RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7220
(80 letters)
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the
lipid transporters, subfamily A. The ABCA subfamily
mediates the transport of a variety of lipid compounds.
Mutations of members of ABCA subfamily are associated
with human genetic diseases, such as, familial
high-density lipoprotein (HDL) deficiency, neonatal
surfactant deficiency, degenerative retinopathies, and
congenital keratinization disorders. The ABCA1 protein
is involved in disorders of cholesterol transport and
high-density lipoprotein (HDL) biosynthesis. The ABCA4
(ABCR) protein transports vitamin A derivatives in the
outer segments of photoreceptor cells, and therefore,
performs a crucial step in the visual cycle. The ABCA
genes are not present in yeast. However, evolutionary
studies of ABCA genes indicate that they arose as
transporters that subsequently duplicated and that
certain sets of ABCA genes were lost in different
eukaryotic lineages.
Length = 220
Score = 101 bits (255), Expect = 8e-29
Identities = 38/66 (57%), Positives = 46/66 (69%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
T+ TKPAV+ +S V +GE FGLLG NGAGKTTT KMLTG ++PTSG AY+ +SIR
Sbjct: 9 TYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT 68
Query: 75 SMDLVR 80
R
Sbjct: 69 DRKAAR 74
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid
transport, and lantibiotic immunity. In bacteria and
archaea, these transporters usually include an
ATP-binding protein and one or two integral membrane
proteins. Eukaryotic systems of the ABCA subfamily
display ABC domains that are quite similar to this
family. The ATP-binding domain shows the highest
similarity between all members of the ABC transporter
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 90.1 bits (225), Expect = 1e-24
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
Y K A++ IS V +GE +GLLG NGAGKTT K++ G +KP SG V+ I+ +
Sbjct: 10 YGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPE 69
Query: 78 LVR 80
V+
Sbjct: 70 EVK 72
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 85.1 bits (211), Expect = 8e-22
Identities = 30/60 (50%), Positives = 38/60 (63%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
K A++ +SF V GE FGLLG NGAGKTT K+L G +KPTSG V+ + + VR
Sbjct: 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVR 77
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance
ATP-binding protein. DrrA is the ATP-binding protein
component of a bacterial exporter complex that confers
resistance to the antibiotics daunorubicin and
doxorubicin. In addition to DrrA, the complex includes
an integral membrane protein called DrrB. DrrA belongs
to the ABC family of transporters and shares sequence
and functional similarities with a protein found in
cancer cells called P-glycoprotein. ABC transporters
are a large family of proteins involved in the
transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region in addition to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 220
Score = 78.2 bits (193), Expect = 1e-19
Identities = 36/63 (57%), Positives = 39/63 (61%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
Y AV +SF V RGE FGLLG NGAGKTTT KMLT +KPTSG A V H +
Sbjct: 10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPR 69
Query: 78 LVR 80
VR
Sbjct: 70 EVR 72
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to
NatA. NatA is the ATPase component of a bacterial
ABC-type Na+ transport system called NatAB, which
catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled to proton or K+ uptake.
NatB possess six putative membrane spanning regions at
its C-terminus. In B. subtilis, NatAB is inducible by
agents such as ethanol and protonophores, which lower
the proton-motive force across the membrane. The
closest sequence similarity to NatA is exhibited by
DrrA of the two-component daunorubicin- and
doxorubicin-efflux system. Hence, the functional NatAB
is presumably assembled with two copies of the single
ATP-binding protein and the single integral membrane
protein.
Length = 236
Score = 73.5 bits (181), Expect = 8e-18
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68
Y A+ ISF + +GE G +G NGAGKTTT K+L+G ++PTSG V
Sbjct: 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVA 81
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG
transport system. The ABC transporters belonging to
the YhbG family are similar to members of the
Mj1267_LivG family, which is involved in the transport
of branched-chain amino acids. The genes yhbG and yhbN
are located in a single operon and may function
together in cell envelope during biogenesis. YhbG is
the putative ATP-binding cassette component and YhbN is
the putative periplasmic-binding protein. Depletion of
each gene product leads to growth arrest, irreversible
cell damage and loss of viability in E. coli. The YhbG
homolog (NtrA) is essential in Rhizobium meliloti, a
symbiotic nitrogen-fixing bacterium.
Length = 232
Score = 72.6 bits (179), Expect = 2e-17
Identities = 27/55 (49%), Positives = 33/55 (60%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
Y + VN +S V +GE GLLG NGAGKTTTF M+ G +KP SG + I
Sbjct: 10 YGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDI 64
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 74.7 bits (183), Expect = 2e-17
Identities = 35/66 (53%), Positives = 45/66 (68%)
Query: 14 ETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
+ + + PAV+++ GV GECFGLLG+NGAGKTTTFKMLTG TSG+A V SI
Sbjct: 1945 KVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL 2004
Query: 74 DSMDLV 79
++ V
Sbjct: 2005 TNISDV 2010
Score = 52.7 bits (126), Expect = 8e-10
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
+PAV++++ + LG NGAGKTTT +LTG + PTSG V I ++D VR
Sbjct: 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVR 1002
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug,
daunorubicin. This transport system belong to the
larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP
hydrolysis to substrate translocation. The minimal
configuration of bacterial ABC transport system: an
ATPase or ATP binding subunit; An integral membrane
protein; a hydrophilic polypetpide, which likely
functions as substrate binding protein. In eukaryotes
proteins of similar function include p-gyco proteins,
multidrug resistance protein etc [Transport and binding
proteins, Other].
Length = 302
Score = 73.2 bits (180), Expect = 2e-17
Identities = 30/63 (47%), Positives = 38/63 (60%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
Y AV+ ++F V GE FG LG NGAGKTTT +MLT ++PTSG A V + +
Sbjct: 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPR 62
Query: 78 LVR 80
VR
Sbjct: 63 KVR 65
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins.
Length = 157
Score = 68.8 bits (169), Expect = 2e-16
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+F Y + A++ +S + GE L+G NG+GK+T + + G +KPTSG + I
Sbjct: 6 SFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK 65
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and
bacteriocin and lantibiotic immunity. In eubacteria and
archaea, the typical organization consists of one ABC
and one or two integral membranes. ABC transporters are
a large family of proteins involved in the transport of
a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins.
Length = 210
Score = 69.6 bits (171), Expect = 2e-16
Identities = 26/55 (47%), Positives = 33/55 (60%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+ A++ ISF V +GE FGLLG NGAGKTTT +M+ G I P SG +
Sbjct: 10 FGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPL 64
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 69.9 bits (172), Expect = 3e-16
Identities = 25/46 (54%), Positives = 30/46 (65%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
Y + VN +S V GE GLLG NGAGKTTTF M+ G ++P SG
Sbjct: 14 YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain
of the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 68.4 bits (168), Expect = 5e-16
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
Y K ++ IS V +GE +G LG NGAGKTTT K++ G IKP SG
Sbjct: 10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG 55
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system,
ATPase component [General function prediction only].
Length = 325
Score = 68.9 bits (169), Expect = 1e-15
Identities = 27/53 (50%), Positives = 33/53 (62%)
Query: 11 SHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+H + AV ISF + +GE G LG NGAGK+TT KMLTG + PTSG
Sbjct: 27 NHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG 79
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component
of iron-siderophores, vitamin B12 and hemin
transporters and related proteins. ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 67.1 bits (165), Expect = 1e-15
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+ Y + ++ +S + GE G+LG NGAGK+T K L G +KP+SG + +
Sbjct: 6 SVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS 65
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system,
ATPase component [General function prediction only].
Length = 300
Score = 68.5 bits (168), Expect = 1e-15
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+ K AV+ ISF V GE FGLLG NGAGKTTTF+M+ G ++PT G
Sbjct: 12 FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEG 57
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in
the transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The
branched-chain amino acid transporter from E. coli
comprises a heterodimer of ABCs (LivF and LivG), a
heterodimer of six-helix TM domains (LivM and LivH),
and one of two alternative soluble periplasmic
substrate binding proteins (LivK or LivJ).
