Query psy7220
Match_columns 80
No_of_seqs 182 out of 2516
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 21:11:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g1u_C Hemin import ATP-bindin 99.9 1.1E-23 3.8E-28 142.8 -0.3 68 7-74 10-77 (266)
2 2pcj_A ABC transporter, lipopr 99.9 2.3E-23 7.8E-28 138.0 -0.9 65 9-73 5-69 (224)
3 1ji0_A ABC transporter; ATP bi 99.8 3.1E-23 1.1E-27 138.5 -1.2 66 8-73 6-71 (240)
4 3gfo_A Cobalt import ATP-bindi 99.8 4.2E-23 1.4E-27 140.8 -0.7 65 8-72 7-72 (275)
5 1g6h_A High-affinity branched- 99.8 3.5E-23 1.2E-27 139.4 -1.3 66 8-73 7-72 (257)
6 1b0u_A Histidine permease; ABC 99.8 5.1E-23 1.7E-27 139.1 -1.0 66 8-73 6-71 (262)
7 1mv5_A LMRA, multidrug resista 99.8 1.4E-22 4.9E-27 135.3 1.1 65 9-73 2-67 (243)
8 2olj_A Amino acid ABC transpor 99.8 6.1E-23 2.1E-27 139.2 -1.0 66 8-73 24-89 (263)
9 2ff7_A Alpha-hemolysin translo 99.8 7.9E-23 2.7E-27 137.2 -0.6 67 7-73 6-74 (247)
10 1vpl_A ABC transporter, ATP-bi 99.8 8.1E-23 2.8E-27 138.0 -1.0 67 7-73 14-80 (256)
11 3tif_A Uncharacterized ABC tra 99.8 7.3E-23 2.5E-27 136.4 -1.7 65 9-73 2-70 (235)
12 2ihy_A ABC transporter, ATP-bi 99.8 1.1E-22 3.8E-27 138.7 -0.8 66 8-73 21-86 (279)
13 1sgw_A Putative ABC transporte 99.8 1.6E-22 5.4E-27 133.7 -0.6 64 8-72 10-73 (214)
14 2ixe_A Antigen peptide transpo 99.8 2.8E-22 9.7E-27 136.1 0.1 66 8-73 16-84 (271)
15 3fvq_A Fe(3+) IONS import ATP- 99.8 1.6E-22 5.6E-27 142.5 -1.2 65 8-72 4-68 (359)
16 3rlf_A Maltose/maltodextrin im 99.8 2.7E-22 9.3E-27 142.3 -0.6 66 9-74 4-69 (381)
17 2d2e_A SUFC protein; ABC-ATPas 99.8 2.3E-22 8E-27 134.9 -1.5 65 9-73 4-70 (250)
18 1z47_A CYSA, putative ABC-tran 99.8 7.2E-22 2.5E-26 139.0 0.2 66 8-73 14-80 (355)
19 2yz2_A Putative ABC transporte 99.8 5E-22 1.7E-26 134.4 -1.0 65 9-73 3-72 (266)
20 2yyz_A Sugar ABC transporter, 99.8 6.2E-22 2.1E-26 139.4 -0.6 65 9-73 4-68 (359)
21 2it1_A 362AA long hypothetical 99.8 8.3E-22 2.9E-26 138.9 -0.1 65 9-73 4-68 (362)
22 2zu0_C Probable ATP-dependent 99.8 5.2E-22 1.8E-26 134.5 -1.2 66 8-73 20-87 (267)
23 2pze_A Cystic fibrosis transme 99.8 1.2E-21 4.2E-26 130.0 0.2 62 8-69 6-69 (229)
24 1g29_1 MALK, maltose transport 99.8 6.9E-22 2.4E-26 139.6 -1.2 66 9-74 4-69 (372)
25 3nh6_A ATP-binding cassette SU 99.8 5.8E-22 2E-26 137.0 -1.8 67 8-74 53-120 (306)
26 2cbz_A Multidrug resistance-as 99.8 1.1E-21 3.8E-26 130.8 -0.5 61 9-69 4-66 (237)
27 1v43_A Sugar-binding transport 99.8 9E-22 3.1E-26 139.1 -1.0 65 9-73 12-76 (372)
28 3tui_C Methionine import ATP-b 99.8 1.2E-21 4.1E-26 138.4 -1.4 66 8-73 24-93 (366)
29 3d31_A Sulfate/molybdate ABC t 99.8 1.1E-21 3.8E-26 137.6 -1.9 64 9-73 2-65 (348)
30 1oxx_K GLCV, glucose, ABC tran 99.8 6E-22 2E-26 139.1 -3.3 66 9-74 4-71 (353)
31 2ghi_A Transport protein; mult 99.8 4.9E-21 1.7E-25 129.2 -0.0 65 8-73 17-84 (260)
32 2onk_A Molybdate/tungstate ABC 99.8 7.1E-21 2.4E-25 127.4 -0.7 62 9-73 2-63 (240)
33 3gd7_A Fusion complex of cysti 99.8 9.7E-21 3.3E-25 134.5 -0.3 66 8-74 19-86 (390)
34 2pjz_A Hypothetical protein ST 99.8 6.2E-21 2.1E-25 129.3 -1.6 63 9-73 2-68 (263)
35 2nq2_C Hypothetical ABC transp 99.8 1.4E-20 4.8E-25 126.7 -0.7 59 9-67 5-64 (253)
36 2qi9_C Vitamin B12 import ATP- 99.8 2.7E-20 9.1E-25 125.3 -0.5 60 9-73 5-64 (249)
37 3b5x_A Lipid A export ATP-bind 99.8 4.9E-20 1.7E-24 135.1 0.3 66 8-73 341-408 (582)
38 4a82_A Cystic fibrosis transme 99.8 6E-20 2E-24 134.7 0.4 67 8-74 339-407 (578)
39 3qf4_B Uncharacterized ABC tra 99.8 7E-20 2.4E-24 134.8 0.7 67 8-74 354-421 (598)
40 3qf4_A ABC transporter, ATP-bi 99.8 7.5E-20 2.6E-24 134.5 0.9 67 8-74 341-409 (587)
41 3b60_A Lipid A export ATP-bind 99.8 5.2E-20 1.8E-24 135.0 -0.3 67 8-74 341-409 (582)
42 2yl4_A ATP-binding cassette SU 99.8 6.8E-20 2.3E-24 134.7 0.0 66 9-74 342-410 (595)
43 2bbs_A Cystic fibrosis transme 99.7 1.3E-19 4.3E-24 124.3 -0.6 60 8-69 40-99 (290)
44 1htw_A HI0065; nucleotide-bind 99.7 2.1E-20 7E-25 118.6 -5.9 64 9-73 8-71 (158)
45 4f4c_A Multidrug resistance pr 99.7 1.4E-18 4.8E-23 136.7 1.4 67 8-74 1076-1145(1321)
46 3g5u_A MCG1178, multidrug resi 99.7 4.3E-18 1.5E-22 133.7 0.3 67 8-74 387-456 (1284)
47 3g5u_A MCG1178, multidrug resi 99.7 6.9E-18 2.4E-22 132.6 -0.1 67 8-74 1030-1099(1284)
48 4f4c_A Multidrug resistance pr 99.6 1.4E-17 4.7E-22 131.1 -0.0 67 8-74 415-484 (1321)
49 2iw3_A Elongation factor 3A; a 99.6 8.1E-18 2.8E-22 130.0 -1.4 61 9-69 672-734 (986)
50 1yqt_A RNAse L inhibitor; ATP- 99.6 4.9E-17 1.7E-21 118.9 -1.8 53 12-65 25-78 (538)
51 3bk7_A ABC transporter ATP-bin 99.6 5E-17 1.7E-21 120.5 -2.0 53 12-65 95-148 (607)
52 3ozx_A RNAse L inhibitor; ATP 99.6 1.8E-16 6.1E-21 116.1 -0.3 62 10-72 271-332 (538)
53 3euj_A Chromosome partition pr 99.6 3E-16 1E-20 114.1 0.1 53 21-74 17-69 (483)
54 3bk7_A ABC transporter ATP-bin 99.5 4.2E-16 1.4E-20 115.5 -0.3 58 9-67 358-415 (607)
55 1z6g_A Guanylate kinase; struc 99.5 3.4E-16 1.2E-20 102.5 -0.8 50 19-72 8-57 (218)
56 1yqt_A RNAse L inhibitor; ATP- 99.5 3.9E-16 1.3E-20 114.1 -0.9 58 9-67 288-345 (538)
57 2dpy_A FLII, flagellum-specifi 99.5 4.8E-16 1.6E-20 111.5 -1.8 62 8-70 131-193 (438)
58 2obl_A ESCN; ATPase, hydrolase 99.5 3.7E-16 1.3E-20 109.3 -2.8 63 8-71 45-108 (347)
59 2v9p_A Replication protein E1; 99.5 1.8E-16 6E-21 109.6 -5.1 57 8-68 101-157 (305)
60 2qm8_A GTPase/ATPase; G protei 99.5 2.8E-16 9.6E-21 109.2 -4.3 67 8-74 29-95 (337)
61 2pt7_A CAG-ALFA; ATPase, prote 99.5 7.9E-16 2.7E-20 106.7 -2.6 50 22-71 159-208 (330)
62 3b85_A Phosphate starvation-in 99.5 4.7E-16 1.6E-20 102.1 -4.7 47 16-67 8-54 (208)
63 2eyu_A Twitching motility prot 99.5 2.1E-15 7.3E-20 101.7 -1.6 50 22-73 15-65 (261)
64 1tq4_A IIGP1, interferon-induc 99.4 1.7E-15 5.6E-20 108.3 -3.4 52 21-72 36-107 (413)
65 1tf7_A KAIC; homohexamer, hexa 99.4 3.1E-15 1.1E-19 108.5 -2.1 63 10-72 14-79 (525)
66 3b9q_A Chloroplast SRP recepto 99.4 4E-15 1.4E-19 102.3 -2.3 52 23-74 89-140 (302)
67 3j16_B RLI1P; ribosome recycli 99.4 5.7E-15 2E-19 109.5 -1.7 52 13-65 82-134 (608)
68 2npi_A Protein CLP1; CLP1-PCF1 99.4 8.3E-16 2.8E-20 110.9 -6.2 55 9-69 119-175 (460)
69 2gza_A Type IV secretion syste 99.4 5E-15 1.7E-19 103.6 -2.5 47 24-70 165-211 (361)
70 3ux8_A Excinuclease ABC, A sub 99.4 2.6E-14 8.8E-19 106.1 0.7 46 20-65 30-96 (670)
71 4gp7_A Metallophosphoesterase; 99.4 1.6E-14 5.5E-19 91.3 -1.3 44 26-69 1-56 (171)
72 2jeo_A Uridine-cytidine kinase 99.4 1.5E-14 5E-19 95.7 -1.9 42 17-58 8-49 (245)
73 1sq5_A Pantothenate kinase; P- 99.4 5.2E-15 1.8E-19 101.3 -4.5 61 9-71 38-122 (308)
74 3j16_B RLI1P; ribosome recycli 99.4 4.5E-14 1.5E-18 104.8 -0.1 53 12-64 350-408 (608)
75 2iw3_A Elongation factor 3A; a 99.4 3.8E-14 1.3E-18 109.7 -1.2 49 8-56 435-483 (986)
76 2og2_A Putative signal recogni 99.4 5.1E-14 1.7E-18 99.1 -0.7 50 25-74 148-197 (359)
77 3ozx_A RNAse L inhibitor; ATP 99.3 7E-14 2.4E-18 102.4 -0.8 51 14-65 5-56 (538)
78 3lnc_A Guanylate kinase, GMP k 99.3 1.8E-13 6.3E-18 89.4 0.1 38 21-58 14-52 (231)
79 2yhs_A FTSY, cell division pro 99.3 1.5E-13 5.2E-18 100.3 -0.7 50 24-73 283-332 (503)
80 1p9r_A General secretion pathw 99.3 9.9E-14 3.4E-18 99.1 -2.4 62 9-72 144-205 (418)
81 1qhl_A Protein (cell division 99.3 1.4E-14 4.9E-19 96.4 -6.5 59 6-72 7-65 (227)
82 1znw_A Guanylate kinase, GMP k 99.3 1.8E-13 6.3E-18 88.4 -1.5 37 21-59 9-45 (207)
83 1pui_A ENGB, probable GTP-bind 99.3 3.4E-13 1.2E-17 85.9 -0.6 56 9-67 4-64 (210)
84 2qag_B Septin-6, protein NEDD5 99.3 2.5E-13 8.5E-18 97.6 -1.7 51 6-58 14-66 (427)
85 3ux8_A Excinuclease ABC, A sub 99.2 1.2E-12 4.3E-17 97.1 1.0 34 21-54 335-368 (670)
86 3aez_A Pantothenate kinase; tr 99.2 7.9E-14 2.7E-18 96.2 -5.3 33 31-63 87-119 (312)
87 1cr0_A DNA primase/helicase; R 99.2 6.9E-13 2.4E-17 89.4 -1.6 52 20-71 21-73 (296)
88 2oap_1 GSPE-2, type II secreti 99.2 5.5E-13 1.9E-17 97.2 -2.5 51 21-71 247-297 (511)
89 2ehv_A Hypothetical protein PH 99.2 1.4E-12 5E-17 84.7 -0.3 42 30-71 26-69 (251)
90 1zp6_A Hypothetical protein AT 99.2 1.6E-12 5.6E-17 82.0 -0.4 41 30-72 5-45 (191)
91 3tr0_A Guanylate kinase, GMP k 99.2 1.7E-12 5.8E-17 82.6 -0.7 32 28-59 1-32 (205)
92 1rj9_A FTSY, signal recognitio 99.2 1.9E-12 6.4E-17 89.1 -0.5 42 33-74 101-142 (304)
93 4aby_A DNA repair protein RECN 99.2 6.2E-13 2.1E-17 92.9 -3.0 38 20-58 47-84 (415)
94 2qnr_A Septin-2, protein NEDD5 99.2 1.3E-12 4.3E-17 89.4 -1.4 53 12-71 2-55 (301)
95 3sop_A Neuronal-specific septi 99.2 1.3E-12 4.3E-17 88.5 -1.9 38 36-73 4-41 (270)
96 1s96_A Guanylate kinase, GMP k 99.2 1.6E-12 5.6E-17 85.6 -1.5 45 28-72 10-56 (219)
97 1u0l_A Probable GTPase ENGC; p 99.1 1.5E-12 5.1E-17 88.9 -1.9 45 29-73 164-211 (301)
98 3e70_C DPA, signal recognition 99.1 3.4E-12 1.2E-16 88.7 -0.7 45 30-74 125-169 (328)
99 1lw7_A Transcriptional regulat 99.1 8.2E-13 2.8E-17 91.9 -4.2 46 23-68 157-208 (365)
100 3uie_A Adenylyl-sulfate kinase 99.1 9.2E-13 3.2E-17 84.5 -3.7 60 13-73 4-65 (200)
101 4a74_A DNA repair and recombin 99.1 3.8E-12 1.3E-16 81.9 -0.8 42 30-71 21-69 (231)
102 2i3b_A HCR-ntpase, human cance 99.1 2.8E-12 9.5E-17 83.0 -2.0 37 34-72 1-37 (189)
103 3c8u_A Fructokinase; YP_612366 99.1 3.4E-12 1.2E-16 82.4 -2.0 42 31-72 19-63 (208)
104 3szr_A Interferon-induced GTP- 99.1 1.6E-12 5.6E-17 96.1 -4.1 62 8-72 10-84 (608)
105 2vf7_A UVRA2, excinuclease ABC 99.1 9.8E-12 3.4E-16 95.1 -0.4 36 23-58 512-548 (842)
106 2ewv_A Twitching motility prot 99.1 4.3E-12 1.5E-16 89.2 -2.5 48 23-72 127-175 (372)
107 2qag_C Septin-7; cell cycle, c 99.1 1.6E-11 5.3E-16 87.8 0.4 50 8-63 11-60 (418)
108 3nwj_A ATSK2; P loop, shikimat 99.1 2.3E-12 7.9E-17 86.6 -3.8 50 8-57 17-71 (250)
109 1lvg_A Guanylate kinase, GMP k 99.0 1E-11 3.4E-16 80.1 -1.6 28 32-59 2-29 (198)
110 1t9h_A YLOQ, probable GTPase E 99.0 4.4E-12 1.5E-16 87.6 -3.5 45 29-73 168-215 (307)
111 3kta_A Chromosome segregation 99.0 1.7E-11 5.9E-16 77.0 -0.7 39 25-64 18-56 (182)
112 1in4_A RUVB, holliday junction 99.0 1.9E-12 6.6E-17 89.1 -5.7 66 7-72 17-93 (334)
113 2yv5_A YJEQ protein; hydrolase 99.0 1.4E-11 4.8E-16 84.2 -1.7 43 30-73 161-206 (302)
114 3a00_A Guanylate kinase, GMP k 99.0 2E-11 7E-16 77.5 -1.1 26 34-59 1-26 (186)
115 2w0m_A SSO2452; RECA, SSPF, un 99.0 1.2E-11 4E-16 79.3 -2.3 51 21-71 9-60 (235)
116 2o8b_B DNA mismatch repair pro 99.0 3.1E-11 1.1E-15 93.8 -0.9 51 9-60 751-814 (1022)
117 1ewq_A DNA mismatch repair pro 99.0 5.4E-11 1.8E-15 90.3 -0.4 45 19-66 564-609 (765)
118 4e22_A Cytidylate kinase; P-lo 98.9 1.9E-11 6.4E-16 81.4 -3.7 41 32-72 25-76 (252)
119 2x8a_A Nuclear valosin-contain 98.9 2.1E-11 7.2E-16 82.3 -3.7 54 16-73 28-81 (274)
120 1ls1_A Signal recognition part 98.9 6.3E-11 2.2E-15 80.9 -1.7 62 9-74 77-138 (295)
121 4eun_A Thermoresistant glucoki 98.9 1.1E-10 3.7E-15 74.8 -0.6 48 22-73 17-64 (200)
122 3jvv_A Twitching mobility prot 98.9 6E-11 2E-15 83.2 -2.4 42 30-71 119-161 (356)
123 3thx_A DNA mismatch repair pro 98.9 1.8E-10 6E-15 89.0 -0.3 35 20-54 648-682 (934)
124 2bdt_A BH3686; alpha-beta prot 98.9 1E-10 3.4E-15 74.0 -1.4 37 34-73 2-38 (189)
125 3tqc_A Pantothenate kinase; bi 98.9 1.5E-11 5.1E-16 85.4 -5.8 59 12-70 64-130 (321)
126 2j41_A Guanylate kinase; GMP, 98.9 8.5E-11 2.9E-15 74.6 -1.8 35 29-63 1-35 (207)
127 2vp4_A Deoxynucleoside kinase; 98.9 2.6E-10 8.8E-15 74.7 0.4 44 26-73 12-55 (230)
128 1nij_A Hypothetical protein YJ 98.9 2.4E-10 8.2E-15 78.4 -0.0 41 34-74 4-52 (318)
129 3thx_B DNA mismatch repair pro 98.9 1.2E-10 3.9E-15 89.9 -1.8 38 20-57 659-696 (918)
130 3asz_A Uridine kinase; cytidin 98.9 1.1E-10 3.6E-15 74.9 -1.7 30 31-60 3-32 (211)
131 1ixz_A ATP-dependent metallopr 98.9 1.5E-11 5.2E-16 81.0 -5.8 57 12-72 29-85 (254)
132 1wb9_A DNA mismatch repair pro 98.9 2.2E-10 7.4E-15 87.3 -0.3 39 19-58 593-631 (800)
133 2bbw_A Adenylate kinase 4, AK4 98.9 3.1E-11 1.1E-15 79.5 -4.5 38 33-70 26-66 (246)
134 2rcn_A Probable GTPase ENGC; Y 98.9 1.9E-10 6.4E-15 81.0 -0.8 46 22-68 204-250 (358)
135 1iy2_A ATP-dependent metallopr 98.9 1.8E-11 6E-16 81.9 -5.8 56 13-72 54-109 (278)
136 2r6f_A Excinuclease ABC subuni 98.8 3.5E-10 1.2E-14 87.6 0.4 34 22-55 638-671 (972)
137 3pih_A Uvrabc system protein A 98.8 3.8E-10 1.3E-14 87.1 0.3 31 21-51 597-627 (916)
138 2f1r_A Molybdopterin-guanine d 98.8 3.5E-11 1.2E-15 76.8 -4.7 38 35-72 3-43 (171)
139 2p67_A LAO/AO transport system 98.8 5.4E-11 1.8E-15 82.4 -4.6 64 8-71 30-93 (341)
140 3vaa_A Shikimate kinase, SK; s 98.8 2.7E-10 9.3E-15 72.9 -1.3 40 19-58 10-49 (199)
141 1zu4_A FTSY; GTPase, signal re 98.8 3.9E-10 1.3E-14 78.0 -0.7 49 25-73 96-144 (320)
142 1kgd_A CASK, peripheral plasma 98.8 2.9E-10 9.9E-15 71.9 -1.3 35 33-67 4-39 (180)
143 1rz3_A Hypothetical protein rb 98.8 4.4E-10 1.5E-14 72.2 -0.6 43 30-72 18-60 (201)
144 1pzn_A RAD51, DNA repair and r 98.8 2.5E-10 8.4E-15 79.5 -2.0 51 22-72 118-176 (349)
145 3ec2_A DNA replication protein 98.8 1.9E-10 6.6E-15 72.2 -2.3 36 28-63 32-67 (180)
146 1w1w_A Structural maintenance 98.8 4.4E-10 1.5E-14 79.5 -1.0 52 5-62 3-54 (430)
147 2o5v_A DNA replication and rep 98.8 9.2E-10 3.1E-14 77.3 0.5 34 22-56 15-48 (359)
148 1ye8_A Protein THEP1, hypothet 98.8 3.2E-10 1.1E-14 72.5 -1.8 31 36-71 2-32 (178)
149 1n0w_A DNA repair protein RAD5 98.7 7.5E-10 2.6E-14 71.6 -0.6 42 30-71 20-68 (243)
150 2kjq_A DNAA-related protein; s 98.7 8.3E-10 2.8E-14 68.6 -0.5 39 33-72 35-75 (149)
151 2ygr_A Uvrabc system protein A 98.7 1.2E-09 4.1E-14 84.9 0.1 34 22-55 656-689 (993)
152 1udx_A The GTP-binding protein 98.7 7.4E-10 2.5E-14 79.1 -1.3 35 24-58 147-181 (416)
153 1e69_A Chromosome segregation 98.7 1.3E-09 4.5E-14 74.7 -0.1 31 26-57 17-47 (322)
154 1vma_A Cell division protein F 98.7 1.1E-09 3.6E-14 75.5 -0.7 48 26-73 96-143 (306)
155 3cr8_A Sulfate adenylyltranfer 98.7 8.1E-10 2.8E-14 81.3 -2.8 43 30-72 365-409 (552)
156 1knq_A Gluconate kinase; ALFA/ 98.6 2.5E-09 8.5E-14 66.6 -0.5 37 32-72 6-42 (175)
157 3k1j_A LON protease, ATP-depen 98.6 7.5E-10 2.6E-14 81.5 -3.7 57 16-72 42-99 (604)
158 1tf7_A KAIC; homohexamer, hexa 98.6 1.9E-09 6.6E-14 78.1 -1.7 43 28-71 275-319 (525)
159 1svm_A Large T antigen; AAA+ f 98.6 1E-09 3.5E-14 77.5 -3.2 44 21-67 156-199 (377)
160 3tau_A Guanylate kinase, GMP k 98.6 2.5E-09 8.6E-14 69.0 -1.3 29 32-60 6-34 (208)
161 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 3.7E-09 1.3E-13 75.1 -1.2 41 30-70 16-68 (392)
162 1oix_A RAS-related protein RAB 98.6 2.5E-09 8.4E-14 67.7 -2.2 38 35-72 30-78 (191)
163 3ney_A 55 kDa erythrocyte memb 98.6 4.2E-09 1.4E-13 68.8 -1.3 31 29-59 14-44 (197)
164 3qf7_A RAD50; ABC-ATPase, ATPa 98.5 7.6E-09 2.6E-13 72.3 -0.4 35 22-57 12-46 (365)
165 2cvh_A DNA repair and recombin 98.5 3.9E-09 1.3E-13 67.3 -2.4 47 22-70 7-54 (220)
166 2ffh_A Protein (FFH); SRP54, s 98.5 1E-08 3.5E-13 73.5 -1.2 58 13-74 81-138 (425)
167 2px0_A Flagellar biosynthesis 98.5 1.3E-08 4.5E-13 69.5 -0.8 41 32-72 103-144 (296)
168 1j8m_F SRP54, signal recogniti 98.5 1.1E-08 3.7E-13 70.0 -1.3 58 13-73 79-137 (297)
169 3lda_A DNA repair protein RAD5 98.4 2.1E-08 7.2E-13 71.3 -0.5 42 30-71 174-222 (400)
170 2www_A Methylmalonic aciduria 98.4 2.7E-08 9.2E-13 69.2 -0.6 42 32-73 72-113 (349)
171 2f9l_A RAB11B, member RAS onco 98.4 1.2E-08 4.1E-13 64.5 -2.3 37 36-72 7-54 (199)
172 1cke_A CK, MSSA, protein (cyti 98.4 4.6E-09 1.6E-13 67.6 -4.4 34 34-67 5-41 (227)
173 2pez_A Bifunctional 3'-phospho 98.4 1.5E-08 5E-13 63.5 -2.0 40 32-72 3-44 (179)
174 3t34_A Dynamin-related protein 98.4 5E-08 1.7E-12 67.5 0.5 43 21-66 24-68 (360)
175 4ad8_A DNA repair protein RECN 98.4 1.8E-08 6.2E-13 72.9 -2.0 35 22-57 49-83 (517)
176 1nlf_A Regulatory protein REPA 98.4 3E-08 1E-12 66.3 -1.0 30 30-59 26-55 (279)
177 3m6a_A ATP-dependent protease 98.4 2.3E-09 8E-14 78.3 -6.9 49 20-69 95-143 (543)
178 1kag_A SKI, shikimate kinase I 98.4 1.9E-08 6.5E-13 62.3 -2.0 27 33-59 3-29 (173)
179 2dhr_A FTSH; AAA+ protein, hex 98.3 1.3E-08 4.6E-13 74.1 -3.5 51 18-72 50-100 (499)
180 1sxj_C Activator 1 40 kDa subu 98.3 8E-09 2.7E-13 70.7 -4.5 55 12-66 22-78 (340)
181 4eaq_A DTMP kinase, thymidylat 98.3 6.4E-08 2.2E-12 63.7 -0.4 46 22-68 11-59 (229)
182 2qt1_A Nicotinamide riboside k 98.3 4.5E-08 1.5E-12 62.5 -1.2 30 29-58 16-45 (207)
183 1f2t_A RAD50 ABC-ATPase; DNA d 98.3 6.9E-08 2.4E-12 59.9 -0.5 28 27-55 17-44 (149)
184 1sxj_E Activator 1 40 kDa subu 98.3 5.6E-08 1.9E-12 66.1 -1.4 36 36-71 38-74 (354)
185 1m7g_A Adenylylsulfate kinase; 98.3 1.9E-08 6.4E-13 64.7 -3.7 43 29-71 20-64 (211)
186 2dr3_A UPF0273 protein PH0284; 98.3 4.8E-08 1.6E-12 63.0 -1.8 48 22-69 10-59 (247)
187 3ice_A Transcription terminati 98.2 7.1E-08 2.4E-12 69.2 -2.4 52 8-59 133-199 (422)
188 2qag_A Septin-2, protein NEDD5 98.1 6.3E-08 2.2E-12 67.6 -3.7 46 9-60 18-63 (361)
189 2yvu_A Probable adenylyl-sulfa 98.1 2.1E-07 7.3E-12 58.4 -1.1 38 29-66 8-45 (186)
190 3qkt_A DNA double-strand break 98.0 5.1E-07 1.7E-11 62.2 -0.4 29 26-55 16-44 (339)
191 3qks_A DNA double-strand break 98.0 5.6E-07 1.9E-11 58.1 -0.3 28 27-55 17-44 (203)
192 1odf_A YGR205W, hypothetical 3 98.0 2.6E-07 8.8E-12 63.0 -2.1 30 31-60 28-57 (290)
193 1y63_A LMAJ004144AAA protein; 98.0 4.1E-07 1.4E-11 57.4 -1.1 32 26-57 2-33 (184)
194 1jjv_A Dephospho-COA kinase; P 98.0 3.9E-07 1.3E-11 58.0 -1.3 21 36-56 4-24 (206)
