity=0.372 Sum_probs=57.1
Q ss_pred hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
.++++++++.|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~ 68 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP 68 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 466777888887 78899999999999999999999999999999999999999999999864
No 251
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=9.6e-19 Score=118.46 Aligned_cols=66 Identities=33% Similarity=0.587 Sum_probs=59.7
Q ss_pred hhccccccCCCCCc-cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~-~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++..++++.|.+. .+++++||+|++|++++|+|+||||||||+++|+|+++|++|.|.++|.++.
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~ 69 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTS 69 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeecc
Confidence 34567778888665 9999999999999999999999999999999999999999999999998754
No 252
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.2e-18 Score=127.26 Aligned_cols=65 Identities=28% Similarity=0.428 Sum_probs=58.0
Q ss_pred hccccccCCCC---CccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-cCCCceeeeecccc
Q psy7220 9 VDSHLETFPYD---TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~---~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-~~~G~i~~~~~~i~ 73 (80)
++..++++.|+ ++++++++||+|++||+++|+|+||||||||+++|+|+.+ |++|+|+++|+++.
T Consensus 260 l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~ 328 (506)
T PRK13549 260 LEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVK 328 (506)
T ss_pred EEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECC
Confidence 56778888883 4579999999999999999999999999999999999998 59999999987653
No 253
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.3e-18 Score=127.03 Aligned_cols=63 Identities=32% Similarity=0.429 Sum_probs=56.3
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+ .+++++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus 266 l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~ 328 (510)
T PRK09700 266 FEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS 328 (510)
T ss_pred EEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECC
Confidence 56667776653 4899999999999999999999999999999999999999999999997653
No 254
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.72 E-value=7e-19 Score=129.37 Aligned_cols=67 Identities=33% Similarity=0.503 Sum_probs=61.4
Q ss_pred hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|++ .++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.+
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 389 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA 389 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCC
Confidence 5778888998864 569999999999999999999999999999999999999999999999988653
No 255
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.72 E-value=1.2e-18 Score=126.82 Aligned_cols=65 Identities=29% Similarity=0.478 Sum_probs=57.9
Q ss_pred hccccccCCC---CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-CCCceeeeecccc
Q psy7220 9 VDSHLETFPY---DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~---~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-~~G~i~~~~~~i~ 73 (80)
+++.++++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.
T Consensus 258 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~ 326 (500)
T TIGR02633 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVD 326 (500)
T ss_pred EEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECC
Confidence 6677788877 346799999999999999999999999999999999999985 8999999987663
No 256
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.71 E-value=9.1e-19 Score=129.57 Aligned_cols=67 Identities=30% Similarity=0.543 Sum_probs=61.3
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|++ +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~ 406 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD 406 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 4778888998854 579999999999999999999999999999999999999999999999987654
No 257
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=9.5e-19 Score=114.79 Aligned_cols=63 Identities=27% Similarity=0.439 Sum_probs=56.9
Q ss_pred ccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 12 ~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
..+.+..++.++|+++||.+.+||+++|+||||||||||+|+++.+++|++|.++|.|+++..
T Consensus 7 kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~ 69 (223)
T COG4619 7 KQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVST 69 (223)
T ss_pred HHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccc
Confidence 334455577899999999999999999999999999999999999999999999999998754
No 258
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.71 E-value=8.6e-19 Score=132.39 Aligned_cols=67 Identities=24% Similarity=0.476 Sum_probs=61.5
Q ss_pred hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|+++.+
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~ 547 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQ 547 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence 4788889999864 479999999999999999999999999999999999999999999999988653
No 259
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1e-18 Score=115.11 Aligned_cols=58 Identities=24% Similarity=0.374 Sum_probs=53.5
Q ss_pred cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++.|+++.+ ++||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 62 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLF 62 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecc
Confidence 56888988766 99999999 999999999999999999999999999999999997653
No 260
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=9.3e-19 Score=128.34 Aligned_cols=63 Identities=27% Similarity=0.481 Sum_probs=58.4
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
.+++.++++.|+++.+++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++++
T Consensus 319 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~ 381 (530)
T PRK15064 319 ALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN 381 (530)
T ss_pred eEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc
Confidence 467788888898888999999999999999999999999999999999999999999998763
No 261
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.71 E-value=9.3e-19 Score=120.39 Aligned_cols=65 Identities=26% Similarity=0.407 Sum_probs=58.3
Q ss_pred hhccccccCCC--CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~--~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++.++++.| +...+|+++||+|++||+++|+|+||||||||+++|+|+++ ++|+|+++|.++.
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~ 68 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWN 68 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhh
Confidence 35677888888 45679999999999999999999999999999999999997 7899999998764
No 262
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.71 E-value=1.2e-18 Score=128.46 Aligned_cols=62 Identities=29% Similarity=0.374 Sum_probs=56.7
Q ss_pred hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
.+++.++++.|+ ++++|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~ 66 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP 66 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 356677888887 67899999999999999999999999999999999999999999999864
No 263
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.71 E-value=1.1e-18 Score=131.11 Aligned_cols=67 Identities=30% Similarity=0.563 Sum_probs=61.3
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|++ +++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~ 531 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 4778888998863 579999999999999999999999999999999999999999999999987653
No 264
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.71 E-value=9.4e-19 Score=122.85 Aligned_cols=66 Identities=27% Similarity=0.445 Sum_probs=57.8
Q ss_pred hhccccccCCCC----CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC---CCceeeeecccc
Q psy7220 8 TVDSHLETFPYD----TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~----~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~---~G~i~~~~~~i~ 73 (80)
.++++++++.|. ...+++++||+|++||+++|+|+||||||||+++|+|+++|+ +|+|+++|+++.
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~ 84 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREIL 84 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECC
Confidence 356667777663 357999999999999999999999999999999999999985 999999998764
No 265
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.71 E-value=1.6e-18 Score=127.93 Aligned_cols=66 Identities=26% Similarity=0.445 Sum_probs=59.0
Q ss_pred hhccccccC-CCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETF-PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~-~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+++.+++++ +|+++++|+++||+|++|++++|+|+||||||||+++|+|++ |++|+|.++|.++.+
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~ 415 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRE 415 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEeccc
Confidence 477778875 456678999999999999999999999999999999999999 999999999987653
No 266
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1e-18 Score=118.95 Aligned_cols=64 Identities=30% Similarity=0.537 Sum_probs=60.3
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
+++.++++.|+++++|+++|++|++||.++|+||||||||||+++++|.++|++|.+.+.|+..
T Consensus 32 i~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~ 95 (257)
T COG1119 32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRF 95 (257)
T ss_pred EEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeec
Confidence 5677889999999999999999999999999999999999999999999999999999988764
No 267
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.71 E-value=7.5e-19 Score=108.18 Aligned_cols=51 Identities=33% Similarity=0.638 Sum_probs=48.4
Q ss_pred cceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 24 l~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
|+++||++++|++++|+|+||||||||+++|+|+.+|++|+|.+++.++..
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~ 51 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISD 51 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTT
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccc
Confidence 689999999999999999999999999999999999999999999987754
No 268
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.71 E-value=1.2e-18 Score=127.80 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=57.7
Q ss_pred hccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220 9 VDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~ 73 (80)
+++.++++.|++ +++++++||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.
T Consensus 6 l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred EEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecc
Confidence 566777777753 5799999999999999999999999999999999999986 6999999998763
No 269
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.3e-18 Score=129.97 Aligned_cols=65 Identities=25% Similarity=0.362 Sum_probs=58.3
Q ss_pred hccccccCCCC-----------CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYD-----------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~-----------~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.++++.|+ ...+++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|+++.
T Consensus 314 L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 314 LQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389 (623)
T ss_pred EEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 56777787774 146999999999999999999999999999999999999999999999998663
No 270
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.70 E-value=1.7e-18 Score=118.88 Aligned_cols=54 Identities=35% Similarity=0.598 Sum_probs=51.1
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
..++++|||+|++||++||+|+|||||||+-|+|.|+.+|++|+|+++|+++..
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~ 79 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK 79 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh
Confidence 379999999999999999999999999999999999999999999999988643
No 271
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.70 E-value=2e-18 Score=127.65 Aligned_cols=67 Identities=30% Similarity=0.557 Sum_probs=61.2
Q ss_pred hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++..++++.|++ +++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~ 401 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRT 401 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhh
Confidence 4777888888864 579999999999999999999999999999999999999999999999987653
No 272
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.70 E-value=2e-18 Score=126.29 Aligned_cols=59 Identities=36% Similarity=0.570 Sum_probs=54.8
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee--ecCCCceeee
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVM 68 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~--~~~~G~i~~~ 68 (80)
+++++++.|+++++++++||++++|++++|+||||||||||+++|+|+. +|++|+|+++
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~ 62 (520)
T TIGR03269 2 EVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYH 62 (520)
T ss_pred EEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEe
Confidence 4667888888888999999999999999999999999999999999997 6999999997
No 273
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.70 E-value=2.1e-18 Score=129.09 Aligned_cols=61 Identities=31% Similarity=0.469 Sum_probs=56.9
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~ 68 (80)
.+++.++++.|+++++++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++
T Consensus 319 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~ 379 (635)
T PRK11147 319 VFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG 379 (635)
T ss_pred eEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC
Confidence 3677888888988889999999999999999999999999999999999999999999983
No 274
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.70 E-value=2.1e-18 Score=121.86 Aligned_cols=59 Identities=17% Similarity=0.302 Sum_probs=53.5
Q ss_pred cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++.|++..+ ++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~ 62 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLF 62 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc
Confidence 56777877654 999999999999999999999999999999999999999999998764
No 275
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=2.2e-18 Score=121.70 Aligned_cols=59 Identities=15% Similarity=0.230 Sum_probs=53.0
Q ss_pred cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++.|+++.+ ++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 5 ~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~ 63 (352)
T PRK11144 5 NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLF 63 (352)
T ss_pred EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 56777876543 899999999999999999999999999999999999999999997754
No 276
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.70 E-value=2.2e-18 Score=127.08 Aligned_cols=61 Identities=31% Similarity=0.569 Sum_probs=56.6
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
+++.++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|++++
T Consensus 323 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~ 383 (552)
T TIGR03719 323 IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE 383 (552)
T ss_pred EEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC
Confidence 6677788888888899999999999999999999999999999999999999999999853
No 277
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.69 E-value=2.5e-18 Score=127.05 Aligned_cols=66 Identities=21% Similarity=0.533 Sum_probs=59.7
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.+++++.|+. +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~ 380 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLT 380 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHh
Confidence 4667777887753 57999999999999999999999999999999999999999999999998764
No 278
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.69 E-value=2.4e-18 Score=126.37 Aligned_cols=67 Identities=27% Similarity=0.475 Sum_probs=61.0
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|++ +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ 384 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhh
Confidence 4777888998853 579999999999999999999999999999999999999999999999987643
No 279
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.4e-18 Score=129.06 Aligned_cols=61 Identities=31% Similarity=0.510 Sum_probs=57.1
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~ 68 (80)
.+++.++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++
T Consensus 312 ~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~ 372 (638)
T PRK10636 312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA 372 (638)
T ss_pred eEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC
Confidence 3667788888988899999999999999999999999999999999999999999999986
No 280
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.69 E-value=2.3e-18 Score=126.39 Aligned_cols=66 Identities=30% Similarity=0.538 Sum_probs=60.7
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++.++++++|.+ +++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~ 397 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLA 397 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHH
Confidence 4778888888854 57999999999999999999999999999999999999999999999998765
No 281
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.69 E-value=2.3e-18 Score=127.15 Aligned_cols=62 Identities=31% Similarity=0.584 Sum_probs=57.4
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
.+++.++++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++
T Consensus 324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~ 385 (556)
T PRK11819 324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE 385 (556)
T ss_pred EEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 36777888888888899999999999999999999999999999999999999999999853
No 282
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.69 E-value=2.9e-18 Score=127.20 Aligned_cols=67 Identities=28% Similarity=0.460 Sum_probs=61.1
Q ss_pred hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|++ +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 401 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT 401 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhh
Confidence 4777888998865 579999999999999999999999999999999999999999999999987643
No 283
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.69 E-value=3.1e-18 Score=114.39 Aligned_cols=50 Identities=28% Similarity=0.616 Sum_probs=47.4
Q ss_pred cceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 24 l~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 50 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQIT 50 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence 57999999999999999999999999999999999999999999998764
No 284
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.69 E-value=2.6e-18 Score=126.36 Aligned_cols=66 Identities=30% Similarity=0.558 Sum_probs=60.0
Q ss_pred hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++.+++++.|+. +.+|+++||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~ 405 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLR 405 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHH
Confidence 3677788888853 56999999999999999999999999999999999999999999999998765
No 285
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.69 E-value=2.7e-18 Score=126.69 Aligned_cols=67 Identities=19% Similarity=0.338 Sum_probs=60.9
Q ss_pred hhccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+++.+++++.|++ +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~ 408 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSA 408 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 4777888888864 259999999999999999999999999999999999999999999999988754
No 286
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.69 E-value=4.3e-18 Score=112.86 Aligned_cols=50 Identities=28% Similarity=0.483 Sum_probs=46.3
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCcee-eeecc
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-VMNHS 71 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~-~~~~~ 71 (80)
++++++||+|++|++++|+||||||||||+++|+|+.+|++|+|. +++..