Length = 236
Score = 67.1 bits (165), Expect = 3e-15
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
A++ +SF V GE GL+G NGAGKTT F +++G ++PTSG
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSG 55
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 66.8 bits (163), Expect = 8e-15
Identities = 28/63 (44%), Positives = 35/63 (55%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
Y K VN +SF V GECFGLLG NGAGK+T +M+ G P +G V+ +
Sbjct: 51 YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARAR 110
Query: 78 LVR 80
L R
Sbjct: 111 LAR 113
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 66.4 bits (162), Expect = 9e-15
Identities = 28/46 (60%), Positives = 32/46 (69%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
Y K V+ +SF V RGECFGLLG NGAGKTTT +ML G P +G
Sbjct: 17 YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG 62
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+
extrusion without mechanically coupled proton or K+
uptake. NatB possess six putative membrane spanning
regions at its C-terminus. In B. subtilis, NatAB is
inducible by agents such as ethanol and protonophores,
which lower the proton-motive force across the
membrane. The closest sequence similarity to NatA is
exhibited by DrrA of the two-component daunorubicin-
and doxorubicin-efflux system. Hence, the functional
NatAB is presumably assembled with two copies of a
single ATP-binding protein and a single integral
membrane protein.
Length = 218
Score = 64.7 bits (158), Expect = 1e-14
Identities = 26/45 (57%), Positives = 32/45 (71%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
AV+ +SF V GE GLLG NGAGKTTT +ML G ++P +G A V
Sbjct: 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV 64
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the
uptake of monosaccharides, such as pentoses (such as
xylose, arabinose, and ribose) and hexoses (such as
xylose, arabinose, and ribose), that cannot be broken
down to simple sugars by hydrolysis. Pentoses include
xylose, arabinose, and ribose. Important hexoses
include glucose, galactose, and fructose. In members of
the Carb_monos family, the single hydrophobic gene
product forms a homodimer while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter.
Length = 163
Score = 63.6 bits (156), Expect = 1e-14
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----VMNHSIRDSM 76
A++ +S V RGE LLG NGAGK+T K+L+G KP SG V S RD+
Sbjct: 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDAR 73
Query: 77 DL 78
Sbjct: 74 RA 75
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes
phylum (previously
Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC
transporter ATP-binding protein (pfam00005) linked to a
type of rapid surface gliding motility found in certain
Bacteroidetes, such as Flavobacterium johnsoniae and
Cytophaga hutchinsonii. Knockouts of GldA abolish the
gliding phenotype. Gliding motility appears closely
linked to chitin utilization in the model species
Flavobacterium johnsoniae. Bacteroidetes with members
of this protein family appear to have all of the genes
associated with gliding motility.
Length = 301
Score = 65.2 bits (159), Expect = 2e-14
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
Y T+ A++++SF +G G LG NGAGK+TT K++TG + P SG+ V +
Sbjct: 12 YGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV 66
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 64.5 bits (158), Expect = 3e-14
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
AV+ +SF + GE GL+G +G GK+T +++ G +PTSG I
Sbjct: 24 RYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK 79
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 64.5 bits (158), Expect = 3e-14
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+F Y KP ++ +SF + +GE G+LG NG+GK+T K L G +KP SG + I
Sbjct: 9 SFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIAS 68
Query: 75 --SMDLVR 80
+L +
Sbjct: 69 LSPKELAK 76
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 64.0 bits (156), Expect = 4e-14
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
AV +SF GE GLLG NGAGKTT +M+ + P SG + D +D VR
Sbjct: 17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI------DGVDTVR 68
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 63.8 bits (156), Expect = 5e-14
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
A+ ISF + +GE G++G NGAGK+T K++ G KPTSG V
Sbjct: 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV 86
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic
protection ABC transporter, ATP-binding subunit. Model
TIGR03731 represents the family of all lantibiotics
related to gallidermin, including epidermin, mutatin,
and nisin. This protein family describes the
ATP-binding subunit of a gallidermin/epidermin class
lantibiotic protection transporter. It is largely
restricted to gallidermin-family lantibiotic
biosynthesis and export cassettes, but also occurs in
orphan transporter cassettes in species that lack
candidate lantibiotic precursor and synthetase genes.
Length = 223
Score = 62.4 bits (152), Expect = 1e-13
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
AVN IS V + +GLLG NGAGK+T KM+TG ++PTSG H
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH 62
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 62.7 bits (153), Expect = 1e-13
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
+F Y + A++ +SF V G LLG NGAGK+T F +LT G V H +R
Sbjct: 8 SFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLR 66
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 61.8 bits (151), Expect = 3e-13
Identities = 25/50 (50%), Positives = 30/50 (60%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
AVN +S V GE GL+G NGAGKTT F ++TG KP+SG I
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDI 68
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with
NodJ to export a nodulation signal molecule. This model
does not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 62.3 bits (151), Expect = 3e-13
Identities = 30/63 (47%), Positives = 36/63 (57%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
Y K VN +SF + RGECFGLLG NGAGK+T +ML G I P G V+ +
Sbjct: 14 YGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRAR 73
Query: 78 LVR 80
L R
Sbjct: 74 LAR 76
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and
a cytoplasmic membrane protein MPA2.
Length = 224
Score = 61.0 bits (149), Expect = 4e-13
Identities = 24/64 (37%), Positives = 32/64 (50%)
Query: 5 SLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
SL+ + A+ +SF V RGE GL+G NGAGK+T ++L G P SG
Sbjct: 19 SLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGT 78
Query: 65 AYVM 68
V
Sbjct: 79 VTVR 82
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain
I of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. This ABC transport
system of the CbiMNQO family is involved in cobalt
transport in association with the cobalamin (vitamin
B12) biosynthetic pathways. Most of cobalt (Cbi)
transport systems possess a separate CbiN component,
the cobalt-binding periplasmic protein, and they are
encoded by the conserved gene cluster cbiMNQO. Both the
CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems.
Length = 211
Score = 59.8 bits (146), Expect = 9e-13
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
++P +PA++ IS + +GE ++G NG+GK+T ++L G + PTSG V +
Sbjct: 8 SYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTK 67
Query: 75 S 75
Sbjct: 68 L 68
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 61.0 bits (149), Expect = 9e-13
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-----AYVMNHSIRDSM 76
A++ +S V GE LLG NGAGK+T K+L+G P SG V S RD++
Sbjct: 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81
Query: 77 DL 78
Sbjct: 82 AA 83
Score = 42.9 bits (102), Expect = 2e-06
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----V 67
LE V +SF V GE G+ GL GAG+T + L GA +SG V
Sbjct: 264 LEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPV 323
Query: 68 MNHSIRDSMDL 78
S RD++
Sbjct: 324 RIRSPRDAIKA 334
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA
ternary complex to the ribosomal A site by facilitated
release of the deacylated tRNA from the E site. The
reaction requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 57.8 bits (141), Expect = 2e-12
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+ Y K + IS + G+ GL+G NGAGK+T K++ G ++P G
Sbjct: 7 SKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG 55
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the
SitABCD transporter of Shigella flexneri. Moreover
other uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 59.1 bits (144), Expect = 2e-12
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
T Y P + +SF V GE ++G NGAGK+T K + G +KPTSG+ V
Sbjct: 6 TVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 211
Score = 58.7 bits (143), Expect = 2e-12
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
T Y K A++ +S +G G +GLLG NGAGKTT ++L P+SG + +
Sbjct: 7 TKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK 65
Query: 75 SMDLVR 80
+R
Sbjct: 66 QPQKLR 71
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139)
is part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins
involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules.
Length = 222
Score = 58.6 bits (143), Expect = 3e-12
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 11 SHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+L Y + +S V GE LLG NGAGKTT K + G + P SG
Sbjct: 4 ENLNAG-YGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG 55
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 58.4 bits (142), Expect = 4e-12
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
T Y +P + IS V +GE L+G NGAGK+T K + G +KP+SG + +R
Sbjct: 11 TVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRK 70
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport
systems, ATPase components [Amino acid transport and
metabolism].