195 1f6b_A SAR1; gtpases, N-termin 98.0 2.2E-07 7.6E-12 58.9 -2.5 35 21-56 13-47 (198)
196 3hr8_A Protein RECA; alpha and 98.0 5.4E-07 1.9E-11 63.3 -1.1 41 30-70 57-98 (356)
197 1m2o_B GTP-binding protein SAR 98.0 3.5E-07 1.2E-11 57.5 -2.2 34 22-56 12-45 (190)
198 3pih_A Uvrabc system protein A 98.0 1.6E-06 5.4E-11 67.1 1.0 29 23-51 13-41 (916)
199 1mky_A Probable GTP-binding pr 98.0 5.2E-07 1.8E-11 64.0 -1.6 36 36-71 182-229 (439)
200 2if2_A Dephospho-COA kinase; a 97.9 5.5E-07 1.9E-11 57.1 -1.6 21 36-56 3-23 (204)
201 3auy_A DNA double-strand break 97.9 1.1E-06 3.8E-11 61.2 -0.3 44 4-55 3-46 (371)
202 2qor_A Guanylate kinase; phosp 97.9 7.5E-07 2.5E-11 56.9 -1.3 29 30-58 8-36 (204)
203 2qtf_A Protein HFLX, GTP-bindi 97.9 7.3E-07 2.5E-11 62.5 -1.6 39 33-71 177-227 (364)
204 2vf7_A UVRA2, excinuclease ABC 97.9 2.2E-06 7.5E-11 65.9 0.9 30 22-51 24-53 (842)
205 2dy1_A Elongation factor G; tr 97.9 8.1E-07 2.8E-11 66.3 -1.5 38 28-65 3-42 (665)
206 2ohf_A Protein OLA1, GTP-bindi 97.9 7E-07 2.4E-11 63.6 -1.8 40 30-69 18-68 (396)
207 2gj8_A MNME, tRNA modification 97.9 9.7E-07 3.3E-11 54.7 -1.1 27 32-58 2-28 (172)
208 3t61_A Gluconokinase; PSI-biol 97.9 1.1E-06 3.8E-11 55.7 -1.2 25 34-58 18-42 (202)
209 2ga8_A Hypothetical 39.9 kDa p 97.8 3.4E-07 1.2E-11 64.6 -4.0 38 22-59 10-49 (359)
210 1ega_A Protein (GTP-binding pr 97.8 1.3E-06 4.5E-11 59.3 -1.1 27 32-58 6-32 (301)
211 4fcw_A Chaperone protein CLPB; 97.8 4.5E-07 1.5E-11 60.5 -3.7 50 17-66 19-79 (311)
212 2ygr_A Uvrabc system protein A 97.8 3.7E-06 1.3E-10 65.6 0.9 30 22-51 34-63 (993)
213 2r6f_A Excinuclease ABC subuni 97.8 3.9E-06 1.3E-10 65.3 0.9 30 22-51 32-61 (972)
214 2ius_A DNA translocase FTSK; n 97.8 3.1E-06 1.1E-10 61.9 0.2 47 25-71 158-206 (512)
215 2wjg_A FEOB, ferrous iron tran 97.8 1.2E-06 4.1E-11 54.2 -2.0 23 35-57 8-30 (188)
216 2p5t_B PEZT; postsegregational 97.8 2.1E-06 7E-11 56.8 -1.1 40 30-71 28-67 (253)
217 3cm0_A Adenylate kinase; ATP-b 97.8 2.1E-06 7.2E-11 53.5 -1.1 24 32-55 2-25 (186)
218 2zej_A Dardarin, leucine-rich 97.7 2.3E-06 8E-11 53.3 -1.2 23 36-58 4-26 (184)
219 2r6a_A DNAB helicase, replicat 97.7 1.3E-06 4.5E-11 62.2 -2.7 50 22-71 191-241 (454)
220 2wji_A Ferrous iron transport 97.7 2.8E-06 9.5E-11 52.0 -1.3 24 35-58 4-27 (165)
221 1lv7_A FTSH; alpha/beta domain 97.7 3E-06 1E-10 55.5 -1.2 35 23-59 36-70 (257)
222 2zr9_A Protein RECA, recombina 97.7 4.2E-06 1.4E-10 58.3 -0.8 38 30-67 57-94 (349)
223 3kl4_A SRP54, signal recogniti 97.7 4.6E-06 1.6E-10 59.9 -0.8 40 33-72 96-135 (433)
224 4ag6_A VIRB4 ATPase, type IV s 97.7 4.5E-06 1.5E-10 58.1 -0.8 37 33-69 34-70 (392)
225 1q3t_A Cytidylate kinase; nucl 97.7 3.5E-06 1.2E-10 54.9 -1.3 27 30-56 12-38 (236)
226 1ypw_A Transitional endoplasmi 97.6 3.1E-06 1.1E-10 64.4 -1.8 31 29-59 233-263 (806)
227 3kb2_A SPBC2 prophage-derived 97.6 5.2E-06 1.8E-10 50.7 -1.3 22 36-57 3-24 (173)
228 3r20_A Cytidylate kinase; stru 97.6 2.4E-06 8.1E-11 56.9 -3.1 32 34-65 9-43 (233)
229 1np6_A Molybdopterin-guanine d 97.6 4.6E-06 1.6E-10 53.1 -1.8 26 35-60 7-32 (174)
230 3lw7_A Adenylate kinase relate 97.5 7.6E-06 2.6E-10 49.6 -1.1 19 36-54 3-21 (179)
231 3lxx_A GTPase IMAP family memb 97.5 8.6E-06 3E-10 52.9 -1.0 28 36-63 31-58 (239)
232 2rhm_A Putative kinase; P-loop 97.5 9E-06 3.1E-10 50.6 -1.0 25 32-56 3-27 (193)
233 1uf9_A TT1252 protein; P-loop, 97.5 1.2E-05 4E-10 50.5 -0.5 24 34-57 8-31 (203)
234 1kht_A Adenylate kinase; phosp 97.5 8.5E-06 2.9E-10 50.5 -1.2 24 34-57 3-26 (192)
235 1qhx_A CPT, protein (chloramph 97.5 8.6E-06 3E-10 50.3 -1.3 24 34-57 3-26 (178)
236 1gtv_A TMK, thymidylate kinase 97.4 2.3E-06 7.9E-11 54.3 -4.3 24 36-59 2-25 (214)
237 3iij_A Coilin-interacting nucl 97.4 9.1E-06 3.1E-10 50.5 -1.6 25 31-55 8-32 (180)
238 2jaq_A Deoxyguanosine kinase; 97.4 1.1E-05 3.6E-10 50.6 -1.3 21 36-56 2-22 (205)
239 1vht_A Dephospho-COA kinase; s 97.4 1.3E-05 4.6E-10 51.2 -1.0 24 33-56 3-26 (218)
240 2ze6_A Isopentenyl transferase 97.4 1.1E-05 3.9E-10 53.4 -1.4 22 36-57 3-24 (253)
241 2ce7_A Cell division protein F 97.4 2.7E-06 9.1E-11 61.7 -5.1 37 20-58 37-73 (476)
242 3k53_A Ferrous iron transport 97.3 1.6E-05 5.4E-10 52.8 -1.3 24 36-59 5-28 (271)
243 1via_A Shikimate kinase; struc 97.3 1.3E-05 4.6E-10 49.6 -1.5 22 36-57 6-27 (175)
244 1gvn_B Zeta; postsegregational 97.3 2.1E-05 7.3E-10 53.1 -0.6 26 31-56 30-55 (287)
245 2v54_A DTMP kinase, thymidylat 97.3 1.7E-05 6E-10 49.8 -1.1 26 33-58 3-28 (204)
246 1ly1_A Polynucleotide kinase; 97.3 1.6E-05 5.5E-10 48.8 -1.4 22 35-56 3-24 (181)
247 1jal_A YCHF protein; nucleotid 97.3 2.3E-05 7.8E-10 55.2 -0.7 35 35-69 3-48 (363)
248 1ex7_A Guanylate kinase; subst 97.3 1.7E-05 5.9E-10 51.0 -1.3 20 37-56 4-23 (186)
249 2plr_A DTMP kinase, probable t 97.3 1.9E-05 6.7E-10 49.6 -1.1 27 33-59 3-29 (213)
250 3trf_A Shikimate kinase, SK; a 97.3 1.8E-05 6E-10 49.2 -1.3 24 34-57 5-28 (185)
251 3cf0_A Transitional endoplasmi 97.3 1.4E-05 4.9E-10 53.9 -1.8 30 29-58 44-73 (301)
252 2c95_A Adenylate kinase 1; tra 97.3 1.9E-05 6.7E-10 49.2 -1.2 25 32-56 7-31 (196)
253 2wwf_A Thymidilate kinase, put 97.3 2.1E-05 7.2E-10 49.7 -1.1 26 32-57 8-33 (212)
254 1tev_A UMP-CMP kinase; ploop, 97.3 2.1E-05 7.1E-10 48.8 -1.1 23 34-56 3-25 (196)
255 2bwj_A Adenylate kinase 5; pho 97.3 8.9E-06 3E-10 50.9 -3.0 28 30-57 8-35 (199)
256 1nn5_A Similar to deoxythymidy 97.3 2.3E-05 7.9E-10 49.5 -1.2 26 32-57 7-32 (215)
257 1nks_A Adenylate kinase; therm 97.2 2.3E-05 7.9E-10 48.5 -1.3 23 36-58 3-25 (194)
258 2vli_A Antibiotic resistance p 97.2 2.6E-05 9E-10 48.2 -1.1 24 33-56 4-27 (183)
259 2z0h_A DTMP kinase, thymidylat 97.2 2.9E-05 9.8E-10 48.4 -1.4 23 36-58 2-24 (197)
260 3llm_A ATP-dependent RNA helic 97.2 2.6E-05 8.8E-10 50.7 -1.7 25 30-54 72-96 (235)
261 3ake_A Cytidylate kinase; CMP 97.2 2.9E-05 9.9E-10 48.8 -1.5 22 36-57 4-25 (208)
262 2qby_A CDC6 homolog 1, cell di 97.2 2.6E-05 8.9E-10 52.7 -1.9 29 32-60 43-71 (386)
263 1a7j_A Phosphoribulokinase; tr 97.1 4.5E-05 1.5E-09 51.7 -0.8 25 33-57 4-28 (290)
264 1ypw_A Transitional endoplasmi 97.1 3.3E-05 1.1E-09 58.8 -1.8 42 28-71 505-546 (806)
265 3q72_A GTP-binding protein RAD 97.1 4.2E-05 1.4E-09 46.0 -1.1 23 36-58 4-26 (166)
266 3ihw_A Centg3; RAS, centaurin, 97.1 4.1E-05 1.4E-09 47.7 -1.2 20 36-55 22-41 (184)
267 1xjc_A MOBB protein homolog; s 97.1 3.6E-05 1.2E-09 49.0 -1.5 25 36-60 6-30 (169)
268 2ged_A SR-beta, signal recogni 97.1 3.6E-05 1.2E-09 47.6 -1.5 24 35-58 49-72 (193)
269 2fu5_C RAS-related protein RAB 97.1 0.00015 5.1E-09 44.4 1.3 22 36-57 10-31 (183)
270 1aky_A Adenylate kinase; ATP:A 97.1 4.4E-05 1.5E-09 48.9 -1.2 25 33-57 3-27 (220)
271 1zd8_A GTP:AMP phosphotransfer 97.1 4.3E-05 1.5E-09 49.3 -1.3 25 32-56 5-29 (227)
272 1v5w_A DMC1, meiotic recombina 97.1 5.5E-05 1.9E-09 52.2 -0.8 28 30-57 118-145 (343)
273 1moz_A ARL1, ADP-ribosylation 97.1 4.8E-05 1.6E-09 46.5 -1.1 24 33-56 17-40 (183)
274 3b1v_A Ferrous iron uptake tra 97.1 4.5E-05 1.5E-09 51.3 -1.3 23 36-58 5-27 (272)
275 1fzq_A ADP-ribosylation factor 97.1 4.9E-05 1.7E-09 47.1 -1.1 29 35-63 17-49 (181)
276 3fb4_A Adenylate kinase; psych 97.1 4.3E-05 1.5E-09 48.6 -1.4 21 36-56 2-22 (216)
277 3bos_A Putative DNA replicatio 97.0 4.7E-05 1.6E-09 48.3 -1.3 28 33-60 51-78 (242)
278 2pbr_A DTMP kinase, thymidylat 97.0 4.8E-05 1.6E-09 47.2 -1.3 22 36-57 2-23 (195)
279 3tw8_B RAS-related protein RAB 97.0 5.7E-05 2E-09 45.8 -1.0 22 36-57 11-32 (181)
280 1zak_A Adenylate kinase; ATP:A 97.0 4.8E-05 1.7E-09 48.8 -1.4 25 33-57 4-28 (222)
281 1qf9_A UMP/CMP kinase, protein 97.0 5E-05 1.7E-09 47.0 -1.4 23 34-56 6-28 (194)
282 2e87_A Hypothetical protein PH 97.0 6.2E-05 2.1E-09 51.9 -1.0 26 33-58 166-191 (357)
283 2z43_A DNA repair and recombin 97.0 6.5E-05 2.2E-09 51.3 -1.0 28 30-57 103-130 (324)
284 1njg_A DNA polymerase III subu 97.0 1.7E-05 6E-10 49.7 -3.6 40 19-58 27-69 (250)
285 1e6c_A Shikimate kinase; phosp 97.0 4.6E-05 1.6E-09 46.6 -1.6 21 36-56 4-24 (173)
286 1ukz_A Uridylate kinase; trans 97.0 6.2E-05 2.1E-09 47.4 -1.0 25 32-56 13-37 (203)
287 2cdn_A Adenylate kinase; phosp 97.0 5.9E-05 2E-09 47.6 -1.2 26 32-57 18-43 (201)
288 3dl0_A Adenylate kinase; phosp 97.0 5.3E-05 1.8E-09 48.2 -1.4 21 36-56 2-22 (216)
289 2nzj_A GTP-binding protein REM 97.0 5.4E-05 1.8E-09 45.8 -1.3 23 36-58 6-28 (175)
290 2w58_A DNAI, primosome compone 97.0 6.1E-05 2.1E-09 47.4 -1.1 31 35-65 55-85 (202)
291 2yc2_C IFT27, small RAB-relate 97.0 0.00015 5E-09 45.1 0.7 23 35-57 21-43 (208)
292 1fnn_A CDC6P, cell division co 97.0 4.7E-05 1.6E-09 51.7 -1.7 26 36-61 46-71 (389)
293 1z2a_A RAS-related protein RAB 97.0 4.9E-05 1.7E-09 45.6 -1.5 22 36-57 7-28 (168)
294 2ce2_X GTPase HRAS; signaling 97.0 4.9E-05 1.7E-09 45.2 -1.6 22 36-57 5-26 (166)
295 2erx_A GTP-binding protein DI- 97.0 5.7E-05 2E-09 45.4 -1.3 21 36-56 5-25 (172)
296 3pqc_A Probable GTP-binding pr 97.0 5.9E-05 2E-09 46.4 -1.3 23 36-58 25-47 (195)
297 1svi_A GTP-binding protein YSX 97.0 5.9E-05 2E-09 46.6 -1.3 23 35-57 24-46 (195)
298 2pt5_A Shikimate kinase, SK; a 97.0 5.9E-05 2E-09 46.0 -1.3 21 36-56 2-22 (168)
299 1uj2_A Uridine-cytidine kinase 97.0 6.3E-05 2.1E-09 49.4 -1.4 23 34-56 22-44 (252)
300 3q85_A GTP-binding protein REM 97.0 6.2E-05 2.1E-09 45.4 -1.3 22 36-57 4-25 (169)
301 3t1o_A Gliding protein MGLA; G 97.0 5.1E-05 1.8E-09 46.6 -1.7 24 36-59 16-39 (198)
302 1kao_A RAP2A; GTP-binding prot 96.9 5.8E-05 2E-09 45.0 -1.5 21 36-56 5-25 (167)
303 1sxj_D Activator 1 41 kDa subu 96.9 4.3E-05 1.5E-09 51.5 -2.3 40 19-58 41-82 (353)
304 2dyk_A GTP-binding protein; GT 96.9 5.9E-05 2E-09 45.0 -1.5 22 36-57 3-24 (161)
305 1u8z_A RAS-related protein RAL 96.9 5.9E-05 2E-09 45.0 -1.5 22 36-57 6-27 (168)
306 1zuh_A Shikimate kinase; alpha 96.9 6.6E-05 2.2E-09 46.1 -1.4 22 35-56 8-29 (168)
307 2lkc_A Translation initiation 96.9 7.8E-05 2.7E-09 45.3 -1.0 24 33-56 7-30 (178)
308 3cbq_A GTP-binding protein REM 96.9 0.00011 3.6E-09 46.3 -0.5 23 36-58 25-47 (195)
309 3lxw_A GTPase IMAP family memb 96.9 7.2E-05 2.5E-09 49.2 -1.3 25 34-58 21-45 (247)
310 1z08_A RAS-related protein RAB 96.9 6.4E-05 2.2E-09 45.3 -1.5 22 36-57 8-29 (170)
311 2cxx_A Probable GTP-binding pr 96.9 7.1E-05 2.4E-09 45.9 -1.3 23 36-58 3-25 (190)
312 1z0j_A RAB-22, RAS-related pro 96.9 6.3E-05 2.2E-09 45.2 -1.5 23 36-58 8-30 (170)
313 1ky3_A GTP-binding protein YPT 96.9 6.4E-05 2.2E-09 45.6 -1.5 22 36-57 10-31 (182)
314 1g16_A RAS-related protein SEC 96.9 6.4E-05 2.2E-09 45.2 -1.6 22 36-57 5-26 (170)
315 2fn4_A P23, RAS-related protei 96.9 6.5E-05 2.2E-09 45.6 -1.6 22 36-57 11-32 (181)
316 1c1y_A RAS-related protein RAP 96.9 6.7E-05 2.3E-09 45.0 -1.5 21 36-56 5-25 (167)
317 3l0i_B RAS-related protein RAB 96.9 0.00017 5.7E-09 45.1 0.3 23 35-57 34-56 (199)
318 2iyv_A Shikimate kinase, SK; t 96.9 6.8E-05 2.3E-09 46.6 -1.6 22 35-56 3-24 (184)
319 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 9E-05 3.1E-09 49.0 -1.1 25 33-57 3-27 (260)
320 3t5d_A Septin-7; GTP-binding p 96.9 9.1E-05 3.1E-09 49.2 -1.1 22 36-57 10-31 (274)
321 1ek0_A Protein (GTP-binding pr 96.9 7E-05 2.4E-09 44.9 -1.5 22 36-57 5-26 (170)
322 1l8q_A Chromosomal replication 96.9 7.4E-05 2.5E-09 50.4 -1.6 28 34-61 37-64 (324)
323 4djt_A GTP-binding nuclear pro 96.9 0.00014 4.7E-09 46.0 -0.3 22 36-57 13-34 (218)
324 1wms_A RAB-9, RAB9, RAS-relate 96.9 7.4E-05 2.5E-09 45.4 -1.5 22 36-57 9-30 (177)
325 3clv_A RAB5 protein, putative; 96.9 7.5E-05 2.6E-09 45.8 -1.5 22 36-57 9-30 (208)
326 2f6r_A COA synthase, bifunctio 96.9 8.7E-05 3E-09 49.9 -1.3 22 34-55 75-96 (281)
327 3iev_A GTP-binding protein ERA 96.9 9.5E-05 3.3E-09 50.2 -1.2 25 33-57 9-33 (308)
328 1ko7_A HPR kinase/phosphatase; 96.8 0.00016 5.3E-09 50.1 -0.2 38 18-56 129-166 (314)
329 3b9p_A CG5977-PA, isoform A; A 96.8 9.3E-05 3.2E-09 49.1 -1.3 26 33-58 53-78 (297)
330 4dsu_A GTPase KRAS, isoform 2B 96.8 8E-05 2.7E-09 45.5 -1.5 22 36-57 6-27 (189)
331 3iby_A Ferrous iron transport 96.8 9.4E-05 3.2E-09 49.1 -1.3 23 36-58 3-25 (256)
332 3tlx_A Adenylate kinase 2; str 96.8 0.00011 3.7E-09 48.3 -1.0 25 32-56 27-51 (243)
333 1r2q_A RAS-related protein RAB 96.8 8E-05 2.8E-09 44.6 -1.5 21 36-56 8-28 (170)
334 2xb4_A Adenylate kinase; ATP-b 96.8 9.4E-05 3.2E-09 47.8 -1.3 21 36-56 2-22 (223)
335 3bc1_A RAS-related protein RAB 96.8 8.3E-05 2.8E-09 45.5 -1.5 21 36-56 13-33 (195)
336 2grj_A Dephospho-COA kinase; T 96.8 9.4E-05 3.2E-09 47.5 -1.4 24 34-57 12-35 (192)
337 2oil_A CATX-8, RAS-related pro 96.8 8.5E-05 2.9E-09 46.0 -1.5 22 36-57 27-48 (193)
338 2hxs_A RAB-26, RAS-related pro 96.8 9.8E-05 3.3E-09 44.8 -1.3 22 36-57 8-29 (178)
339 2h57_A ADP-ribosylation factor 96.8 0.00012 4E-09 45.3 -1.0 24 35-58 22-45 (190)
340 2dby_A GTP-binding protein; GD 96.8 8.8E-05 3E-09 52.1 -1.8 23 36-58 3-25 (368)
341 1upt_A ARL1, ADP-ribosylation 96.8 9.3E-05 3.2E-09 44.6 -1.5 23 34-56 7-29 (171)
342 3be4_A Adenylate kinase; malar 96.8 0.00012 4.1E-09 47.0 -1.1 24 33-56 4-27 (217)
343 2a9k_A RAS-related protein RAL 96.8 9.8E-05 3.4E-09 45.0 -1.5 22 36-57 20-41 (187)
344 1wf3_A GTP-binding protein; GT 96.8 0.00012 4E-09 49.8 -1.3 22 36-57 9-30 (301)
345 2y8e_A RAB-protein 6, GH09086P 96.8 9.8E-05 3.3E-09 44.7 -1.6 21 36-56 16-36 (179)
346 2xtp_A GTPase IMAP family memb 96.8 0.00012 4.1E-09 47.9 -1.3 23 35-57 23-45 (260)
347 1sky_E F1-ATPase, F1-ATP synth 96.8 9.5E-05 3.2E-09 53.8 -1.9 43 23-66 141-183 (473)
348 3con_A GTPase NRAS; structural 96.8 0.0001 3.5E-09 45.5 -1.5 22 36-57 23-44 (190)
349 1z0f_A RAB14, member RAS oncog 96.8 0.0001 3.5E-09 44.6 -1.5 22 36-57 17-38 (179)
350 2v3c_C SRP54, signal recogniti 96.8 0.00011 3.9E-09 52.5 -1.5 39 29-67 92-132 (432)
351 1r8s_A ADP-ribosylation factor 96.8 0.0001 3.5E-09 44.2 -1.5 21 36-56 2-22 (164)
352 2qmh_A HPR kinase/phosphorylas 96.7 0.00026 8.8E-09 46.6 0.3 36 19-55 20-55 (205)
353 2g6b_A RAS-related protein RAB 96.7 0.0001 3.6E-09 44.8 -1.5 22 36-57 12-33 (180)
354 1p5z_B DCK, deoxycytidine kina 96.7 0.00018 6.1E-09 47.4 -0.6 27 32-58 22-48 (263)
355 1e4v_A Adenylate kinase; trans 96.7 0.00012 4.1E-09 46.7 -1.4 21 36-56 2-22 (214)
356 1nrj_B SR-beta, signal recogni 96.7 0.00011 3.8E-09 46.4 -1.5 23 36-58 14-36 (218)
357 1ksh_A ARF-like protein 2; sma 96.7 0.00014 4.7E-09 44.7 -1.2 25 33-57 17-41 (186)
358 4bas_A ADP-ribosylation factor 96.7 0.00015 5.1E-09 44.8 -1.0 24 34-57 17-40 (199)
359 1vg8_A RAS-related protein RAB 96.7 0.00012 4.1E-09 45.6 -1.5 22 36-57 10-31 (207)
360 2bme_A RAB4A, RAS-related prot 96.7 0.00012 4E-09 44.8 -1.6 22 36-57 12-33 (186)
361 2efe_B Small GTP-binding prote 96.7 0.00012 4.2E-09 44.5 -1.5 22 36-57 14-35 (181)
362 2bov_A RAla, RAS-related prote 96.7 0.00012 4.2E-09 45.5 -1.5 22 36-57 16-37 (206)
363 1ltq_A Polynucleotide kinase; 96.7 0.00014 4.8E-09 48.4 -1.4 22 35-56 3-24 (301)
364 2gf0_A GTP-binding protein DI- 96.7 0.00012 4.2E-09 45.2 -1.6 21 36-56 10-30 (199)
365 3i8s_A Ferrous iron transport 96.7 0.00014 4.9E-09 48.5 -1.3 23 36-58 5-27 (274)
366 3tkl_A RAS-related protein RAB 96.7 0.00013 4.3E-09 45.1 -1.5 22 36-57 18-39 (196)
367 3a1s_A Iron(II) transport prot 96.7 0.00015 5E-09 48.2 -1.3 23 36-58 7-29 (258)
368 2il1_A RAB12; G-protein, GDP, 96.7 0.00016 5.5E-09 45.0 -1.0 23 36-58 28-50 (192)
369 1m7b_A RND3/RHOE small GTP-bin 96.7 0.00013 4.3E-09 45.1 -1.6 22 36-57 9-30 (184)
370 1jbk_A CLPB protein; beta barr 96.7 0.00016 5.4E-09 43.9 -1.1 26 33-58 42-67 (195)
371 3th5_A RAS-related C3 botulinu 95.7 0.00028 9.5E-09 44.2 0.0 23 34-56 30-52 (204)
372 3h4m_A Proteasome-activating n 96.7 0.00014 4.6E-09 48.0 -1.5 28 31-58 48-75 (285)
373 2i1q_A DNA repair and recombin 96.7 0.00018 6.1E-09 48.8 -1.0 27 30-56 94-120 (322)
374 1jwy_B Dynamin A GTPase domain 96.7 0.00016 5.3E-09 48.4 -1.3 23 36-58 26-48 (315)
375 3zvl_A Bifunctional polynucleo 96.7 0.00018 6.2E-09 50.8 -1.0 26 31-56 255-280 (416)
376 2fg5_A RAB-22B, RAS-related pr 96.6 0.00014 4.7E-09 45.3 -1.6 22 36-57 25-46 (192)
377 3kkq_A RAS-related protein M-R 96.6 0.00014 4.7E-09 44.5 -1.5 22 36-57 20-41 (183)
378 3oes_A GTPase rhebl1; small GT 96.6 0.00014 4.8E-09 45.6 -1.6 26 33-58 23-48 (201)
379 2zts_A Putative uncharacterize 96.6 0.00029 9.9E-09 45.1 -0.1 25 30-54 26-50 (251)
380 2qu8_A Putative nucleolar GTP- 96.6 0.00017 5.9E-09 46.2 -1.2 24 34-57 29-52 (228)
381 2gf9_A RAS-related protein RAB 96.6 0.00014 4.9E-09 44.9 -1.5 22 36-57 24-45 (189)
382 1mh1_A RAC1; GTP-binding, GTPa 96.6 0.00014 4.8E-09 44.3 -1.5 20 36-55 7-26 (186)
383 2wsm_A Hydrogenase expression/ 96.6 0.00015 5.1E-09 46.0 -1.5 23 35-57 31-53 (221)
384 3v9p_A DTMP kinase, thymidylat 96.6 0.00018 6.3E-09 47.4 -1.1 28 31-58 22-49 (227)
385 3d3q_A TRNA delta(2)-isopenten 96.6 0.00017 5.9E-09 50.4 -1.4 23 35-57 8-30 (340)
386 1zbd_A Rabphilin-3A; G protein 96.6 0.00017 5.7E-09 45.0 -1.3 22 36-57 10-31 (203)
387 2r62_A Cell division protease 96.6 8E-05 2.7E-09 48.8 -2.9 28 29-58 41-68 (268)
388 3t5g_A GTP-binding protein RHE 96.6 0.00015 5.1E-09 44.3 -1.6 20 36-55 8-27 (181)
389 4dhe_A Probable GTP-binding pr 96.6 7E-05 2.4E-09 47.4 -3.1 24 35-58 30-53 (223)