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~ 51 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDA 51 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCce
Confidence 478999999999999999999999999999999999999999997 66643
No 287
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.69 E-value=3.9e-18 Score=113.68 Aligned_cols=51 Identities=29% Similarity=0.550 Sum_probs=48.1
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeeeeeceeec----CCCceeeeecccc
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP----TSGNAYVMNHSIR 73 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~----~~G~i~~~~~~i~ 73 (80)
+++++||++++|++++|+||||||||||+++|+|+.+| ++|+|+++|+++.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~ 55 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLL 55 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEech
Confidence 57899999999999999999999999999999999998 8999999998764
No 288
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.69 E-value=3.8e-18 Score=124.77 Aligned_cols=61 Identities=38% Similarity=0.590 Sum_probs=55.1
Q ss_pred hhccccccCCCC-----CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220 8 TVDSHLETFPYD-----TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68 (80)
Q Consensus 8 ~~~~~~~~~~~~-----~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~ 68 (80)
.++++++++.|+ .+++++++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 344 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVR 344 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEe
Confidence 366777788774 2579999999999999999999999999999999999999999999996
No 289
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.69 E-value=5.6e-18 Score=123.19 Aligned_cols=63 Identities=25% Similarity=0.443 Sum_probs=55.8
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.+ +++++++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|.++.
T Consensus 251 i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 313 (491)
T PRK10982 251 LEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN 313 (491)
T ss_pred EEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECC
Confidence 4556666653 46999999999999999999999999999999999999999999999987664
No 290
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=3.6e-18 Score=114.23 Aligned_cols=62 Identities=29% Similarity=0.576 Sum_probs=55.4
Q ss_pred ccccCCCCCcc--ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 12 HLETFPYDTKP--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 12 ~~~~~~~~~~~--vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++.+|.+++ +++++|++|.+||+++++||||||||||+++++|+..|..|+|.++++++.
T Consensus 7 ~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~ 70 (259)
T COG4525 7 SHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE 70 (259)
T ss_pred hheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEecc
Confidence 34455666655 999999999999999999999999999999999999999999999998764
No 291
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.68 E-value=3.8e-18 Score=128.29 Aligned_cols=67 Identities=22% Similarity=0.420 Sum_probs=61.0
Q ss_pred hhccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|+ ++++++++||++++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~ 523 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAI 523 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhh
Confidence 477788899885 3569999999999999999999999999999999999999999999999988653
No 292
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.68 E-value=3.6e-18 Score=122.19 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=55.0
Q ss_pred ccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 12 ~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
..+...|+...+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~ 86 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDG 86 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCE
Confidence 44566788889999999999999999999999999999999999999999999999985
No 293
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.68 E-value=3.7e-18 Score=125.14 Aligned_cols=64 Identities=28% Similarity=0.455 Sum_probs=56.9
Q ss_pred hccccccCCCC-----------CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYD-----------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~-----------~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+.+ ++|+|+++|+++.
T Consensus 276 l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLH 350 (529)
T ss_pred ccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcc
Confidence 66777787774 3579999999999999999999999999999999999985 8999999997653
No 294
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3.6e-18 Score=127.68 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=56.8
Q ss_pred hhccccccCCCC----CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 8 TVDSHLETFPYD----TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 8 ~~~~~~~~~~~~----~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
.++++++++.|+ ..++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~ 79 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKML 79 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEE
Confidence 356777777775 2479999999999999999999999999999999999999999999998753
No 295
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=8.1e-18 Score=116.50 Aligned_cols=54 Identities=50% Similarity=0.706 Sum_probs=50.4
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
-++++|+||+|++|++++++|+|||||||++|+|+|++.|++|.|.++|....+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~ 90 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR 90 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch
Confidence 469999999999999999999999999999999999999999999999976543
No 296
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.68 E-value=5e-18 Score=117.11 Aligned_cols=60 Identities=20% Similarity=0.411 Sum_probs=53.3
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
.+++.++++. ++.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 39 ~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g 98 (282)
T cd03291 39 NLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG 98 (282)
T ss_pred eEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 4556666653 46799999999999999999999999999999999999999999999876
No 297
>KOG0058|consensus
Probab=99.68 E-value=5.5e-18 Score=127.69 Aligned_cols=67 Identities=31% Similarity=0.541 Sum_probs=62.4
Q ss_pred hhccccccCCCCCc---cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDTK---PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~~---~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.++++|.|..+ ++|+|+||+|++||++++|||||+||||..++|-+++.|++|+|.++|.++++
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~ 534 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISD 534 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhh
Confidence 67888899999654 69999999999999999999999999999999999999999999999999865
No 298
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.67 E-value=3.4e-17 Score=109.41 Aligned_cols=67 Identities=30% Similarity=0.447 Sum_probs=61.5
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee-ccccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN-HSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~-~~i~~ 74 (80)
.+++.+++++|++-.+++++||++.+||.-+|+|||||||||++.+|+|--+|+.|+++++| .++..
T Consensus 5 iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~ 72 (249)
T COG4674 5 ILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTK 72 (249)
T ss_pred eEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhcc
Confidence 45677889999999999999999999999999999999999999999999999999999998 55543
No 299
>KOG0057|consensus
Probab=99.67 E-value=5.7e-18 Score=124.94 Aligned_cols=66 Identities=26% Similarity=0.517 Sum_probs=61.2
Q ss_pred hhccccccCCCCCcc-ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDTKP-AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~-vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++..++.+.|++++ +|+++||+|++||.+||+|+|||||||++|+|.++++ ++|+|+++|+++++
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~ 417 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKE 417 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhh
Confidence 467788888998876 9999999999999999999999999999999999999 99999999999865
No 300
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.67 E-value=8.6e-18 Score=113.38 Aligned_cols=50 Identities=30% Similarity=0.480 Sum_probs=46.8
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+|+++||++++|++++|+|+||||||||+++|+|+.+ .+|+|.++|+++.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~ 60 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLE 60 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecC
Confidence 8999999999999999999999999999999999985 4899999998764
No 301
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=7.6e-18 Score=118.27 Aligned_cols=66 Identities=21% Similarity=0.390 Sum_probs=58.0
Q ss_pred hhccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~ 73 (80)
.++++++++.|. .+++|+++||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.
T Consensus 80 ~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 80 VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred eEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 346677788774 3579999999999999999999999999999999999986 56899999999875
No 302
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.66 E-value=1e-17 Score=124.04 Aligned_cols=64 Identities=31% Similarity=0.474 Sum_probs=56.2
Q ss_pred hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
.+++.++++.|++ +++|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.+
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~ 87 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA 87 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe
Confidence 3455666666665 469999999999999999999999999999999999999999999998864
No 303
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.66 E-value=8.8e-18 Score=114.38 Aligned_cols=53 Identities=30% Similarity=0.563 Sum_probs=48.2
Q ss_pred cccCCCCCc-cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCcee
Q psy7220 13 LETFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66 (80)
Q Consensus 13 ~~~~~~~~~-~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~ 66 (80)
+++++|+.. .+++++|+ +++|++++|+||||||||||+++|+|+++|++|+|.
T Consensus 5 ~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~ 58 (255)
T cd03236 5 EPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD 58 (255)
T ss_pred CcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEe
Confidence 457778764 59999995 999999999999999999999999999999999996
No 304
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.66 E-value=1.4e-17 Score=113.77 Aligned_cols=52 Identities=33% Similarity=0.553 Sum_probs=48.8
Q ss_pred CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
..+++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~ 86 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE 86 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE
Confidence 3457999999999999999999999999999999999999999999999885
No 305
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.2e-17 Score=113.05 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=57.7
Q ss_pred hccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeecee--ecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~--~~~~G~i~~~~~~i~~ 74 (80)
++++++.+...+ +++|+++||+|++||+.+|+||||||||||..+|+|.. ++++|+|.++|+++.+
T Consensus 4 L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~ 72 (251)
T COG0396 4 LEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILE 72 (251)
T ss_pred eEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccccc
Confidence 344555666666 59999999999999999999999999999999999986 6789999999999864
No 306
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.65 E-value=1.3e-17 Score=112.55 Aligned_cols=57 Identities=32% Similarity=0.564 Sum_probs=53.6
Q ss_pred CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccccc
Q psy7220 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~~ 75 (80)
..+++|+++|++|++|+++.|+|.||||||||+++++|.+.|++|.|.++|.++.+.
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~ 73 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK 73 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccC
Confidence 357899999999999999999999999999999999999999999999999988754
No 307
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.65 E-value=1.3e-17 Score=136.66 Aligned_cols=66 Identities=55% Similarity=0.787 Sum_probs=60.6
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|++ +.+++++||+|++||++||+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus 1937 ~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~ 2004 (2272)
T TIGR01257 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL 2004 (2272)
T ss_pred eEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECc
Confidence 3667788888875 57999999999999999999999999999999999999999999999998764
No 308
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.65 E-value=2.4e-17 Score=120.21 Aligned_cols=52 Identities=40% Similarity=0.657 Sum_probs=49.2
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~ 318 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPID 318 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECC
Confidence 5899999999999999999999999999999999999999999999987653
No 309
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.9e-17 Score=121.97 Aligned_cols=67 Identities=25% Similarity=0.499 Sum_probs=61.7
Q ss_pred hhccccccCCCCCc--cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDTK--PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~~--~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.++++|.|.+. ++|+++||++++||.++|+|++||||||+++.+.|.++|++|+|.++|.++..
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhh
Confidence 46888999998664 59999999999999999999999999999999999999999999999988754
No 310
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.4e-17 Score=121.93 Aligned_cols=64 Identities=31% Similarity=0.556 Sum_probs=58.7
Q ss_pred cccccCCCCCc-cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 11 SHLETFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 11 ~~~~~~~~~~~-~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
..++++.|++. ++++++||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+..+
T Consensus 323 ~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~ 387 (559)
T COG4988 323 LENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRD 387 (559)
T ss_pred ecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccc
Confidence 34888888664 89999999999999999999999999999999999999999999999987654
No 311
>PLN03232 ABC transporter C family member; Provisional
Probab=99.64 E-value=2e-17 Score=132.70 Aligned_cols=67 Identities=21% Similarity=0.380 Sum_probs=61.7
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+++.+++++.|.. +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++.+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhh
Confidence 4788899998853 579999999999999999999999999999999999999999999999988754
No 312
>PLN03130 ABC transporter C family member; Provisional
Probab=99.64 E-value=2.3e-17 Score=133.11 Aligned_cols=67 Identities=21% Similarity=0.404 Sum_probs=61.6
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.+
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISK 1305 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEeccc
Confidence 4788889998854 479999999999999999999999999999999999999999999999998754
No 313
>PLN03211 ABC transporter G-25; Provisional
Probab=99.64 E-value=3.3e-17 Score=123.50 Aligned_cols=63 Identities=25% Similarity=0.352 Sum_probs=56.5
Q ss_pred cccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC--CCceeeeecccc
Q psy7220 11 SHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT--SGNAYVMNHSIR 73 (80)
Q Consensus 11 ~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~--~G~i~~~~~~i~ 73 (80)
..++++.|+++.+|+++|+++++||+++|+||||||||||+++|+|..+|+ +|+|.++|+++.
T Consensus 71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~ 135 (659)
T PLN03211 71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT 135 (659)
T ss_pred cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc
Confidence 344667788889999999999999999999999999999999999998885 899999998753
No 314
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.64 E-value=3.6e-17 Score=119.32 Aligned_cols=52 Identities=42% Similarity=0.702 Sum_probs=49.0
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~ 317 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVV 317 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 4799999999999999999999999999999999999999999999997653
No 315
>PLN03073 ABC transporter F family; Provisional
Probab=99.64 E-value=3e-17 Score=124.72 Aligned_cols=62 Identities=24% Similarity=0.534 Sum_probs=55.8
Q ss_pred hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
.++..++++.|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|++++
T Consensus 508 ~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~ 570 (718)
T PLN03073 508 IISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA 570 (718)
T ss_pred eEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC
Confidence 356778888885 45699999999999999999999999999999999999999999998764
No 316
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.63 E-value=3e-17 Score=121.42 Aligned_cols=62 Identities=32% Similarity=0.606 Sum_probs=57.5
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
.+++.++++.|+++++++++||++.+|+.+||||+|||||||||++|+|...|++|+|.+..
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~ 64 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC
Confidence 35567778899999999999999999999999999999999999999999999999998865
No 317
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.63 E-value=3.8e-17 Score=122.69 Aligned_cols=66 Identities=26% Similarity=0.385 Sum_probs=58.3
Q ss_pred hccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
++++++++.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|++.++|+++..