Length = 309
Score = 58.8 bits (143), Expect = 4e-12
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+ Y K AV+ ++ + GE L+G +G+GKTTT KM+ I+PTSG + I D
Sbjct: 8 SKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISD 67
Query: 75 SMDLVR 80
+D V
Sbjct: 68 -LDPVE 72
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 58.3 bits (141), Expect = 8e-12
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
AV+ +S V GE FG++G +GAGKTT K++ G ++PTSG V
Sbjct: 299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNV 343
Score = 40.2 bits (94), Expect = 2e-05
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSG 63
T +D K + ISF + GE G+LG +GAGK+ +L G +PTSG
Sbjct: 7 TKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 56.9 bits (138), Expect = 1e-11
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 15 TFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+F Y K A+ +S + +GE L+G NG+GK+T K+L G +KPTSG
Sbjct: 10 SFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG 59
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with
duplicated ATPase domains [General function prediction
only].
Length = 530
Score = 57.3 bits (139), Expect = 2e-11
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
Y +P + +S + GE GL+G NGAGK+T K+L G ++P SG
Sbjct: 13 YGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59
Score = 55.7 bits (135), Expect = 6e-11
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+ + +SF + RG+ ++G NGAGK+T K+L G + P SG
Sbjct: 333 GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG 377
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 56.2 bits (136), Expect = 3e-11
Identities = 22/41 (53%), Positives = 25/41 (60%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
AVN ++ V E L+G NGAGKTT F LTG KPT G
Sbjct: 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG 60
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 56.0 bits (136), Expect = 5e-11
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
AV+ +SF + GE GL+G +G+GK+T ++L G + P+SG+
Sbjct: 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQ 353
Score = 39.9 bits (94), Expect = 3e-05
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
PAV +SF V GE G++G +G+GK+T L G
Sbjct: 21 RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMG 57
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 55.6 bits (135), Expect = 5e-11
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
Y A+ +S V RGE LLG NGAGKTT K + G ++P SG
Sbjct: 13 YGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSG 58
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of
the carbohydrate and solute transporters-like. This
family is comprised of proteins involved in the
transport of apparently unrelated solutes and proteins
specific for di- and oligosaccharides and polyols. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 213
Score = 55.2 bits (134), Expect = 6e-11
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
Y + A++ +S V GE LLG +G GKTT +++ G +P SG
Sbjct: 10 YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSG 55
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two
domains with the N-terminal domain containing the
ATPase activity and the residues required for
homodimerization with PotA and heterdimerization with
PotB. ABC transporters are a large family of proteins
involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 232
Score = 54.9 bits (133), Expect = 7e-11
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
Y A++ +S + GE F LLG +G GKTT +++ G PTSG + I
Sbjct: 10 YGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI 64
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain
of nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein
NikA, two integral membrane components (NikB and NikC),
and two ATPase (NikD and NikE). The NikABCDE
transporter is synthesized under anaerobic conditions
to meet the increased demand for nickel resulting from
hydrogenase synthesis. The molecular mechanism of
nickel uptake in many bacteria and most archaea is not
known. Many other members of this ABC family are also
involved in the uptake of dipeptides and oligopeptides.
The oligopeptide transport system (Opp) is a
five-component ABC transport composed of a
membrane-anchored substrate binding proteins (SRP),
OppA, two transmembrane proteins, OppB and OppC, and
two ATP-binding domains, OppD and OppF.
Length = 228
Score = 54.8 bits (133), Expect = 8e-11
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
A++ +SF + +GE GL+G +G+GK+T + + G +KPTSG+ +
Sbjct: 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDL 69
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 55.2 bits (134), Expect = 9e-11
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
A + +S V +GE LLG NGAGK+T K+L G +P SG V
Sbjct: 19 ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRV 63
Score = 35.6 bits (83), Expect = 8e-04
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
L AV +SF V GE G+ G+ G G++ + ++G KP SG +
Sbjct: 262 DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKD 321
Query: 72 IR 73
+
Sbjct: 322 VL 323
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system
belong to the larger ATP-Binding Cassette (ABC)
transporter superfamily. The characteristic feature of
these transporter is the obligatory coupling of ATP
hydrolysis to substrate translocation. The minimal
configuration of bacterial ABC transport system: an
ATPase or ATP binding subunit; An integral membrane
protein; a hydrophilic polypetpide, which likely
functions as substrate binding protein. Functionally,
this transport system is involved in osmoregulation.
Under conditions of stress, the organism recruits these
transport system to accumulate glycine betaine and
other solutes which offer osmo-protection. It has been
demonstrated that glycine betaine uptake is accompanied
by symport with sodium ions. The locus has been named
variously as proU or opuA. A gene library from L.lactis
functionally complements an E.coli proU mutant. The
comlementing locus is similar to a opuA locus in
B.sutlis. This clarifies the differences in
nomenclature [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 363
Score = 55.2 bits (133), Expect = 1e-10
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
K VN + +GE F ++GL+G+GK+TT +ML I+PT+G ++
Sbjct: 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFI 52
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and
metabolism].
Length = 352
Score = 55.0 bits (133), Expect = 1e-10
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+ AV+ IS + +GE LLG +G GKTT +M+ G +P+SG
Sbjct: 15 FGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 54.6 bits (132), Expect = 1e-10
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
VN +S V GE F ++GL+G+GK+T + + I+PTSG +
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLI 83
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 54.2 bits (131), Expect = 2e-10
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
A+N +S + RGE G++G +G+GK+T ++L G KP+SG+ +
Sbjct: 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILL 66
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 54.2 bits (131), Expect = 2e-10
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
+ K + +S+ V GE + ++G NGAGKTT +LTG P+SG+ ++
Sbjct: 41 RNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFG 96
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 54.1 bits (131), Expect = 2e-10
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
T+P + K A+ +S + GE L+G +GAGK+T + L G ++PTSG+ + I
Sbjct: 9 TYP-NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDIN 66
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 54.2 bits (131), Expect = 3e-10
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 11/69 (15%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN---------AYVM 68
+ K ++ +SF + G G++G NGAGK+T F+M+TG +P SG AYV
Sbjct: 332 FGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYV- 390
Query: 69 NHSIRDSMD 77
RD++D
Sbjct: 391 -DQSRDALD 398
Score = 35.7 bits (83), Expect = 8e-04
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 38 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68
G+LGLNGAGK+T +++ G K +G A
Sbjct: 35 GVLGLNGAGKSTLLRIMAGVDKEFNGEARPA 65
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They
belong to the subfamily C of the ATP-binding cassette
(ABC) superfamily of transport proteins. The ABCC
subfamily contains transporters with a diverse
functional spectrum that includes ion transport, cell
surface receptor, and toxin secretion activities. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains, each composed of six
transmembrane (TM) helices, and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 171
Score = 52.4 bits (127), Expect = 3e-10
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 15 TFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+F Y KP + +S + GE ++G +G+GK+T K+L PTSG + +
Sbjct: 7 SFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDL 66
Query: 73 RD 74
RD
Sbjct: 67 RD 68
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 53.5 bits (129), Expect = 4e-10
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 15 TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+F Y A+ +SF + GE +LG NG+GK+T K+LTG +KP SG + +I
Sbjct: 14 SFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI 73
Query: 73 -RDSMDLVR 80
++++ +R
Sbjct: 74 SKENLKEIR 82
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 53.2 bits (129), Expect = 5e-10
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 28 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN---------AYVMNHSIRDSMD 77
SF + G G++G NGAGK+T FKM+TG +P SG AYV RD++D
Sbjct: 344 SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS--RDALD 400
Score = 37.4 bits (88), Expect = 2e-04
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 38 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68
G+LGLNGAGK+T +++ G K G A
Sbjct: 37 GVLGLNGAGKSTLLRIMAGVDKEFEGEARPA 67
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter
that serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the
transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition, to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 242
Score = 52.7 bits (127), Expect = 6e-10
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 15 TFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
T Y K AVN ++ + +GE L+G +G+GKTTT KM+ I+PTSG ++ IR
Sbjct: 7 TKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIR 66
Query: 74 DSMDLVR 80
+ D V
Sbjct: 67 E-QDPVE 72
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 52.2 bits (126), Expect = 8e-10
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
A+N +S V GE ++G NGAGKTT ++TG +P G+ +
Sbjct: 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLT 67
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 52.6 bits (127), Expect = 9e-10
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR- 73
+P PA++ +S + GE ++G G+GK+T K+L G +PT G+ + IR
Sbjct: 472 AYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531
Query: 74 -DSMDLVR 80
D DL R
Sbjct: 532 IDPADLRR 539
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 52.3 bits (126), Expect = 1e-09
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DS 75
P KP + ISF + GE G++G +G+GK+T ++L G PTSG S+R D
Sbjct: 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG-------SVRLDG 397
Query: 76 MDL 78
DL
Sbjct: 398 ADL 400
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to
the transporter as ATP is hydrolyzed.