390 2fv8_A H6, RHO-related GTP-bin 96.6 0.00015 5.1E-09 45.7 -1.6 35 23-57 14-48 (207)
391 3a8t_A Adenylate isopentenyltr 96.6 0.00021 7.1E-09 50.0 -1.0 26 33-58 39-64 (339)
392 3dz8_A RAS-related protein RAB 96.6 0.00015 5.2E-09 44.9 -1.6 22 36-57 25-46 (191)
393 1zj6_A ADP-ribosylation factor 96.6 0.00017 5.8E-09 44.5 -1.3 23 34-56 16-38 (187)
394 2h17_A ADP-ribosylation factor 96.6 0.00016 5.5E-09 44.5 -1.5 22 35-56 22-43 (181)
395 3llu_A RAS-related GTP-binding 96.6 0.00018 6.1E-09 45.0 -1.3 23 36-58 22-44 (196)
396 1ak2_A Adenylate kinase isoenz 96.6 0.0002 6.7E-09 46.4 -1.1 25 33-57 15-39 (233)
397 1z06_A RAS-related protein RAB 96.6 0.00016 5.5E-09 44.7 -1.5 21 36-56 22-42 (189)
398 2o52_A RAS-related protein RAB 96.6 0.00018 6.3E-09 45.1 -1.3 23 35-57 26-48 (200)
399 3bh0_A DNAB-like replicative h 96.6 0.00012 4.2E-09 49.9 -2.3 36 21-56 55-90 (315)
400 2a5j_A RAS-related protein RAB 96.6 0.00017 5.8E-09 44.7 -1.5 22 36-57 23-44 (191)
401 2bcg_Y Protein YP2, GTP-bindin 96.6 0.00017 5.8E-09 45.2 -1.6 22 36-57 10-31 (206)
402 4edh_A DTMP kinase, thymidylat 96.6 0.00022 7.4E-09 46.4 -1.1 28 32-59 4-31 (213)
403 4dcu_A GTP-binding protein ENG 96.6 0.00024 8.2E-09 50.5 -1.0 23 36-58 25-47 (456)
404 1u94_A RECA protein, recombina 96.5 0.00021 7.2E-09 49.9 -1.3 27 31-57 60-86 (356)
405 1x3s_A RAS-related protein RAB 96.5 0.00017 6E-09 44.3 -1.5 23 35-57 16-38 (195)
406 2ocp_A DGK, deoxyguanosine kin 96.5 0.00022 7.6E-09 46.3 -1.1 25 34-58 2-26 (241)
407 2cjw_A GTP-binding protein GEM 96.5 0.00018 6.1E-09 45.1 -1.5 21 36-56 8-28 (192)
408 2aka_B Dynamin-1; fusion prote 96.5 0.00021 7.3E-09 47.2 -1.3 23 36-58 28-50 (299)
409 2ew1_A RAS-related protein RAB 96.5 0.00018 6.2E-09 45.6 -1.6 22 35-56 27-48 (201)
410 2f7s_A C25KG, RAS-related prot 96.5 0.00021 7.1E-09 45.1 -1.3 22 36-57 27-48 (217)
411 3reg_A RHO-like small GTPase; 96.5 0.00018 6.3E-09 44.6 -1.5 22 36-57 25-46 (194)
412 3cph_A RAS-related protein SEC 96.5 0.00019 6.5E-09 44.9 -1.5 24 34-57 20-43 (213)
413 2atv_A RERG, RAS-like estrogen 96.5 0.00019 6.6E-09 44.6 -1.5 23 35-57 29-51 (196)
414 3bwd_D RAC-like GTP-binding pr 96.5 0.00021 7.1E-09 43.5 -1.4 22 35-56 9-30 (182)
415 2p5s_A RAS and EF-hand domain 96.5 0.0002 6.7E-09 44.8 -1.5 26 32-57 26-51 (199)
416 2x77_A ADP-ribosylation factor 96.5 0.00025 8.5E-09 43.7 -1.1 23 34-56 22-44 (189)
417 3cnl_A YLQF, putative uncharac 96.5 0.00022 7.4E-09 47.7 -1.4 25 35-59 100-124 (262)
418 1zd9_A ADP-ribosylation factor 96.5 0.0002 6.8E-09 44.4 -1.5 23 34-56 22-44 (188)
419 2j1l_A RHO-related GTP-binding 96.5 0.00023 7.7E-09 45.2 -1.3 21 36-56 36-56 (214)
420 2q3h_A RAS homolog gene family 96.5 0.00023 7.8E-09 44.3 -1.3 25 33-57 19-43 (201)
421 2b6h_A ADP-ribosylation factor 96.5 0.00026 8.8E-09 44.2 -1.1 24 33-56 28-51 (192)
422 4a1f_A DNAB helicase, replicat 96.5 0.00016 5.4E-09 50.4 -2.3 49 21-69 33-81 (338)
423 1gwn_A RHO-related GTP-binding 96.5 0.00021 7.2E-09 45.4 -1.6 23 35-57 29-51 (205)
424 3def_A T7I23.11 protein; chlor 96.5 0.00024 8.2E-09 46.9 -1.3 24 35-58 37-60 (262)
425 3lv8_A DTMP kinase, thymidylat 96.5 0.00026 9E-09 46.9 -1.2 27 33-59 26-52 (236)
426 3umf_A Adenylate kinase; rossm 96.5 0.00029 9.9E-09 46.2 -1.0 29 28-56 23-51 (217)
427 2fh5_B SR-beta, signal recogni 96.5 0.00022 7.5E-09 44.9 -1.5 22 36-57 9-30 (214)
428 2h92_A Cytidylate kinase; ross 96.4 0.00023 7.9E-09 45.2 -1.5 24 34-57 3-26 (219)
429 2p65_A Hypothetical protein PF 96.4 0.00021 7.3E-09 43.4 -1.6 26 33-58 42-67 (187)
430 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.00029 1E-08 45.6 -1.1 27 32-58 37-63 (262)
431 1h65_A Chloroplast outer envel 96.4 0.00027 9.3E-09 46.7 -1.3 23 36-58 41-63 (270)
432 3exa_A TRNA delta(2)-isopenten 96.4 0.00032 1.1E-08 48.8 -1.0 23 34-56 3-25 (322)
433 3crm_A TRNA delta(2)-isopenten 96.4 0.00029 9.8E-09 48.9 -1.3 23 35-57 6-28 (323)
434 4tmk_A Protein (thymidylate ki 96.4 0.0003 1E-08 45.9 -1.2 27 33-59 2-28 (213)
435 3c5c_A RAS-like protein 12; GD 96.4 0.00025 8.4E-09 44.1 -1.5 21 36-56 23-43 (187)
436 2gco_A H9, RHO-related GTP-bin 96.4 0.00025 8.4E-09 44.5 -1.6 22 36-57 27-48 (201)
437 2iwr_A Centaurin gamma 1; ANK 96.4 0.00023 7.8E-09 43.3 -1.7 21 36-56 9-29 (178)
438 4gzl_A RAS-related C3 botulinu 96.4 0.00074 2.5E-08 42.5 0.5 22 34-55 30-51 (204)
439 2atx_A Small GTP binding prote 96.4 0.00027 9.2E-09 43.7 -1.6 22 36-57 20-41 (194)
440 2hf9_A Probable hydrogenase ni 96.3 0.00029 9.8E-09 44.8 -1.6 23 35-57 39-61 (226)
441 3tmk_A Thymidylate kinase; pho 96.3 0.00037 1.3E-08 45.6 -1.1 28 32-59 3-30 (216)
442 3ld9_A DTMP kinase, thymidylat 96.3 0.00041 1.4E-08 45.7 -1.0 27 32-58 19-45 (223)
443 2z4s_A Chromosomal replication 96.3 0.00033 1.1E-08 49.8 -1.6 26 34-59 130-155 (440)
444 3dm5_A SRP54, signal recogniti 96.2 0.00063 2.1E-08 49.1 -0.3 35 33-67 99-133 (443)
445 3n70_A Transport activator; si 96.2 0.00065 2.2E-08 41.0 -0.3 27 32-58 22-48 (145)
446 3gj0_A GTP-binding nuclear pro 96.2 0.00054 1.9E-08 43.4 -0.7 19 36-54 17-35 (221)
447 3pvs_A Replication-associated 96.2 0.00017 5.8E-09 51.6 -3.5 42 18-59 29-75 (447)
448 2g3y_A GTP-binding protein GEM 96.2 0.00043 1.5E-08 44.7 -1.3 21 36-56 39-59 (211)
449 2v1u_A Cell division control p 96.2 0.00042 1.4E-08 46.8 -1.4 27 32-58 42-68 (387)
450 2hup_A RAS-related protein RAB 96.2 0.00037 1.3E-08 43.8 -1.6 22 35-56 30-51 (201)
451 3cpj_B GTP-binding protein YPT 96.2 0.00039 1.3E-08 44.3 -1.5 22 36-57 15-36 (223)
452 2xau_A PRE-mRNA-splicing facto 96.2 0.00035 1.2E-08 53.0 -2.1 29 30-58 105-133 (773)
453 1ofh_A ATP-dependent HSL prote 96.1 0.00014 4.9E-09 48.0 -3.8 25 34-58 50-74 (310)
454 4hlc_A DTMP kinase, thymidylat 96.1 0.00053 1.8E-08 44.3 -1.1 25 34-58 2-26 (205)
455 2q6t_A DNAB replication FORK h 96.1 0.00055 1.9E-08 48.5 -1.1 38 22-59 188-225 (444)
456 3foz_A TRNA delta(2)-isopenten 96.1 0.0006 2E-08 47.4 -1.0 24 34-57 10-33 (316)
457 2j0v_A RAC-like GTP-binding pr 96.1 0.00045 1.5E-08 43.4 -1.6 22 35-56 10-31 (212)
458 3q3j_B RHO-related GTP-binding 96.1 0.00046 1.6E-08 43.9 -1.5 23 35-57 28-50 (214)
459 2hjg_A GTP-binding protein ENG 96.0 0.00066 2.3E-08 48.0 -1.0 23 36-58 5-27 (436)
460 2x2e_A Dynamin-1; nitration, h 96.0 0.0007 2.4E-08 46.6 -1.0 23 36-58 33-55 (353)
461 2orw_A Thymidine kinase; TMTK, 96.0 0.00098 3.3E-08 42.2 -0.2 22 33-54 2-24 (184)
462 3eph_A TRNA isopentenyltransfe 96.0 0.00073 2.5E-08 48.4 -1.1 22 35-56 3-24 (409)
463 3uk6_A RUVB-like 2; hexameric 96.0 0.00094 3.2E-08 45.3 -0.5 27 33-59 69-95 (368)
464 3sr0_A Adenylate kinase; phosp 95.9 0.00063 2.2E-08 44.1 -1.4 21 36-56 2-22 (206)
465 3syl_A Protein CBBX; photosynt 95.9 0.00072 2.5E-08 44.8 -1.2 26 33-58 66-91 (309)
466 1xp8_A RECA protein, recombina 95.9 0.00071 2.4E-08 47.4 -1.3 27 30-56 70-96 (366)
467 1lnz_A SPO0B-associated GTP-bi 95.9 0.0013 4.5E-08 45.6 0.1 33 26-58 150-182 (342)
468 2r44_A Uncharacterized protein 95.9 0.00012 4.2E-09 49.4 -5.1 42 17-58 29-70 (331)
469 2chg_A Replication factor C sm 95.9 0.00062 2.1E-08 42.1 -1.5 22 36-57 40-61 (226)
470 3co5_A Putative two-component 95.9 0.00096 3.3E-08 40.2 -0.7 26 32-57 25-50 (143)
471 3p32_A Probable GTPase RV1496/ 95.9 0.0011 3.7E-08 45.7 -0.5 27 32-58 77-103 (355)
472 1wxq_A GTP-binding protein; st 95.9 0.00076 2.6E-08 47.6 -1.3 23 36-58 2-24 (397)
473 3r7w_A Gtpase1, GTP-binding pr 95.8 0.00097 3.3E-08 45.1 -1.0 24 34-57 3-26 (307)
474 1d2n_A N-ethylmaleimide-sensit 95.8 0.00096 3.3E-08 43.9 -1.1 26 32-57 62-87 (272)
475 1puj_A YLQF, conserved hypothe 95.7 0.0011 3.8E-08 44.7 -0.9 24 35-58 121-144 (282)
476 2qen_A Walker-type ATPase; unk 95.7 0.00034 1.2E-08 46.6 -3.4 39 18-56 15-53 (350)
477 3geh_A MNME, tRNA modification 95.7 0.00075 2.6E-08 48.6 -1.9 26 32-57 222-247 (462)
478 3hws_A ATP-dependent CLP prote 95.7 0.00098 3.3E-08 45.7 -1.4 26 33-58 50-75 (363)
479 3nbx_X ATPase RAVA; AAA+ ATPas 95.7 0.00047 1.6E-08 50.2 -3.1 43 16-58 23-65 (500)
480 1jr3_A DNA polymerase III subu 95.6 0.00034 1.2E-08 47.3 -3.8 41 19-59 20-63 (373)
481 2qby_B CDC6 homolog 3, cell di 95.6 0.0012 4.1E-08 44.8 -1.2 25 34-58 45-69 (384)
482 2qpt_A EH domain-containing pr 95.6 0.0012 4.2E-08 48.3 -1.3 26 33-58 64-89 (550)
483 3t15_A Ribulose bisphosphate c 95.6 0.0012 4.3E-08 44.3 -1.1 24 35-58 37-60 (293)
484 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.0012 4.1E-08 45.0 -1.3 26 33-58 44-69 (322)
485 2vhj_A Ntpase P4, P4; non- hyd 95.6 0.0013 4.6E-08 45.9 -1.0 28 29-56 118-145 (331)
486 2qgz_A Helicase loader, putati 95.5 0.0013 4.4E-08 44.7 -1.2 26 34-59 152-177 (308)
487 3gee_A MNME, tRNA modification 95.5 0.0014 4.6E-08 47.4 -1.2 25 33-57 232-256 (476)
488 3sjy_A Translation initiation 95.5 0.0013 4.6E-08 46.0 -1.3 22 36-57 10-31 (403)
489 3ec1_A YQEH GTPase; atnos1, at 95.4 0.0012 4.2E-08 46.0 -1.6 25 33-57 161-185 (369)
490 1x6v_B Bifunctional 3'-phospho 95.4 0.0017 5.7E-08 48.7 -1.1 26 33-58 51-76 (630)
491 3o47_A ADP-ribosylation factor 95.4 0.0017 5.9E-08 44.4 -0.9 21 36-56 167-187 (329)
492 3gmt_A Adenylate kinase; ssgci 95.4 0.0014 4.9E-08 43.4 -1.3 22 35-56 9-30 (230)
493 3d8b_A Fidgetin-like protein 1 95.4 0.0016 5.3E-08 44.9 -1.2 25 33-57 116-140 (357)
494 1hqc_A RUVB; extended AAA-ATPa 95.4 0.0016 5.5E-08 43.3 -1.1 24 34-57 38-61 (324)
495 3qq5_A Small GTP-binding prote 95.4 0.003 1E-07 45.0 0.2 23 36-58 36-58 (423)
496 1m8p_A Sulfate adenylyltransfe 95.3 0.0018 6.2E-08 47.8 -1.0 26 33-58 395-420 (573)
497 3eie_A Vacuolar protein sortin 95.3 0.0017 5.9E-08 43.9 -1.1 24 34-57 51-74 (322)
498 1um8_A ATP-dependent CLP prote 95.3 0.0015 5.2E-08 44.9 -1.4 25 34-58 72-96 (376)
499 3h2y_A GTPase family protein; 95.3 0.0014 4.7E-08 45.8 -1.6 25 33-57 159-183 (368)
500 3pfi_A Holliday junction ATP-d 95.3 0.0014 4.9E-08 44.1 -1.5 23 35-57 56-78 (338)
No 1
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.86 E-value=1.1e-23 Score=142.78 Aligned_cols=68 Identities=24% Similarity=0.551 Sum_probs=63.5
Q ss_pred hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
..++++++++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNS 77 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTT
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCc
Confidence 35788889999999999999999999999999999999999999999999999999999999987653
No 2
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.85 E-value=2.3e-23 Score=137.96 Aligned_cols=65 Identities=22% Similarity=0.341 Sum_probs=60.7
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 5 l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECC
T ss_pred EEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 56777888898889999999999999999999999999999999999999999999999998764
No 3
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=3.1e-23 Score=138.50 Aligned_cols=66 Identities=29% Similarity=0.474 Sum_probs=61.6
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 71 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDIT 71 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECT
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence 467788889998888999999999999999999999999999999999999999999999998764
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.85 E-value=4.2e-23 Score=140.78 Aligned_cols=65 Identities=32% Similarity=0.562 Sum_probs=60.3
Q ss_pred hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
.++++++++.|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence 4678888999965 4599999999999999999999999999999999999999999999999887
No 5
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.85 E-value=3.5e-23 Score=139.39 Aligned_cols=66 Identities=26% Similarity=0.446 Sum_probs=61.7
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~ 72 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT 72 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECT
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 367788899998889999999999999999999999999999999999999999999999998764
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.84 E-value=5.1e-23 Score=139.12 Aligned_cols=66 Identities=20% Similarity=0.332 Sum_probs=61.8
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNIN 71 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECC
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcc
Confidence 477788899998889999999999999999999999999999999999999999999999998764
No 7
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.84 E-value=1.4e-22 Score=135.34 Aligned_cols=65 Identities=26% Similarity=0.492 Sum_probs=59.7
Q ss_pred hccccccCCC-CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~-~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.| +++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEEST
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 4567778888 6678999999999999999999999999999999999999999999999998764
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.84 E-value=6.1e-23 Score=139.16 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=61.8
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~ 89 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK 89 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 477888899998889999999999999999999999999999999999999999999999998763
No 9
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.84 E-value=7.9e-23 Score=137.20 Aligned_cols=67 Identities=24% Similarity=0.508 Sum_probs=61.7
Q ss_pred hhhccccccCCC--CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 7 QTVDSHLETFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 7 ~~~~~~~~~~~~--~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
-+++++++++.| +++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~ 74 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA 74 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 367788899999 4678999999999999999999999999999999999999999999999998764
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.84 E-value=8.1e-23 Score=138.04 Aligned_cols=67 Identities=37% Similarity=0.539 Sum_probs=61.9
Q ss_pred hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
..++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVV 80 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 3567788888898889999999999999999999999999999999999999999999999998764
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.84 E-value=7.3e-23 Score=136.44 Aligned_cols=65 Identities=26% Similarity=0.441 Sum_probs=58.5
Q ss_pred hccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcc
Confidence 456777888863 46999999999999999999999999999999999999999999999998764
No 12
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.84 E-value=1.1e-22 Score=138.74 Aligned_cols=66 Identities=27% Similarity=0.359 Sum_probs=61.8
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~ 86 (279)
T 2ihy_A 21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPG 86 (279)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC
T ss_pred eEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcc
Confidence 367788899998889999999999999999999999999999999999999999999999998764
No 13
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.83 E-value=1.6e-22 Score=133.72 Aligned_cols=64 Identities=27% Similarity=0.475 Sum_probs=59.6
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
.++++++++.|++ ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 10 ~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEh
Confidence 4567788888988 999999999999999999999999999999999999999999999999775
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.83 E-value=2.8e-22 Score=136.10 Aligned_cols=66 Identities=24% Similarity=0.419 Sum_probs=61.5
Q ss_pred hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~ 84 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLV 84 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 4778888999976 78999999999999999999999999999999999999999999999998764
No 15
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.83 E-value=1.6e-22 Score=142.45 Aligned_cols=65 Identities=28% Similarity=0.490 Sum_probs=61.6
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
.++++++++.|++.++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 46778889999999999999999999999999999999999999999999999999999999887
No 16
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.83 E-value=2.7e-22 Score=142.27 Aligned_cols=66 Identities=24% Similarity=0.414 Sum_probs=61.9
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
++++++++.|++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 4 l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~ 69 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND 69 (381)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred EEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCC
Confidence 677788999999999999999999999999999999999999999999999999999999987653
No 17
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.82 E-value=2.3e-22 Score=134.88 Aligned_cols=65 Identities=26% Similarity=0.350 Sum_probs=60.1
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeece--eecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl--~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++.