T Consensus 5 l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~ 74 (648)
T PRK10535 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVAT 74 (648)
T ss_pred EEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCc
Confidence 556666777742 469999999999999999999999999999999999999999999999987653
No 318
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.63 E-value=5.1e-17 Score=108.19 Aligned_cols=53 Identities=40% Similarity=0.711 Sum_probs=50.1
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
..+++.+||++++|+.++|+|.||||||||.++|+|+++|++|+|.+|++.+.
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~ 78 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLH 78 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCcccc
Confidence 35899999999999999999999999999999999999999999999998754
No 319
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.63 E-value=4.3e-17 Score=130.97 Aligned_cols=67 Identities=21% Similarity=0.288 Sum_probs=61.9
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+++.+++++.|.. .++|+++||+|++||++||+|++|||||||+++|.|+++|++|+|.++|.++.+
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~ 1352 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAK 1352 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccc
Confidence 5788888998864 479999999999999999999999999999999999999999999999998764
No 320
>PTZ00243 ABC transporter; Provisional
Probab=99.63 E-value=4e-17 Score=131.43 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=61.5
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|.+ .++|+++||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|.++.+
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~ 1376 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGA 1376 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc
Confidence 4778888998854 459999999999999999999999999999999999999999999999998764
No 321
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.63 E-value=6.4e-17 Score=118.40 Aligned_cols=51 Identities=31% Similarity=0.466 Sum_probs=48.5
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~ 328 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEIN 328 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECC
Confidence 699999999999999999999999999999999999999999999987653
No 322
>PLN03073 ABC transporter F family; Provisional
Probab=99.63 E-value=5.1e-17 Score=123.49 Aligned_cols=66 Identities=18% Similarity=0.320 Sum_probs=58.5
Q ss_pred hhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee---ecCCCceeeeecc
Q psy7220 6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI---KPTSGNAYVMNHS 71 (80)
Q Consensus 6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~---~~~~G~i~~~~~~ 71 (80)
..++++.++++.|+++++|+++||+|++|+++||+|+||||||||+++|+|.. .|+.|+|.+.++.
T Consensus 175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 175 IKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE 243 (718)
T ss_pred ceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence 34678889999998889999999999999999999999999999999999854 5788999876664
No 323
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.63 E-value=2.9e-17 Score=134.66 Aligned_cols=66 Identities=35% Similarity=0.494 Sum_probs=60.7
Q ss_pred hhccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|+ ++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|.++.
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~ 995 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE 995 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECc
Confidence 467788888884 578999999999999999999999999999999999999999999999998774
No 324
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.63 E-value=6.6e-17 Score=116.79 Aligned_cols=69 Identities=30% Similarity=0.470 Sum_probs=63.2
Q ss_pred hhhhccccccCCCCCc-cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 6 LQTVDSHLETFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.+.++.+++.|.|... .-+..||++|++||++-|+|.||||||||++.|.|+++|++|+|++||.+++.
T Consensus 320 ~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~ 389 (546)
T COG4615 320 WKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA 389 (546)
T ss_pred ccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC
Confidence 4567888889988765 67899999999999999999999999999999999999999999999999865
No 325
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.62 E-value=4.3e-17 Score=130.74 Aligned_cols=66 Identities=24% Similarity=0.545 Sum_probs=59.7
Q ss_pred hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee-ecccc
Q psy7220 8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM-NHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~-~~~i~ 73 (80)
+++.+++++.|+. .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|+++ |.++.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLK 451 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchh
Confidence 5788899999974 369999999999999999999999999999999999999999999995 56653
No 326
>KOG0055|consensus
Probab=99.62 E-value=5.7e-17 Score=127.41 Aligned_cols=67 Identities=25% Similarity=0.512 Sum_probs=62.6
Q ss_pred hhccccccCCCCCc---cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDTK---PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~~---~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+++.+++.|.|..+ ++|+++||.|++|++++|+|+|||||||++++|.+++.|++|+|+++|.++..
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~ 419 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRN 419 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchh
Confidence 78888999999765 59999999999999999999999999999999999999999999999998764
No 327
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.62 E-value=7.8e-17 Score=119.11 Aligned_cols=51 Identities=35% Similarity=0.659 Sum_probs=49.1
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
..+++++||++.+||++||+|+|||||||+.|+|+|+.+|+.|+|.++|.+
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~ 354 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD 354 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc
Confidence 468999999999999999999999999999999999999999999999977
No 328
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.60 E-value=9.3e-17 Score=128.83 Aligned_cols=53 Identities=19% Similarity=0.352 Sum_probs=49.1
Q ss_pred hhccccccCCCC---CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec
Q psy7220 8 TVDSHLETFPYD---TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60 (80)
Q Consensus 8 ~~~~~~~~~~~~---~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~ 60 (80)
.++.++++|.|. +.++|+++||+|++|++++|+|||||||||++++|.|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 477889999995 34799999999999999999999999999999999999998
No 329
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.60 E-value=1.4e-16 Score=105.80 Aligned_cols=67 Identities=21% Similarity=0.365 Sum_probs=62.5
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++..++.++|+...+|+++|++.++|+.+.|+|.+|||||||++|++=+..|+.|.|.++|+.+.-
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~ 72 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRL 72 (256)
T ss_pred ceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEe
Confidence 4667788899999999999999999999999999999999999999999999999999999988753
No 330
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.59 E-value=2.3e-16 Score=106.85 Aligned_cols=52 Identities=37% Similarity=0.646 Sum_probs=45.6
Q ss_pred ccccceeeeeec-----cceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 21 KPAVNQISFGVG-----RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 21 ~~vl~~isl~i~-----~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
...+++++|+++ +||+++|+||||||||||+++|+|+.+|++|+|.+++..+
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i 63 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV 63 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceE
Confidence 346777777776 7999999999999999999999999999999999988543
No 331
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.59 E-value=2.5e-16 Score=104.35 Aligned_cols=63 Identities=27% Similarity=0.406 Sum_probs=53.0
Q ss_pred cccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccccc
Q psy7220 11 SHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75 (80)
Q Consensus 11 ~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~~ 75 (80)
+.++.+.|+.. --.++++|+.||+++|+||||||||||+++++|+..|.+|+|.++|++....
T Consensus 4 L~~V~~~y~~~--~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~ 66 (231)
T COG3840 4 LDDVRFSYGHL--PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS 66 (231)
T ss_pred ccceEEeeCcc--eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcC
Confidence 34455666543 3367888999999999999999999999999999999999999999886543
No 332
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.59 E-value=2.1e-16 Score=118.95 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=55.9
Q ss_pred hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
.++.+++++.|. ++++++++||++++||+++|+||||||||||+++|+|+++|++|++.+++
T Consensus 451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~ 513 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA 513 (659)
T ss_pred eEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC
Confidence 367788888874 55799999999999999999999999999999999999999999998764
No 333
>PRK13409 putative ATPase RIL; Provisional
Probab=99.58 E-value=1.5e-16 Score=118.82 Aligned_cols=61 Identities=26% Similarity=0.406 Sum_probs=54.5
Q ss_pred ccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCcee-----------eeecccc
Q psy7220 12 HLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----------VMNHSIR 73 (80)
Q Consensus 12 ~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~-----------~~~~~i~ 73 (80)
..++++|+. ..+|++++ .+++|++++|+||||||||||+++|+|+++|+.|+|. ++|+++.
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQ 149 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHH
Confidence 346788886 46999999 8999999999999999999999999999999999997 8887654
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=99.57 E-value=2.8e-16 Score=117.32 Aligned_cols=59 Identities=31% Similarity=0.362 Sum_probs=52.6
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~ 68 (80)
++..++++.|++. .|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++
T Consensus 341 l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~ 399 (590)
T PRK13409 341 VEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE 399 (590)
T ss_pred EEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe
Confidence 5566677777664 5899999999999999999999999999999999999999999875
No 335
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.56 E-value=5.8e-16 Score=102.01 Aligned_cols=55 Identities=25% Similarity=0.521 Sum_probs=51.8
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.-.+|++++|.|++||.++|+||+|||||||+-+++|+..|++|+|.+.|+++..
T Consensus 22 ~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ 76 (228)
T COG4181 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHK 76 (228)
T ss_pred ceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhh
Confidence 3579999999999999999999999999999999999999999999999998654
No 336
>KOG0056|consensus
Probab=99.55 E-value=4.9e-16 Score=114.84 Aligned_cols=67 Identities=34% Similarity=0.569 Sum_probs=61.9
Q ss_pred hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++..++++.|. ++++|+|+||.+.+|+.++++||+|+||||++|+|.++++..+|.|.++|++++.
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrn 604 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRN 604 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHH
Confidence 567788899885 5889999999999999999999999999999999999999999999999999753
No 337
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.55 E-value=5.7e-16 Score=124.43 Aligned_cols=66 Identities=29% Similarity=0.431 Sum_probs=60.1
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|.. .++|+++||+|++||.+||+|+||||||||+++|.|+++ ++|+|.++|.++.+
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~ 1284 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNS 1284 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEccc
Confidence 4778888998854 679999999999999999999999999999999999997 78999999998753
No 338
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=1.1e-15 Score=101.31 Aligned_cols=63 Identities=25% Similarity=0.436 Sum_probs=58.5
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
-++.+.+++.|+.....+++||++.+||.++|+|++|||||||+++|++-+.|+.|+|.+...
T Consensus 6 LL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r 68 (258)
T COG4107 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMR 68 (258)
T ss_pred ceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcC
Confidence 456678899999999999999999999999999999999999999999999999999998653
No 339
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.53 E-value=9.7e-16 Score=101.92 Aligned_cols=44 Identities=43% Similarity=0.688 Sum_probs=41.7
Q ss_pred eeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
|++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 44 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASP 44 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc
Confidence 57899999999999999999999999999999999999999765
No 340
>KOG0055|consensus
Probab=99.53 E-value=1.1e-15 Score=120.37 Aligned_cols=67 Identities=27% Similarity=0.560 Sum_probs=62.4
Q ss_pred hhccccccCCCCCc---cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDTK---PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~~---~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+++.++++|.|..+ ++++|+||++++|+.++|||||||||||.+.+|-+++.|+.|.|.++|+++.+
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~ 1056 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKD 1056 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCccccc
Confidence 68889999999754 69999999999999999999999999999999999999999999999998764
No 341
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.52 E-value=1.3e-15 Score=121.97 Aligned_cols=64 Identities=25% Similarity=0.335 Sum_probs=55.5
Q ss_pred ccccccCCCC----CccccceeeeeeccceeeeeecccCCCceeEeeeeeceee---cCCCceeeeecccc
Q psy7220 10 DSHLETFPYD----TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~----~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~---~~~G~i~~~~~~i~ 73 (80)
+.+++++.++ .+.+|+++|+.+++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.
T Consensus 761 ~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~ 831 (1394)
T TIGR00956 761 HWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD 831 (1394)
T ss_pred EEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC
Confidence 4556666553 4679999999999999999999999999999999999987 67899999998763
No 342
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.52 E-value=2e-15 Score=98.31 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=42.3
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
..++++++||++++|++++|+||||||||||++++. +++|++.+++.
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~ 53 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISF 53 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCc
Confidence 457999999999999999999999999999999884 36899998865
No 343
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.52 E-value=2.1e-15 Score=111.68 Aligned_cols=62 Identities=32% Similarity=0.565 Sum_probs=56.1
Q ss_pred hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
-++..++++.|++ +.+++++||.|.+|+.++|+||||+|||||+++|+|...|.+|+|.+..
T Consensus 321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~ 383 (530)
T COG0488 321 VLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE 383 (530)
T ss_pred eEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC
Confidence 4567888899965 6899999999999999999999999999999999999999999988754
No 344
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.2e-15 Score=106.88 Aligned_cols=65 Identities=23% Similarity=0.471 Sum_probs=53.8
Q ss_pred ccccccCCCC----CccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-c----CCCceeeeeccccc
Q psy7220 10 DSHLETFPYD----TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-P----TSGNAYVMNHSIRD 74 (80)
Q Consensus 10 ~~~~~~~~~~----~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-~----~~G~i~~~~~~i~~ 74 (80)
++++++..|. ...+++++||++++||++||+|+|||||||+.+.|.|+++ | .+|+|.++|+++.+
T Consensus 3 ~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~ 76 (316)
T COG0444 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLS 76 (316)
T ss_pred eEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCccccc
Confidence 3445555443 2479999999999999999999999999999999999997 3 46899999987543
No 345
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.50 E-value=3.5e-15 Score=110.42 Aligned_cols=54 Identities=33% Similarity=0.542 Sum_probs=49.9
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC----CCceeeeeccccc
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT----SGNAYVMNHSIRD 74 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~----~G~i~~~~~~i~~ 74 (80)
..+++++||++.+||++||+|.|||||||+.++|.|+.++. +|+|.|+|+++..