Length = 213
Score = 51.5 bits (124), Expect = 1e-09
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
+ A++ ++ + GE LLG +G GKTTT +M+ G +PTSG Y+
Sbjct: 10 FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 52.0 bits (125), Expect = 1e-09
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
L+T D ++P T+ A+ I+F +GE LLG NGAGK+T F G +KPTSG
Sbjct: 2 LETRDLKY-SYPDGTE-ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSG 57
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 51.4 bits (124), Expect = 2e-09
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69
+ + I+ V +GE +LG +G GK+T +++ G KPTSG +
Sbjct: 13 FGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDG 64
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport
and binding proteins, Cations and iron carrying
compounds].
Length = 190
Score = 50.9 bits (122), Expect = 2e-09
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+P + + ++F RGE LLG NGAGK+T L G ++P SG
Sbjct: 1 YPGGPE-VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSG 47
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase
components [Carbohydrate transport and metabolism].
Length = 338
Score = 51.5 bits (124), Expect = 2e-09
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+ + + ++ + GE LLG +G GK+T +M+ G +PTSG + + D
Sbjct: 13 FGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD 69
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 51.3 bits (124), Expect = 2e-09
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+ ++ +S + GE +LG NGAGK+T + L+G + P SG + + D
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAD 68
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent)
systems that are largely represented in archaea and
eubacteria and are primarily involved in scavenging
solutes from the environment. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins.
Length = 178
Score = 50.6 bits (122), Expect = 2e-09
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
Y K +N +S + GE LLG +G+GK+T + + G +P SG+ +
Sbjct: 10 YGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILI 59
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain
of bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria
are produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated
ATP-binding cassette (ABC) transporter is responsible
for the proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 50.7 bits (122), Expect = 3e-09
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
++P PA++ +S + GE ++G G+GK+T K+L G KPTSG+ + IR
Sbjct: 11 SYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR 69
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 50.9 bits (122), Expect = 3e-09
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 15 TFPYD---TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
TF Y K +N +SF V +GE ++G NG+GK+TT +++ G ++ SG +
Sbjct: 11 TFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD 69
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of
the transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides,
while the LolCDE system is not a transporter at all. An
FtsE null mutants showed filamentous growth and
appeared viable on high salt medium only, indicating a
role for FtsE in cell division and/or salt transport.
The LolCDE complex catalyzes the release of
lipoproteins from the cytoplasmic membrane prior to
their targeting to the outer membrane.
Length = 218
Score = 50.2 bits (121), Expect = 4e-09
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
A+ +S + +GE ++G +G+GK+T +L G +PTSG V I
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISK 70
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 49.9 bits (119), Expect = 5e-09
Identities = 23/58 (39%), Positives = 30/58 (51%)
Query: 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
F Y +P + QISF + G L G NGAGKTT K++ G + P G SI+
Sbjct: 9 FDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK 66
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 50.4 bits (121), Expect = 5e-09
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+P A+ +SF V GE ++G NG+GK+T K+L G + P +G
Sbjct: 14 RYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 50.3 bits (121), Expect = 5e-09
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
A++ ISF G+ L+G NGAGK+T K+L+G +P +G+
Sbjct: 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS 60
Score = 44.5 bits (106), Expect = 6e-07
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 22 PAVNQ-ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
P + + ISF V GE GL GL GAG++ K+L GA + T+G
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAG 308
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette
transport system involved in resistant to organic
solvents. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 235
Score = 49.8 bits (120), Expect = 5e-09
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
T + + + + V RGE ++G +G+GK+T +++ G ++P SG + I
Sbjct: 7 TKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISG 66
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 50.3 bits (121), Expect = 6e-09
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+ D P + +S + GE ++G +G+GK+T K+L G KP G + + D
Sbjct: 480 RYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLND 539
Query: 75 -SMDLVR 80
+ +R
Sbjct: 540 IDLASLR 546
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein
PhnL. Members of this family are the PhnL protein of
C-P lyase systems for utilization of phosphonates.
These systems resemble phosphonatase-based systems in
having a three component ABC transporter, where
TIGR01097 is the permease, TIGR01098 is the
phosphonates binding protein, and TIGR02315 is the
ATP-binding cassette (ABC) protein. They differ,
however, in having, typically, ten or more additional
genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a
transporter per se.
Length = 224
Score = 49.7 bits (119), Expect = 7e-09
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
P + +S V GEC L G +GAGK+T K L P SG V H +DL +
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV-RH-EGAWVDLAQ 78
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain
of the nitrate and sulfonate transporters. NrtD and
SsuB are the ATP-binding subunits of the bacterial
ABC-type nitrate and sulfonate transport systems,
respectively. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 220
Score = 49.4 bits (119), Expect = 8e-09
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
A+ IS V GE L+G +G GK+T +++ G +PTSG V +
Sbjct: 16 AVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG 70
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 49.6 bits (119), Expect = 8e-09
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
T+P A+ ++ + +GE ++G +GAGK+T + L G + PTSG I
Sbjct: 12 TYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQI 68
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 49.8 bits (119), Expect = 8e-09
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
T +D + AV+ +S + +GE F LLG +G GK+T +ML G +PT+G
Sbjct: 26 TKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAG 74
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 49.5 bits (119), Expect = 1e-08
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVR 80
AV+ +SF + +GE G++G +G+GK+ K + G + NA ++ I D DL+
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK--PNARIVGGEILFDGKDLLS 76
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 49.3 bits (118), Expect = 1e-08
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DS 75
P KP + ISF + GE ++G +G+GK+T +++ G PTSG S+R D
Sbjct: 327 PGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG-------SVRLDG 379
Query: 76 MDL 78
DL
Sbjct: 380 ADL 382
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 49.0 bits (117), Expect = 1e-08
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
P + +S + GE GLLG +G GK+T ++L G KP G
Sbjct: 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGT 67
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 48.9 bits (117), Expect = 2e-08
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 78
K A++ ++ V +GE +LG NG+GK+T K + + P+ G YV D +L
Sbjct: 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL 80
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 48.7 bits (116), Expect = 2e-08
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
AV +SF + G+ ++G NG+GK+T KML G I+PTSG + +H
Sbjct: 28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDH 75
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 48.8 bits (117), Expect = 2e-08
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 5 SLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
L+ V T A++ +S + +GE FG++G +GAGK+T +++ +PTSG+
Sbjct: 3 ELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGS 62
Query: 65 AYVMNHSI 72
+V +
Sbjct: 63 VFVDGQDL 70
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter
ATP-binding protein; Provisional.
Length = 241
Score = 48.4 bits (115), Expect = 2e-08
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
Y + V +S V GE GLLG NGAGKTTTF M+ G + +GN + + I
Sbjct: 13 YKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDI 67
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 48.5 bits (116), Expect = 2e-08
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
VN S V GE F ++GL+G+GK+T ++L I+PT G V D D+ +
Sbjct: 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILV------DGKDIAK 94
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate
binding protein. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 233
Score = 48.3 bits (116), Expect = 2e-08
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
A+ +S V +GE FG++G +GAGK+T + + G +PTSG+ V +
Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDL 69
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 48.6 bits (116), Expect = 2e-08
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
A+ ++ V GE LLG NGAGK+T K+L+G +PT G + N +
Sbjct: 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN 68
Score = 37.5 bits (87), Expect = 2e-04
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
D K V ISF V RGE G GL G+G+T L G K G +
Sbjct: 274 RDRK-KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems,
ATPase component [Inorganic ion transport and
metabolism].
Length = 345
Score = 48.5 bits (116), Expect = 2e-08
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
+ A++ IS + GE LLG +GAGK+T +++ G P +G + + D
Sbjct: 12 FGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDV 69
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number
of bacterial species have operons, typically about 14
genes in size, with genes for ATP-dependent transport
of phosphonates, degradation, and regulation of the
expression of the system. Members of this protein
family are the ATP-binding cassette component of
tripartite ABC transporters of phosphonates [Transport
and binding proteins, Anions].