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 5667778888888999999999999999999999999999999999998 7899999999998764
No 18
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.82 E-value=7.2e-22 Score=138.96 Aligned_cols=66 Identities=30% Similarity=0.547 Sum_probs=61.5
Q ss_pred hhccccccCCC-CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~-~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.| +++++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 14 ~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~ 80 (355)
T 1z47_A 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVT 80 (355)
T ss_dssp EEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred eEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECC
Confidence 46778889999 8888999999999999999999999999999999999999999999999998764
No 19
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.82 E-value=5e-22 Score=134.40 Aligned_cols=65 Identities=28% Similarity=0.526 Sum_probs=58.5
Q ss_pred hccccccCCCC--C---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYD--T---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~--~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+ + +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECC
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECc
Confidence 45667778786 4 57999999999999999999999999999999999999999999999997763
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.82 E-value=6.2e-22 Score=139.38 Aligned_cols=65 Identities=38% Similarity=0.520 Sum_probs=60.8
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECC
Confidence 56777888898889999999999999999999999999999999999999999999999998764
No 21
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.82 E-value=8.3e-22 Score=138.86 Aligned_cols=65 Identities=29% Similarity=0.491 Sum_probs=60.9
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred EEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 56777888898888999999999999999999999999999999999999999999999998764
No 22
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.82 E-value=5.2e-22 Score=134.48 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=60.9
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeece--eecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl--~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|+++++|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++.
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~ 87 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 87 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGG
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 46788889999888999999999999999999999999999999999999 5789999999998764
No 23
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.81 E-value=1.2e-21 Score=129.99 Aligned_cols=62 Identities=27% Similarity=0.488 Sum_probs=57.1
Q ss_pred hhccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 8 TVDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 8 ~~~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
.++++++++.|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 69 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC
Confidence 366778888884 57899999999999999999999999999999999999999999999987
No 24
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.81 E-value=6.9e-22 Score=139.59 Aligned_cols=66 Identities=33% Similarity=0.480 Sum_probs=61.2
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~ 69 (372)
T 1g29_1 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD 69 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECcc
Confidence 567778888888899999999999999999999999999999999999999999999999987643
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.81 E-value=5.8e-22 Score=137.02 Aligned_cols=67 Identities=25% Similarity=0.437 Sum_probs=61.9
Q ss_pred hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++++++++.|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~ 120 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQ 120 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTS
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEccc
Confidence 477888999995 5789999999999999999999999999999999999999999999999988753
No 26
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.81 E-value=1.1e-21 Score=130.85 Aligned_cols=61 Identities=21% Similarity=0.470 Sum_probs=56.5
Q ss_pred hccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 9 VDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 9 ~~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
++++++++.|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 66 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG 66 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 56677788886 57899999999999999999999999999999999999999999999987
No 27
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.81 E-value=9e-22 Score=139.11 Aligned_cols=65 Identities=34% Similarity=0.532 Sum_probs=61.3
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+++++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 12 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred EEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECC
Confidence 67788899998888999999999999999999999999999999999999999999999998764
No 28
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.80 E-value=1.2e-21 Score=138.42 Aligned_cols=66 Identities=26% Similarity=0.430 Sum_probs=59.9
Q ss_pred hhccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|+. ..+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~ 93 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT 93 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECS
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 4677788888853 46999999999999999999999999999999999999999999999998875
No 29
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.80 E-value=1.1e-21 Score=137.60 Aligned_cols=64 Identities=25% Similarity=0.443 Sum_probs=59.5
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|+++ +++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 4567788889887 999999999999999999999999999999999999999999999998764
No 30
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.80 E-value=6e-22 Score=139.06 Aligned_cols=66 Identities=26% Similarity=0.507 Sum_probs=60.8
Q ss_pred hccccccCCCCCcc--ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDTKP--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~~~--vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
++++++++.|++++ +|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 4 l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~ 71 (353)
T 1oxx_K 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS 71 (353)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred EEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcc
Confidence 56677788888888 9999999999999999999999999999999999999999999999987643
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.79 E-value=4.9e-21 Score=129.24 Aligned_cols=65 Identities=22% Similarity=0.385 Sum_probs=59.1
Q ss_pred hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++++++++.|++ +++|+++||+|++|++++|+||||||||||+++|+|+++| +|+|.++|+++.
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVN 84 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGG
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhh
Confidence 4677888998875 4699999999999999999999999999999999999987 899999998764
No 32
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.78 E-value=7.1e-21 Score=127.40 Aligned_cols=62 Identities=24% Similarity=0.386 Sum_probs=56.3
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|++ +|+++||++++ |+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred EEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 456777888865 59999999999 999999999999999999999999999999999998764
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.78 E-value=9.7e-21 Score=134.50 Aligned_cols=66 Identities=26% Similarity=0.390 Sum_probs=60.9
Q ss_pred hhccccccCCC--CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~--~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++++++++.| ++.++|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 19 ~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~ 86 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDS 86 (390)
T ss_dssp CEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTS
T ss_pred eEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCc
Confidence 57888899999 66789999999999999999999999999999999999998 89999999988653
No 34
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.78 E-value=6.2e-21 Score=129.28 Aligned_cols=63 Identities=29% Similarity=0.511 Sum_probs=57.3
Q ss_pred hccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++.|++ +++|+++||+++ |++++|+||||||||||+++|+|+. |++|+|.++|+++.
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECc
Confidence 456677888876 789999999999 9999999999999999999999999 99999999997764
No 35
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.77 E-value=1.4e-20 Score=126.69 Aligned_cols=59 Identities=29% Similarity=0.543 Sum_probs=54.8
Q ss_pred hccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220 9 VDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67 (80)
Q Consensus 9 ~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~ 67 (80)
++++++++.|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 5 l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~ 64 (253)
T 2nq2_C 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV 64 (253)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 56777888888 788999999999999999999999999999999999999999999974
No 36
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.76 E-value=2.7e-20 Score=125.27 Aligned_cols=60 Identities=23% Similarity=0.318 Sum_probs=53.2
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++++++. ++|+++||++++||+++|+||||||||||+++|+|+++|+ |+|.++|+++.
T Consensus 5 l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 5 MQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGG
T ss_pred EEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECC
Confidence 344455554 6999999999999999999999999999999999999999 99999998764
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.76 E-value=4.9e-20 Score=135.11 Aligned_cols=66 Identities=33% Similarity=0.576 Sum_probs=61.3
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++.+++++.|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~ 408 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVR 408 (582)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhh
Confidence 4778888999974 68999999999999999999999999999999999999999999999998764
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.76 E-value=6e-20 Score=134.68 Aligned_cols=67 Identities=27% Similarity=0.593 Sum_probs=61.7
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~ 407 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKD 407 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGG
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence 5778889999964 579999999999999999999999999999999999999999999999988754
No 39
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.76 E-value=7e-20 Score=134.84 Aligned_cols=67 Identities=30% Similarity=0.482 Sum_probs=62.1
Q ss_pred hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+++.+++++.|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~ 421 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRK 421 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGG
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhh
Confidence 5788899999964 679999999999999999999999999999999999999999999999988754
No 40
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.76 E-value=7.5e-20 Score=134.52 Aligned_cols=67 Identities=28% Similarity=0.491 Sum_probs=61.9
Q ss_pred hhccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|+ ++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT 409 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGG
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEccc
Confidence 577888999984 4689999999999999999999999999999999999999999999999998754
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.75 E-value=5.2e-20 Score=134.96 Aligned_cols=67 Identities=25% Similarity=0.466 Sum_probs=61.7
Q ss_pred hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~ 409 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE 409 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTT
T ss_pred cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccc
Confidence 4778888999973 689999999999999999999999999999999999999999999999988653
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.75 E-value=6.8e-20 Score=134.66 Aligned_cols=66 Identities=27% Similarity=0.499 Sum_probs=60.9
Q ss_pred hccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
++.+++++.|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~ 410 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ 410 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhh
Confidence 788889999964 469999999999999999999999999999999999999999999999988753
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.74 E-value=1.3e-19 Score=124.33 Aligned_cols=60 Identities=25% Similarity=0.490 Sum_probs=47.9
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
.++++++++. .+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 40 ~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 99 (290)
T 2bbs_A 40 SLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99 (290)
T ss_dssp ------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS
T ss_pred eEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 3556666664 36799999999999999999999999999999999999999999999987
No 44
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.72 E-value=2.1e-20 Score=118.60 Aligned_cols=64 Identities=20% Similarity=0.180 Sum_probs=57.8
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++..++++.|+++.+++++||++++|++++|+||||||||||+++|+|++ |++|+|.+++.++.
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLV 71 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCE
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeee
Confidence 44556677788888999999999999999999999999999999999999 99999999988764
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.70 E-value=1.4e-18 Score=136.74 Aligned_cols=67 Identities=24% Similarity=0.411 Sum_probs=61.9
Q ss_pred hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+++.+++++.|.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.+
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~ 1145 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKT 1145 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTT
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhh
Confidence 5788899999954 369999999999999999999999999999999999999999999999998764
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.67 E-value=4.3e-18 Score=133.70 Aligned_cols=67 Identities=22% Similarity=0.427 Sum_probs=61.4
Q ss_pred hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+++.+++++.|++ .++|+++||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++..
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~ 456 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGG
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHh
Confidence 5778889999964 469999999999999999999999999999999999999999999999987653
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.66 E-value=6.9e-18 Score=132.56 Aligned_cols=67 Identities=27% Similarity=0.547 Sum_probs=61.3
Q ss_pred hhccccccCCCCCc---cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDTK---PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~~---~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++.+++++.|+++ ++|+++||+|++||+++|+||||||||||+++|.|+++|++|+|.++|+++..
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~ 1099 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQ 1099 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTS
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEccc
Confidence 46778889999653 69999999999999999999999999999999999999999999999988753
No 48
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.64 E-value=1.4e-17 Score=131.15 Aligned_cols=67 Identities=22% Similarity=0.407 Sum_probs=61.9
Q ss_pred hhccccccCCCC---CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYD---TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~---~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+++.++++|.|+ +.++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|+++.+
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~ 484 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRD 484 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchh
Confidence 578889999985 3579999999999999999999999999999999999999999999999988654
No 49
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.64 E-value=8.1e-18 Score=129.99 Aligned_cols=61 Identities=36% Similarity=0.618 Sum_probs=56.6
Q ss_pred hccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 9 VDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 9 ~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
++++++++.|++ +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|++++
T Consensus 672 L~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp EEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred EEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 677888888864 6799999999999999999999999999999999999999999999975
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.58 E-value=4.9e-17 Score=118.88 Aligned_cols=53 Identities=26% Similarity=0.436 Sum_probs=49.2
Q ss_pred ccccCCCCCc-cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCce
Q psy7220 12 HLETFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65 (80)
Q Consensus 12 ~~~~~~~~~~-~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i 65 (80)
+++++.|++. .+++++| +|++||+++|+||||||||||+++|+|+++|++|++
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~ 78 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD 78 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 5778889876 4899999 999999999999999999999999999999999996
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.58 E-value=5e-17 Score=120.45 Aligned_cols=53 Identities=28% Similarity=0.433 Sum_probs=49.5
Q ss_pred ccccCCCCCc-cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCce
Q psy7220 12 HLETFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65 (80)
Q Consensus 12 ~~~~~~~~~~-~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i 65 (80)
+++++.|++. .+++++| ++++||+++|+||||||||||+++|+|+++|++|++
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~ 148 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED 148 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTT
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCcc
Confidence 6788888876 4999999 999999999999999999999999999999999996
No 52
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.57 E-value=1.8e-16 Score=116.11 Aligned_cols=62 Identities=24% Similarity=0.245 Sum_probs=51.9
Q ss_pred ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
+..++++.|++ ..++..+|++++||+++|+||||||||||+++|+|+.+|++|+|.+++..+
T Consensus 271 ~~~~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i 332 (538)
T 3ozx_A 271 KWTKIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQIL 332 (538)
T ss_dssp EECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCE
T ss_pred EEcceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeee
Confidence 33445555655 456777889999999999999999999999999999999999999877654
No 53
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.56 E-value=3e-16 Score=114.08 Aligned_cols=53 Identities=25% Similarity=0.175 Sum_probs=49.9
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
..+|+++||++++ ++++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 4689999999999 9999999999999999999999999999999999988753
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.54 E-value=4.2e-16 Score=115.51 Aligned_cols=58 Identities=33% Similarity=0.437 Sum_probs=50.9
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~ 67 (80)
++..++++.|++ ..|+.++|++++||+++|+||||||||||+++|+|+.+|++|+|.+
T Consensus 358 l~~~~l~~~~~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~ 415 (607)
T 3bk7_A 358 VEYPRLVKDYGS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW 415 (607)
T ss_dssp EEECCEEEECSS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC
T ss_pred EEEeceEEEecc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 445566667765 3688999999999999999999999999999999999999999976
No 55
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.54 E-value=3.4e-16 Score=102.52 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=32.8
Q ss_pred CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
..+..|+++||++++|++++|+||||||||||+++|+|++ | |++.+ +.++
T Consensus 8 ~~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~ 57 (218)
T 1z6g_A 8 HHHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSC 57 (218)
T ss_dssp --------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCE
T ss_pred cccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecc
Confidence 3456899999999999999999999999999999999988 5 99988 6554
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.54 E-value=3.9e-16 Score=114.15 Aligned_cols=58 Identities=33% Similarity=0.414 Sum_probs=50.0
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~ 67 (80)
++..++++.|++ ..++.++|++++||+++|+||||||||||+++|+|+.+|++|+|.+
T Consensus 288 l~~~~l~~~~~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~ 345 (538)
T 1yqt_A 288 VTYPRLVKDYGS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW 345 (538)
T ss_dssp EEECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC
T ss_pred EEEeeEEEEECC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 444555666655 3688889999999999999999999999999999999999999976
No 57
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.51 E-value=4.8e-16 Score=111.54 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=58.1
Q ss_pred hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
.++..++++.|+ +..+|+++ |.+.+|++++|+||||||||||+++|+|+.+|+.|.|.++|+
T Consensus 131 ~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred ceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 577788888887 67899999 999999999999999999999999999999999999999998
No 58
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.51 E-value=3.7e-16 Score=109.32 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=57.8
Q ss_pred hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
.++..++++.|+ +..+++++ |.|.+|++++|+|+||||||||+++|+|+.+|+.|.+.+.|++
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 567778888887 67899999 9999999999999999999999999999999999999998875
No 59
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.49 E-value=1.8e-16 Score=109.65 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=51.1
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~ 68 (80)
.++.+++++.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|...
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~ 157 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSF 157 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECG
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEE
Confidence 367778888887 78999999999999999999999999999999999998 7988653
No 60
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.49 E-value=2.8e-16 Score=109.19 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=60.6
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.++..++++.|+.+.++++++|++++|++++|+|+||||||||+++|+|++.|+.|+|.+.+.++..
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 4677777888877889999999999999999999999999999999999999999999999877643
No 61
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.48 E-value=7.9e-16 Score=106.75 Aligned_cols=50 Identities=24% Similarity=0.269 Sum_probs=47.6
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
+++++++|.+++|++++|+||||||||||+++|+|+++|++|.|.+++.+
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence 47899999999999999999999999999999999999999999999864
No 62
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.46 E-value=4.7e-16 Score=102.10 Aligned_cols=47 Identities=21% Similarity=0.048 Sum_probs=42.2
Q ss_pred CCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67 (80)
Q Consensus 16 ~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~ 67 (80)
+.|+++.+|+++ ++|++++|+||||||||||+++|+|+ +|++|+|..
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~ 54 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR 54 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee
Confidence 356677899985 89999999999999999999999999 999999964
No 63
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.46 E-value=2.1e-15 Score=101.74 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=46.4
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC-CCceeeeecccc
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIR 73 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~-~G~i~~~~~~i~ 73 (80)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+++.++.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE 65 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce
Confidence 5899999 8999999999999999999999999999998 999999987753
No 64
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.44 E-value=1.7e-15 Score=108.32 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=47.2
Q ss_pred ccccceeeeeeccce--------------------eeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 21 KPAVNQISFGVGRGE--------------------CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 21 ~~vl~~isl~i~~g~--------------------~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
+.+++++||++++|+ +++|+||||||||||+++|+|+.+|++|+|.+++.++
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~ 107 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV 107 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC---
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeec
Confidence 468999999999999 9999999999999999999999999999999988654
No 65
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.44 E-value=3.1e-15 Score=108.48 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=54.6
Q ss_pred ccccccCCCCCccccceeee-eeccceeeeeecccCCCceeEeee--eeceeecCCCceeeeeccc
Q psy7220 10 DSHLETFPYDTKPAVNQISF-GVGRGECFGLLGLNGAGKTTTFKM--LTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 10 ~~~~~~~~~~~~~vl~~isl-~i~~g~~~~iiG~nGsGKsTll~~--l~gl~~~~~G~i~~~~~~i 72 (80)
+.+.+.....+.++|++++| .+++|++++|+||||||||||+++ ++|+.+|++|.+++++++.
T Consensus 14 ~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79 (525)
T ss_dssp CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred cccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 33444444566789999999 999999999999999999999999 7899999999999999763
No 66
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.43 E-value=4e-15 Score=102.32 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=47.4
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.+++++|++++|++++|+|||||||||+++.|+|+++|+.|+|.+.+.++.+
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 3467899999999999999999999999999999999999999999987643
No 67
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.43 E-value=5.7e-15 Score=109.55 Aligned_cols=52 Identities=33% Similarity=0.568 Sum_probs=44.9
Q ss_pred cccCCCCCc-cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCce
Q psy7220 13 LETFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65 (80)
Q Consensus 13 ~~~~~~~~~-~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i 65 (80)
++++.|+.. ..+++++ .+++||+++|+||||||||||+++|+|+++|+.|+|
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 456777654 4566666 689999999999999999999999999999999998
No 68
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.42 E-value=8.3e-16 Score=110.91 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=47.7
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCC-c-eeeee
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-N-AYVMN 69 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G-~-i~~~~ 69 (80)
++..++++.| +++||++++|++++|+||||||||||+|+|+|+.+|++| + |++++
T Consensus 119 i~~~nl~~~y------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 119 KYIYNLHFML------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp HHHHHHHHHH------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred hhhhhhhehh------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 3444455544 379999999999999999999999999999999999999 8 99987
No 69
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.42 E-value=5e-15 Score=103.61 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=44.9
Q ss_pred cceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 24 l~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
+++++|.+++|++++|+||||||||||+++|+|+++|++|.|.+++.
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~ 211 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc
Confidence 39999999999999999999999999999999999999999999874
No 70
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.41 E-value=2.6e-14 Score=106.15 Aligned_cols=46 Identities=26% Similarity=0.406 Sum_probs=33.6
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEe---------------------eeeeceeecCCCce
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTF---------------------KMLTGAIKPTSGNA 65 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll---------------------~~l~gl~~~~~G~i 65 (80)
...+|+++||+|++||+++|+||||||||||+ +++.++..|+.|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i 96 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAI 96 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEE
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccce
Confidence 45699999999999999999999999999998 88888888884433
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.39 E-value=1.6e-14 Score=91.31 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=38.9
Q ss_pred eeeeeeccceeeeeecccCCCceeEee------------eeeceeecCCCceeeee
Q psy7220 26 QISFGVGRGECFGLLGLNGAGKTTTFK------------MLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 26 ~isl~i~~g~~~~iiG~nGsGKsTll~------------~l~gl~~~~~G~i~~~~ 69 (80)
++||++++||+++|+||||||||||++ .+.|+..++.|++.+.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~ 56 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTG 56 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHH
Confidence 589999999999999999999999999 77788878777776655
No 72
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.38 E-value=1.5e-14 Score=95.73 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=26.0
Q ss_pred CCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 17 ~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
..+++++|+++||++++|++++|+||||||||||+++|++++
T Consensus 8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ---------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345678999999999999999999999999999999999965
No 73
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.37 E-value=5.2e-15 Score=101.29 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=52.9
Q ss_pred hccccccCCCCCccccceeeeee-------------------ccceeeeeecccCCCceeEeeeeeceee--cCCCceee
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGV-------------------GRGECFGLLGLNGAGKTTTFKMLTGAIK--PTSGNAYV 67 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i-------------------~~g~~~~iiG~nGsGKsTll~~l~gl~~--~~~G~i~~ 67 (80)
+++.++++.| .++++++++.+ ++|++++|+|+||||||||+++|+|++. |++|+|.+
T Consensus 38 i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 38 LSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp CCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred cchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 4556666666 47899999988 8999999999999999999999999988 99999999
Q ss_pred ---eecc
Q psy7220 68 ---MNHS 71 (80)
Q Consensus 68 ---~~~~ 71 (80)
++..
T Consensus 116 i~~d~~~ 122 (308)
T 1sq5_A 116 ITTDGFL 122 (308)
T ss_dssp EEGGGGB
T ss_pred EecCCcc
Confidence 7654
No 74
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.37 E-value=4.5e-14 Score=104.78 Aligned_cols=53 Identities=38% Similarity=0.666 Sum_probs=45.7
Q ss_pred ccccCCCCC-ccccceeeeeeccc-----eeeeeecccCCCceeEeeeeeceeecCCCc
Q psy7220 12 HLETFPYDT-KPAVNQISFGVGRG-----ECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64 (80)
Q Consensus 12 ~~~~~~~~~-~~vl~~isl~i~~g-----~~~~iiG~nGsGKsTll~~l~gl~~~~~G~ 64 (80)
....+.|.+ ..++++++|++++| |+++|+||||||||||+++|+|+.+|++|+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 334555654 46889999999999 679999999999999999999999999996
No 75
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.36 E-value=3.8e-14 Score=109.69 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=44.6
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
++...++++.|+++.+|+++||++++|++++|+||||||||||+++|+|
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3555678888998999999999999999999999999999999999984
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.35 E-value=5.1e-14 Score=99.08 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=46.3
Q ss_pred ceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 25 ~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+.++|++++|++++|+|||||||||+++.|+|+++|+.|+|.+.+.++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 46889999999999999999999999999999999999999999987643
No 77
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.34 E-value=7e-14 Score=102.41 Aligned_cols=51 Identities=31% Similarity=0.556 Sum_probs=40.8
Q ss_pred ccCCCCCccccceeeeee-ccceeeeeecccCCCceeEeeeeeceeecCCCce
Q psy7220 14 ETFPYDTKPAVNQISFGV-GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65 (80)
Q Consensus 14 ~~~~~~~~~vl~~isl~i-~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i 65 (80)
.+++|+.. .++-..+.+ ++||+++|+||||||||||+++|+|+++|+.|++
T Consensus 5 ~~~~~~~~-~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 5 VIHRYKVN-GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp EEEESSTT-SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred CceecCCC-ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 45566542 233344444 5999999999999999999999999999999998
No 78
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.31 E-value=1.8e-13 Score=89.41 Aligned_cols=38 Identities=24% Similarity=0.106 Sum_probs=22.9
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeee-cee
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT-GAI 58 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~-gl~ 58 (80)
.+..+++||++++|++++|+|||||||||++++|+ +++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35678999999999999999999999999999999 988
No 79
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.30 E-value=1.5e-13 Score=100.32 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=46.1
Q ss_pred cceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 24 l~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
-+++||++++|++++|+|+||||||||+++|+|+++++.|+|.+.+.++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 332 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence 46899999999999999999999999999999999999999999876653
No 80
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.29 E-value=9.9e-14 Score=99.13 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=52.9
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
+++.++.+.|+...+|+++ +. ++|++++|+||||||||||+++|.++++|++|+|.+.+.++
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred CCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 4555666666666788888 54 89999999999999999999999999999999999988775
No 81
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.28 E-value=1.4e-14 Score=96.45 Aligned_cols=59 Identities=22% Similarity=0.186 Sum_probs=41.9
Q ss_pred hhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
+..+++.++...++. ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++
T Consensus 7 ~~~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 7 FRSLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred eeEEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 344566665554432 566666 89999999999999999999999999999999999876
No 82
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.27 E-value=1.8e-13 Score=88.35 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=26.2
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
.+++++ .++++|++++|+||||||||||+++|+|+++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467777 6899999999999999999999999999985
No 83
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.26 E-value=3.4e-13 Score=85.88 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=36.9
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee-----ecCCCceee
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-----KPTSGNAYV 67 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~-----~~~~G~i~~ 67 (80)
++++++++.|+ .+++++ |.+++|..++|+|+||||||||++.|+|.. .|+.|.+.+
T Consensus 4 l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 4 LNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp -------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred hhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 56677788886 367877 899999999999999999999999999988 778887664
No 84
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.25 E-value=2.5e-13 Score=97.55 Aligned_cols=51 Identities=25% Similarity=0.335 Sum_probs=40.1
Q ss_pred hhhhccccccCCCCCccccceeeeeecccee--eeeecccCCCceeEeeeeecee
Q psy7220 6 LQTVDSHLETFPYDTKPAVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~--~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.+.++... ++.|++.+ ++++||++++|++ ++|+||||||||||+++|+|+.