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~ 79 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG 79 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhc
Confidence 36999999999999999999999999999999999999887 7999999987543
No 346
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.49 E-value=4.2e-15 Score=119.68 Aligned_cols=62 Identities=23% Similarity=0.490 Sum_probs=56.7
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
.++.+++++.|++ +++|+++||++++|++++|+||||||||||+++|.|+++|++|+|.++|
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 699 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG 699 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC
Confidence 4677788888864 5799999999999999999999999999999999999999999999876
No 347
>KOG0059|consensus
Probab=99.48 E-value=9.6e-15 Score=113.04 Aligned_cols=71 Identities=55% Similarity=0.785 Sum_probs=63.4
Q ss_pred hhhccccccCCCCCcc-ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccccccc
Q psy7220 7 QTVDSHLETFPYDTKP-AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77 (80)
Q Consensus 7 ~~~~~~~~~~~~~~~~-vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~~~~ 77 (80)
..+...++++.|+.+. +++++|+.|++||++|++|+|||||||+++++.|..+|+.|+++++|.++..+.+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~ 634 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTD 634 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccc
Confidence 4556677788887766 9999999999999999999999999999999999999999999999998876444
No 348
>KOG0054|consensus
Probab=99.47 E-value=5.7e-15 Score=117.71 Aligned_cols=67 Identities=24% Similarity=0.416 Sum_probs=61.4
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+++.++++.+|.. ..||+++||.|++||.+||+|++|||||||..+|.++.+|.+|+|.++|.++.+
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISK 1206 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeeccc
Confidence 6777888888865 479999999999999999999999999999999999999999999999998764
No 349
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.47 E-value=8.3e-15 Score=109.61 Aligned_cols=55 Identities=27% Similarity=0.310 Sum_probs=50.2
Q ss_pred CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC---CCceeeeecccc
Q psy7220 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR 73 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~---~G~i~~~~~~i~ 73 (80)
+++++|+++|+++++||+++|+||||||||||+++|+|..++. +|+|.++|.++.
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~ 93 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID 93 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC
Confidence 3578999999999999999999999999999999999998774 799999998754
No 350
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.47 E-value=1e-14 Score=107.44 Aligned_cols=67 Identities=31% Similarity=0.536 Sum_probs=57.3
Q ss_pred hhccccccCCC--CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~--~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.+.++++++.. ..+++++++||++.+||.++||||||||||||.|+|.|.++|.+|.|.++|-++.+
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q 402 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ 402 (580)
T ss_pred eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhc
Confidence 34445555432 34689999999999999999999999999999999999999999999999987654
No 351
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.46 E-value=1.1e-14 Score=102.67 Aligned_cols=54 Identities=37% Similarity=0.601 Sum_probs=50.5
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
...++++||+|++||+++|.|-||||||||+|+++++++|++|+|+++|.++..
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~ 94 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAK 94 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhc
Confidence 356789999999999999999999999999999999999999999999998754
No 352
>PLN03140 ABC transporter G family member; Provisional
Probab=99.45 E-value=1.1e-14 Score=117.12 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=50.7
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC---CCceeeeecccc
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR 73 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~---~G~i~~~~~~i~ 73 (80)
.+.+|+|+|+.+++|++++|+||||||||||+++|+|..+|+ +|+|.++|+++.
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~ 233 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLN 233 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEech
Confidence 467999999999999999999999999999999999999988 999999998764
No 353
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.43 E-value=2e-14 Score=115.12 Aligned_cols=55 Identities=18% Similarity=0.129 Sum_probs=49.9
Q ss_pred CCccccceeeeeeccceeeeeecccCCCceeEeeeeecee----ecCCCceeeeecccc
Q psy7220 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI----KPTSGNAYVMNHSIR 73 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~----~~~~G~i~~~~~~i~ 73 (80)
..+++|+++|+.+++||+++|+||||||||||+++|+|.. +|.+|+|.++|+++.
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~ 130 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPE 130 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehH
Confidence 3467999999999999999999999999999999999986 468999999998764
No 354
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.43 E-value=3.6e-14 Score=86.27 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=43.3
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
..++++++|++++|++++|+||||||||||++++. .|++.+++.++..
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~ 49 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVE 49 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHH
Confidence 57899999999999999999999999999999875 7889999987643
No 355
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.42 E-value=3.9e-14 Score=113.99 Aligned_cols=49 Identities=27% Similarity=0.609 Sum_probs=47.2
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
+++|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g 487 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG 487 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 5699999999999999999999999999999999999999999999876
No 356
>PLN03130 ABC transporter C family member; Provisional
Probab=99.41 E-value=3.2e-14 Score=115.23 Aligned_cols=62 Identities=23% Similarity=0.502 Sum_probs=55.9
Q ss_pred hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC-Cceeeee
Q psy7220 8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVMN 69 (80)
Q Consensus 8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~-G~i~~~~ 69 (80)
.++.+++++.|+. +++|+++||+|++|+.++|+||+|||||||+++|.|+++|++ |+|.+.+
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~ 679 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG 679 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC
Confidence 4777888888863 579999999999999999999999999999999999999999 8988754
No 357
>PLN03140 ABC transporter G family member; Provisional
Probab=99.40 E-value=6.4e-14 Score=112.77 Aligned_cols=55 Identities=24% Similarity=0.380 Sum_probs=49.1
Q ss_pred CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec--CCCceeeeecccc
Q psy7220 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIR 73 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~--~~G~i~~~~~~i~ 73 (80)
+++.+|+++|+.+++|++++|+||||||||||+++|+|..++ .+|+|.++|++..
T Consensus 891 ~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~ 947 (1470)
T PLN03140 891 DRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 947 (1470)
T ss_pred CCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCC
Confidence 345799999999999999999999999999999999998763 6899999997653
No 358
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=5.5e-14 Score=91.31 Aligned_cols=64 Identities=19% Similarity=0.387 Sum_probs=56.3
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC---CCceeeeecccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR 73 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~---~G~i~~~~~~i~ 73 (80)
.+.+++...+++-.|-++||+|.+||++.|.||+|||||||+..+.|.+.++ +|+++++++++.
T Consensus 4 ~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~ 70 (213)
T COG4136 4 CLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD 70 (213)
T ss_pred eeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecc
Confidence 4456677778889999999999999999999999999999999999988764 799999998764
No 359
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.39 E-value=1.1e-13 Score=91.42 Aligned_cols=50 Identities=32% Similarity=0.572 Sum_probs=47.3
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
-++++++||+++.|||+++-||+|+||||++++|.+-+.|++|+|.+..+
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~ 73 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHE 73 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeC
Confidence 47999999999999999999999999999999999999999999998654
No 360
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.38 E-value=7.7e-14 Score=102.47 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=46.7
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCC-ceeeeeccccc
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHSIRD 74 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G-~i~~~~~~i~~ 74 (80)
..+|+++|+++++||+++|+||||||||||++ .++..|++| +|.++|+++..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence 36899999999999999999999999999999 677788888 79999988753
No 361
>PTZ00243 ABC transporter; Provisional
Probab=99.38 E-value=9.9e-14 Score=112.10 Aligned_cols=52 Identities=25% Similarity=0.424 Sum_probs=47.9
Q ss_pred CCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68 (80)
Q Consensus 17 ~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~ 68 (80)
.++++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+.
T Consensus 669 ~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~ 720 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE 720 (1560)
T ss_pred ccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence 3456679999999999999999999999999999999999999999998874
No 362
>PLN03232 ABC transporter C family member; Provisional
Probab=99.37 E-value=1.1e-13 Score=111.50 Aligned_cols=59 Identities=20% Similarity=0.446 Sum_probs=52.7
Q ss_pred hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCcee
Q psy7220 8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66 (80)
Q Consensus 8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~ 66 (80)
.++.+++++.|+. +++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|.+.
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~ 675 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV 675 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE
Confidence 4677888888863 5799999999999999999999999999999999999999988653
No 363
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.37 E-value=1.2e-13 Score=90.84 Aligned_cols=63 Identities=25% Similarity=0.373 Sum_probs=58.8
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
+.+.++++.|+.+.+|.||+|+-++||.++++||+|+|||||+|.|+-+.-|.+|+..+.|..
T Consensus 3 irv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~ 65 (242)
T COG4161 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNH 65 (242)
T ss_pred eEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccc
Confidence 567788999999999999999999999999999999999999999999999999999997754
No 364
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.4e-13 Score=99.88 Aligned_cols=67 Identities=33% Similarity=0.533 Sum_probs=60.3
Q ss_pred hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.+...++.+.|. ++++|+++||.+++|+.++++|++|+||||++++|.+++++.+|.|.++|++++.
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~ 329 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRD 329 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHH
Confidence 455666777774 5789999999999999999999999999999999999999999999999998753
No 365
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.22 E-value=2.3e-12 Score=93.58 Aligned_cols=53 Identities=32% Similarity=0.428 Sum_probs=49.6
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
..+++++||++++|+.+||+|+||||||||-++|.++++++ |+|.|.|+++..
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 46999999999999999999999999999999999999876 999999998763
No 366
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.22 E-value=2e-12 Score=86.42 Aligned_cols=35 Identities=14% Similarity=0.309 Sum_probs=31.8
Q ss_pred CCCCccccceeeeeeccceeeeeecccCCCceeEe
Q psy7220 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF 51 (80)
Q Consensus 17 ~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll 51 (80)
+..+..+|+++||+|++||+++|+|+||||||||+
T Consensus 4 ~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 4 RGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred ccchhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 34456799999999999999999999999999996
No 367
>KOG2355|consensus
Probab=99.19 E-value=5.7e-12 Score=85.37 Aligned_cols=64 Identities=30% Similarity=0.438 Sum_probs=56.2
Q ss_pred hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
.+++.+++|.|.. .+++.++|++++.|...-++|.||||||||+++|+|-.-...|.|.+.|++
T Consensus 13 aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgrs 77 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRS 77 (291)
T ss_pred eEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcC
Confidence 5778888888854 589999999999999999999999999999999999876667888887765
No 368
>KOG0061|consensus
Probab=99.19 E-value=3.5e-12 Score=95.87 Aligned_cols=52 Identities=29% Similarity=0.451 Sum_probs=48.0
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec---CCCceeeeecc
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP---TSGNAYVMNHS 71 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~---~~G~i~~~~~~ 71 (80)
.+++|+++|..+++||+.||+||+|||||||+++|+|-... .+|+|.+||++
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~ 96 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP 96 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc
Confidence 47899999999999999999999999999999999998864 68999999954
No 369
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.15 E-value=6.5e-12 Score=83.90 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=30.7
Q ss_pred CCCCCccccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 16 ~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~ 55 (80)
+.|++..++++++ +++++|+||||||||||+++|+
T Consensus 10 ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 10 KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHH
Confidence 3577778888876 7899999999999999999997
No 370
>KOG0927|consensus
Probab=99.14 E-value=8.6e-12 Score=92.63 Aligned_cols=63 Identities=30% Similarity=0.531 Sum_probs=55.1
Q ss_pred hhccccccCCCCCc-cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 8 TVDSHLETFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 8 ~~~~~~~~~~~~~~-~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
-+...++.|.|.+. .++++++|.|..++.+++|||||+|||||++++.|.+.|+.|.+....+
T Consensus 389 vi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H 452 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH 452 (614)
T ss_pred eEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc
Confidence 45557778888665 6889999999999999999999999999999999999999998876543
No 371
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.13 E-value=4.8e-12 Score=88.67 Aligned_cols=35 Identities=37% Similarity=0.651 Sum_probs=32.8
Q ss_pred eecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 39 iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~ 35 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVT 35 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECC
Confidence 68999999999999999999999999999998764
No 372
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.12 E-value=9.7e-12 Score=90.42 Aligned_cols=55 Identities=31% Similarity=0.465 Sum_probs=48.9
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeeccccc
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD 74 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~~ 74 (80)
...+++++||+|++||.++|+|+||||||-....+.++++. .+|+|.|+|+++-.
T Consensus 22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 57899999999999999999999999999999999998864 36899999988643
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.11 E-value=6.4e-12 Score=82.74 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=39.1
Q ss_pred ceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC---------Cceeeeeccc
Q psy7220 25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---------GNAYVMNHSI 72 (80)
Q Consensus 25 ~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~---------G~i~~~~~~i 72 (80)
+++++++++| +++|+||||||||||+++|+++.++.. |++.+.+++.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~ 69 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSET 69 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCC
Confidence 6789999999 999999999999999999999876553 3566666554
No 374
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.10 E-value=1.5e-11 Score=92.25 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=52.0
Q ss_pred hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220 8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68 (80)
Q Consensus 8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~ 68 (80)
.+++++++..-+ +++.+++.+|++++||.+-|.|+||||||||+|+|+|+.|-.+|+|..-
T Consensus 392 ~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P 453 (604)
T COG4178 392 GITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP 453 (604)
T ss_pred eeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC
Confidence 455566665443 3689999999999999999999999999999999999999988987654
No 375
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.09 E-value=2.2e-11 Score=85.16 Aligned_cols=49 Identities=24% Similarity=0.454 Sum_probs=45.5
Q ss_pred eeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+++|+.+...+++|-|+|||||||++++++|+.+|++|.|.++|+.+.+
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~D 64 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVD 64 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeec
Confidence 7889999989999999999999999999999999999999999976544
No 376
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.07 E-value=2.4e-11 Score=80.74 Aligned_cols=51 Identities=29% Similarity=0.437 Sum_probs=45.8
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
=|-.+|.++..||++=++||||||||||+-.++|+. |.+|+|.+.|.++..