Length = 243
Score = 48.1 bits (115), Expect = 3e-08
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+P + A+ I+ + GE ++G +GAGK+T + + ++P+SG+ + I
Sbjct: 10 VYPNGKQ-ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITK 68
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of
CydCD, subfamily C. The CYD subfamily implicated in
cytochrome bd biogenesis. The CydC and CydD proteins
are important for the formation of cytochrome bd
terminal oxidase of E. coli and it has been proposed
that they were necessary for biosynthesis of the
cytochrome bd quinol oxidase and for periplasmic c-type
cytochromes. CydCD were proposed to determine a
heterooligomeric complex important for heme export into
the periplasm or to be involved in the maintenance of
the proper redox state of the periplasmic space. In
Bacillus subtilis, the absence of CydCD does not affect
the presence of halo-cytochrome c in the membrane and
this observation suggests that CydCD proteins are not
involved in the export of heme in this organism.
Length = 178
Score = 47.3 bits (113), Expect = 3e-08
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
++P + + +S + +GE LLG +G+GK+T ++LTG +KP G + + D
Sbjct: 9 SYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSD 68
Query: 75 SMDLVR 80
+
Sbjct: 69 LEKALS 74
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system,
ATPase component [General function prediction only].
Length = 249
Score = 48.1 bits (115), Expect = 3e-08
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
A+N +SF V GE L+G NGAGKTT ++TG +P G DL +
Sbjct: 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLF-----DGDTDLTK 72
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 48.2 bits (115), Expect = 3e-08
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 14 ETFPYDTK-------PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
+TF Y T AV +SF + G+ ++G NG+GK+T KML G I+PTSG
Sbjct: 12 KTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELL 71
Query: 67 VMNH 70
+ +H
Sbjct: 72 IDDH 75
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 47.6 bits (114), Expect = 3e-08
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+ A+ +SF + +GE L G +GAGK+T K++ G +PT G V H +
Sbjct: 13 GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDL 66
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 47.5 bits (113), Expect = 5e-08
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69
T+P KPA+N ISF + RG L+G NG+GK+T K++ G + P +
Sbjct: 14 TYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKIT 68
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 47.3 bits (113), Expect = 6e-08
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
P++ K A++ ++ + GE GL+G G+GK+T + L G +KPTSG + I D
Sbjct: 17 PFEKK-ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD 73
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 47.3 bits (113), Expect = 7e-08
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
D K V S V RG+ L+G NG GKTT K++ G ++ SG +
Sbjct: 329 IDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC 378
Score = 30.3 bits (69), Expect = 0.073
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58
+ E L+G NGAGK+T K+L G +
Sbjct: 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEV 53
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 47.0 bits (112), Expect = 7e-08
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
P + +S V GEC L G +G+GK+T + L P G V
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILV 70
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins.
Length = 234
Score = 46.8 bits (112), Expect = 7e-08
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 15 TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
TF Y D P + IS + GE L+G +G+GK+T ++ SG + H +
Sbjct: 7 TFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV 66
Query: 73 RD 74
RD
Sbjct: 67 RD 68
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and
an outer membrane protein (OMP). For the HlyA
transporter complex, HlyB (ABC transporter) and HlyD
(MFP) reside in the inner membrane of E. coli. The OMP
component is TolC, which is thought to interact with
the MFP to form a continuous channel across the
periplasm from the cytoplasm to the exterior. HlyB
belongs to the family of ABC transporters, which are
ubiquitous, ATP-dependent transmembrane pumps or
channels. The spectrum of transport substrates ranges
from inorganic ions, nutrients such as amino acids,
sugars, or peptides, hydrophobic drugs, to large
polypeptides, such as HlyA.
Length = 173
Score = 46.4 bits (111), Expect = 8e-08
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
P P + +SF + GE ++G +G+GK+T +++ G ++PTSG
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG 57
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 46.7 bits (112), Expect = 8e-08
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
Y + +S V +GE +LG NG GKTT K L G + SG
Sbjct: 10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG 55
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the
uptake of monosaccharides, such as pentoses (such as
xylose, arabinose, and ribose) and hexoses (such as
xylose, arabinose, and ribose), that cannot be broken
down to simple sugars by hydrolysis. In members of
Carb_Monos family the single hydrophobic gene product
forms a homodimer, while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it
is assumed that two copies of the ABC domains are
present in the assembled transporter.
Length = 182
Score = 46.3 bits (111), Expect = 9e-08
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
K AV +SF V GE G+ GL G G+T + L G P SG + +
Sbjct: 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVT 65
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 46.4 bits (111), Expect = 1e-07
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
KP IS G G +GL+G NG GK+T K+L G ++P++GN
Sbjct: 14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGN 57
Score = 43.0 bits (102), Expect = 2e-06
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
T +D P ++ + GE ++G NG GKTT + L G ++P SG
Sbjct: 326 TKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG 374
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 46.3 bits (110), Expect = 1e-07
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+K A+N I+F R ++G NGAGK+T F+ G +KPTSG+ + I
Sbjct: 16 SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPI 68
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the
ATP-binding cassette component of cobalt transport
system. Domain II of the ABC component of a cobalt
transport family found in bacteria, archaea, and
eukaryota. The transition metal cobalt is an essential
component of many enzymes and must be transported into
cells in appropriate amounts when needed. The CbiMNQO
family ABC transport system is involved in cobalt
transport in association with the cobalamin (vitamin
B12) biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are
encoded by the conserved gene cluster cbiMNQO. Both the
CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems.
Length = 205
Score = 46.1 bits (110), Expect = 1e-07
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+S + GE L G NGAGKTT K+L G IK +SG
Sbjct: 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG 55
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 46.2 bits (110), Expect = 1e-07
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
T+P T A++ I+ + GE L+G +GAGK+T K++ PTSG
Sbjct: 9 TYPNGT-AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSG 56
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 46.1 bits (110), Expect = 1e-07
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
GE G+LG NG GKTT K+L G IKP G
Sbjct: 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEG 396
Score = 40.0 bits (94), Expect = 2e-05
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
G+ G+LG NG GK+T K+L G +KP G
Sbjct: 99 PGKVVGILGPNGIGKSTALKILAGELKPNLGR 130
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 46.0 bits (109), Expect = 2e-07
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
A++ IS G+ GL+G+NG+GK+T ++ G++ PT G
Sbjct: 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGK 80
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 45.6 bits (109), Expect = 2e-07
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
GE G++G NG GKTT K+L G +KP G
Sbjct: 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGE 395
Score = 40.9 bits (97), Expect = 1e-05
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
G+ G+LG NG GKTT K+L+G + P G+
Sbjct: 98 EGKVTGILGPNGIGKTTAVKILSGELIPNLGD 129
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 45.4 bits (108), Expect = 2e-07
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
K A+N +S + G+ ++G NGAGK+T + G +KPTSG
Sbjct: 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 45.5 bits (108), Expect = 3e-07
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
E G+LG NG GKTT KML G +KP G+ + ++
Sbjct: 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV 63
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 45.4 bits (108), Expect = 3e-07
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+ P VN +SF + +GE G+ GL GAG+T K+L GA+ TSG + H +
Sbjct: 264 SGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEV 316
Score = 33.4 bits (77), Expect = 0.005
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
A++ + V G L+G NGAGK+T K+LTG
Sbjct: 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTG 52
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 45.3 bits (108), Expect = 3e-07
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
A++ +S V GE L G NGAGK+T K+L+G
Sbjct: 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG 53
Score = 37.6 bits (88), Expect = 2e-04
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 57
V+ +SF + RGE G+ GL GAG+T + L GA
Sbjct: 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA 311
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 45.1 bits (107), Expect = 3e-07
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 15 TFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
+F Y K P + ISF + GE ++G +G+GK+T K+L PTSG + IR
Sbjct: 335 SFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIR 394
Query: 74 D 74
D
Sbjct: 395 D 395
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 45.0 bits (107), Expect = 5e-07
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 15 TFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
TF Y D +V I+ + RGE L+G NG+GK+T +LTG +P SG +
Sbjct: 329 TFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site.