T Consensus 14 ~~~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 14 CRTVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp ---CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CceEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 34555666 78888877 9999999999999 9999999999999999999984
No 85
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.23 E-value=1.2e-12 Score=97.12 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=31.5
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeee
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l 54 (80)
..+|+++||+|++||+++|+||||||||||++++
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence 4589999999999999999999999999999764
No 86
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.23 E-value=7.9e-14 Score=96.20 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=31.6
Q ss_pred eccceeeeeecccCCCceeEeeeeeceeecCCC
Q psy7220 31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63 (80)
Q Consensus 31 i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G 63 (80)
+++|++++|+||||||||||+++|+|+++|..|
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 899999999999999999999999999998876
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.20 E-value=6.9e-13 Score=89.38 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=45.9
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCC-ceeeeecc
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHS 71 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G-~i~~~~~~ 71 (80)
+.++|+++++.+++|++++|+||||||||||++.|++...|..| .+.+.+.+
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 34689999999999999999999999999999999999999878 77665443
No 88
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.19 E-value=5.5e-13 Score=97.21 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=47.2
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
..+++++++.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 457889999999999999999999999999999999999999999998754
No 89
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.19 E-value=1.4e-12 Score=84.74 Aligned_cols=42 Identities=29% Similarity=0.303 Sum_probs=36.1
Q ss_pred eeccceeeeeecccCCCceeEeeeee--ceeecCCCceeeeecc
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLT--GAIKPTSGNAYVMNHS 71 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~--gl~~~~~G~i~~~~~~ 71 (80)
.|++|++++|+||||||||||+++|+ ++.++..+.+++.+..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 68999999999999999999999999 6656677777777654
No 90
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.18 E-value=1.6e-12 Score=82.01 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=36.2
Q ss_pred eeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
.+++|++++|+|||||||||++++|++. +..|.|.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccch
Confidence 5789999999999999999999999997 6789999987654
No 91
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.17 E-value=1.7e-12 Score=82.59 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=26.5
Q ss_pred eeeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220 28 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 28 sl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
|+++++|++++|+|||||||||++++|+|+.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 56788999999999999999999999999863
No 92
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.17 E-value=1.9e-12 Score=89.12 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=39.3
Q ss_pred cceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+|++++|+|||||||||++++|+|+++|+.|+|.+.+.++.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR 142 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC
Confidence 689999999999999999999999999999999999988643
No 93
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.17 E-value=6.2e-13 Score=92.93 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=34.0
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+..++++++|++.+| +++|+|+||||||||+++|+++.
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 346899999999999 99999999999999999996554
No 94
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.17 E-value=1.3e-12 Score=89.43 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=22.3
Q ss_pred ccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeece-eecCCCceeeeecc
Q psy7220 12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA-IKPTSGNAYVMNHS 71 (80)
Q Consensus 12 ~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl-~~~~~G~i~~~~~~ 71 (80)
.++++.|+++.++++++|+| +|+|+||+|||||++.|.|. ..|++| +.++|.+
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~ 55 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEK 55 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC----------------
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcc
Confidence 35678899999999999998 89999999999999999997 778878 6555543
No 95
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.16 E-value=1.3e-12 Score=88.48 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=23.8
Q ss_pred eeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++|+||||||||||+++|+|+..|++|++.++|+++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~ 41 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIP 41 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccC
Confidence 47899999999999999999999999999999987653
No 96
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.15 E-value=1.6e-12 Score=85.65 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=36.3
Q ss_pred eeeeccceeeeeecccCCCceeEeeeeeceeec--CCCceeeeeccc
Q psy7220 28 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSI 72 (80)
Q Consensus 28 sl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~--~~G~i~~~~~~i 72 (80)
.-..++|++++|+||||||||||+++|+|+.+| ..|.+.+.+++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~ 56 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP 56 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCC
Confidence 345789999999999999999999999999986 678998887654
No 97
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.15 E-value=1.5e-12 Score=88.93 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=32.0
Q ss_pred eeeccceeeeeecccCCCceeEeeeeeceeecCCCceee---eecccc
Q psy7220 29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIR 73 (80)
Q Consensus 29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~---~~~~i~ 73 (80)
|++.+|++++|+||||||||||+++|+|+.+|+.|+|.+ +|+++.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t 211 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTT 211 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCce
Confidence 456789999999999999999999999999999999999 777654
No 98
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.13 E-value=3.4e-12 Score=88.69 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=41.1
Q ss_pred eeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
..++|++++|+|||||||||+++.|+|+++|+.|+|.+.+.++.+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR 169 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence 347899999999999999999999999999999999999988643
No 99
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.12 E-value=8.2e-13 Score=91.88 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=42.6
Q ss_pred ccceeeeeecc--ceeeeeecccCCCceeEeeeeeceeecCC----Cceeee
Q psy7220 23 AVNQISFGVGR--GECFGLLGLNGAGKTTTFKMLTGAIKPTS----GNAYVM 68 (80)
Q Consensus 23 vl~~isl~i~~--g~~~~iiG~nGsGKsTll~~l~gl~~~~~----G~i~~~ 68 (80)
+.+.+++++++ ++.++|+|+||||||||+++|+|+++|+. |+++++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF 208 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 45679999999 99999999999999999999999999999 998874
No 100
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.12 E-value=9.2e-13 Score=84.54 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=47.8
Q ss_pred cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCce--eeeecccc
Q psy7220 13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA--YVMNHSIR 73 (80)
Q Consensus 13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i--~~~~~~i~ 73 (80)
++.++++.....+..++..++|++++|+|+|||||||++++|++.+. ..|.+ ++++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 4 NIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp ------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 45566677778888999999999999999999999999999999887 67888 88876653
No 101
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.12 E-value=3.8e-12 Score=81.85 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=34.7
Q ss_pred eeccceeeeeecccCCCceeEeeeeeceeec-------CCCceeeeecc
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-------TSGNAYVMNHS 71 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-------~~G~i~~~~~~ 71 (80)
.+++|++++|+||||||||||+++|+|+..+ ..+.+++++.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 6899999999999999999999999996544 33367777654
No 102
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.11 E-value=2.8e-12 Score=82.98 Aligned_cols=37 Identities=30% Similarity=0.291 Sum_probs=34.2
Q ss_pred ceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
|++++|+||||||||||+++|+|+++ ++| +.++|.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence 68999999999999999999999998 889 99988665
No 103
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.09 E-value=3.4e-12 Score=82.39 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=36.4
Q ss_pred eccceeeeeecccCCCceeEeeeeeceeec---CCCceeeeeccc
Q psy7220 31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKP---TSGNAYVMNHSI 72 (80)
Q Consensus 31 i~~g~~~~iiG~nGsGKsTll~~l~gl~~~---~~G~i~~~~~~i 72 (80)
.++|++++|+||||||||||+++|+|+++| ..|.|.+++..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 578999999999999999999999999986 467788777554
No 104
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.09 E-value=1.6e-12 Score=96.09 Aligned_cols=62 Identities=19% Similarity=0.380 Sum_probs=37.1
Q ss_pred hhccccccCCCCC--cccccee----------eeeeccceeeeeecccCCCceeEeeeeeceeec-CCCceeeeeccc
Q psy7220 8 TVDSHLETFPYDT--KPAVNQI----------SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSI 72 (80)
Q Consensus 8 ~~~~~~~~~~~~~--~~vl~~i----------sl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-~~G~i~~~~~~i 72 (80)
.++..+++..|+. +++++.+ +++++. ++|+||||||||||+++|+|+..| ++|.|.++|.++
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL 84 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence 3556677777764 3455544 366665 999999999999999999999988 799999998875
No 105
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.08 E-value=9.8e-12 Score=95.13 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=33.5
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeee-eecee
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKM-LTGAI 58 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~-l~gl~ 58 (80)
.|+++||+|++|++++|+|+||||||||++. |+|++
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 6999999999999999999999999999997 77654
No 106
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.07 E-value=4.3e-12 Score=89.17 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=41.5
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC-CCceeeeeccc
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSI 72 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~-~G~i~~~~~~i 72 (80)
+|++++ +++|++++|+|||||||||++++|+++++|+ +|+|.+.+.++
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 175 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSC
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccH
Confidence 555554 7899999999999999999999999999987 89998776554
No 107
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.07 E-value=1.6e-11 Score=87.84 Aligned_cols=50 Identities=18% Similarity=0.058 Sum_probs=40.5
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCC
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G 63 (80)
.+.+.++++.|+++.++++++|+| +|+|+||+|||||+++|+|...+..|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred cEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 477788899999999999999998 89999999999999999998875433
No 108
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.07 E-value=2.3e-12 Score=86.62 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=35.5
Q ss_pred hhccccc-cCCC-CCccccceeeeeecc---ceeeeeecccCCCceeEeeeeece
Q psy7220 8 TVDSHLE-TFPY-DTKPAVNQISFGVGR---GECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 8 ~~~~~~~-~~~~-~~~~vl~~isl~i~~---g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
.+++.++ ++.| ++.++|+++||++++ |++++|+|++||||||+.++|++.
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4677788 8888 778899999999999 999999999999999999999874
No 109
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.04 E-value=1e-11 Score=80.06 Aligned_cols=28 Identities=32% Similarity=0.277 Sum_probs=23.8
Q ss_pred ccceeeeeecccCCCceeEeeeeeceee
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
++|++++|+||||||||||+++|.|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999999875
No 110
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.04 E-value=4.4e-12 Score=87.65 Aligned_cols=45 Identities=9% Similarity=0.109 Sum_probs=27.3
Q ss_pred eeeccceeeeeecccCCCceeEeeeeeceeecCCCceee---eecccc
Q psy7220 29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIR 73 (80)
Q Consensus 29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~---~~~~i~ 73 (80)
+++.+|++++|+|+||+|||||+++|.|+.+|..|+|.+ .|+.+.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt 215 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTT 215 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------C
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccc
Confidence 678899999999999999999999999999999999998 666543
No 111
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=99.03 E-value=1.7e-11 Score=76.98 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=34.3
Q ss_pred ceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCc
Q psy7220 25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64 (80)
Q Consensus 25 ~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~ 64 (80)
+++++++.+| +.+|+|||||||||++++|.+++.+..|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 6788999998 99999999999999999999887766554
No 112
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.02 E-value=1.9e-12 Score=89.09 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=55.2
Q ss_pred hhhccccccCCCCCccccceeeeeeccc-------eeeeeecccCCCceeEeeeeecee----ecCCCceeeeeccc
Q psy7220 7 QTVDSHLETFPYDTKPAVNQISFGVGRG-------ECFGLLGLNGAGKTTTFKMLTGAI----KPTSGNAYVMNHSI 72 (80)
Q Consensus 7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g-------~~~~iiG~nGsGKsTll~~l~gl~----~~~~G~i~~~~~~i 72 (80)
..++.+++...+++..+++++++.+++| +.+.|+||||+|||||++++++.. .+.+|.+..++.++
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l 93 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM 93 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHH
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHH
Confidence 3456667777888888999999999887 889999999999999999999987 77788877655443
No 113
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.01 E-value=1.4e-11 Score=84.24 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=33.9
Q ss_pred eeccceeeeeecccCCCceeEeeeeeceeecCCCceee---eecccc
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIR 73 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~---~~~~i~ 73 (80)
++.+|++++|+||||||||||+++|. +.+|+.|+|.+ +|+.+.
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t 206 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTT 206 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCce
Confidence 45679999999999999999999999 99999999999 887654
No 114
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.00 E-value=2e-11 Score=77.54 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=24.4
Q ss_pred ceeeeeecccCCCceeEeeeeeceee
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
|++++|+|||||||||++++|+++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999987
No 115
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.00 E-value=1.2e-11 Score=79.32 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=44.5
Q ss_pred ccccceeee-eeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 21 KPAVNQISF-GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 21 ~~vl~~isl-~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
.+.|+++.. .+++|++++|+||||||||||++.+++...+..|.+.+.+.+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 457788887 899999999999999999999999998888888888887654
No 116
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.99 E-value=3.1e-11 Score=93.77 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=40.1
Q ss_pred hcccc-----ccCCC-CCccccceeeeeecc-------ceeeeeecccCCCceeEeeeeeceeec
Q psy7220 9 VDSHL-----ETFPY-DTKPAVNQISFGVGR-------GECFGLLGLNGAGKTTTFKMLTGAIKP 60 (80)
Q Consensus 9 ~~~~~-----~~~~~-~~~~vl~~isl~i~~-------g~~~~iiG~nGsGKsTll~~l~gl~~~ 60 (80)
+++.+ +.+.| ++..++++++|++++ |++++|+||||||||||+|++ |++.+
T Consensus 751 l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~ 814 (1022)
T 2o8b_B 751 LELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV 814 (1022)
T ss_dssp EEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred EEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH
Confidence 45555 66667 667899999999987 899999999999999999999 88754
No 117
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.96 E-value=5.4e-11 Score=90.26 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=39.2
Q ss_pred CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-cCCCcee
Q psy7220 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAY 66 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-~~~G~i~ 66 (80)
++..++++++|+ |++++|+||||||||||+|+++|+.. ++.|.+.
T Consensus 564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v 609 (765)
T 1ewq_A 564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV 609 (765)
T ss_dssp TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB
T ss_pred CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee
Confidence 456789999999 99999999999999999999999874 6777653
No 118
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.92 E-value=1.9e-11 Score=81.38 Aligned_cols=41 Identities=29% Similarity=0.259 Sum_probs=37.6
Q ss_pred ccceeeeeecccCCCceeEeeeee---ceeecCCCcee--------eeeccc
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAY--------VMNHSI 72 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~---gl~~~~~G~i~--------~~~~~i 72 (80)
++|++++|+|||||||||++++|+ |+..+++|.++ .+|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCc
Confidence 789999999999999999999999 99999999998 666655
No 119
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.92 E-value=2.1e-11 Score=82.33 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=46.1
Q ss_pred CCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 16 ~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
..+....+++++++.+++| ++|+||||||||||+++|++...+ +.+.+++.++.
T Consensus 28 ~~~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~ 81 (274)
T 2x8a_A 28 APVRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELL 81 (274)
T ss_dssp HHHHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTC
T ss_pred HHhhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHH
Confidence 3456677999999999999 899999999999999999998765 68888887653
No 120
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.90 E-value=6.3e-11 Score=80.93 Aligned_cols=62 Identities=18% Similarity=0.118 Sum_probs=51.2
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
+..+++++.|+... ++++|+ +|++++++|+||+||||++..|++++.+..|++.+.+.+...
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 44455666665543 778888 899999999999999999999999999989999998877654
No 121
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.90 E-value=1.1e-10 Score=74.81 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=33.3
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.++-+..++.++|++++|+|+|||||||++++|++.+ |.+.+++.++.
T Consensus 17 ~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~ 64 (200)
T 4eun_A 17 NLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFH 64 (200)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGS
T ss_pred hhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccc
Confidence 3444445667899999999999999999999999876 88888887653
No 122
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.89 E-value=6e-11 Score=83.20 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=35.3
Q ss_pred eeccceeeeeecccCCCceeEeeeeeceeecC-CCceeeeecc
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHS 71 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~-~G~i~~~~~~ 71 (80)
...++++++|+||||||||||+++|+|+++|+ .|.|...+.+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~ 161 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDP 161 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCc
Confidence 67888999999999999999999999999887 5666554443
No 123
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.88 E-value=1.8e-10 Score=89.00 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=33.0
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeee
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l 54 (80)
...++++++|++++|++++|+|||||||||++|++
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 45688999999999999999999999999999999
No 124
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.88 E-value=1e-10 Score=73.95 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=31.9
Q ss_pred ceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
|++++|+|||||||||++++|++ +..|.+.+++.++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~ 38 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIIN 38 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchh
Confidence 68899999999999999999986 66788999876543
No 125
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.87 E-value=1.5e-11 Score=85.43 Aligned_cols=59 Identities=22% Similarity=0.347 Sum_probs=47.7
Q ss_pred ccccCCCCCccccceeeeeeccce------eeeeecccCCCceeEeeeeeceee--cCCCceeeeec
Q psy7220 12 HLETFPYDTKPAVNQISFGVGRGE------CFGLLGLNGAGKTTTFKMLTGAIK--PTSGNAYVMNH 70 (80)
Q Consensus 12 ~~~~~~~~~~~vl~~isl~i~~g~------~~~iiG~nGsGKsTll~~l~gl~~--~~~G~i~~~~~ 70 (80)
+.+++.|++...+++++..+..+. ++||+||||||||||+++|.+++. |+.|.+.+-..
T Consensus 64 rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~ 130 (321)
T 3tqc_A 64 RLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITT 130 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEG
T ss_pred HHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEee
Confidence 344566778888999999888877 999999999999999999999987 45677555443
No 126
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.87 E-value=8.5e-11 Score=74.63 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=28.8
Q ss_pred eeeccceeeeeecccCCCceeEeeeeeceeecCCC
Q psy7220 29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63 (80)
Q Consensus 29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G 63 (80)
+++++|++++|+|||||||||++++|+++..|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 36789999999999999999999999998855544
No 127
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.87 E-value=2.6e-10 Score=74.69 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=37.6
Q ss_pred eeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+-+...++|++++|.|+|||||||++++|+++ .|++.+.+++..
T Consensus 12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~ 55 (230)
T 2vp4_A 12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVE 55 (230)
T ss_dssp CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHH
T ss_pred CccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHH
Confidence 34456689999999999999999999999997 688999887653
No 128
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.86 E-value=2.4e-10 Score=78.45 Aligned_cols=41 Identities=29% Similarity=0.291 Sum_probs=36.4
Q ss_pred ceeeeeecccCCCceeEeeeeecee--------ecCCCceeeeeccccc
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAI--------KPTSGNAYVMNHSIRD 74 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~--------~~~~G~i~~~~~~i~~ 74 (80)
=++++|+|+||||||||++.|.|+. .|+.|+|.++|.++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~ 52 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGD 52 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECT
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhC
Confidence 3688999999999999999999986 7899999999987653
No 129
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.86 E-value=1.2e-10 Score=89.92 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=34.9
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
+..++++++|++++|++++|+||||||||||+|+++++
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 46789999999999999999999999999999998753
No 130
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.86 E-value=1.1e-10 Score=74.85 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=26.2
Q ss_pred eccceeeeeecccCCCceeEeeeeeceeec
Q psy7220 31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60 (80)
Q Consensus 31 i~~g~~~~iiG~nGsGKsTll~~l~gl~~~ 60 (80)
.++|++++|+||||||||||+++|+|++.|
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999999999999999998764
No 131
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.86 E-value=1.5e-11 Score=81.00 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=46.3
Q ss_pred ccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 12 ~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
+++...|+...+++++++++++| +.|+||||+|||||++++++... .|.+.+++.++
T Consensus 29 ~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~ 85 (254)
T 1ixz_A 29 KEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 85 (254)
T ss_dssp HHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred HHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHH
Confidence 33444455667899999999999 88999999999999999999764 67888877554
No 132
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.86 E-value=2.2e-10 Score=87.28 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=35.8
Q ss_pred CCccccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+++.++++++|+ ++|++++|+||||||||||+|+++|+.
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 456789999999 999999999999999999999999875
No 133
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.86 E-value=3.1e-11 Score=79.52 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=34.5
Q ss_pred cceeeeeecccCCCceeEeeeee---ceeecCCCceeeeec
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAYVMNH 70 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~---gl~~~~~G~i~~~~~ 70 (80)
++++++|+|||||||||++++|+ |+..++.|++.+++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~ 66 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENI 66 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHH
Confidence 47899999999999999999999 999999999888753
No 134
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.85 E-value=1.9e-10 Score=80.99 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=36.2
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeeceee-cCCCceeee
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAYVM 68 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-~~~G~i~~~ 68 (80)
.-++++++. .+|++++|+||||+|||||+++|+|+.. |..|+|.+.
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~ 250 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNV 250 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCcccc
Confidence 346677765 4799999999999999999999999999 999999886
No 135
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.85 E-value=1.8e-11 Score=81.94 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=45.9
Q ss_pred cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
++.+.|+...+++++++++++| +.|+||||+|||||+++|++... .|.+.+++.++
T Consensus 54 ~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~ 109 (278)
T 1iy2_A 54 EIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 109 (278)
T ss_dssp HHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred HHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHH
Confidence 3344455667899999999999 88999999999999999999764 68888877554
No 136
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.84 E-value=3.5e-10 Score=87.64 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=31.8
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~ 55 (80)
..|+++||+|++|++++|+|+||||||||++++.
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4699999999999999999999999999999864
No 137
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.84 E-value=3.8e-10 Score=87.08 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=29.2
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEe
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTF 51 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll 51 (80)
...|+++||+|++|++++|+|+||||||||+
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 3579999999999999999999999999997
No 138
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.83 E-value=3.5e-11 Score=76.82 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=31.3
Q ss_pred eeeeeecccCCCceeEeeeeeceeecC---CCceeeeeccc
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSI 72 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl~~~~---~G~i~~~~~~i 72 (80)
++++|+|+||||||||++.|.++++|+ .|.|.+++.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCccc
Confidence 578999999999999999999999998 89999998774
No 139
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.81 E-value=5.4e-11 Score=82.37 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=52.4
Q ss_pred hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
.++.....+.|+...+++++++.+.++.+++|+|++|+|||||++.|++.+.+..+++.+-+.+
T Consensus 30 ~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 30 LVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp HHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 4455555566666789999999999999999999999999999999999887777777665443
No 140
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=2.7e-10 Score=72.86 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=24.1
Q ss_pred CCccccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+...+++++||+++++.+++|+|++||||||+.+.|+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3457999999999999999999999999999999998644
No 141
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.80 E-value=3.9e-10 Score=77.99 Aligned_cols=49 Identities=24% Similarity=0.330 Sum_probs=45.2
Q ss_pred ceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 25 ~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
++++|+++++++++|+|+||+||||++..|++.+.+..|++.+.+.++.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 6899999999999999999999999999999999998999999887764
No 142
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.80 E-value=2.9e-10 Score=71.93 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=28.8
Q ss_pred cceeeeeecccCCCceeEeeeeeceeec-CCCceee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYV 67 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~-~~G~i~~ 67 (80)
+|++++|+||||||||||+++|.+..++ ..|.+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999998753 3455543
No 143
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.79 E-value=4.4e-10 Score=72.20 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=37.7
Q ss_pred eeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
..+++++++|+|+|||||||++++|++++++..|.+.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3578999999999999999999999999988888888876553
No 144
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.79 E-value=2.5e-10 Score=79.55 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=42.7
Q ss_pred ccccee-eeeeccceeeeeecccCCCceeEeeeeecee--ecCC----Cc-eeeeeccc
Q psy7220 22 PAVNQI-SFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTS----GN-AYVMNHSI 72 (80)
Q Consensus 22 ~vl~~i-sl~i~~g~~~~iiG~nGsGKsTll~~l~gl~--~~~~----G~-i~~~~~~i 72 (80)
+.|+.+ .+.+++|+++.|+||||||||||++.+++.. +|+. |. +++++.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 455555 6899999999999999999999999999987 6665 57 88887654
No 145
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.79 E-value=1.9e-10 Score=72.25 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=32.6
Q ss_pred eeeeccceeeeeecccCCCceeEeeeeeceeecCCC
Q psy7220 28 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63 (80)
Q Consensus 28 sl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G 63 (80)
+|.+++|+.++|+||||+|||||++++++...|..|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 566788999999999999999999999999887777
No 146
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.78 E-value=4.4e-10 Score=79.50 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=39.0
Q ss_pred ehhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC
Q psy7220 5 SLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 62 (80)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~ 62 (80)
.+..++++++ ..|++.. .+++.++++++|+|||||||||++++|+++..+.+
T Consensus 3 ~i~~l~~~~~-~~~~~~~-----~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 3 RLVGLELSNF-KSYRGVT-----KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp CEEEEEEESC-SSCCSEE-----EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred eeEEEEEeCE-EEECCce-----eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 4456677776 5665432 24567899999999999999999999999887654
No 147
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.77 E-value=9.2e-10 Score=77.33 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=31.6
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
..++++++++++| +++|+|||||||||++++|.+
T Consensus 15 ~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 15 RNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 4578999999999 999999999999999999987
No 148
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.77 E-value=3.2e-10 Score=72.46 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=25.8
Q ss_pred eeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
+++|+||||||||||+++|+|++. +.++|.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~ 32 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFW 32 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEE
Confidence 578999999999999999999984 5555543
No 149
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.74 E-value=7.5e-10 Score=71.63 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=35.8
Q ss_pred eeccceeeeeecccCCCceeEeeeeec--eeec-----CCCceeeeecc
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTG--AIKP-----TSGNAYVMNHS 71 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~g--l~~~-----~~G~i~~~~~~ 71 (80)
.+++|++++|+||||||||||++.+++ +.++ ..|.+++++..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 488999999999999999999999998 4554 56788888765
No 150
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.74 E-value=8.3e-10 Score=68.64 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=33.7
Q ss_pred cceeeeeecccCCCceeEeeeeeceeecCCC--ceeeeeccc
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHSI 72 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G--~i~~~~~~i 72 (80)
+|+.++|+||||+|||||++++++...+ .| .+++++.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh
Confidence 8999999999999999999999998876 57 677766544
No 151
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.73 E-value=1.2e-09 Score=84.87 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=31.8
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~ 55 (80)
.+|+++||+|++|++++|+|+||||||||+++|.