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~ 64 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEA 64 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhH
Confidence 456889999999999999999999999999999986 578999999988653
No 377
>KOG0927|consensus
Probab=99.03 E-value=5.2e-11 Score=88.53 Aligned_cols=57 Identities=23% Similarity=0.514 Sum_probs=52.2
Q ss_pred hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCC
Q psy7220 7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63 (80)
Q Consensus 7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G 63 (80)
.++.+.++++.|.+..+++|..|++.+|+.+||+|+|||||||+|+++.+-..|..-
T Consensus 74 ~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~ 130 (614)
T KOG0927|consen 74 RDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPE 130 (614)
T ss_pred ccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCc
Confidence 378888999999999999999999999999999999999999999999988776543
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.00 E-value=4.2e-11 Score=79.65 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=35.4
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~ 55 (80)
.+++++.. .|++..+++++++ ++++|+|||||||||++++|.
T Consensus 5 ~l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 5 KLVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred EEEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH
Confidence 45555544 6788889998887 899999999999999999987
No 379
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.00 E-value=2.9e-11 Score=78.64 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=42.1
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
...+-+.+.+++|+.++|+||||||||||+++|+++++|+.|.+.+.+
T Consensus 13 ~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 13 LQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 345556678899999999999999999999999999999989888865
No 380
>KOG0060|consensus
Probab=98.95 E-value=2.3e-10 Score=85.68 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=44.3
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~ 67 (80)
+..+++++||+|++|+.+-|.||||||||+|+|++.|+++...|.+..
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k 494 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTK 494 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEe
Confidence 456889999999999999999999999999999999999988888764
No 381
>KOG0064|consensus
Probab=98.93 E-value=2e-10 Score=85.83 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=42.8
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~ 67 (80)
...++..++|+|++|-.+-|+||||||||+|+|+|.|++|...|..+.
T Consensus 494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~ 541 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI 541 (728)
T ss_pred cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec
Confidence 456889999999999999999999999999999999999987775543
No 382
>KOG0066|consensus
Probab=98.92 E-value=1.5e-10 Score=85.50 Aligned_cols=61 Identities=31% Similarity=0.589 Sum_probs=54.7
Q ss_pred hhccccccCCC-CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220 8 TVDSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68 (80)
Q Consensus 8 ~~~~~~~~~~~-~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~ 68 (80)
.+-+|+++|.| +.++++.+++|-|.--..++|+||||.|||||+++|.|-+.|..|+..-+
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn 647 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN 647 (807)
T ss_pred eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc
Confidence 45568889999 66789999999999999999999999999999999999999999976544
No 383
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.92 E-value=3e-10 Score=75.14 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=35.1
Q ss_pred hhhccccccCCCCCccccceeeeeec-cceeeeeecccCCCceeEeeeeece
Q psy7220 7 QTVDSHLETFPYDTKPAVNQISFGVG-RGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 7 ~~~~~~~~~~~~~~~~vl~~isl~i~-~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
..+++++.. .|.+. ++++|... +|++++|+||||||||||+++|++.
T Consensus 4 ~~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~ 51 (213)
T cd03279 4 LKLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYA 51 (213)
T ss_pred EEEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheee
Confidence 355666655 44333 56667654 5899999999999999999999953
No 384
>KOG0054|consensus
Probab=98.92 E-value=2.8e-10 Score=91.43 Aligned_cols=62 Identities=23% Similarity=0.528 Sum_probs=52.8
Q ss_pred hccccccCCCC---CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 9 VDSHLETFPYD---TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 9 ~~~~~~~~~~~---~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
+++++.++..+ ..+.|+|+||+|++|+.++|+|+.|||||+|+.+|.|..+..+|++.++|.
T Consensus 519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs 583 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS 583 (1381)
T ss_pred EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe
Confidence 44455555432 345999999999999999999999999999999999999999999999874
No 385
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.89 E-value=3.1e-10 Score=83.04 Aligned_cols=49 Identities=31% Similarity=0.587 Sum_probs=43.2
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeecee--------ecCCCceeee
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--------KPTSGNAYVM 68 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~--------~~~~G~i~~~ 68 (80)
...+++|++|.+++||+++|+|+||+||||+++++.|.. +|++|.+.+-
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence 457999999999999999999999999999999999874 4778877653
No 386
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.89 E-value=3.4e-10 Score=74.27 Aligned_cols=41 Identities=29% Similarity=0.449 Sum_probs=34.1
Q ss_pred ccceeeeeeccce-eeeeecccCCCceeEeeeee--------ceeecCCC
Q psy7220 23 AVNQISFGVGRGE-CFGLLGLNGAGKTTTFKMLT--------GAIKPTSG 63 (80)
Q Consensus 23 vl~~isl~i~~g~-~~~iiG~nGsGKsTll~~l~--------gl~~~~~G 63 (80)
.+.++||++.+|+ +++|+||||+|||||++++. |.+-|...
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~ 65 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE 65 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc
Confidence 4458999999995 79999999999999999998 75555443
No 387
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.88 E-value=3.1e-10 Score=74.95 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=31.7
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+..++++++++. |++++|+||||||||||+++|++..
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence 456788888775 6999999999999999999998754
No 388
>KOG0062|consensus
Probab=98.88 E-value=1.6e-10 Score=85.53 Aligned_cols=51 Identities=25% Similarity=0.489 Sum_probs=47.0
Q ss_pred hhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220 6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
-.|+.+.+....|+++.+|++-++++..|..+|++|+||+|||||||+|+.
T Consensus 78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 346777788889999999999999999999999999999999999999986
No 389
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.87 E-value=3.6e-10 Score=82.49 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=47.3
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
+..+++++ |.+.+|++++|+|+||+|||||+++|+++.+++.|.|.+.|++-
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg 196 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERG 196 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCC
Confidence 35689999 99999999999999999999999999999999999999876554
No 390
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.82 E-value=7.8e-10 Score=80.96 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=48.6
Q ss_pred ccccccCCC-CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 10 DSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 10 ~~~~~~~~~-~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
+...++..| .+..+++.++ .+.+|++++|+|+||||||||+++|+++.+|+.|.+.+.|
T Consensus 141 ~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liG 200 (450)
T PRK06002 141 TRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVG 200 (450)
T ss_pred EeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecc
Confidence 334444445 3457888885 9999999999999999999999999999999999888864
No 391
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.81 E-value=7e-10 Score=80.90 Aligned_cols=52 Identities=23% Similarity=0.379 Sum_probs=47.1
Q ss_pred CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
.+..+++++ +.+.+|++++|+|+||+|||||+++|++...++.+.+.+.|++
T Consensus 141 tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 141 TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 356899999 9999999999999999999999999999999998888777764
No 392
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.81 E-value=4e-10 Score=76.08 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=30.6
Q ss_pred ceeeeeecccCCCceeEeeeeeceeecC-CCceeeeec
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNH 70 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~~~~-~G~i~~~~~ 70 (80)
..+++|+|||||||||++++|++++.+. .|++.+.+.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~ 62 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNL 62 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCH
Confidence 5589999999999999999999998775 356666544
No 393
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.81 E-value=9.3e-10 Score=80.28 Aligned_cols=42 Identities=26% Similarity=0.489 Sum_probs=38.9
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 62 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~ 62 (80)
+..+++++ |.+.+|++++|+|+||+|||||+++|+++.+++.
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv 183 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADV 183 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCe
Confidence 35799999 9999999999999999999999999999988765
No 394
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.79 E-value=8.2e-10 Score=76.24 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=36.5
Q ss_pred eeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
..++|+||||||||||+++|+|+++|++|++.++|+++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEee
Confidence 568999999999999999999999999999999998874
No 395
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.78 E-value=9.1e-10 Score=81.59 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=53.9
Q ss_pred cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++...++++.+++.+++.+..|+.+.++|+||+|||||++.|.|+++|.+|+..+....+.
T Consensus 189 d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred CeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 4555667778999999999999999999999999999999999999999999888766543
No 396
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.77 E-value=1.1e-09 Score=77.38 Aligned_cols=51 Identities=20% Similarity=0.407 Sum_probs=45.7
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
+..+++.+ +.+.+|++++|+|+||+|||||+++|++...++.|.+...|++
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 45789999 9999999999999999999999999999999988877776643
No 397
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.76 E-value=1.4e-09 Score=72.23 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=34.9
Q ss_pred CCccccceeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
....+.+++++++++|++++|+||||+||||++++++++
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999999999999999998743
No 398
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.75 E-value=1.7e-09 Score=72.79 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=42.3
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeec-eeecCCCceeee
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG-AIKPTSGNAYVM 68 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g-l~~~~~G~i~~~ 68 (80)
..+.+++++.+.+|++++|.||||+||||+++++++ .+.+..|...+.
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a 66 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA 66 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence 568899999999999999999999999999999998 566777766654
No 399
>PRK08149 ATP synthase SpaL; Validated
Probab=98.73 E-value=2e-09 Score=78.39 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=46.1
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC---Cceeeeecccc
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---GNAYVMNHSIR 73 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~---G~i~~~~~~i~ 73 (80)
+..+++++ +.+.+|++++|+|+||+|||||+++|++...++. |.|...++++.
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~ 193 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVT 193 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHH
Confidence 35799999 9999999999999999999999999999887765 67777776654
No 400
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.73 E-value=1.5e-09 Score=79.38 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=47.4
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
+..+++++ +.+.+|++++|+|+||+|||||++++++...++.|.+.+.|++-
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~ 201 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERG 201 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccCh
Confidence 45799999 99999999999999999999999999999999989888888653
No 401
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.72 E-value=1.5e-09 Score=78.92 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=46.4
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
..+++ .+|.+.+|++++|+|+||+|||||+++|++..+|+.|.+.+.|++-.+
T Consensus 128 i~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~e 180 (418)
T TIGR03498 128 VRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGRE 180 (418)
T ss_pred cEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeechH
Confidence 45664 699999999999999999999999999999999999988888875443
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.72 E-value=2.4e-09 Score=78.94 Aligned_cols=43 Identities=44% Similarity=0.743 Sum_probs=36.4
Q ss_pred cccceeeeeec-----cceeeeeecccCCCceeEeeeeeceeecCCCc
Q psy7220 22 PAVNQISFGVG-----RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64 (80)
Q Consensus 22 ~vl~~isl~i~-----~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~ 64 (80)
..+.++.|++. .||+++++||||-|||||.++|+|.++|++|.
T Consensus 350 k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~ 397 (591)
T COG1245 350 KTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS 397 (591)
T ss_pred eecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence 35556666655 56779999999999999999999999999995
No 403
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.71 E-value=1.4e-09 Score=71.42 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=27.4
Q ss_pred ceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220 25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 25 ~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
-..++++.+|++++|+||||||||||++++++
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 34556666899999999999999999999983
No 404
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.70 E-value=2.9e-09 Score=70.39 Aligned_cols=38 Identities=34% Similarity=0.411 Sum_probs=30.8
Q ss_pred eeeeccceeeeeecccCCCceeEeeee----eceeecCCCcee
Q psy7220 28 SFGVGRGECFGLLGLNGAGKTTTFKML----TGAIKPTSGNAY 66 (80)
Q Consensus 28 sl~i~~g~~~~iiG~nGsGKsTll~~l----~gl~~~~~G~i~ 66 (80)
++++.+| +++|+||||||||||+++| .|..+|..|.+.