In a number of species, the ftsEX gene pair is located
next to FtsY, the signal recognition particle-docking
protein [Cellular processes, Cell division].
Length = 214
Score = 44.2 bits (105), Expect = 6e-07
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
A++ +S + +GE L G +GAGKTT K+L GA+ P+ G + +
Sbjct: 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDV 66
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance
to organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 44.1 bits (105), Expect = 6e-07
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
T + + ++ + V RGE +LG +G+GK+T +++ G ++P G + I
Sbjct: 15 TKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQ 74
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC
transporter, ATP-binding protein. This ABC transporter
ATP-binding protein is found in a number of genomes in
operon-like contexts strongly suggesting a substrate
specificity for 2-aminoethylphosphonate (2-AEP). The
characterized PhnSTUV system is absent in the genomes
in which this system is found. These genomes encode
systems for the catabolism of 2-AEP, making the need
for a 2-AEP-specific transporter likely [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 353
Score = 44.3 bits (105), Expect = 6e-07
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 4 TSLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
S+ + F A+ IS V +GE LLG +G GKTT +++ G + T+G
Sbjct: 5 LSIDNIRKRFGAFT-----ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG 59
Query: 64 NAYVMNHSI 72
Y I
Sbjct: 60 TIYQGGRDI 68
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 44.3 bits (105), Expect = 7e-07
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+P +PA++ IS + GE L+G +G+GK+T ++ +P SG + H + D
Sbjct: 339 RYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLAD 398
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 549
Score = 44.5 bits (105), Expect = 7e-07
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
A+N ISF V GE G++GLNG+GK+T ++ G P G
Sbjct: 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG 79
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 44.2 bits (105), Expect = 8e-07
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 15 TFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+F YD ++ V +SF G+ ++G GAGK+T +L P SG
Sbjct: 341 SFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to
the molybdate transporter. Archaeal protein closely
related to ModC. ModC is an ABC-type transporter and
the ATPase component of a molybdate transport system
that also includes the periplasmic binding protein ModA
and the membrane protein ModB. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins.
Length = 235
Score = 43.9 bits (104), Expect = 9e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+S V RG+ F +LG G+GK+ + + G IKP SG
Sbjct: 18 VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSG 54
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 44.1 bits (104), Expect = 9e-07
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
D A+ I+ + +GE +LG NGAGK+T F+ L G +KP+SG
Sbjct: 17 DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSG 61
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 259
Score = 43.9 bits (104), Expect = 1e-06
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
++ +S + GE +LG NGAGK+T K L+G + P SG + +
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL 65
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 43.9 bits (104), Expect = 1e-06
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 15 TFPYDTK--PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
+F Y + A+ + + +GE +LG +G+GK+T ++L GA P G+
Sbjct: 343 SFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGS 394
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 43.4 bits (103), Expect = 1e-06
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+P +PA+ +SF V GE L+G +GAGK+T +L G + PT G
Sbjct: 330 AYP-GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEG 377
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 43.4 bits (103), Expect = 2e-06
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
+D K ++ + + GE LLG +G GKTT +++ G P SG
Sbjct: 24 FDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 43.2 bits (102), Expect = 2e-06
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
Y + ++ I + G GLLG NGAGK+T K+L G + P SG
Sbjct: 322 YGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSG 367
Score = 30.1 bits (68), Expect = 0.077
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65
G+ GL+G NG GK+T +L I G+
Sbjct: 27 GQKVGLVGKNGCGKSTLLALLKNEISADGGSY 58
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system,
ATPase component [General function prediction only].
Length = 223
Score = 42.9 bits (101), Expect = 2e-06
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
+N IS V GE + G +G GK+T K++ I PTSG
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 43.3 bits (103), Expect = 2e-06
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 15 TFPYDTKP--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
FP + A+N +S + GE FG++G +GAGK+T + + +PTSG V
Sbjct: 10 VFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLV 64
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 43.1 bits (101), Expect = 2e-06
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 13 LETFPY---DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
LE Y D PA+ I+ + +GE G++G NG+GK+T L G ++P G V
Sbjct: 4 LENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain
of the sulfate transporter. Part of the ABC
transporter complex cysAWTP involved in sulfate import.
Responsible for energy coupling to the transport
system. The complex is composed of two ATP-binding
proteins (cysA), two transmembrane proteins (cysT and
cysW), and a solute-binding protein (cysP). ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 239
Score = 42.7 bits (101), Expect = 2e-06
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
A++ +S + GE LLG +G+GKTT +++ G +P SG
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 42.8 bits (101), Expect = 2e-06
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 15 TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+F Y D + +SF + +G+ ++G NG+GK+T K++ G K SG + N +I
Sbjct: 14 SFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI 73
Query: 73 RD 74
D
Sbjct: 74 TD 75
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 42.5 bits (101), Expect = 2e-06
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+ A+ ++ + GE ++G +G+GK+T +L G KPTSG + +
Sbjct: 16 EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTK 71
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 42.5 bits (100), Expect = 2e-06
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
+GE GLLG NGAGKTT + + G I P G V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKV 39
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is
also a nucleotide binding domain (NBD).
Length = 227
Score = 42.6 bits (101), Expect = 3e-06
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMN 69
Y K A+ IS + +GE L+G +G GK+T ++L P G +
Sbjct: 7 NVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDG 66
Query: 70 HSIRD 74
I D
Sbjct: 67 KDIYD 71
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 42.5 bits (100), Expect = 3e-06
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
++ + V G GL+G NGAGKTT + + G + PT+G V
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLV 62
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain
of glucan transporter and related proteins, subfamily
C. Glucan exporter ATP-binding protein. In A.
tumefaciens cyclic beta-1, 2-glucan must be transported
into the periplasmic space to exert its action as a
virulence factor. This subfamily belongs to the
MRP-like family and is involved in drug, peptide, and
lipid export. The MRP-like family, similar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains each
composed of six transmembrane (TM) helices and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins.
Length = 229
Score = 42.2 bits (100), Expect = 3e-06
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 15 TFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
F YD KP + I+F + GE ++G GAGKTT +L P G + IR
Sbjct: 9 NFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIR 68
Query: 74 D 74
D
Sbjct: 69 D 69
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 42.1 bits (99), Expect = 4e-06
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
V I+ + RGE L+G NG+GK+T +LTG +P SG +
Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 41.9 bits (99), Expect = 5e-06
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
+ +SF + GE + G NGAGKTT ++L G ++P +G Y I++ +
Sbjct: 19 SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYH 74
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of
RNase L inhibitor. The ABC ATPase RNase L inhibitor
(RLI) is a key enzyme in ribosomal biogenesis,
formation of translation preinitiation complexes, and
assembly of HIV capsids. RLI's are not transport
proteins, and thus cluster with a group of soluble
proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains, which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 177
Score = 41.4 bits (97), Expect = 5e-06
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
V GE G++G NG GKTT K+L G + P N D D +
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN---------DEWDGIT 62
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system,
ATP-binding protein. This model represents LolD, a
member of the ABC transporter family (pfam00005). LolD
is involved in localization of lipoproteins in some
bacteria. It works with a transmembrane protein LolC,
which in some species is a paralogous pair LolC and
LolE. Depending on whether the residue immediately
following the new, modified N-terminal Cys residue, the
nascent lipoprotein may be carried further by LolA and
LolB to the outer membrane, or remain at the inner
membrane. The top scoring proteins excluded by this
model include homologs from the archaeal genus
Methanosarcina [Protein fate, Protein and peptide
secretion and trafficking].
Length = 221
Score = 41.6 bits (98), Expect = 6e-06
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
+S +G+GE ++G +G+GK+T +L G PTSG S+
Sbjct: 22 KGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLS 70
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 41.4 bits (97), Expect = 7e-06
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 1 MLVTSLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60
++ S V +H Y A++++S + +GE L+G NGAGKTT L G +
Sbjct: 3 KVMLSFDKVSAH-----YGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA 57
Query: 61 TSGN 64
TSG
Sbjct: 58 TSGR 61
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 41.6 bits (98), Expect = 8e-06
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 16 FPYDTKP---AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
F Y +P A++ ++ V GE L+G +GAGK+T F++L P SG
Sbjct: 345 FAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSG 395
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 236
Score = 41.1 bits (97), Expect = 1e-05
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 15 TFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
TF YD +P + +SF + G+ ++G +G+GK+T ++L +SG+ + IR
Sbjct: 7 TFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR 66
Query: 74 D 74
+
Sbjct: 67 E 67
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding
protein; Provisional.