T Consensus 656 ~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 656 HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3699999999999999999999999999999863
No 152
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.72 E-value=7.4e-10 Score=79.12 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=32.9
Q ss_pred cceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 24 l~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
-++++|+++.++.++|+|+||||||||+++|++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 47999999999999999999999999999999983
No 153
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.72 E-value=1.3e-09 Score=74.66 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=27.6
Q ss_pred eeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
++++++.+| +.+|+|+|||||||++++|..+
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 567888888 9999999999999999999844
No 154
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.71 E-value=1.1e-09 Score=75.51 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=42.2
Q ss_pred eeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+++..+++++++|+|+|||||||++..|++.+.+..|++.+.+.+..
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 456667899999999999999999999999999998889999876654
No 155
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.66 E-value=8.1e-10 Score=81.30 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=37.9
Q ss_pred eeccceeeeeecccCCCceeEeeeeeceeecCCC-cee-eeeccc
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAY-VMNHSI 72 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G-~i~-~~~~~i 72 (80)
.+++|++++|+|+|||||||++++|++.+.|+.| ++. +++.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 6789999999999999999999999999999886 675 776554
No 156
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.64 E-value=2.5e-09 Score=66.63 Aligned_cols=37 Identities=16% Similarity=0.348 Sum_probs=31.5
Q ss_pred ccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 568999999999999999999998864 7777776554
No 157
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.63 E-value=7.5e-10 Score=81.50 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=49.3
Q ss_pred CCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC-Cceeeeeccc
Q psy7220 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVMNHSI 72 (80)
Q Consensus 16 ~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~-G~i~~~~~~i 72 (80)
..++...+++.+++.+.+|+.+.|+||||+|||||+++|+++.++.. |.+.+.+...
T Consensus 42 ~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred eEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 34677889999999999999999999999999999999999998876 6676665543
No 158
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.62 E-value=1.9e-09 Score=78.12 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=36.5
Q ss_pred eeeeccceeeeeecccCCCceeEeeeeeceeecCCCc--eeeeecc
Q psy7220 28 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN--AYVMNHS 71 (80)
Q Consensus 28 sl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~--i~~~~~~ 71 (80)
+..+++|++++|+|+||||||||++.+++..++. |+ +++..++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee 319 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEE 319 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSS
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeC
Confidence 4489999999999999999999999999998875 65 5665544
No 159
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.61 E-value=1e-09 Score=77.55 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=38.3
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~ 67 (80)
..+++++++.+++|++++|+||||||||||+++|++.. .|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 36889999999999999999999999999999999853 565554
No 160
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.60 E-value=2.5e-09 Score=69.01 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=26.8
Q ss_pred ccceeeeeecccCCCceeEeeeeeceeec
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAIKP 60 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~ 60 (80)
++|++++|+|||||||||+++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999988765
No 161
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.58 E-value=3.7e-09 Score=75.12 Aligned_cols=41 Identities=27% Similarity=0.467 Sum_probs=36.1
Q ss_pred eeccceeeeeecccCCCceeEeeeeec------------eeecCCCceeeeec
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTG------------AIKPTSGNAYVMNH 70 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~g------------l~~~~~G~i~~~~~ 70 (80)
.+++|..++|+|+||+|||||+++|+| ...|+.|.+.+.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence 567899999999999999999999999 56688898888763
No 162
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.56 E-value=2.5e-09 Score=67.70 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=30.5
Q ss_pred eeeeeecccCCCceeEeeeeeceeec-----------CCCceeeeeccc
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGAIKP-----------TSGNAYVMNHSI 72 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl~~~-----------~~G~i~~~~~~i 72 (80)
-.++|+|+||||||||++.+++...+ ..|++.++|+++
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 36899999999999999999987654 457777776543
No 163
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.56 E-value=4.2e-09 Score=68.79 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=26.2
Q ss_pred eeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220 29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
+...+|++++|+||||||||||++.|.+.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445899999999999999999999998765
No 164
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.54 E-value=7.6e-09 Score=72.31 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=29.8
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
..++++++++++| +++|+|||||||||++.+|+..
T Consensus 12 ~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 12 LGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp TTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred cCccceEEecCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 3456788999999 7889999999999999998733
No 165
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.51 E-value=3.9e-09 Score=67.33 Aligned_cols=47 Identities=21% Similarity=0.141 Sum_probs=36.3
Q ss_pred cccceeee-eeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220 22 PAVNQISF-GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70 (80)
Q Consensus 22 ~vl~~isl-~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~ 70 (80)
+.|+.+.. .+++|++++|+|+||||||||++.+++ .+..+.++++..
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~ 54 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE 54 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC
Confidence 45666654 689999999999999999999999998 444445555543
No 166
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.47 E-value=1e-08 Score=73.52 Aligned_cols=58 Identities=19% Similarity=0.151 Sum_probs=47.4
Q ss_pred cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220 13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74 (80)
Q Consensus 13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~ 74 (80)
.+...|+... ++++|+ ++++++++|++|+||||++..|++.+.+..+++.+.+.++.+
T Consensus 81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 4455565443 678887 899999999999999999999999999888999988776543
No 167
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.46 E-value=1.3e-08 Score=69.53 Aligned_cols=41 Identities=24% Similarity=0.248 Sum_probs=36.0
Q ss_pred ccceeeeeecccCCCceeEeeeeeceeecCCC-ceeeeeccc
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHSI 72 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G-~i~~~~~~i 72 (80)
++|++++++|+||+||||++..|++.+.++.| ++.+-+.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 57899999999999999999999999988788 787766654
No 168
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.46 E-value=1.1e-08 Score=70.03 Aligned_cols=58 Identities=17% Similarity=0.069 Sum_probs=46.4
Q ss_pred cccCCCCCccccce-eeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 13 LETFPYDTKPAVNQ-ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 13 ~~~~~~~~~~vl~~-isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
.+...|+... ++ ++++.+ +.+++++|++|+||||++..|++.+.+..+++.+.+.+..
T Consensus 79 ~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 79 ELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred HHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3444455433 56 788876 9999999999999999999999999888889998777654
No 169
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.43 E-value=2.1e-08 Score=71.28 Aligned_cols=42 Identities=26% Similarity=0.330 Sum_probs=34.2
Q ss_pred eeccceeeeeecccCCCceeEeee--eeceeecCCC-----ceeeeecc
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKM--LTGAIKPTSG-----NAYVMNHS 71 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~--l~gl~~~~~G-----~i~~~~~~ 71 (80)
-|++|+++.|+||||||||||++. +.++.+++.| .+++++..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 688999999999999999999994 4566666444 78887765
No 170
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.39 E-value=2.7e-08 Score=69.17 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=35.6
Q ss_pred ccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~ 73 (80)
+++.+++|+|++|||||||++.|.+...+..|++.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 357899999999999999999999998888888887766543
No 171
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.39 E-value=1.2e-08 Score=64.54 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=28.3
Q ss_pred eeeeecccCCCceeEeeeeeceee-----cC------CCceeeeeccc
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAIK-----PT------SGNAYVMNHSI 72 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~~-----~~------~G~i~~~~~~i 72 (80)
.++|+|+||+|||||++.++|... |+ .|.+.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 578999999999999999998742 32 45677766543
No 172
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.38 E-value=4.6e-09 Score=67.58 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=29.4
Q ss_pred ceeeeeecccCCCceeEeeeeecee---ecCCCceee
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAI---KPTSGNAYV 67 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~---~~~~G~i~~ 67 (80)
+.+++|+|++||||||+.++|++.+ .++.|+++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 4679999999999999999998765 677888876
No 173
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.38 E-value=1.5e-08 Score=63.49 Aligned_cols=40 Identities=35% Similarity=0.313 Sum_probs=31.3
Q ss_pred ccceeeeeecccCCCceeEeeeeeceeecCCC--ceeeeeccc
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHSI 72 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G--~i~~~~~~i 72 (80)
++|++++|+|++||||||+.++|++.+++ .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 46899999999999999999999987765 45 455565433
No 174
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.38 E-value=5e-08 Score=67.49 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=32.7
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeec--eeecCCCcee
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAY 66 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g--l~~~~~G~i~ 66 (80)
..+|++++++++ .++|+|++|||||||++.|.| ++++..|.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 468999999999 899999999999999999999 5566666553
No 175
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.37 E-value=1.8e-08 Score=72.89 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=30.8
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
..++++++++.+| +.+|+|+|||||||++.+|..+
T Consensus 49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 3667899999999 9999999999999999998544
No 176
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.36 E-value=3e-08 Score=66.29 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=27.4
Q ss_pred eeccceeeeeecccCCCceeEeeeeeceee
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
.+++|++++|+||||||||||++.+++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999999998654
No 177
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.36 E-value=2.3e-09 Score=78.27 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=41.8
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
...++.++++++ +|+.+.|+||||+|||||+++|++...+..+.+.+.+
T Consensus 95 ~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 95 EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 345678888888 8999999999999999999999999877777777665
No 178
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.35 E-value=1.9e-08 Score=62.27 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.7
Q ss_pred cceeeeeecccCCCceeEeeeeeceee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
.+.+++|+|++||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999998653
No 179
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.33 E-value=1.3e-08 Score=74.07 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=42.3
Q ss_pred CCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 18 ~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
+.+..+++++++.+++| +.|+||+|+|||||++++++... .+.+++++.++
T Consensus 50 l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~ 100 (499)
T 2dhr_A 50 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 100 (499)
T ss_dssp HHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred hhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence 44556888999999999 88999999999999999998753 57777877654
No 180
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=8e-09 Score=70.67 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=44.7
Q ss_pred ccccCCCCCccccceeeeeecccee--eeeecccCCCceeEeeeeeceeecCCCcee
Q psy7220 12 HLETFPYDTKPAVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66 (80)
Q Consensus 12 ~~~~~~~~~~~vl~~isl~i~~g~~--~~iiG~nGsGKsTll~~l~gl~~~~~G~i~ 66 (80)
..+...++...+++.++..++.|++ +.|.||+|+||||+++++++.+.+..+...
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~ 78 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNM 78 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccce
Confidence 3444456777899999999999998 999999999999999999998765544433
No 181
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.31 E-value=6.4e-08 Score=63.68 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=31.4
Q ss_pred cccceeeeeec---cceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220 22 PAVNQISFGVG---RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68 (80)
Q Consensus 22 ~vl~~isl~i~---~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~ 68 (80)
.-|.+.++.+. +|.+++|.|++||||||+++.|...+.+ .+.+...
T Consensus 11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 45667777776 9999999999999999999999988776 5555543
No 182
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.30 E-value=4.5e-08 Score=62.50 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=26.9
Q ss_pred eeeccceeeeeecccCCCceeEeeeeecee
Q psy7220 29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
-.++++.+++|+|++||||||+++.|++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357789999999999999999999998864
No 183
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.29 E-value=6.9e-08 Score=59.87 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=22.5
Q ss_pred eeeeeccceeeeeecccCCCceeEeeeee
Q psy7220 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 27 isl~i~~g~~~~iiG~nGsGKsTll~~l~ 55 (80)
.++++.+| +.+|+|||||||||++.+|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34445554 88999999999999999886
No 184
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=5.6e-08 Score=66.12 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=26.8
Q ss_pred eeeeecccCCCceeEeeeeec-eeecCCCceeeeecc
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG-AIKPTSGNAYVMNHS 71 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g-l~~~~~G~i~~~~~~ 71 (80)
.+.|.||||+||||+++++++ +..|+.|.+.+++.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 388999999999999999999 788888988877644
No 185
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.26 E-value=1.9e-08 Score=64.74 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=36.3
Q ss_pred eeeccceeeeeecccCCCceeEeeeeeceeecCCC--ceeeeecc
Q psy7220 29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHS 71 (80)
Q Consensus 29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G--~i~~~~~~ 71 (80)
+.+++|.++.|+|++||||||+.+.|...+.|..| .+.+++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 55788999999999999999999999998876677 66676543
No 186
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.26 E-value=4.8e-08 Score=63.05 Aligned_cols=48 Identities=29% Similarity=0.334 Sum_probs=33.0
Q ss_pred ccccee-eeeeccceeeeeecccCCCceeEee-eeeceeecCCCceeeee
Q psy7220 22 PAVNQI-SFGVGRGECFGLLGLNGAGKTTTFK-MLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 22 ~vl~~i-sl~i~~g~~~~iiG~nGsGKsTll~-~l~gl~~~~~G~i~~~~ 69 (80)
+.|+.+ .--+++|+++.|+|+||+|||||+. ++....+...+.+++..
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 345554 5578999999999999999999954 44444444334444443
No 187
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.18 E-value=7.1e-08 Score=69.22 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=43.8
Q ss_pred hhccccccCCCCC-ccccc--------------eeeeeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220 8 TVDSHLETFPYDT-KPAVN--------------QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 8 ~~~~~~~~~~~~~-~~vl~--------------~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
.+...++++.|.. +..++ |+.+.+.+|+.++|+|++|+|||||++.|++...
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 4556677777754 66888 8999999999999999999999999999888653
No 188
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.12 E-value=6.3e-08 Score=67.55 Aligned_cols=46 Identities=20% Similarity=0.095 Sum_probs=34.4
Q ss_pred hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec
Q psy7220 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60 (80)
Q Consensus 9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~ 60 (80)
+.+.++...++++.+.++++|+| +|+|++|+|||||++.|.+...+
T Consensus 18 v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 18 VGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp ---CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-
T ss_pred EEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC
Confidence 44455566667777888888876 89999999999999998775443
No 189
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.11 E-value=2.1e-07 Score=58.44 Aligned_cols=38 Identities=26% Similarity=0.276 Sum_probs=31.8
Q ss_pred eeeccceeeeeecccCCCceeEeeeeeceeecCCCcee
Q psy7220 29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66 (80)
Q Consensus 29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~ 66 (80)
+...+|.++.|+|++||||||+.+.|+..+.+..+.+.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 44568899999999999999999999988776666654
No 190
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.04 E-value=5.1e-07 Score=62.17 Aligned_cols=29 Identities=21% Similarity=0.380 Sum_probs=22.6
Q ss_pred eeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l~ 55 (80)
+..+++.+| +.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CeEEcCCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344555554 78899999999999999763
No 191
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.03 E-value=5.6e-07 Score=58.12 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=22.3
Q ss_pred eeeeeccceeeeeecccCCCceeEeeeee
Q psy7220 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 27 isl~i~~g~~~~iiG~nGsGKsTll~~l~ 55 (80)
.++.+.+ .+.+|+|||||||||++.+|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 3444555 488899999999999999875
No 192
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.02 E-value=2.6e-07 Score=63.01 Aligned_cols=30 Identities=17% Similarity=0.056 Sum_probs=27.0
Q ss_pred eccceeeeeecccCCCceeEeeeeeceeec
Q psy7220 31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60 (80)
Q Consensus 31 i~~g~~~~iiG~nGsGKsTll~~l~gl~~~ 60 (80)
-.++.+++|+|++|||||||.+.|.+++.+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 357889999999999999999999998875
No 193
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.02 E-value=4.1e-07 Score=57.37 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=25.6
Q ss_pred eeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
++|+..+++..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999988653
No 194
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.01 E-value=3.9e-07 Score=57.97 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.9
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
+++|+|++||||||+.++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 195
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.01 E-value=2.2e-07 Score=58.87 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=30.6
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
..+++++++..++.. ++++|++|+|||||++.+.+
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 468899999988875 67999999999999998876
No 196
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.98 E-value=5.4e-07 Score=63.26 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=34.3
Q ss_pred eeccceeeeeecccCCCceeEeeeeeceeecCCCce-eeeec
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA-YVMNH 70 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i-~~~~~ 70 (80)
-+++|+++.|.||+|||||||+..++....+..|.+ +++..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 478999999999999999999999998877777766 44443
No 197
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.96 E-value=3.5e-07 Score=57.50 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=19.7
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
.+++++++..++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4778899887776 578999999999999998876
No 198
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.96 E-value=1.6e-06 Score=67.11 Aligned_cols=29 Identities=17% Similarity=0.410 Sum_probs=27.4
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEe
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTF 51 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll 51 (80)
=|+|||++||++++++|.|+||||||||.
T Consensus 13 NLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 13 NLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred ccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 47899999999999999999999999985
No 199
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.95 E-value=5.2e-07 Score=64.03 Aligned_cols=36 Identities=17% Similarity=0.399 Sum_probs=29.1
Q ss_pred eeeeecccCCCceeEeeeeeceee------------cCCCceeeeecc
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAIK------------PTSGNAYVMNHS 71 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~~------------~~~G~i~~~~~~ 71 (80)
.++|+|++|+|||||++.|.|... +..|.+.++|++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 689999999999999999988743 456777777754
No 200
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.94 E-value=5.5e-07 Score=57.07 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=19.7
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999987
No 201
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.93 E-value=1.1e-06 Score=61.15 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=30.9
Q ss_pred eehhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220 4 TSLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~ 55 (80)
..+..+++++.. .+++..+++.+| +.+|+|+|||||||++.+|.
T Consensus 3 M~l~~L~l~nFr-------~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNNFK-------SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEEET-------TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEccc-------cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344555555522 234566666664 78899999999999998875
No 202
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.92 E-value=7.5e-07 Score=56.90 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=24.8
Q ss_pred eeccceeeeeecccCCCceeEeeeeecee
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
...+|.+++|+||+||||||+.+.|...+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35688999999999999999999987654
No 203
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.91 E-value=7.3e-07 Score=62.46 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=28.2
Q ss_pred ccee-eeeecccCCCceeEeeeeeceee-----------cCCCceeeeecc
Q psy7220 33 RGEC-FGLLGLNGAGKTTTFKMLTGAIK-----------PTSGNAYVMNHS 71 (80)
Q Consensus 33 ~g~~-~~iiG~nGsGKsTll~~l~gl~~-----------~~~G~i~~~~~~ 71 (80)
.+-. ++|+|++|+|||||++.|++... +..+.+.++|.+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence 3444 88999999999999999998765 445677776643
No 204
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.90 E-value=2.2e-06 Score=65.86 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=28.0
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEe
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTF 51 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll 51 (80)
.=|+||+++||.+.+++|.|.||||||||.
T Consensus 24 hNLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 24 HNLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp TTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred cCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 358999999999999999999999999986
No 205
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.90 E-value=8.1e-07 Score=66.34 Aligned_cols=38 Identities=26% Similarity=0.255 Sum_probs=29.8
Q ss_pred eeeeccceeeeeecccCCCceeEeeeeeceeec--CCCce
Q psy7220 28 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNA 65 (80)
Q Consensus 28 sl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~--~~G~i 65 (80)
++.++++..++|+|++|+|||||++.|.+...+ ..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 456789999999999999999999999866543 45666
No 206
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.89 E-value=7e-07 Score=63.58 Aligned_cols=40 Identities=33% Similarity=0.546 Sum_probs=31.4
Q ss_pred eeccceeeeeecccCCCceeEeeeeece-----------eecCCCceeeee
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGA-----------IKPTSGNAYVMN 69 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl-----------~~~~~G~i~~~~ 69 (80)
.+..+..++|+|++|+|||||++.|++. ..|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4567888999999999999999999987 455666666654
No 207
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.88 E-value=9.7e-07 Score=54.74 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=22.8
Q ss_pred ccceeeeeecccCCCceeEeeeeecee
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+++..++|+|++|+|||||++.+.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999998754
No 208
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.86 E-value=1.1e-06 Score=55.74 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.8
Q ss_pred ceeeeeecccCCCceeEeeeeecee
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
..+++|+|++||||||+.+.|+..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998754
No 209
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.85 E-value=3.4e-07 Score=64.56 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=33.5
Q ss_pred cccceeeeeecccee--eeeecccCCCceeEeeeeeceee
Q psy7220 22 PAVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 22 ~vl~~isl~i~~g~~--~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
.+++.+++.+++|+. +.|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 477888899999998 99999999999999999987653
No 210
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.84 E-value=1.3e-06 Score=59.34 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=23.4
Q ss_pred ccceeeeeecccCCCceeEeeeeecee
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++.+++|+|++|+|||||++.|.|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 345589999999999999999998863
No 211
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.82 E-value=4.5e-07 Score=60.55 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=39.6
Q ss_pred CCCCccccceeeeeeccc-----------eeeeeecccCCCceeEeeeeeceeecCCCcee
Q psy7220 17 PYDTKPAVNQISFGVGRG-----------ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66 (80)
Q Consensus 17 ~~~~~~vl~~isl~i~~g-----------~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~ 66 (80)
.++...+++.+...+..+ ..+.|+||+|+||||++++++....+..+.+.
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence 346777878787777765 57889999999999999999988766555443
No 212
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.82 E-value=3.7e-06 Score=65.58 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=27.8
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEe
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTF 51 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll 51 (80)
.=|+|||++||++++++|.|.||||||||.
T Consensus 34 hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 34 HNLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SSCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred cccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 358999999999999999999999999985
No 213
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.81 E-value=3.9e-06 Score=65.35 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=27.8
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEe
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTF 51 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll 51 (80)
.=|+|||++||++++++|.|.||||||||.
T Consensus 32 hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred ccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 348999999999999999999999999985
No 214
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.80 E-value=3.1e-06 Score=61.94 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=38.0
Q ss_pred ceeeeeeccceeeeeecccCCCceeEeeeeec--eeecCCCceeeeecc
Q psy7220 25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHS 71 (80)
Q Consensus 25 ~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g--l~~~~~G~i~~~~~~ 71 (80)
+.+.+++.++..+.|.|++||||||+++.|.. +..++.+++.+...+
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liD 206 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID 206 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEEC
Confidence 36888999999999999999999999998865 455566777765544
No 215
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.78 E-value=1.2e-06 Score=54.19 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.4
Q ss_pred eeeeeecccCCCceeEeeeeece
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl 57 (80)
-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999873
No 216
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.77 E-value=2.1e-06 Score=56.76 Aligned_cols=40 Identities=23% Similarity=0.220 Sum_probs=30.5
Q ss_pred eeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
..+.+..+.|+|++||||||+.+.|+..+. .+.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence 567788999999999999999999987543 2345555543
No 217
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.76 E-value=2.1e-06 Score=53.45 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=21.4
Q ss_pred ccceeeeeecccCCCceeEeeeee
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~ 55 (80)
.+|.+++|+|++||||||+.+.|+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 367889999999999999999987
No 218
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.74 E-value=2.3e-06 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.2
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|++|+|||||++.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998853
No 219
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.73 E-value=1.3e-06 Score=62.23 Aligned_cols=50 Identities=12% Similarity=0.205 Sum_probs=40.9
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCC-ceeeeecc
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHS 71 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G-~i~~~~~~ 71 (80)
+.|+++...+++|+++.|.|++|+|||||+..++....+..| .+.+.+.+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 578888888999999999999999999999988887665445 56665543
No 220
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.69 E-value=2.8e-06 Score=52.05 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=20.9
Q ss_pred eeeeeecccCCCceeEeeeeecee
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
-.++|+|++|+|||||++.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999998753
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.69 E-value=3e-06 Score=55.55 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=24.8
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
.++.+++.+++| +.|+||+|+||||+++++++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455566666666 78999999999999999987653
No 222
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.67 E-value=4.2e-06 Score=58.30 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=29.4
Q ss_pred eeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~ 67 (80)
-+++|+++.|.|++|+|||||+..++.......+.+.|
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vly 94 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAF 94 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 57899999999999999999987776544444455544
No 223
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.66 E-value=4.6e-06 Score=59.93 Aligned_cols=40 Identities=25% Similarity=0.193 Sum_probs=34.1
Q ss_pred cceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i 72 (80)
++.+++++|++|+||||++..|+..+.+..+++.+-..++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999998888778887755443
No 224
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.66 E-value=4.5e-06 Score=58.09 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=30.7
Q ss_pred cceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
.+..+.|+|++||||||+++.+.....+..+.+.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 5667889999999999999999887777777777654
No 225
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.65 E-value=3.5e-06 Score=54.90 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.2
Q ss_pred eeccceeeeeecccCCCceeEeeeeec
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
.-.++.+++|+|++||||||+.+.|++
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999999985
No 226
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.65 E-value=3.1e-06 Score=64.39 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=27.8
Q ss_pred eeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220 29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
|.+++++.+.|+||+|||||||+++|++...