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~ 58 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGA 58 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccccccc
Confidence 3455566 9999999999999999998 488887777554
No 405
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.67 E-value=3.1e-09 Score=77.16 Aligned_cols=54 Identities=20% Similarity=0.396 Sum_probs=48.0
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+..+++++ +.+.+|++++|+|++|+|||||+++|++..+++.|.+.+.|++..+
T Consensus 124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~e 177 (413)
T TIGR03497 124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGRE 177 (413)
T ss_pred cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHH
Confidence 45789999 9999999999999999999999999999999998988887766543
No 406
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.66 E-value=3.1e-09 Score=77.26 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=45.9
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
+..+++++ |.+.+|++++|+|+||+|||||+++|++...++.|.+...|++
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~ 182 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGER 182 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccC
Confidence 45799999 9999999999999999999999999999999988888775543
No 407
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.66 E-value=6.8e-09 Score=76.48 Aligned_cols=63 Identities=25% Similarity=0.446 Sum_probs=54.5
Q ss_pred ccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 10 DSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 10 ~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
++++++..... .+.+.++||++++||++||.|-.|.|.+.|+.+|+|+.++.+|+|.++|+++
T Consensus 259 ~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v 322 (501)
T COG3845 259 EVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDV 322 (501)
T ss_pred EEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEec
Confidence 34445544332 4789999999999999999999999999999999999998899999999986
No 408
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.64 E-value=3.9e-09 Score=68.84 Aligned_cols=28 Identities=39% Similarity=0.380 Sum_probs=26.0
Q ss_pred ccceeeeeecccCCCceeEeeeeeceee
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
++|++++|+||+|||||||++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999998874
No 409
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.64 E-value=4.1e-09 Score=77.02 Aligned_cols=51 Identities=18% Similarity=0.394 Sum_probs=45.1
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
+..+++.+ +.+.+|++++|+|+||+|||||+++|++..+++.+.+...|++
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r 200 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER 200 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 35789999 9999999999999999999999999999998888777766554
No 410
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.63 E-value=4.3e-09 Score=69.28 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=26.9
Q ss_pred ccceeeeeecccCCCceeEeeeeeceeec
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAIKP 60 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~ 60 (80)
++|++++|+|+||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 68999999999999999999999998765
No 411
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.61 E-value=3.9e-09 Score=73.60 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=38.0
Q ss_pred eeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68 (80)
Q Consensus 27 isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~ 68 (80)
+++.++.|+.+.|+|++|||||||+++|++++++..+.+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence 567788999999999999999999999999999888877775
No 412
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.61 E-value=6.1e-09 Score=67.56 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=28.0
Q ss_pred ceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
|++++|+|||||||||++++|++...+ .+.+.+..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~ 36 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRY 36 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEE
Confidence 689999999999999999999987654 35554433
No 413
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.60 E-value=5.3e-09 Score=69.93 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=31.7
Q ss_pred eccceeeeeecccCCCceeEeeeeeceeecCCCce
Q psy7220 31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65 (80)
Q Consensus 31 i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i 65 (80)
-.+..+++|.|+||||||||++.|++++++..|.+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 35678999999999999999999999999998983
No 414
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.59 E-value=6.4e-09 Score=67.50 Aligned_cols=35 Identities=20% Similarity=0.450 Sum_probs=29.6
Q ss_pred cceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
+|++++|+|+|||||||++++|++++.+ +.+++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~ 36 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDD 36 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcc
Confidence 5899999999999999999999998765 4555554
No 415
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.59 E-value=1.1e-08 Score=84.09 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=41.7
Q ss_pred cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
.+...+.....|++++|++++|++++|+|+||||||||+..+ ++. .|++.+..
T Consensus 940 ~i~i~~~~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~~~~e 992 (1809)
T PRK00635 940 DITIKNAYQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNIAYAE 992 (1809)
T ss_pred eEEEeccccccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccEeeec
Confidence 344444545679999999999999999999999999977655 333 78887764
No 416
>KOG0065|consensus
Probab=98.58 E-value=7.1e-09 Score=83.05 Aligned_cols=55 Identities=27% Similarity=0.375 Sum_probs=47.9
Q ss_pred CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee--cCCCceeeeecccc
Q psy7220 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--PTSGNAYVMNHSIR 73 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~--~~~G~i~~~~~~i~ 73 (80)
+.+++|++++=-++||-.+||+|+|||||||||++|+|=.. ..+|+|.++|.+..
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~ 858 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD 858 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc
Confidence 45789999999999999999999999999999999998432 24689999998865
No 417
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.57 E-value=7.1e-09 Score=75.24 Aligned_cols=51 Identities=24% Similarity=0.388 Sum_probs=44.7
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
+..+++.+ |.+.+|++++|+|+||+|||||+++|++...++.+.+...|++
T Consensus 124 Gi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer 174 (411)
T TIGR03496 124 GVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER 174 (411)
T ss_pred eEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence 45788888 9999999999999999999999999999998887776666654
No 418
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.56 E-value=5.2e-09 Score=58.04 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=28.8
Q ss_pred ceeeeeecc-ceeeeeecccCCCceeEeeeeeceeecCC
Q psy7220 25 NQISFGVGR-GECFGLLGLNGAGKTTTFKMLTGAIKPTS 62 (80)
Q Consensus 25 ~~isl~i~~-g~~~~iiG~nGsGKsTll~~l~gl~~~~~ 62 (80)
++.++++.+ |+++.|.|+|||||||++.++.-++-+..
T Consensus 13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 344555654 56899999999999999998876665543
No 419
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.55 E-value=1.1e-08 Score=75.00 Aligned_cols=52 Identities=27% Similarity=0.470 Sum_probs=43.9
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC---Cceeeeeccccc
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---GNAYVMNHSIRD 74 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~---G~i~~~~~~i~~ 74 (80)
.+++.+ |.+.+|++++|+|+||+|||||+++|+++.+++. |.|.+.++++.+
T Consensus 164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e 218 (455)
T PRK07960 164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKD 218 (455)
T ss_pred eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHH
Confidence 455444 9999999999999999999999999999988875 777777777643
No 420
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.54 E-value=1e-08 Score=74.82 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=45.7
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
..+++.+ |.+.+|+.++|+|++|+|||||+++|++..+++.|.+.+.|++..
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ 195 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR 195 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc
Confidence 4577774 999999999999999999999999999999999998887776543
No 421
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.53 E-value=1.5e-08 Score=70.74 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=33.0
Q ss_pred ccceeeeeecccCCCceeEeeeeeceee--cCCCceeeeecc
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAIK--PTSGNAYVMNHS 71 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~--~~~G~i~~~~~~ 71 (80)
+.-.++||.|+||||||||+++|.+++. |.+|.+.+-+.+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D 101 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD 101 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence 4557999999999999999999999887 667887764443
No 422
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.52 E-value=1.9e-08 Score=69.16 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=30.9
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeee
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l 54 (80)
..-|++++++|+.|.+++|.|+||||||||++.+
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 3468999999999999999999999999999744
No 423
>PRK05922 type III secretion system ATPase; Validated
Probab=98.52 E-value=2e-08 Score=73.35 Aligned_cols=50 Identities=18% Similarity=0.389 Sum_probs=42.9
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
-.+++.+ +.+.+|+.++|+|+||+|||||+++|++..+++.|.+...|+.
T Consensus 145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGer 194 (434)
T PRK05922 145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGER 194 (434)
T ss_pred ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCC
Confidence 3567665 9999999999999999999999999999988888887665543
No 424
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.52 E-value=1.6e-08 Score=67.52 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=31.9
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
...+.++++++..+ ++++|+||||+|||||++++++
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence 34588999999887 9999999999999999999853
No 425
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.52 E-value=2e-08 Score=74.40 Aligned_cols=51 Identities=37% Similarity=0.592 Sum_probs=48.4
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++||++++||++||.|--|||+|-++++|.|..++.+|+|.++|+++.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~ 324 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVR 324 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEcc
Confidence 588999999999999999999999999999999999999999999998764
No 426
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.50 E-value=1.6e-08 Score=68.34 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=28.0
Q ss_pred eeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~ 67 (80)
.+++|+|||||||||++.+|+++..+..|++..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~ 55 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRS 55 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccc
Confidence 389999999999999999999988766665544
No 427
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.50 E-value=1.1e-08 Score=74.64 Aligned_cols=53 Identities=17% Similarity=0.330 Sum_probs=46.1
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+..+++++ +.+.+|++++|+|+||+|||||+++|++...++.+.+...|++-.
T Consensus 144 gi~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergr 196 (434)
T PRK08472 144 GVKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGR 196 (434)
T ss_pred hhHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccch
Confidence 35689999 999999999999999999999999999988777788877776543
No 428
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.49 E-value=2e-08 Score=74.43 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=49.9
Q ss_pred CCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 18 ~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++..+.+.+++.+..|+.+.++||+|+|||||++.+.++.+|.+|++.+....+.
T Consensus 195 ~Gq~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~ 250 (499)
T TIGR00368 195 KGQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIW 250 (499)
T ss_pred cCcHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccc
Confidence 45667889999999999999999999999999999999999999998888766653
No 429
>PLN02796 D-glycerate 3-kinase
Probab=98.48 E-value=6.2e-09 Score=74.19 Aligned_cols=52 Identities=19% Similarity=0.184 Sum_probs=42.1
Q ss_pred ccccceeeeee---cccee-----eeeecccCCCceeEeeeeeceeecC---CCceeeeeccc
Q psy7220 21 KPAVNQISFGV---GRGEC-----FGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSI 72 (80)
Q Consensus 21 ~~vl~~isl~i---~~g~~-----~~iiG~nGsGKsTll~~l~gl~~~~---~G~i~~~~~~i 72 (80)
..+++++++.+ ++|+. +||+|++|||||||++.|.+++.+. .|.+.+++..+
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 35778888887 56665 9999999999999999999998764 46777777554
No 430
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.48 E-value=1.9e-08 Score=73.80 Aligned_cols=41 Identities=29% Similarity=0.516 Sum_probs=37.4
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 61 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~ 61 (80)
+..+++.+ |.+.+|++++|+|+||+|||||+++|+++..++
T Consensus 155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d 195 (451)
T PRK05688 155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD 195 (451)
T ss_pred ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45789999 999999999999999999999999999987664
No 431
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.47 E-value=4e-08 Score=67.25 Aligned_cols=56 Identities=27% Similarity=0.433 Sum_probs=44.2
Q ss_pred eeehhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220 3 VTSLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
..+|+++.+...+ .-+...+++++|+++.+||+-|++|.+|||||-..++++|..+
T Consensus 3 LLDIrnL~IE~~T-sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~k 58 (330)
T COG4170 3 LLDIRNLTIEFKT-SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK 58 (330)
T ss_pred cccccceEEEEec-CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccc
Confidence 3445544444322 2355679999999999999999999999999999999999865
No 432
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.45 E-value=5.4e-08 Score=71.28 Aligned_cols=48 Identities=17% Similarity=0.368 Sum_probs=40.1
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-CCCceeeee
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMN 69 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-~~G~i~~~~ 69 (80)
..+++.+ |.+.+|+.++|+|+||+|||||+++|+++.++ +.+.+.+.|
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG 200 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG 200 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence 4688887 99999999999999999999999999998744 335566544
No 433
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.44 E-value=4.3e-08 Score=65.70 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=33.0
Q ss_pred CCccccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~ 55 (80)
+...+.+++++++++++++.|.||||+||||+++.++
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 3456899999999999999999999999999998753
No 434
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.44 E-value=3.2e-08 Score=72.48 Aligned_cols=40 Identities=30% Similarity=0.554 Sum_probs=35.5
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 61 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~ 61 (80)
..+++.+ +.+.+|++++|+|+||+|||||+++|++...++
T Consensus 150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 4577777 999999999999999999999999999976654
No 435
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.43 E-value=2.2e-08 Score=73.95 Aligned_cols=42 Identities=31% Similarity=0.415 Sum_probs=35.9
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCc
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~ 64 (80)
++++.++.+++|.+++|+||||+||||++..|++.+....|.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~ 286 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA 286 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence 556677778899999999999999999999999988766664
No 436
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.42 E-value=5.3e-08 Score=76.41 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=29.5
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEee
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFK 52 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~ 52 (80)
..|+++||+|++|++++|+|+||||||||++
T Consensus 621 ~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 621 NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 4699999999999999999999999999997
No 437
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.39 E-value=9.8e-08 Score=69.39 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=45.8
Q ss_pred hhccccccCCCCC-ccccc-----------eeeeeeccceeeeeecccCCCceeEeeeeeceeec
Q psy7220 8 TVDSHLETFPYDT-KPAVN-----------QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60 (80)
Q Consensus 8 ~~~~~~~~~~~~~-~~vl~-----------~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~ 60 (80)
.++..++++.|.+ +.+|+ |+.+.|.+|+.++|+||.|+||||+++.|...+..
T Consensus 130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 5677888988854 56886 99999999999999999999999999998886543
No 438
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.39 E-value=4.8e-08 Score=68.77 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=37.4
Q ss_pred ccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++++++++||||+||||++..|++.+.+..++|.+.+.+..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 578999999999999999999999999888789998776653
No 439
>PRK01889 GTPase RsgA; Reviewed
Probab=98.39 E-value=2.2e-08 Score=71.24 Aligned_cols=48 Identities=23% Similarity=0.352 Sum_probs=41.7
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
-++.+.-.+++|++++|+|+||+|||||++.|.|...+..|++.+++.
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~ 231 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDS 231 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCC
Confidence 355566667889999999999999999999999999999999998653
No 440
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.38 E-value=8.5e-08 Score=78.11 Aligned_cols=47 Identities=28% Similarity=0.262 Sum_probs=39.8
Q ss_pred cceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 24 l~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
+.+..|.+.+| +++|+|+|||||||++++|++++.|..|.+.+++..