Length = 272
Score = 41.0 bits (96), Expect = 1e-05
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 76
A+ SF V G L+G+NG+GK+T FK L G ++ SG ++ R ++
Sbjct: 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQAL 75
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA.
This model describes the cyt c biogenesis protein
encoded by ccmA in bacteria. An exception is, an
arabidopsis protein. Quite likely this is encoded by an
organelle. Bacterial c-type cytocromes are located on
the periplasmic side of the cytoplasmic membrane.
Several gene products encoded in a locus designated as
'ccm' are implicated in the transport and assembly of
the functional cytochrome C. This cluster includes
genes: ccmA;B;C;D;E;F;G and H. The posttranslational
pathway includes the transport of heme moiety, the
secretion of the apoprotein and the covalent attachment
of the heme with the apoprotein. The proteins ccmA and
B represent an ABC transporter; ccmC and D participate
in heme transfer to ccmE, which function as a
periplasmic heme chaperone. The presence of ccmF, G and
H is suggested to be obligatory for the final
functional assembly of cytochrome c [Protein fate,
Protein and peptide secretion and trafficking,
Transport and binding proteins, Other].
Length = 198
Score = 40.4 bits (95), Expect = 1e-05
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+ +SF + GE + G NG GKTT ++L G ++P SG
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG 55
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 40.5 bits (95), Expect = 1e-05
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
Y KPA+ I+ + GE +LG +G GKTT ++ G + G
Sbjct: 11 YGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG 56
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 40.3 bits (95), Expect = 2e-05
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
D KPA++ ++ + G+ L+G +GAGK+T +L G + PT G V +RD
Sbjct: 332 DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRD 387
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 40.4 bits (95), Expect = 2e-05
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
Y TK ++ +S + +G ++G NGAGK+T M++ +K SG + +
Sbjct: 11 YGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTS 67
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c
biogenesis. Cytochrome c maturation in E. coli requires
the ccm operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and
CcmH. The CcmAB proteins represent an ABC transporter
and the CcmCD proteins participate in heme transfer to
CcmE.
Length = 201
Score = 40.2 bits (94), Expect = 2e-05
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+SF + GE + G NG+GKTT ++L G P +G
Sbjct: 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG 55
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 40.0 bits (94), Expect = 2e-05
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 15 TFPYDTK--PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
TF Y K PA+ I+F + G+ L+G +G+GK+T +LT G + H +
Sbjct: 348 TFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL 407
Query: 73 RD 74
RD
Sbjct: 408 RD 409
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization.
Members of this protein family are the ATP-binding
cassette (ABC) subunit of the known or predicted
high-affinity xylose ABC transporter for xylose import.
These genes, which closely resemble other sugar
transport ABC transporter genes, typically are encoded
near xylose utilization enzymes and regulatory
proteins. Note that this form of the transporter
contains two copies of the ABC transporter domain
(pfam00005) [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 500
Score = 40.2 bits (94), Expect = 2e-05
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
+ A++ I V GEC GL G NGAGK+T K+L+G
Sbjct: 11 FGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG 49
Score = 37.5 bits (87), Expect = 2e-04
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 57
V+ +SF + RGE G+ GL GAG+T + L GA
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA 309
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 39.8 bits (93), Expect = 3e-05
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 11 SHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
+H F + +P + F V GE + G NGAGKTT ++L G + SG +
Sbjct: 14 AHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK 73
Query: 71 SIR 73
+
Sbjct: 74 TAT 76
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 39.7 bits (93), Expect = 3e-05
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
+N +S + GE LLG +G GK+T ++L G P+ GN
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGN 68
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 39.4 bits (93), Expect = 3e-05
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+SF + GE + G NGAGKT+ ++L G +P +G
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAG 56
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 39.0 bits (92), Expect = 4e-05
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------AYV-- 67
+T + I+ V +GE ++G G+GK++ L G ++ SG+ AYV
Sbjct: 14 EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQ 73
Query: 68 ----MNHSIRD 74
N +IR+
Sbjct: 74 EPWIQNGTIRE 84
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 39.3 bits (92), Expect = 4e-05
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
++ +S + G+ LLG NGAGK+T +++ G + P G
Sbjct: 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG 59
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 39.0 bits (91), Expect = 5e-05
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 15 TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
F Y D ++ IS + GE G++G +G+GK+T K++ P +G V H +
Sbjct: 7 RFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDL 66
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 39.3 bits (91), Expect = 5e-05
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 16 FPYDTKPAVNQ---ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
F Y+ + VNQ +SF + +GE ++G NG+GK+TT +++ G + G
Sbjct: 12 FKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEG 62
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 39.3 bits (92), Expect = 5e-05
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
I F + GE LLG NGAGK+T K++ G + P SG
Sbjct: 30 IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66
Score = 34.3 bits (79), Expect = 0.002
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
IS V GE GL G+ GAG+T + L G G + I
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINA 329
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 38.9 bits (91), Expect = 5e-05
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+ TK A+ +S + G LLG NGAGK+T L G P G VM +
Sbjct: 13 RYKDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV 69
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 38.8 bits (91), Expect = 6e-05
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 61
AV+ IS + RG+ GL+G +G+GK+T L I
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340
Score = 36.9 bits (86), Expect = 4e-04
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTT 50
T AV ISF + GE L+G +G+GK+ T
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVT 52
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 38.3 bits (89), Expect = 8e-05
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 41 GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
G NG GK++ +M+ G ++P+SGN Y N +I
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI 64
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as
a three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603
and marine actinobacterium PHSC20C1 this cassette is in
an apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 38.3 bits (89), Expect = 8e-05
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
G GLLG NG+GK+T ++L GA++P +G
Sbjct: 27 GSLTGLLGPNGSGKSTLLRLLAGALRPDAG 56
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding
protein. [Transport and binding proteins, Anions].
Length = 237
Score = 38.2 bits (89), Expect = 8e-05
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
A++ ++ V G LLG +G+GK+T +++ G +P SG
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSG 55
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 38.3 bits (89), Expect = 9e-05
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
P + I+ + +GE + G G+GKT+ ++ G ++P+ G + HS R S
Sbjct: 45 LCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEG---KIKHSGRIS 101
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 38.3 bits (90), Expect = 9e-05
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
T+P +P + +S + GE LLG G GK+T ++LT A P G + I D
Sbjct: 347 TYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD 406
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 38.1 bits (88), Expect = 1e-04
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
V S + GE F ++GL+G+GK+T ++L I+PT G +
Sbjct: 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLI 87
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 37.9 bits (89), Expect = 1e-04
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
+SF + GE L G NG+GKTT +++ G + P +G
Sbjct: 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT 58
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein
PhnK. Members of this family are the PhnK protein of
C-P lyase systems for utilization of phosphonates.
These systems resemble phosphonatase-based systems in
having a three component ABC transporter, where
TIGR01097 is the permease, TIGR01098 is the
phosphonates binding protein, and TIGR02315 is the
ATP-binding cassette (ABC) protein. They differ,
however, in having, typically, ten or more additional
genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and
the adjacent-encoded PhnL resemble transporter
ATP-binding proteins but are suggested, based on
mutatgenesis studies, to be part of this complex rather
than part of a transporter per se [Central intermediary
metabolism, Phosphorus compounds].