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999999998754
No 227
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.57 E-value=5.2e-06 Score=50.72 Aligned_cols=22 Identities=23% Similarity=0.055 Sum_probs=19.6
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
+++|.|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998754
No 228
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.56 E-value=2.4e-06 Score=56.89 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=25.1
Q ss_pred ceeeeeecccCCCceeEeeeee---ceeecCCCce
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNA 65 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~---gl~~~~~G~i 65 (80)
.-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4479999999999999999998 5444455544
No 229
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.55 E-value=4.6e-06 Score=53.10 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.5
Q ss_pred eeeeeecccCCCceeEeeeeeceeec
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGAIKP 60 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl~~~ 60 (80)
.+++|+|++|||||||++.|.+.+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 47889999999999999999887654
No 230
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.52 E-value=7.6e-06 Score=49.62 Aligned_cols=19 Identities=32% Similarity=0.544 Sum_probs=17.7
Q ss_pred eeeeecccCCCceeEeeee
Q psy7220 36 CFGLLGLNGAGKTTTFKML 54 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l 54 (80)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999988
No 231
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.51 E-value=8.6e-06 Score=52.87 Aligned_cols=28 Identities=36% Similarity=0.386 Sum_probs=22.9
Q ss_pred eeeeecccCCCceeEeeeeeceeecCCC
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAIKPTSG 63 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G 63 (80)
.++|+|++|+|||||++.|.|...+..+
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5789999999999999999986654443
No 232
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.49 E-value=9e-06 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.9
Q ss_pred ccceeeeeecccCCCceeEeeeeec
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
+++.++.|.|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999999998865
No 233
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.49 E-value=1.2e-05 Score=50.47 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.0
Q ss_pred ceeeeeecccCCCceeEeeeeece
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999998763
No 234
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.48 E-value=8.5e-06 Score=50.51 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.0
Q ss_pred ceeeeeecccCCCceeEeeeeece
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
+.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999988753
No 235
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.47 E-value=8.6e-06 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=20.6
Q ss_pred ceeeeeecccCCCceeEeeeeece
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
+.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457889999999999999988753
No 236
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.44 E-value=2.3e-06 Score=54.26 Aligned_cols=24 Identities=38% Similarity=0.674 Sum_probs=20.6
Q ss_pred eeeeecccCCCceeEeeeeeceee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
+++|.|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999998876553
No 237
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.43 E-value=9.1e-06 Score=50.53 Aligned_cols=25 Identities=36% Similarity=0.165 Sum_probs=21.9
Q ss_pred eccceeeeeecccCCCceeEeeeee
Q psy7220 31 VGRGECFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 31 i~~g~~~~iiG~nGsGKsTll~~l~ 55 (80)
..++.++.|.|++||||||+.+.|+
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHH
Confidence 3467789999999999999999887
No 238
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.43 E-value=1.1e-05 Score=50.57 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.4
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
+++|.|++||||||+.+.|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 578999999999999999987
No 239
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.42 E-value=1.3e-05 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.2
Q ss_pred cceeeeeecccCCCceeEeeeeec
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 240
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.41 E-value=1.1e-05 Score=53.42 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=19.4
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
+++|+||+||||||+.+.|+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5789999999999999988754
No 241
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.38 E-value=2.7e-06 Score=61.70 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=30.2
Q ss_pred CccccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
....++++++.+++| +.|+||+|+|||||++++++..
T Consensus 37 ~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 37 DPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred ChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 334666777788888 7799999999999999998754
No 242
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.35 E-value=1.6e-05 Score=52.82 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=21.2
Q ss_pred eeeeecccCCCceeEeeeeeceee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
.++|+|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 578999999999999999988643
No 243
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.35 E-value=1.3e-05 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.5
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.+.|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998754
No 244
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.35 E-value=2.1e-05 Score=53.13 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.3
Q ss_pred eccceeeeeecccCCCceeEeeeeec
Q psy7220 31 VGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 31 i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
-..+..+.|.||+||||||+.+.|..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34577899999999999999998864
No 245
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.33 E-value=1.7e-05 Score=49.79 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.5
Q ss_pred cceeeeeecccCCCceeEeeeeecee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999887643
No 246
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.32 E-value=1.6e-05 Score=48.82 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.4
Q ss_pred eeeeeecccCCCceeEeeeeec
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~g 56 (80)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3678999999999999998875
No 247
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.32 E-value=2.3e-05 Score=55.18 Aligned_cols=35 Identities=34% Similarity=0.544 Sum_probs=27.3
Q ss_pred eeeeeecccCCCceeEeeeeec-----------eeecCCCceeeee
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTG-----------AIKPTSGNAYVMN 69 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~g-----------l~~~~~G~i~~~~ 69 (80)
..++|+|.+++|||||++.|++ ...|..|.+.+.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 4689999999999999999987 2345566666654
No 248
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.32 E-value=1.7e-05 Score=51.01 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=17.4
Q ss_pred eeeecccCCCceeEeeeeec
Q psy7220 37 FGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 37 ~~iiG~nGsGKsTll~~l~g 56 (80)
+.|+||+|||||||++.|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999987753
No 249
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.32 E-value=1.9e-05 Score=49.60 Aligned_cols=27 Identities=26% Similarity=0.557 Sum_probs=22.8
Q ss_pred cceeeeeecccCCCceeEeeeeeceee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 466899999999999999999876443
No 250
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.31 E-value=1.8e-05 Score=49.22 Aligned_cols=24 Identities=38% Similarity=0.347 Sum_probs=20.7
Q ss_pred ceeeeeecccCCCceeEeeeeece
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
+..+.|+|++||||||+.+.|+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 557889999999999999988753
No 251
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.31 E-value=1.4e-05 Score=53.89 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=25.9
Q ss_pred eeeccceeeeeecccCCCceeEeeeeecee
Q psy7220 29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+.++++..+.|.||+|+||||+++++++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346778889999999999999999998754
No 252
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.30 E-value=1.9e-05 Score=49.18 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.0
Q ss_pred ccceeeeeecccCCCceeEeeeeec
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
.++.+++|.|+.||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4667899999999999999998874
No 253
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.29 E-value=2.1e-05 Score=49.68 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=22.7
Q ss_pred ccceeeeeecccCCCceeEeeeeece
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
.+|.+++|.|+.||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46788999999999999999988753
No 254
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.29 E-value=2.1e-05 Score=48.77 Aligned_cols=23 Identities=30% Similarity=0.247 Sum_probs=20.0
Q ss_pred ceeeeeecccCCCceeEeeeeec
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~g 56 (80)
+.+++|.|+.||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999988764
No 255
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.27 E-value=8.9e-06 Score=50.87 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=23.4
Q ss_pred eeccceeeeeecccCCCceeEeeeeece
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
+++.+.+++|.|+.||||||+.+.|+..
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778999999999999999988653
No 256
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.26 E-value=2.3e-05 Score=49.50 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=22.7
Q ss_pred ccceeeeeecccCCCceeEeeeeece
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
.+|-+++|.|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999988743
No 257
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.24 E-value=2.3e-05 Score=48.49 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.9
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
++.|.|+.||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999887643
No 258
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.24 E-value=2.6e-05 Score=48.18 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=16.5
Q ss_pred cceeeeeecccCCCceeEeeeeec
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
++.++.|.|+.||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999998864
No 259
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.18 E-value=2.9e-05 Score=48.44 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=20.2
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999987654
No 260
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.17 E-value=2.6e-05 Score=50.71 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.2
Q ss_pred eeccceeeeeecccCCCceeEeeee
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKML 54 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l 54 (80)
.+.+|+.+.+.||+||||||++..+
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHH
Confidence 4568999999999999999977654
No 261
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.16 E-value=2.9e-05 Score=48.81 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=20.1
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999999999764
No 262
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.15 E-value=2.6e-05 Score=52.68 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=24.9
Q ss_pred ccceeeeeecccCCCceeEeeeeeceeec
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAIKP 60 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~ 60 (80)
..+..+.|.||+|+|||||++.+++...+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34778999999999999999999887654
No 263
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.14 E-value=4.5e-05 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=18.4
Q ss_pred cceeeeeecccCCCceeEeeeeece
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
+.-+++|.|++||||||+.+.|...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988763
No 264
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.12 E-value=3.3e-05 Score=58.82 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=32.7
Q ss_pred eeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220 28 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71 (80)
Q Consensus 28 sl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~ 71 (80)
++.+.++..+.|+||+|+|||||.+++++... .+.+.+++.+
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~ 546 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPE 546 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSS
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechH
Confidence 56678899999999999999999999998763 3444444433
No 265
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.11 E-value=4.2e-05 Score=46.02 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=19.6
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++++|+.|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999988754
No 266
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.11 E-value=4.1e-05 Score=47.74 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=17.0
Q ss_pred eeeeecccCCCceeEeeeee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~ 55 (80)
.++|+|++|+|||||++.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999996544
No 267
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.10 E-value=3.6e-05 Score=48.95 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.4
Q ss_pred eeeeecccCCCceeEeeeeeceeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAIKP 60 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~~~ 60 (80)
+++|+|++|||||||+..|...+..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHh
Confidence 6889999999999999888876543
No 268
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.09 E-value=3.6e-05 Score=47.64 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.6
Q ss_pred eeeeeecccCCCceeEeeeeecee
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
-.++++|+.|+|||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999887653
No 269
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.09 E-value=0.00015 Score=44.36 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=9.1
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999988754
No 270
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.09 E-value=4.4e-05 Score=48.91 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=21.3
Q ss_pred cceeeeeecccCCCceeEeeeeece
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
++-++.|+|+.||||||+.+.|+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999988653
No 271
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.08 E-value=4.3e-05 Score=49.28 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=20.5
Q ss_pred ccceeeeeecccCCCceeEeeeeec
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
.++.++.|.|+.||||||+.+.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999998873
No 272
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.08 E-value=5.5e-05 Score=52.20 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=25.1
Q ss_pred eeccceeeeeecccCCCceeEeeeeece
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
.+++|+++.|.|++|+|||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999877763
No 273
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.07 E-value=4.8e-05 Score=46.52 Aligned_cols=24 Identities=42% Similarity=0.473 Sum_probs=20.3
Q ss_pred cceeeeeecccCCCceeEeeeeec
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
+.-.++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344688999999999999988873
No 274
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.07 E-value=4.5e-05 Score=51.27 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.7
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58899999999999999999853
No 275
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.07 E-value=4.9e-05 Score=47.08 Aligned_cols=29 Identities=48% Similarity=0.598 Sum_probs=23.1
Q ss_pred eeeeeecccCCCceeEeeeeecee----ecCCC
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGAI----KPTSG 63 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl~----~~~~G 63 (80)
-.++++|++|+|||||++.+.+-. .|+.|
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 458899999999999999988652 45555
No 276
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.07 E-value=4.3e-05 Score=48.59 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=18.4
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++|.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998854
No 277
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.05 E-value=4.7e-05 Score=48.30 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=23.5
Q ss_pred cceeeeeecccCCCceeEeeeeeceeec
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAIKP 60 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~ 60 (80)
.+..+.|.||+|+||||+++.++.....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5678889999999999999988765543
No 278
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.04 E-value=4.8e-05 Score=47.17 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.4
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988753
No 279
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.04 E-value=5.7e-05 Score=45.81 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.4
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 280
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.03 E-value=4.8e-05 Score=48.78 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=20.9
Q ss_pred cceeeeeecccCCCceeEeeeeece
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
.+.++.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999988643
No 281
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.02 E-value=5e-05 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.0
Q ss_pred ceeeeeecccCCCceeEeeeeec
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~g 56 (80)
..+++|.|+.||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998864
No 282
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.02 E-value=6.2e-05 Score=51.94 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=22.3
Q ss_pred cceeeeeecccCCCceeEeeeeecee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
..-.++++|++|+|||||++.|++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578899999999999999998864
No 283
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.01 E-value=6.5e-05 Score=51.29 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=24.8
Q ss_pred eeccceeeeeecccCCCceeEeeeeece
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
.+++|+++.|.|++|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999998877653
No 284
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.01 E-value=1.7e-05 Score=49.72 Aligned_cols=40 Identities=20% Similarity=0.446 Sum_probs=29.4
Q ss_pred CCccccceeeeeeccce---eeeeecccCCCceeEeeeeecee
Q psy7220 19 DTKPAVNQISFGVGRGE---CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g~---~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+...+++.+.-.+..+. .+.|.||.|+||||+++.++...
T Consensus 27 g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 27 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44445555555555565 68899999999999999887654
No 285
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.01 E-value=4.6e-05 Score=46.65 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=19.0
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
+++|.|+.||||||+.+.|+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998875
No 286
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.01 E-value=6.2e-05 Score=47.43 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=20.8
Q ss_pred ccceeeeeecccCCCceeEeeeeec
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
.+..+++|.|+.||||||+.+.|+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999988863
No 287
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.01 E-value=5.9e-05 Score=47.62 Aligned_cols=26 Identities=38% Similarity=0.336 Sum_probs=21.5
Q ss_pred ccceeeeeecccCCCceeEeeeeece
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
..+-+++|.|+.||||||+.+.|+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34557899999999999999988753
No 288
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.01 E-value=5.3e-05 Score=48.23 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=18.4
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998854
No 289
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.01 E-value=5.4e-05 Score=45.80 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=19.5
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999887653
No 290
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.01 E-value=6.1e-05 Score=47.43 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=24.3
Q ss_pred eeeeeecccCCCceeEeeeeeceeecCCCce
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i 65 (80)
..+.|.||+|+|||||+++++.........+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 5788999999999999999887665433333
No 291
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.00 E-value=0.00015 Score=45.07 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=4.5
Q ss_pred eeeeeecccCCCceeEeeeeece
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl 57 (80)
-.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999988765
No 292
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.00 E-value=4.7e-05 Score=51.72 Aligned_cols=26 Identities=38% Similarity=0.406 Sum_probs=23.1
Q ss_pred eeeeecccCCCceeEeeeeeceeecC
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAIKPT 61 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~~~~ 61 (80)
.+.|.||+|+||||+++.+.+...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 78999999999999999998877654
No 293
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.00 E-value=4.9e-05 Score=45.60 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=19.2
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999988753
No 294
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.99 E-value=4.9e-05 Score=45.22 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.1
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988654
No 295
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.99 E-value=5.7e-05 Score=45.36 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.9
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++++|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999988876
No 296
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.98 E-value=5.9e-05 Score=46.37 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=19.9
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 57899999999999999887653
No 297
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.98 E-value=5.9e-05 Score=46.64 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.0
Q ss_pred eeeeeecccCCCceeEeeeeece
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl 57 (80)
-.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999988764
No 298
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.98 E-value=5.9e-05 Score=46.05 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.9
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
+++|.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998875
No 299
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.96 E-value=6.3e-05 Score=49.39 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.2
Q ss_pred ceeeeeecccCCCceeEeeeeec
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~g 56 (80)
--+++|.|+.||||||+.+.|+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
No 300
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.96 E-value=6.2e-05 Score=45.37 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=18.9
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999988653
No 301
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.96 E-value=5.1e-05 Score=46.65 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.6
Q ss_pred eeeeecccCCCceeEeeeeeceee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
.++|+|+.|+|||||++.+.+...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999998887543
No 302
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.94 E-value=5.8e-05 Score=45.03 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=18.3
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++++|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999987764
No 303
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.94 E-value=4.3e-05 Score=51.47 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=31.2
Q ss_pred CCccccceeeeeeccc--eeeeeecccCCCceeEeeeeecee
Q psy7220 19 DTKPAVNQISFGVGRG--ECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g--~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+...+++.+...+..+ ..+.|.||+|+||||+++.++..+
T Consensus 41 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 41 AQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp SCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4455666666666666 448899999999999999998764
No 304
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.94 E-value=5.9e-05 Score=45.02 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.2
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988764
No 305
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.94 E-value=5.9e-05 Score=45.03 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.0
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988653
No 306
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.94 E-value=6.6e-05 Score=46.07 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.9
Q ss_pred eeeeeecccCCCceeEeeeeec
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~g 56 (80)
++++|.|+.||||||+.+.|+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998875
No 307
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.93 E-value=7.8e-05 Score=45.28 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.5
Q ss_pred cceeeeeecccCCCceeEeeeeec
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
+.-.++++|+.|+|||||++.+.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 445688999999999999998865
No 308
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.93 E-value=0.00011 Score=46.29 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.1
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 57899999999999999987643
No 309
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.93 E-value=7.2e-05 Score=49.24 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=21.2
Q ss_pred ceeeeeecccCCCceeEeeeeecee
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.-.++|+|.+|+|||||++.|.|-.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 3458899999999999999998754
No 310
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.93 E-value=6.4e-05 Score=45.27 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=18.9
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999887643
No 311
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.92 E-value=7.1e-05 Score=45.90 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=19.6
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 36899999999999999887643
No 312
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.92 E-value=6.3e-05 Score=45.19 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.7
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999998887643
No 313
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.92 E-value=6.4e-05 Score=45.64 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.0
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999887653
No 314
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.91 E-value=6.4e-05 Score=45.16 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.0
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999888653
No 315
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.91 E-value=6.5e-05 Score=45.56 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.2
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888654
No 316
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.90 E-value=6.7e-05 Score=44.95 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.7
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++++|+.|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998865
No 317
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.89 E-value=0.00017 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=19.9
Q ss_pred eeeeeecccCCCceeEeeeeece
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl 57 (80)
=.++|+|+.|+|||||++.+.+-
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999988764
No 318
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.89 E-value=6.8e-05 Score=46.56 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.3
Q ss_pred eeeeeecccCCCceeEeeeeec
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~g 56 (80)
.+++|+|+.||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998865
No 319
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.89 E-value=9e-05 Score=49.03 Aligned_cols=25 Identities=36% Similarity=0.266 Sum_probs=21.5
Q ss_pred cceeeeeecccCCCceeEeeeeece
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999999988754
No 320
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.89 E-value=9.1e-05 Score=49.23 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=18.8
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|++|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999887653
No 321
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.88 E-value=7e-05 Score=44.89 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=18.7
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999877643
No 322
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.88 E-value=7.4e-05 Score=50.41 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=23.5
Q ss_pred ceeeeeecccCCCceeEeeeeeceeecC
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAIKPT 61 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~~~~ 61 (80)
+..+.|.||+|+|||||++.++......
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4578899999999999999998766543
No 323
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.87 E-value=0.00014 Score=45.97 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.3
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998853
No 324
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.87 E-value=7.4e-05 Score=45.35 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.0
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988643
No 325
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.87 E-value=7.5e-05 Score=45.85 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=19.6
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.|.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
No 326
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.87 E-value=8.7e-05 Score=49.87 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.7
Q ss_pred ceeeeeecccCCCceeEeeeee
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~ 55 (80)
.-+++|.|+.||||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 327
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.86 E-value=9.5e-05 Score=50.20 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=21.9
Q ss_pred cceeeeeecccCCCceeEeeeeece
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
+-.+++|+|+.|+|||||++.|.|.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4457899999999999999999875
No 328
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.85 E-value=0.00016 Score=50.15 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=30.8
Q ss_pred CCCccccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 18 ~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
+.....++...+.+ .|.-+.|.|++|+||||+...|..
T Consensus 129 ~~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 129 LARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TCEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 34456788888887 778899999999999999877664
No 329
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.85 E-value=9.3e-05 Score=49.11 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=21.9
Q ss_pred cceeeeeecccCCCceeEeeeeecee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
++..+.|.||+|+||||+++++++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45678899999999999999987643
No 330
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.84 E-value=8e-05 Score=45.54 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.1
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988653
No 331
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.84 E-value=9.4e-05 Score=49.15 Aligned_cols=23 Identities=43% Similarity=0.429 Sum_probs=20.5
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|..|+|||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999998863
No 332
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.84 E-value=0.00011 Score=48.26 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.5
Q ss_pred ccceeeeeecccCCCceeEeeeeec
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
.++-+++|.|+.||||||+.+.|+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999999999998864
No 333
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.84 E-value=8e-05 Score=44.61 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.6
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++++|+.|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999988875
No 334
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.83 E-value=9.4e-05 Score=47.79 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.5
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
+++|.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 335
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.83 E-value=8.3e-05 Score=45.50 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=18.9
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++|+|+.|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999988875
No 336
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.82 E-value=9.4e-05 Score=47.47 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=20.7
Q ss_pred ceeeeeecccCCCceeEeeeeece
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
.-+++|+|..||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999988754
No 337
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.82 E-value=8.5e-05 Score=46.01 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.4
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999988763
No 338
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.82 E-value=9.8e-05 Score=44.83 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.2
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999988753
No 339
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.81 E-value=0.00012 Score=45.34 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=20.7
Q ss_pred eeeeeecccCCCceeEeeeeecee
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999887654
No 340
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.80 E-value=8.8e-05 Score=52.12 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.4
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|++|+|||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998863
No 341
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.79 E-value=9.3e-05 Score=44.55 Aligned_cols=23 Identities=43% Similarity=0.484 Sum_probs=19.5
Q ss_pred ceeeeeecccCCCceeEeeeeec
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~g 56 (80)
.-.++++|+.|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34588999999999999988854
No 342
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.77 E-value=0.00012 Score=46.95 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.4
Q ss_pred cceeeeeecccCCCceeEeeeeec
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
++-++.|.|+.||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999998864
No 343
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.77 E-value=9.8e-05 Score=44.97 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.1
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5789999999999999888653
No 344
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.77 E-value=0.00012 Score=49.84 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.2
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
+++|+|++|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
No 345
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.77 E-value=9.8e-05 Score=44.68 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.7
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++|+|+.|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998864
No 346
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.76 E-value=0.00012 Score=47.89 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.1
Q ss_pred eeeeeecccCCCceeEeeeeece
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl 57 (80)
-.++|+|+.|+|||||++.|.+-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999988764
No 347
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.76 E-value=9.5e-05 Score=53.78 Aligned_cols=43 Identities=28% Similarity=0.357 Sum_probs=32.6
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCcee
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~ 66 (80)
+++.+ +.+-+|+..+|+|++|+|||||++.|........+.+.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 45444 56678999999999999999999988776544344444
No 348
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.76 E-value=0.0001 Score=45.46 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.2
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999988653
No 349
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.76 E-value=0.0001 Score=44.60 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.3
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988754
No 350
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.76 E-value=0.00011 Score=52.47 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=27.7
Q ss_pred eeeccc--eeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220 29 FGVGRG--ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67 (80)
Q Consensus 29 l~i~~g--~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~ 67 (80)
|.+.++ .+++++|++|+||||++..|++.+......+.+
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVll 132 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPAL 132 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEE
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 444434 589999999999999999998866433233433
No 351
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.75 E-value=0.0001 Score=44.17 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=18.3
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++++|+.|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999988864
No 352
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.75 E-value=0.00026 Score=46.56 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=26.2
Q ss_pred CCccccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~ 55 (80)
.....++..-+.+ .|..+.|+||+|+|||||...|+
T Consensus 20 a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 20 AERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp -CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHH
T ss_pred CcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHH
Confidence 3345566655554 56778899999999999987664
No 353
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.75 E-value=0.0001 Score=44.77 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.1
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999888653
No 354
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.73 E-value=0.00018 Score=47.40 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=22.9
Q ss_pred ccceeeeeecccCCCceeEeeeeecee
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++-+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 577899999999999999999887654
No 355
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.73 E-value=0.00012 Score=46.75 Aligned_cols=21 Identities=33% Similarity=0.308 Sum_probs=18.5
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++|.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999998865
No 356
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.73 E-value=0.00011 Score=46.38 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.8
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887643
No 357
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.72 E-value=0.00014 Score=44.73 Aligned_cols=25 Identities=44% Similarity=0.614 Sum_probs=21.0
Q ss_pred cceeeeeecccCCCceeEeeeeece
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
+.-.++++|+.|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4456889999999999999988754
No 358
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.71 E-value=0.00015 Score=44.83 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.3
Q ss_pred ceeeeeecccCCCceeEeeeeece
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
.-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999988763
No 359
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.70 E-value=0.00012 Score=45.63 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.3
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999888654
No 360
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.70 E-value=0.00012 Score=44.84 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.1
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999888653
No 361
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.70 E-value=0.00012 Score=44.49 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=19.2
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999888754
No 362
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.70 E-value=0.00012 Score=45.47 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.0
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888643
No 363
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.69 E-value=0.00014 Score=48.43 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.2
Q ss_pred eeeeeecccCCCceeEeeeeec
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~g 56 (80)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999998864
No 364
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.69 E-value=0.00012 Score=45.22 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=19.0
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 578999999999999998875
No 365
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.68 E-value=0.00014 Score=48.51 Aligned_cols=23 Identities=48% Similarity=0.728 Sum_probs=20.4
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|..|+|||||++.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 366
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.68 E-value=0.00013 Score=45.08 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.4
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999988764
No 367
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.68 E-value=0.00015 Score=48.19 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.3
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|+.|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999998743
No 368
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.68 E-value=0.00016 Score=45.01 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.0
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999887643
No 369
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.68 E-value=0.00013 Score=45.08 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.1
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
No 370
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.67 E-value=0.00016 Score=43.92 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=21.6
Q ss_pred cceeeeeecccCCCceeEeeeeecee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
....+.|.||.|+|||++++.++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 44668899999999999998887654
No 371
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.70 E-value=0.00028 Score=44.16 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=19.2
Q ss_pred ceeeeeecccCCCceeEeeeeec
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~g 56 (80)
.=.++++|+.|+|||||++.+.+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 34578999999999999987764
No 372
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.67 E-value=0.00014 Score=47.98 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=23.0
Q ss_pred eccceeeeeecccCCCceeEeeeeecee
Q psy7220 31 VGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 31 i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+.++..+.|.||+|+|||++++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456668899999999999999997653
No 373
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.67 E-value=0.00018 Score=48.75 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.9
Q ss_pred eeccceeeeeecccCCCceeEeeeeec
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
-+++|+++.|.|++|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999876653
No 374
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.66 E-value=0.00016 Score=48.39 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.8
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|+.++|||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58899999999999999998864
No 375
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.66 E-value=0.00018 Score=50.82 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.0
Q ss_pred eccceeeeeecccCCCceeEeeeeec
Q psy7220 31 VGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 31 i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
-....++.|+|++||||||+.+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998764
No 376
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.65 E-value=0.00014 Score=45.28 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.2
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999988653
No 377
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.64 E-value=0.00014 Score=44.52 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=18.9
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999887643
No 378
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.64 E-value=0.00014 Score=45.55 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=21.2
Q ss_pred cceeeeeecccCCCceeEeeeeecee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+.=.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34458899999999999999887643
No 379
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.64 E-value=0.00029 Score=45.08 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=22.0
Q ss_pred eeccceeeeeecccCCCceeEeeee
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKML 54 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l 54 (80)
-+++|+++.|.|+.|+|||+|..-+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 4789999999999999999997543
No 380
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.64 E-value=0.00017 Score=46.19 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.4
Q ss_pred ceeeeeecccCCCceeEeeeeece
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
.-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999888764
No 381
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.63 E-value=0.00014 Score=44.93 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.3
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999888654
No 382
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.63 E-value=0.00014 Score=44.31 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=17.6
Q ss_pred eeeeecccCCCceeEeeeee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~ 55 (80)
.++++|+.|+|||||++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999997665
No 383
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.63 E-value=0.00015 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=19.8
Q ss_pred eeeeeecccCCCceeEeeeeece
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl 57 (80)
-.++|+|+.|+|||||++.|.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999887654
No 384
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.62 E-value=0.00018 Score=47.42 Aligned_cols=28 Identities=32% Similarity=0.647 Sum_probs=20.6
Q ss_pred eccceeeeeecccCCCceeEeeeeecee
Q psy7220 31 VGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 31 i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
..+|-+++|.|+.||||||+.+.|...+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998886544
No 385
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.62 E-value=0.00017 Score=50.40 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=19.7
Q ss_pred eeeeeecccCCCceeEeeeeece
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl 57 (80)
.+++|+||+|||||||.+.|+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 37899999999999999877654
No 386
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.61 E-value=0.00017 Score=44.99 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.2
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999888654
No 387
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.61 E-value=8e-05 Score=48.76 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=21.8
Q ss_pred eeeccceeeeeecccCCCceeEeeeeecee
Q psy7220 29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+..+.| +.|.||+|+|||+++++++...