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~ 64 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence 34556777775 899999999999999999999999998999888654
No 441
>PRK06936 type III secretion system ATPase; Provisional
Probab=98.38 E-value=6.2e-08 Score=70.90 Aligned_cols=42 Identities=19% Similarity=0.401 Sum_probs=38.0
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 62 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~ 62 (80)
+..+++++ +.+.+|++++|+|+||+|||||++++++...++-
T Consensus 149 Gi~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv 190 (439)
T PRK06936 149 GVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV 190 (439)
T ss_pred Ccceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence 34689999 9999999999999999999999999999887653
No 442
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.36 E-value=9.7e-08 Score=78.74 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=29.9
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEee
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFK 52 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~ 52 (80)
..|+++||+|++|++++|+|+||||||||++
T Consensus 609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 4799999999999999999999999999998
No 443
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.36 E-value=7.5e-08 Score=61.65 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=26.2
Q ss_pred ceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~ 67 (80)
|++++|+|||||||||+++.|+..+.+. |.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~ 33 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHF 33 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEE
Confidence 5688999999999999999998876543 44443
No 444
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.36 E-value=5e-08 Score=65.32 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=26.5
Q ss_pred eeeeecccCCCceeEeeeeeceeec--CCCceee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYV 67 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~~~--~~G~i~~ 67 (80)
++||.|+||||||||++.|.+++.+ ..+.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 5799999999999999999998865 4455554
No 445
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.35 E-value=4e-08 Score=62.91 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=28.8
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
+|+++++..++..+ +|+|++|||||||++.+.+
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 67888888777765 8999999999999999887
No 446
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.35 E-value=6.1e-08 Score=74.81 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=39.1
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCC--ceeeee
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMN 69 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G--~i~~~~ 69 (80)
+++++.++.+++|++++++||||+||||++..|++.+....| .|.+-.
T Consensus 173 ~il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit 222 (767)
T PRK14723 173 PVLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLT 222 (767)
T ss_pred hhccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEec
Confidence 356778888888999999999999999999999998766665 455543
No 447
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.35 E-value=9e-08 Score=71.21 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=43.7
Q ss_pred cCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeee---ceeecCCCceee
Q psy7220 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAYV 67 (80)
Q Consensus 15 ~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~---gl~~~~~G~i~~ 67 (80)
..++++..+++|+.+.+ ++.+++|.||+||||||+.+.|+ |+...+.|.+|-
T Consensus 266 A~~~g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR 320 (512)
T PRK13477 266 AVRCGSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYR 320 (512)
T ss_pred EEEeCCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceeh
Confidence 34567888999999988 88999999999999999999998 666667776663
No 448
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.34 E-value=7.1e-08 Score=62.81 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=24.7
Q ss_pred eeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~ 68 (80)
+++|+|++|||||||.++|.+++ ..+.+.+-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~ 31 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVII 31 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEE
Confidence 47999999999999999999987 23444433
No 449
>PRK06820 type III secretion system ATPase; Validated
Probab=98.32 E-value=1.5e-07 Score=68.89 Aligned_cols=50 Identities=22% Similarity=0.366 Sum_probs=41.7
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
+..+++.+ +.+.+|+.++|+|+||+|||||+++|++...++...+-.-|+
T Consensus 150 Gi~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGe 199 (440)
T PRK06820 150 GIRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGE 199 (440)
T ss_pred CCceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEcc
Confidence 35799999 999999999999999999999999999988776544433333
No 450
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.30 E-value=7.6e-08 Score=66.43 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=27.1
Q ss_pred eeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~ 67 (80)
+++|+|+||||||||++.|++++++..+.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~ 32 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVIC 32 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEE
Confidence 47999999999999999999999877664443
No 451
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.30 E-value=1.1e-07 Score=60.62 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=26.9
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.+++.++++.+| +.+|+||||+||||++.+|.-.+
T Consensus 9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 346777888776 88899999999999998886544
No 452
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.29 E-value=1.4e-07 Score=62.82 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=25.4
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~ 55 (80)
.+=+++++.=..+.++.|+||||+|||||++.+.
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHH
Confidence 3445555542223789999999999999999987
No 453
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.28 E-value=1.9e-07 Score=75.21 Aligned_cols=38 Identities=42% Similarity=0.632 Sum_probs=31.9
Q ss_pred eeeeeecccCCCceeEeeee----eceeecC-CCceeeeeccc
Q psy7220 35 ECFGLLGLNGAGKTTTFKML----TGAIKPT-SGNAYVMNHSI 72 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l----~gl~~~~-~G~i~~~~~~i 72 (80)
.+++|+|||||||||++.+| .|..+|. .|.+.+.+..+
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~ 71 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKV 71 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCc
Confidence 48999999999999999998 5988885 68877766543
No 454
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.27 E-value=2e-07 Score=73.43 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=30.5
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeee
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l 54 (80)
..|+++||+|++|++++|+|+||||||||++.+
T Consensus 623 ~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~ 655 (943)
T PRK00349 623 NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINET 655 (943)
T ss_pred CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence 368999999999999999999999999999764
No 455
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.26 E-value=1.6e-07 Score=59.02 Aligned_cols=36 Identities=39% Similarity=0.518 Sum_probs=28.3
Q ss_pred eeeeeecccCCCceeEeeeeece----eecCCC----ceeeeec
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGA----IKPTSG----NAYVMNH 70 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl----~~~~~G----~i~~~~~ 70 (80)
-.++|+|++|||||||++.+.+. ..|+.| .+.+++.
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~ 58 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGF 58 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCE
Confidence 34889999999999999999996 456777 5555443
No 456
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.26 E-value=1.1e-07 Score=60.73 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=23.3
Q ss_pred ceeeeeecccCCCceeEeeeeeceee
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
|++++|+|||||||||+++.|++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 67899999999999999999988653
No 457
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.25 E-value=1.9e-07 Score=61.51 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=27.1
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
.++++++++.+| +.+|+||||+||||++.+|.-
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~ 43 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTI 43 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHH
Confidence 346677888777 778999999999999988863
No 458
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.23 E-value=1.4e-07 Score=72.87 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=34.9
Q ss_pred Cccccce-----eeeeeccc-eeeeeecccCCCceeEeeeeece-eecCCC
Q psy7220 20 TKPAVNQ-----ISFGVGRG-ECFGLLGLNGAGKTTTFKMLTGA-IKPTSG 63 (80)
Q Consensus 20 ~~~vl~~-----isl~i~~g-~~~~iiG~nGsGKsTll~~l~gl-~~~~~G 63 (80)
.++++++ +++.+..+ ++++|+||||+|||||++++++. +.+..|
T Consensus 302 rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G 352 (771)
T TIGR01069 302 RHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG 352 (771)
T ss_pred cCceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC
Confidence 3455543 78888877 89999999999999999999887 445555
No 459
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.23 E-value=2.4e-07 Score=60.86 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=24.9
Q ss_pred ccceeeeeecccCCCceeEeeeeecee
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++.+++|.|++|||||||.+.|++.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999877
No 460
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.22 E-value=1.6e-07 Score=61.45 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=34.6
Q ss_pred ccceeeeeecccCCCceeEeeeeeceeecC-CCceeeeecccc
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIR 73 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~~-~G~i~~~~~~i~ 73 (80)
+++.+++|+|++||||||+.+.|.+.+.+. .|.+.+++.++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 688999999999999999999999876543 457888876543
No 461
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.22 E-value=1.8e-07 Score=64.81 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=34.7
Q ss_pred ceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220 25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67 (80)
Q Consensus 25 ~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~ 67 (80)
+.+...+. +++++++|+||+|||||++.|.|...+..|++..
T Consensus 153 ~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~ 194 (287)
T cd01854 153 DELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISE 194 (287)
T ss_pred HHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence 34444454 4889999999999999999999999888888864
No 462
>KOG0066|consensus
Probab=98.21 E-value=3.9e-07 Score=67.81 Aligned_cols=67 Identities=21% Similarity=0.285 Sum_probs=55.3
Q ss_pred hhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeec--eeecCCCceeeeeccc
Q psy7220 6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSI 72 (80)
Q Consensus 6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g--l~~~~~G~i~~~~~~i 72 (80)
-.++.+.+.+.+..++.++.+.|+.|-.|..+|++||||-|||||++.|+. +-.|..=++.++.+.+
T Consensus 262 a~DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEv 330 (807)
T KOG0066|consen 262 AMDIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEV 330 (807)
T ss_pred cccceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeee
Confidence 457778888888888999999999999999999999999999999998863 2234556777777664
No 463
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.19 E-value=2.6e-07 Score=56.30 Aligned_cols=21 Identities=38% Similarity=0.714 Sum_probs=19.5
Q ss_pred eeeecccCCCceeEeeeeece
Q psy7220 37 FGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 37 ~~iiG~nGsGKsTll~~l~gl 57 (80)
++|+|++|||||||++.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 579999999999999999886
No 464
>PRK00098 GTPase RsgA; Reviewed
Probab=98.18 E-value=3.2e-07 Score=63.84 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=31.8
Q ss_pred cceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~ 67 (80)
+|.+++++|+||+|||||++.|.+...+..|++..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence 58899999999999999999999998888888875
No 465
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.17 E-value=3.5e-07 Score=61.40 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=34.3
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
...+-++++|+.++++++.|.|||++||||+++.++..
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 45788999999999999999999999999999988754
No 466
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.12 E-value=4.5e-07 Score=64.83 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=25.6
Q ss_pred ccceeeeeecccCCCceeEeeeeeceee
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
+++..+.|+||+||||||++++|.+.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999998874
No 467
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.11 E-value=3.6e-07 Score=63.51 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=35.8
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~ 60 (80)
..+++++++...++.+++|+|++|||||||+..+......
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999988876543
No 468
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.11 E-value=2.2e-07 Score=59.36 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=28.7
Q ss_pred ceeeeeecccCCCceeEeeeee---ceeecCCCceee
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAYV 67 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~---gl~~~~~G~i~~ 67 (80)
-.+++|+|++||||||+++.|+ |+..++.|++..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~ 39 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLR 39 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHH
Confidence 4588999999999999999998 877777776654
No 469
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.11 E-value=5.9e-07 Score=57.39 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=0.0
Q ss_pred eeeecccCCCceeEeeeeecee
Q psy7220 37 FGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 37 ~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.+|+|+|||||||++++|..+.
T Consensus 2 ~viiG~N~sGKS~il~ai~~~~ 23 (303)
T PF13304_consen 2 NVIIGPNGSGKSNILEAIYFLF 23 (303)
T ss_dssp ----------------------
T ss_pred Cccccccccccccccccccccc
Confidence 5789999999999999998764
No 470
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=4e-07 Score=66.41 Aligned_cols=27 Identities=37% Similarity=0.634 Sum_probs=24.6
Q ss_pred eccceeeeeecccCCCceeEeeeeece
Q psy7220 31 VGRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 31 i~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
+++|++++++||||+||||+++.|++.
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999988875
No 471
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.09 E-value=4.9e-07 Score=59.07 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=27.4
Q ss_pred eeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~ 68 (80)
.++|+|++|+|||||+++|.|...++.|.+..+
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~ 35 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTG 35 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccC
Confidence 378999999999999999999877766665544
No 472
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.08 E-value=5.7e-07 Score=60.56 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=32.7
Q ss_pred eeccceeeeeecccCCCceeE-eeeeeceeecCCCceeeee
Q psy7220 30 GVGRGECFGLLGLNGAGKTTT-FKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTl-l~~l~gl~~~~~G~i~~~~ 69 (80)
.+++|+++.|.|++||||||| ++++.++.++....+++..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 379999999999999999999 6888887666555566653
No 473
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.08 E-value=7.1e-07 Score=58.59 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=21.1
Q ss_pred eeeeecccCCCceeEe-eeeeceeec
Q psy7220 36 CFGLLGLNGAGKTTTF-KMLTGAIKP 60 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll-~~l~gl~~~ 60 (80)
.++|+|++|||||||+ +++.|..++
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~ 36 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEK 36 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 4789999999999999 688887653
No 474
>KOG0065|consensus
Probab=98.08 E-value=1e-06 Score=71.07 Aligned_cols=54 Identities=31% Similarity=0.428 Sum_probs=47.3
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec---CCCceeeeeccccc
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP---TSGNAYVMNHSIRD 74 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~---~~G~i~~~~~~i~~ 74 (80)
..++++++.-+++|+.+.++||.|||||||+++|+|-.+- ..|+|.++|++..+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e 184 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKE 184 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccc
Confidence 3699999999999999999999999999999999997653 25699999987654
No 475
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=98.07 E-value=7.4e-07 Score=65.38 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=34.0
Q ss_pred eeeeeeccceeeeeecccCCCceeEeeeeeceeecCC
Q psy7220 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 62 (80)
Q Consensus 26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~ 62 (80)
|.-+.+.+|++++|+|+||+|||||+++|++...++.
T Consensus 150 D~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d~ 186 (442)
T PRK08927 150 NTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADV 186 (442)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCE
Confidence 6778999999999999999999999999999887764
No 476
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.06 E-value=7.9e-07 Score=65.94 Aligned_cols=51 Identities=31% Similarity=0.558 Sum_probs=37.8
Q ss_pred ccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCce
Q psy7220 14 ETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65 (80)
Q Consensus 14 ~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i 65 (80)
..++|+. ...|..+- ..++|.++||+|+||-||||.+++|+|.+.|.=|+.
T Consensus 80 ~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~ 131 (591)
T COG1245 80 VVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY 131 (591)
T ss_pred ceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC
Confidence 3555643 23333332 347899999999999999999999999999976643
No 477
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.06 E-value=5.8e-07 Score=57.49 Aligned_cols=38 Identities=29% Similarity=0.354 Sum_probs=31.3
Q ss_pred ccceeeeeecccCCCceeEeeeeeceeecCCCcee-eee
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-VMN 69 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~-~~~ 69 (80)
++|++++|+|++||||||+.+.|++.+.+..+.+. +++
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 57899999999999999999999998866555555 444
No 478
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.03 E-value=9e-07 Score=67.10 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=32.7
Q ss_pred hhhhccccccCCCCCccccceeeeeeccce-eeeeecccCCCceeEeeee
Q psy7220 6 LQTVDSHLETFPYDTKPAVNQISFGVGRGE-CFGLLGLNGAGKTTTFKML 54 (80)
Q Consensus 6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~-~~~iiG~nGsGKsTll~~l 54 (80)
|..+++.+....++. +.++|...+++ ++.|.|+||+|||||++++
T Consensus 3 i~~l~l~nf~~~~~~----~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai 48 (650)
T TIGR03185 3 ILQLTLENFGPYRGR----QTFDLSPSSPKPIILIGGLNGAGKTTLLDAI 48 (650)
T ss_pred ccEEEEeceEEEcCC----ceeeeecCCCCeEEEEECCCCCCHHHHHHHH
Confidence 344556665544443 46677777665 8889999999999999876
No 479
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.03 E-value=7.3e-07 Score=67.71 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=30.9
Q ss_pred eeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
-+++|.||||||||||++.|.+++ |..|.|.+++..
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~ 101 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYN 101 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEccee
Confidence 589999999999999999999987 567888887753
No 480
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=6.4e-07 Score=64.52 Aligned_cols=38 Identities=34% Similarity=0.484 Sum_probs=33.1
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
+++++.++.+++|++++|+||||+||||++..|+....
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56777888899999999999999999999998887543
No 481
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=98.01 E-value=8.7e-07 Score=63.15 Aligned_cols=39 Identities=33% Similarity=0.265 Sum_probs=33.0
Q ss_pred eeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~ 68 (80)
-+..+..+.|.|++|||||||+++|.+.+++....+.+.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiE 196 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIE 196 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEEC
Confidence 456778899999999999999999999998877666654
No 482
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.01 E-value=8.8e-07 Score=58.23 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=27.2
Q ss_pred eeeeecccCCCceeEeeeeeceeecC-CCceeeeecc
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHS 71 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~~~~-~G~i~~~~~~ 71 (80)
.+.|.||+||||||+++.|.+.+.+. .+.|...+.+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~ 39 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP 39 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC
Confidence 57899999999999999888777643 4565554433
No 483
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.01 E-value=6.3e-07 Score=65.76 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=31.8
Q ss_pred eeeeeecccCCCceeEeeeeeceeecC---CCceeeeeccc
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSI 72 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl~~~~---~G~i~~~~~~i 72 (80)
-++||.|++|||||||.+.|.+++.+. .+.|.+++..+
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL 253 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL 253 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence 678999999999999999999988765 56777777544
No 484
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.01 E-value=8.1e-07 Score=54.50 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=23.7
Q ss_pred eeeecccCCCceeEeeeee--ceeecCCCc
Q psy7220 37 FGLLGLNGAGKTTTFKMLT--GAIKPTSGN 64 (80)
Q Consensus 37 ~~iiG~nGsGKsTll~~l~--gl~~~~~G~ 64 (80)
++++|++|+|||||++.|. +..++.++.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~ 31 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKT 31 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCC
Confidence 6799999999999999999 666666655
No 485
>PRK15494 era GTPase Era; Provisional
Probab=98.00 E-value=1.2e-06 Score=61.93 Aligned_cols=50 Identities=16% Similarity=0.325 Sum_probs=40.5
Q ss_pred hhccccccCCCC-Cccccceeeeeeccce-------eeeeecccCCCceeEeeeeece
Q psy7220 8 TVDSHLETFPYD-TKPAVNQISFGVGRGE-------CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~-------~~~iiG~nGsGKsTll~~l~gl 57 (80)
+.+..+.++.|. ...+++.++++++.|+ .++|+|..++|||||++.|.|-
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 18 DTEALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred ccccccccccCCCCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 344455555554 3568999999999999 9999999999999999988764
No 486
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.00 E-value=6.5e-07 Score=57.31 Aligned_cols=42 Identities=31% Similarity=0.366 Sum_probs=33.1
Q ss_pred eccceeeeeecccCCCceeEeeeeeceee-cCCCceeeeeccc
Q psy7220 31 VGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAYVMNHSI 72 (80)
Q Consensus 31 i~~g~~~~iiG~nGsGKsTll~~l~gl~~-~~~G~i~~~~~~i 72 (80)
.++|.++.+.|++||||||+.+.|...+. +..+.+.+++..+
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 46788999999999999999999987664 4456677766444
No 487
>PRK09183 transposase/IS protein; Provisional
Probab=97.99 E-value=6.9e-07 Score=61.17 Aligned_cols=44 Identities=27% Similarity=0.297 Sum_probs=34.1
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~ 67 (80)
.|.+++| +++|+.+.|+||+|+|||+|..+|.........++.+
T Consensus 92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~ 135 (259)
T PRK09183 92 SLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRF 135 (259)
T ss_pred HHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4667788 9999999999999999999999996544333235544
No 488
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.99 E-value=1.2e-06 Score=55.80 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=26.2
Q ss_pred ceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220 25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 25 ~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
...++.+.++.+..|+|||||||||+++.+.-..
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4445555566799999999999999999875443
No 489
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.98 E-value=1.3e-06 Score=69.42 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=27.4
Q ss_pred eeeee---eccceeeeeecccCCCceeEeeeeece
Q psy7220 26 QISFG---VGRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 26 ~isl~---i~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
.|+|+ +..+.+++|+|||||||||++.+|+..
T Consensus 19 ~idf~~~~l~~~~l~~I~G~tGaGKStildai~~a 53 (1047)
T PRK10246 19 KIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLA 53 (1047)
T ss_pred eEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 68888 446899999999999999999988743
No 490
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.97 E-value=1.5e-06 Score=67.75 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=22.2
Q ss_pred eeeccceeeeeecccCCCceeEeee---eeceee
Q psy7220 29 FGVGRGECFGLLGLNGAGKTTTFKM---LTGAIK 59 (80)
Q Consensus 29 l~i~~g~~~~iiG~nGsGKsTll~~---l~gl~~ 59 (80)
+.+.+ .+++|+|||||||||++.+ +.|...
T Consensus 19 i~f~~-~~~~i~G~NGsGKS~ll~ai~~~lg~~~ 51 (1179)
T TIGR02168 19 INFDK-GITGIVGPNGCGKSNIVDAIRWVLGEQS 51 (1179)
T ss_pred EEecC-CcEEEECCCCCChhHHHHHHHHHHcCCc
Confidence 34444 4899999999999999955 555443
No 491
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.97 E-value=1.3e-06 Score=51.48 Aligned_cols=35 Identities=34% Similarity=0.578 Sum_probs=27.3
Q ss_pred ceeeeeecccCCCceeEeeeeeceeecCC-Cceeee
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVM 68 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~~~~~-G~i~~~ 68 (80)
+..+.|+||+|+||||+++.++....... +.++++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 56788999999999999999988776544 344443
No 492
>KOG0063|consensus
Probab=97.97 E-value=2.6e-06 Score=63.00 Aligned_cols=58 Identities=36% Similarity=0.608 Sum_probs=45.8
Q ss_pred CCCCC-ccccceeeeeecccee-----eeeecccCCCceeEeeeeeceeecCCC------ceeeeecccc
Q psy7220 16 FPYDT-KPAVNQISFGVGRGEC-----FGLLGLNGAGKTTTFKMLTGAIKPTSG------NAYVMNHSIR 73 (80)
Q Consensus 16 ~~~~~-~~vl~~isl~i~~g~~-----~~iiG~nGsGKsTll~~l~gl~~~~~G------~i~~~~~~i~ 73 (80)
+.|.+ +.-+.++.|.|..|++ +..+|.||.|||||+++++|.++|+.| .|.+.-+.+.
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkis 412 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKIS 412 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccC
Confidence 44544 5677899999988864 778999999999999999999999887 5555555444
No 493
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.96 E-value=1.4e-06 Score=57.49 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=26.8
Q ss_pred eeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
.++|+|++|||||||++.+.+.+++..+ +.+...+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d 37 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITND 37 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCC
Confidence 5789999999999999999988776544 4443333
No 494
>PLN02165 adenylate isopentenyltransferase
Probab=97.96 E-value=1.2e-06 Score=62.41 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=31.9
Q ss_pred ccceeeeeecccCCCceeEeeeeeceee---cCCCce-eeeecccc
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNA-YVMNHSIR 73 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~---~~~G~i-~~~~~~i~ 73 (80)
++|.+++|+||+|||||||...|++.+. .+.+++ .+.|.+|.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIg 86 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKIT 86 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccc
Confidence 5788999999999999999999988754 345555 34555543
No 495
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.96 E-value=9.4e-07 Score=57.17 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=27.0
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCcee
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~ 66 (80)
-++.+.-.++ +++++++|++|+|||||++.|.+-.....|+|.
T Consensus 25 g~~~l~~~l~-~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is 67 (161)
T PF03193_consen 25 GIEELKELLK-GKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS 67 (161)
T ss_dssp THHHHHHHHT-TSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred CHHHHHHHhc-CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence 3333333333 489999999999999999999886544445443
No 496
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.94 E-value=3e-06 Score=66.91 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=27.5
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEe
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTF 51 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll 51 (80)
=|+|||++|+++++++|.|+||||||||.
T Consensus 15 NLKni~v~iP~~~l~v~TGvSGSGKSSLa 43 (943)
T PRK00349 15 NLKNIDLDIPRDKLVVFTGLSGSGKSSLA 43 (943)
T ss_pred cccccccccCCCceEEEecCCCCCchhHH
Confidence 37899999999999999999999999986
No 497
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.94 E-value=2.4e-06 Score=58.50 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=31.4
Q ss_pred eeeeeccceeeeeecccCCCceeEeeeeeceeecCCC
Q psy7220 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63 (80)
Q Consensus 27 isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G 63 (80)
.=+.+.+|+.++|+|++|+|||||++.+........+
T Consensus 9 ~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~f 45 (249)
T cd01128 9 LFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHP 45 (249)
T ss_pred eecccCCCCEEEEECCCCCCHHHHHHHHHhccccccC
Confidence 3357889999999999999999999999987766543
No 498
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.93 E-value=3.2e-06 Score=66.65 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=27.5
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEe
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTF 51 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll 51 (80)
=|+|||++||++++++|.|+||||||||.
T Consensus 11 NLKni~v~iP~~~l~v~TGvSGSGKSSLa 39 (924)
T TIGR00630 11 NLKNIDVEIPRDKLVVITGLSGSGKSSLA 39 (924)
T ss_pred cccccccccCCCceEEEecCCCCCchhHH
Confidence 37899999999999999999999999986
No 499
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=97.93 E-value=1.6e-06 Score=62.53 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=39.0
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-CCCceeeeeccc
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSI 72 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-~~G~i~~~~~~i 72 (80)
.-+-+.++++.+++.+.|+||||+||||+|.++.-.+.+ .+|.+++....+
T Consensus 12 r~f~~lditf~e~~ttIivgpNGsGKTtvLdair~aL~~fid~~i~~~~ksl 63 (440)
T COG3950 12 RCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFIDFFIYLRFKSL 63 (440)
T ss_pred hhhhhceeecCCCceEEEECCCCCChhhHHHHHHHHHHhhccceeecccchh
Confidence 345678888999999999999999999999888655443 345666655443
No 500
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.93 E-value=4.4e-07 Score=61.05 Aligned_cols=40 Identities=30% Similarity=0.437 Sum_probs=33.4
Q ss_pred ccccceeeeeeccce-eeeeecccCCCceeEeeeeeceeec
Q psy7220 21 KPAVNQISFGVGRGE-CFGLLGLNGAGKTTTFKMLTGAIKP 60 (80)
Q Consensus 21 ~~vl~~isl~i~~g~-~~~iiG~nGsGKsTll~~l~gl~~~ 60 (80)
+.++..++..++++. ++.|+||+|+||||+++.+.....+
T Consensus 29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 468888888887766 8889999999999999998876654
Done!