T Consensus 41 ~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 41 AKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 334444 7789999999999999988643
No 388
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.61 E-value=0.00015 Score=44.30 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=18.0
Q ss_pred eeeeecccCCCceeEeeeee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~ 55 (80)
.++|+|+.|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 57899999999999998876
No 389
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.61 E-value=7e-05 Score=47.39 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.8
Q ss_pred eeeeeecccCCCceeEeeeeecee
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
-.++|+|+.|+|||||++.|.+-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998753
No 390
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.61 E-value=0.00015 Score=45.67 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=23.4
Q ss_pred ccceeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
.-.++.|.-...-.++++|+.|+|||||++.+.+-
T Consensus 14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 14 GTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp -----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 33444444444456899999999999999888763
No 391
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.60 E-value=0.00021 Score=50.04 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=21.7
Q ss_pred cceeeeeecccCCCceeEeeeeecee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
++..+.|+||+|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999988777543
No 392
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.00015 Score=44.94 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.3
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4789999999999999988753
No 393
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.00017 Score=44.49 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=19.6
Q ss_pred ceeeeeecccCCCceeEeeeeec
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~g 56 (80)
.-.++++|+.|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999988873
No 394
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.60 E-value=0.00016 Score=44.47 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.2
Q ss_pred eeeeeecccCCCceeEeeeeec
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~g 56 (80)
-.++++|+.|+|||||++.+.+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999998875
No 395
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.60 E-value=0.00018 Score=44.97 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.7
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++++|+.|+|||||++.+.+-.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999998877743
No 396
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.59 E-value=0.0002 Score=46.43 Aligned_cols=25 Identities=40% Similarity=0.402 Sum_probs=21.1
Q ss_pred cceeeeeecccCCCceeEeeeeece
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
.+..+.|+|+.||||||+.+.|+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999988743
No 397
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.58 E-value=0.00016 Score=44.67 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=18.6
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++|+|+.|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999988864
No 398
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.57 E-value=0.00018 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.2
Q ss_pred eeeeeecccCCCceeEeeeeece
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl 57 (80)
=.++|+|+.|+|||||++.+.+-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999988653
No 399
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.57 E-value=0.00012 Score=49.86 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=30.2
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
-+.|+.+.--+++|+++.|.|++|+|||||+..++.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 356777776799999999999999999999876653
No 400
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.56 E-value=0.00017 Score=44.74 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.1
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999888653
No 401
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.56 E-value=0.00017 Score=45.16 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.2
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999888653
No 402
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.56 E-value=0.00022 Score=46.44 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=23.1
Q ss_pred ccceeeeeecccCCCceeEeeeeeceee
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
-+|.+++|.|+.||||||+.+.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998865443
No 403
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.55 E-value=0.00024 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.8
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|++|+|||||++.|.|-.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999998854
No 404
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.55 E-value=0.00021 Score=49.91 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.9
Q ss_pred eccceeeeeecccCCCceeEeeeeece
Q psy7220 31 VGRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 31 i~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
+++|+++.|.|++|+|||||...++..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999998766643
No 405
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.55 E-value=0.00017 Score=44.29 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.8
Q ss_pred eeeeeecccCCCceeEeeeeece
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl 57 (80)
-.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999988654
No 406
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.55 E-value=0.00022 Score=46.29 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.2
Q ss_pred ceeeeeecccCCCceeEeeeeecee
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+.+++|.|+.||||||+.+.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5678999999999999999887543
No 407
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.55 E-value=0.00018 Score=45.14 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.8
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++|+|++|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999988875
No 408
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.54 E-value=0.00021 Score=47.24 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.8
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|..++|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58899999999999999998864
No 409
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.54 E-value=0.00018 Score=45.62 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=19.0
Q ss_pred eeeeeecccCCCceeEeeeeec
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~g 56 (80)
=.++|+|+.|+|||||++.+.+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3588999999999999987764
No 410
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.53 E-value=0.00021 Score=45.08 Aligned_cols=22 Identities=36% Similarity=0.318 Sum_probs=19.2
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999888753
No 411
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.53 E-value=0.00018 Score=44.58 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.4
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999988764
No 412
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.51 E-value=0.00019 Score=44.86 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=20.1
Q ss_pred ceeeeeecccCCCceeEeeeeece
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
.=.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999888753
No 413
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.51 E-value=0.00019 Score=44.64 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=19.6
Q ss_pred eeeeeecccCCCceeEeeeeece
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl 57 (80)
-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999888653
No 414
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.51 E-value=0.00021 Score=43.49 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=18.9
Q ss_pred eeeeeecccCCCceeEeeeeec
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~g 56 (80)
-.++++|+.|+|||||++.+.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999988764
No 415
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.50 E-value=0.0002 Score=44.78 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=20.4
Q ss_pred ccceeeeeecccCCCceeEeeeeece
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
++.-.++|+|+.|+|||||++.+.+-
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34456889999999999999988653
No 416
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.50 E-value=0.00025 Score=43.73 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=19.5
Q ss_pred ceeeeeecccCCCceeEeeeeec
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~g 56 (80)
.-.++++|+.|+|||||++.+.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34588999999999999988853
No 417
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.49 E-value=0.00022 Score=47.72 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.8
Q ss_pred eeeeeecccCCCceeEeeeeeceee
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
..++++|.+|+|||||++.|.+-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4788999999999999999987654
No 418
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.49 E-value=0.0002 Score=44.37 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=19.7
Q ss_pred ceeeeeecccCCCceeEeeeeec
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~g 56 (80)
.=.++|+|+.|+|||||++.+.+
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHc
Confidence 34578999999999999988875
No 419
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.49 E-value=0.00023 Score=45.21 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.9
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++++|+.|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999998875
No 420
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.49 E-value=0.00023 Score=44.30 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=19.6
Q ss_pred cceeeeeecccCCCceeEeeeeece
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
+.-.++++|+.|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3345889999999999999887653
No 421
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.48 E-value=0.00026 Score=44.23 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=20.0
Q ss_pred cceeeeeecccCCCceeEeeeeec
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 344688999999999999998854
No 422
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.48 E-value=0.00016 Score=50.42 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=36.1
Q ss_pred ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69 (80)
Q Consensus 21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~ 69 (80)
-+.|+.+.--+.+|+.+.|.|++|+|||||+..++.......+.+.+..
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3566666668999999999999999999998777654433334454443
No 423
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.47 E-value=0.00021 Score=45.38 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=19.9
Q ss_pred eeeeeecccCCCceeEeeeeece
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl 57 (80)
-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999888764
No 424
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.47 E-value=0.00024 Score=46.89 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.7
Q ss_pred eeeeeecccCCCceeEeeeeecee
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
-.++++|+.|+|||||++.|.+-.
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998744
No 425
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.46 E-value=0.00026 Score=46.91 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=23.1
Q ss_pred cceeeeeecccCCCceeEeeeeeceee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
+|.+++|.|++||||||+.+.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999988765443
No 426
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.45 E-value=0.00029 Score=46.22 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=23.4
Q ss_pred eeeeccceeeeeecccCCCceeEeeeeec
Q psy7220 28 SFGVGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 28 sl~i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
+-..++..++.|+||.||||+|..+.|+-
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34456777889999999999999988863
No 427
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.45 E-value=0.00022 Score=44.86 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.0
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999888653
No 428
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.44 E-value=0.00023 Score=45.25 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=20.4
Q ss_pred ceeeeeecccCCCceeEeeeeece
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
+-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999988653
No 429
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.44 E-value=0.00021 Score=43.44 Aligned_cols=26 Identities=35% Similarity=0.254 Sum_probs=21.5
Q ss_pred cceeeeeecccCCCceeEeeeeecee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
....+.|.||.|+||||+++.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35567899999999999999887654
No 430
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.42 E-value=0.00029 Score=45.59 Aligned_cols=27 Identities=30% Similarity=0.208 Sum_probs=21.4
Q ss_pred ccceeeeeecccCCCceeEeeeeecee
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+...-+.|.||.|+|||++.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 334457799999999999999887643
No 431
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.41 E-value=0.00027 Score=46.74 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.1
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++++|+.|+|||||++.|.+-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987643
No 432
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.41 E-value=0.00032 Score=48.84 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=19.6
Q ss_pred ceeeeeecccCCCceeEeeeeec
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~g 56 (80)
+.+++|+||+|||||||...|+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 34788999999999999887764
No 433
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.40 E-value=0.00029 Score=48.95 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=19.6
Q ss_pred eeeeeecccCCCceeEeeeeece
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl 57 (80)
..+.|+||+||||||+.+.|+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999998887754
No 434
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.40 E-value=0.0003 Score=45.88 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=23.0
Q ss_pred cceeeeeecccCCCceeEeeeeeceee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
+|.+++|-|++||||||..+.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478899999999999999988876554
No 435
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.40 E-value=0.00025 Score=44.07 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.3
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++|+|+.|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 578999999999999977754
No 436
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.40 E-value=0.00025 Score=44.48 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.1
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888753
No 437
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.40 E-value=0.00023 Score=43.34 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=18.7
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++++|+.|+|||||++.+.+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999988765
No 438
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.36 E-value=0.00074 Score=42.49 Aligned_cols=22 Identities=23% Similarity=0.148 Sum_probs=17.8
Q ss_pred ceeeeeecccCCCceeEeeeee
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLT 55 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~ 55 (80)
.=.++++|+.|+|||||++.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~ 51 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYT 51 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHH
Confidence 3457899999999999995543
No 439
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.35 E-value=0.00027 Score=43.74 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=19.1
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999888643
No 440
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.33 E-value=0.00029 Score=44.77 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=19.4
Q ss_pred eeeeeecccCCCceeEeeeeece
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl 57 (80)
-.++|+|..|+|||||++.+..-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999877654
No 441
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.30 E-value=0.00037 Score=45.61 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=23.8
Q ss_pred ccceeeeeecccCCCceeEeeeeeceee
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
.+|.++.+-|+.||||||..+.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999988876554
No 442
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.28 E-value=0.00041 Score=45.69 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.3
Q ss_pred ccceeeeeecccCCCceeEeeeeecee
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.+|.+++|.|+.||||||+.+.|...+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998887544
No 443
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.28 E-value=0.00033 Score=49.82 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=22.3
Q ss_pred ceeeeeecccCCCceeEeeeeeceee
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
...+.|.||+|+|||||++++++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999988653
No 444
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.24 E-value=0.00063 Score=49.06 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=26.4
Q ss_pred cceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~ 67 (80)
++.++.++|++|+||||++..|+..+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46789999999999999998888666543334433
No 445
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.23 E-value=0.00065 Score=41.03 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=22.3
Q ss_pred ccceeeeeecccCCCceeEeeeeecee
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
..+.-+.|.||.|+|||++.+.+....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 455668899999999999999887653
No 446
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.22 E-value=0.00054 Score=43.39 Aligned_cols=19 Identities=42% Similarity=0.426 Sum_probs=17.0
Q ss_pred eeeeecccCCCceeEeeee
Q psy7220 36 CFGLLGLNGAGKTTTFKML 54 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l 54 (80)
.++++|+.|+|||||++.+
T Consensus 17 ki~v~G~~~~GKSsli~~~ 35 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRH 35 (221)
T ss_dssp EEEEEECTTSSHHHHHTTB
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999974
No 447
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.20 E-value=0.00017 Score=51.63 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=31.3
Q ss_pred CCCcccc---ceeeeeecccee--eeeecccCCCceeEeeeeeceee
Q psy7220 18 YDTKPAV---NQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 18 ~~~~~vl---~~isl~i~~g~~--~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
.+...++ ..+...+..+.. +.|.||+|+||||+.++|+....
T Consensus 29 vGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 29 IGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3444455 556666667775 77899999999999999987653
No 448
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.00043 Score=44.65 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.9
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++|+|++|+|||||++.+.+
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999988875
No 449
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.19 E-value=0.00042 Score=46.78 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=23.0
Q ss_pred ccceeeeeecccCCCceeEeeeeecee
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
..+..+.|.||.|+||||+++.+....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456678899999999999999887655
No 450
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.19 E-value=0.00037 Score=43.77 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.1
Q ss_pred eeeeeecccCCCceeEeeeeec
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~g 56 (80)
=.++|+|+.|+|||||++.+.+
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 3588999999999999988864
No 451
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.00039 Score=44.26 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.3
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++|+|+.|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999888754
No 452
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.17 E-value=0.00035 Score=53.03 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=23.4
Q ss_pred eeccceeeeeecccCCCceeEeeeeecee
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.+..++.+.++|||||||||++.++....
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~ 133 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFD 133 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999877775443
No 453
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.14 E-value=0.00014 Score=47.97 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.0
Q ss_pred ceeeeeecccCCCceeEeeeeecee
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+..+.|.||.|+|||++.+.++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4457799999999999999887654
No 454
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.12 E-value=0.00053 Score=44.29 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.4
Q ss_pred ceeeeeecccCCCceeEeeeeecee
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
|.+++|=|+.||||||.++.|...+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 4688999999999999998887655
No 455
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.12 E-value=0.00055 Score=48.54 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=30.2
Q ss_pred cccceeeeeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
+.|+.+.--+++|+++.|.|++|+|||||+..++....
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34555555689999999999999999999877765443
No 456
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.11 E-value=0.0006 Score=47.36 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=20.0
Q ss_pred ceeeeeecccCCCceeEeeeeece
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
...+.|+||+|||||||...|+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 346889999999999999887643
No 457
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.09 E-value=0.00045 Score=43.36 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=18.9
Q ss_pred eeeeeecccCCCceeEeeeeec
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~g 56 (80)
-.++|+|+.|+|||||++.+.+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999988764
No 458
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.09 E-value=0.00046 Score=43.91 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=19.4
Q ss_pred eeeeeecccCCCceeEeeeeece
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl 57 (80)
-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35789999999999999887653
No 459
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.04 E-value=0.00066 Score=47.98 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.6
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|++++|||||++.|.|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998854
No 460
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.01 E-value=0.0007 Score=46.57 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.8
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|..++|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999854
No 461
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.01 E-value=0.00098 Score=42.21 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=18.3
Q ss_pred cceeeeeecccCCCceeEe-eee
Q psy7220 33 RGECFGLLGLNGAGKTTTF-KML 54 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll-~~l 54 (80)
+|.+..+.|+.|+||||++ +.+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHH
Confidence 4778899999999999997 443
No 462
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.97 E-value=0.00073 Score=48.38 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=18.9
Q ss_pred eeeeeecccCCCceeEeeeeec
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~g 56 (80)
.+++|.||+|||||||...|+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 4688999999999999887764
No 463
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.96 E-value=0.00094 Score=45.32 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.1
Q ss_pred cceeeeeecccCCCceeEeeeeeceee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
++..+.|.||.|+|||++.+.++....
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455788999999999999999987664
No 464
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.95 E-value=0.00063 Score=44.05 Aligned_cols=21 Identities=43% Similarity=0.476 Sum_probs=18.1
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
++.|+||.||||+|..+.|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999988874
No 465
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.93 E-value=0.00072 Score=44.84 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=21.2
Q ss_pred cceeeeeecccCCCceeEeeeeecee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.+..+.|.||.|+|||++.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34457899999999999998777655
No 466
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.92 E-value=0.00071 Score=47.42 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.3
Q ss_pred eeccceeeeeecccCCCceeEeeeeec
Q psy7220 30 GVGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 30 ~i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
-+++|+++.|.|+.|+|||||...++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999866543
No 467
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=95.92 E-value=0.0013 Score=45.58 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=24.8
Q ss_pred eeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.+.++++.--.++|+|..++|||||++.|++-.
T Consensus 150 ~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 150 YIVLELKVLADVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp EEEEEEECCCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred hHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCC
Confidence 344444444458899999999999999998753
No 468
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.92 E-value=0.00012 Score=49.40 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=32.6
Q ss_pred CCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 17 ~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
..+...+++.+...+..+.-+.|.||.|+|||++++.++...
T Consensus 29 i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 29 VVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred eeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345556666666666678889999999999999999887643
No 469
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.89 E-value=0.00062 Score=42.13 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=19.1
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.+.|.||.|+|||++++.++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999888754
No 470
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.89 E-value=0.00096 Score=40.24 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=21.3
Q ss_pred ccceeeeeecccCCCceeEeeeeece
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
+.+.-+.|.|+.|+|||++.+.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 34556889999999999999988753
No 471
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.88 E-value=0.0011 Score=45.75 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=22.2
Q ss_pred ccceeeeeecccCCCceeEeeeeecee
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.+.-+++|+|+.|+|||||+..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999887554
No 472
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.87 E-value=0.00076 Score=47.62 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=19.3
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|..++|||||++.|.+-.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37899999999999999998753
No 473
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.79 E-value=0.00097 Score=45.11 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=20.0
Q ss_pred ceeeeeecccCCCceeEeeeeece
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446889999999999999986553
No 474
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.76 E-value=0.00096 Score=43.85 Aligned_cols=26 Identities=19% Similarity=0.027 Sum_probs=21.3
Q ss_pred ccceeeeeecccCCCceeEeeeeece
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
.+...+.|.||.|+|||++.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34456778999999999999988764
No 475
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.74 E-value=0.0011 Score=44.70 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.1
Q ss_pred eeeeeecccCCCceeEeeeeecee
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
-.++++|.+|+|||||++.|.|-.
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 468999999999999999998754
No 476
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.73 E-value=0.00034 Score=46.62 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=27.0
Q ss_pred CCCccccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 18 ~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
++....++.+.-.+..|..+.|.|+.|+|||||++.+..
T Consensus 15 ~gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 15 FDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp CSCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHH
Confidence 344344444433344567899999999999999987754
No 477
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.71 E-value=0.00075 Score=48.58 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=22.2
Q ss_pred ccceeeeeecccCCCceeEeeeeece
Q psy7220 32 GRGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 32 ~~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
++|-.++|+|+.|+|||||++.|.+-
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34556999999999999999998874
No 478
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.68 E-value=0.00098 Score=45.71 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=21.6
Q ss_pred cceeeeeecccCCCceeEeeeeecee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+...+.|.||+|+|||++.++|+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 44567899999999999999998653
No 479
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.67 E-value=0.00047 Score=50.21 Aligned_cols=43 Identities=26% Similarity=0.215 Sum_probs=35.9
Q ss_pred CCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 16 ~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
..++...+++.+...+..+.-+.|.||.|+|||++.+.|+...
T Consensus 23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 3456667777777778888899999999999999999998755
No 480
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.60 E-value=0.00034 Score=47.33 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=28.7
Q ss_pred CCccccceeeeeecccee---eeeecccCCCceeEeeeeeceee
Q psy7220 19 DTKPAVNQISFGVGRGEC---FGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 19 ~~~~vl~~isl~i~~g~~---~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
+...+++.+.-.+..+.. +.|.||.|+||||+++.++....
T Consensus 20 g~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344455555555555553 77999999999999998876543
No 481
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.59 E-value=0.0012 Score=44.79 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=21.4
Q ss_pred ceeeeeecccCCCceeEeeeeecee
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+..+.|.||.|+||||+++.++...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999887654
No 482
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.57 E-value=0.0012 Score=48.34 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=22.0
Q ss_pred cceeeeeecccCCCceeEeeeeecee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.--.++|+|..|+|||||++.|.|..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 33478999999999999999998753
No 483
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.57 E-value=0.0012 Score=44.29 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=19.9
Q ss_pred eeeeeecccCCCceeEeeeeecee
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
-.+.|.||.|+|||++.+.++...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 346678999999999999988654
No 484
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.56 E-value=0.0012 Score=44.98 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=21.4
Q ss_pred cceeeeeecccCCCceeEeeeeecee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
+..-+.|.||.|+|||++.+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 44557789999999999999988643
No 485
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.55 E-value=0.0013 Score=45.86 Aligned_cols=28 Identities=18% Similarity=0.017 Sum_probs=23.9
Q ss_pred eeeccceeeeeecccCCCceeEeeeeec
Q psy7220 29 FGVGRGECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 29 l~i~~g~~~~iiG~nGsGKsTll~~l~g 56 (80)
-.+++|..+.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3577888889999999999999887764
No 486
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.53 E-value=0.0013 Score=44.75 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.1
Q ss_pred ceeeeeecccCCCceeEeeeeeceee
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAIK 59 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~~ 59 (80)
+..+.|.||.|+|||+|+++++....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999998876544
No 487
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=95.51 E-value=0.0014 Score=47.41 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=20.4
Q ss_pred cceeeeeecccCCCceeEeeeeece
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
++=.++|+|+.++|||||++.|.+-
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4455899999999999999999875
No 488
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=95.47 E-value=0.0013 Score=45.96 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.0
Q ss_pred eeeeecccCCCceeEeeeeece
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl 57 (80)
.++++|+.++|||||++.|.+.
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5789999999999999999874
No 489
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.41 E-value=0.0012 Score=45.95 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.1
Q ss_pred cceeeeeecccCCCceeEeeeeece
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
++..++++|.+|+|||||++.|.+.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567899999999999999999875
No 490
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.40 E-value=0.0017 Score=48.71 Aligned_cols=26 Identities=46% Similarity=0.523 Sum_probs=22.3
Q ss_pred cceeeeeecccCCCceeEeeeeecee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
++.++.|.|.+||||||+.+.|...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56689999999999999999987644
No 491
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=95.39 E-value=0.0017 Score=44.37 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=18.9
Q ss_pred eeeeecccCCCceeEeeeeec
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~g 56 (80)
.++|+|+.|+|||||++.+.+
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCS
T ss_pred eEEEECCCCccHHHHHHHHhC
Confidence 588999999999999988765
No 492
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.39 E-value=0.0014 Score=43.45 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=18.9
Q ss_pred eeeeeecccCCCceeEeeeeec
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTG 56 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~g 56 (80)
-.+||+|+.||||||+.+.|+-
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 3579999999999999988754
No 493
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.38 E-value=0.0016 Score=44.89 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.0
Q ss_pred cceeeeeecccCCCceeEeeeeece
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
+...+.|.||.|+|||+++++++..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4456789999999999999988764
No 494
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.36 E-value=0.0016 Score=43.33 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=20.1
Q ss_pred ceeeeeecccCCCceeEeeeeece
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
...+.|.||.|+|||++++.+...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999988653
No 495
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=95.36 E-value=0.003 Score=45.02 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=19.3
Q ss_pred eeeeecccCCCceeEeeeeecee
Q psy7220 36 CFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 36 ~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.++|+|+.++|||||++.+.+-.
T Consensus 36 kI~IvG~~~vGKSTLin~L~~~~ 58 (423)
T 3qq5_A 36 YIVVAGRRNVGKSSFMNALVGQN 58 (423)
T ss_dssp EEEEECSCSTTTTTTTTSSCC--
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999988743
No 496
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.35 E-value=0.0018 Score=47.77 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.2
Q ss_pred cceeeeeecccCCCceeEeeeeecee
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
.+-++.|.|.+||||||+.+.|...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999887654
No 497
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.34 E-value=0.0017 Score=43.90 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.4
Q ss_pred ceeeeeecccCCCceeEeeeeece
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
..-+.|.||.|+|||++.++++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 345779999999999999998764
No 498
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.34 E-value=0.0015 Score=44.87 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=20.6
Q ss_pred ceeeeeecccCCCceeEeeeeecee
Q psy7220 34 GECFGLLGLNGAGKTTTFKMLTGAI 58 (80)
Q Consensus 34 g~~~~iiG~nGsGKsTll~~l~gl~ 58 (80)
...+.|.||.|+|||++.+.++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3457799999999999999887644
No 499
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.33 E-value=0.0014 Score=45.77 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.1
Q ss_pred cceeeeeecccCCCceeEeeeeece
Q psy7220 33 RGECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 33 ~g~~~~iiG~nGsGKsTll~~l~gl 57 (80)
++..++++|.+|+|||||++.|.+.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 4567899999999999999999875
No 500
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.31 E-value=0.0014 Score=44.07 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.8
Q ss_pred eeeeeecccCCCceeEeeeeece
Q psy7220 35 ECFGLLGLNGAGKTTTFKMLTGA 57 (80)
Q Consensus 35 ~~~~iiG~nGsGKsTll~~l~gl 57 (80)
..+.|.||.|+|||++++.++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35789999999999999988754
Done!