Length = 253
Score = 37.9 bits (88), Expect = 1e-04
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
Y +SF + GE G++G +G+GK+T L G + P G A + S
Sbjct: 13 YGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRS 66
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 37.7 bits (88), Expect = 2e-04
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
Y+ +P ++ +S+ V GE + ++G NGAGK+T ++TG
Sbjct: 270 YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
Score = 26.1 bits (58), Expect = 1.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 28 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
S + G+ + +G NG+GK+ + L G + SG
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSG 58
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 37.3 bits (87), Expect = 2e-04
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
G+ GL+G NG GK+T K+L G +KP G
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGK 56
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 37.8 bits (88), Expect = 2e-04
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTT 50
D V ISF + GE GL+G +G+GK+TT
Sbjct: 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTT 328
Score = 29.3 bits (66), Expect = 0.14
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTT 50
+ VN +S + GE L+G +G+GK+ T
Sbjct: 21 VRTVVNDVSLQIEAGETLALVGESGSGKSVT 51
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 37.4 bits (87), Expect = 2e-04
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 16 FPYDTKPAVNQISFGVGRGECFGLL-GLNGAGKTTTFKMLTGAIKPTSG 63
+ +N ISF + GE F L+ G +G GK+T K++ I PTSG
Sbjct: 15 YLAGDAKILNNISFSLRAGE-FKLITGPSGCGKSTLLKIVASLISPTSG 62
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 259
Score = 37.0 bits (86), Expect = 2e-04
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 7 QTVDSHLE-TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65
SHL ++ + A+ +S + GE +LG +G GKTT ++ G + P+ G+
Sbjct: 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI 62
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 37.2 bits (86), Expect = 3e-04
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
P + ISF + +G+ + G G+GK++ M+ G ++P+ G + HS R S
Sbjct: 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGK---IKHSGRIS 490
Score = 29.5 bits (66), Expect = 0.14
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKML 54
+SF V G+ GLLG G+GK+T L
Sbjct: 1238 LSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 36.9 bits (85), Expect = 3e-04
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
F Y +P + ++ GL+G NG GK+T F L+G ++P G
Sbjct: 9 FRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKG 56
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 36.7 bits (85), Expect = 3e-04
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-AYVM 68
Y +SF + GE G++G +G+GKTT K ++G + P +G Y M
Sbjct: 16 YGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRM 67
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 36.5 bits (85), Expect = 3e-04
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
Y TK +N +S + G+ L+G NG GK+T K + P SG
Sbjct: 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSG 57
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 36.8 bits (85), Expect = 4e-04
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
A+N +S V G+ +G++G +GAGK+T + + +PTSG+ V
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIV 64
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 36.8 bits (85), Expect = 4e-04
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 8 TVDSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-- 64
V+ TF + ++ V +SF G+ ++G GAGKTT +L PT G
Sbjct: 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393
Query: 65 ------AYVMNHSIRDSMDLV 79
V S+R S+ V
Sbjct: 394 IDGIDINTVTRESLRKSIATV 414
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 36.7 bits (85), Expect = 4e-04
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 19 DTKPAVNQISFGV-GR------------GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65
DT A+ +SF V GR G+ GL+G NG+GK+T KML P+ G
Sbjct: 9 DTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI 68
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 36.3 bits (84), Expect = 4e-04
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+SF +G GE ++G +G+GK+T +L G PTSG
Sbjct: 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 36.6 bits (85), Expect = 4e-04
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
++ ++ + +G LLG +G GKTT +++ G KPT G ++
Sbjct: 22 IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFI 65
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into
the lumen of the endoplasmic reticulum (ER), where
these peptides are loaded on major histocompatibility
complex (MHC) I molecules. Loaded MHC I leave the ER
and display their antigenic cargo on the cell surface
to cytotoxic T cells. Subsequently, virus-infected or
malignantly transformed cells can be eliminated. TAP
belongs to the large family of ATP-binding cassette
(ABC) transporters, which translocate a vast variety of
solutes across membranes.
Length = 226
Score = 35.9 bits (83), Expect = 6e-04
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 15 TFPYDTKPAVN---QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
TF Y T+P +SF + GE L+G +G+GK+T +L +P G +
Sbjct: 18 TFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKP 77
Query: 72 IRD 74
I
Sbjct: 78 ISQ 80
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 35.8 bits (83), Expect = 6e-04
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+ V RGE ++G +G+GK+T +L G P+SG ++ +
Sbjct: 28 GVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPL 74
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 35.7 bits (83), Expect = 7e-04
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
A++ +SF + RG+ ++G +G GK+T ++LT PT G Y
Sbjct: 30 ALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELY 73
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide
dismutase. NikD and NikE are homologous [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 230
Score = 35.8 bits (83), Expect = 7e-04
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60
V ++ + RGE L+G +G+GK+ T + G + P
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPP 38
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 35.8 bits (83), Expect = 7e-04
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
V+ T+P PA+ ++F + G+ G+ G G+GK+T ++
Sbjct: 315 DVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI 361
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 35.8 bits (82), Expect = 7e-04
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 16 FPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN-HS 71
F YDT+ V ++F + G+ + +G +G GK+T K++ PT G+ + + H+
Sbjct: 390 FHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHN 449
Query: 72 IRD 74
++D
Sbjct: 450 LKD 452
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 35.6 bits (83), Expect = 8e-04
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGN 64
K + ++ V GE ++G NG+GK+T + G + T G
Sbjct: 15 GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGE 62
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1
and is thought to have a role in resistance to
oxidative stress. Interestingly, subfamily B is more
closely related to the carboxyl-terminal component of
subfamily C than the two halves of ABCC molecules are
with one another.
Length = 238
Score = 35.6 bits (83), Expect = 8e-04
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 15 TFPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
+F Y ++P V +S + G+ L+G +G GK+T +L PTSG +
Sbjct: 7 SFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVD 66
Query: 72 IRD 74
IRD
Sbjct: 67 IRD 69
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length
MRP-type transporter 1). NFT1 belongs to the MRP
(multidrug resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 35.5 bits (82), Expect = 9e-04
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
D P + +SF V GE G++G GAGK+T L ++ G
Sbjct: 19 DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEG 63
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 35.5 bits (82), Expect = 0.001
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
PY+ + A++ ++ +G+ + ++G G+GK+T + + +KPT+G
Sbjct: 17 PYEHQ-AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGT 63
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 35.4 bits (82), Expect = 0.001
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
P ++ +S + GE +LG +G+GK+T L G + P G
Sbjct: 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGE 391
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only
if the ThiB and ThiP subunits are also found [Transport
and binding proteins, Other].
Length = 213
Score = 35.2 bits (81), Expect = 0.001
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
+ Y+ P + V GE ++G +GAGK+T ++ G I+P SG+ V
Sbjct: 7 RYEYEHLPM--EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV 57
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 34.7 bits (79), Expect = 0.001
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69
GE ++G G+GKTT + L + P G ++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 35.2 bits (81), Expect = 0.001
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65
AV +SF + RGE ++G +G+GK+ T L ++ G
Sbjct: 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV 73
Score = 31.4 bits (71), Expect = 0.027
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
AV ++SF + GE L+G +G+GK+TT + L ++ G
Sbjct: 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGG 379
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 35.2 bits (81), Expect = 0.001
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 15 TFPYDTKPAV-NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
+F Y P + ++FG+ ++G NG GK+T K+++G ++P+SG +
Sbjct: 515 SFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF 567
Score = 29.8 bits (67), Expect = 0.098
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 10 DSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFK-MLTGAI 58
D H+E F + + S + G +GL+G NG GKTT + M AI
Sbjct: 177 DIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI 228
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 34.7 bits (80), Expect = 0.002
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
++ IS + ++G++G+GK+T K+L G + SG + S++D
Sbjct: 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKD 540
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 34.6 bits (80), Expect = 0.002
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 15 TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
TF Y D ++ +S + GE ++G +G+GK+T ++L G P SG+ +
Sbjct: 458 TFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for
the breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 34.6 bits (79), Expect = 0.002
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60
Y ++ +S + GE L+G +G GKTT + + G +K
Sbjct: 15 YGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA 57
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 34.4 bits (79), Expect = 0.002
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+F + + IS V RG+ ++G +G GKTT +++ G I P G
Sbjct: 14 SFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHG 62
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 34.1 bits (79), Expect = 0.002
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA-YVMNH 70
Y + +SF + GE G++G +G+GKTT L+ + P +G Y M
Sbjct: 16 YGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD 69
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 34.3 bits (79), Expect = 0.003
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
P + K A++ +S + +GE ++G G+GKTT + L + P +G
Sbjct: 17 PTELK-ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of
nitrate transport in bacteria and archaea. This protein
belongs to the ATP-binding cassette (ABC) superfamily.
It is thought that the two subunits encoded by ntrC and
ntrD form the binding surface for interaction with ATP.
This model is restricted in identifying ATP binding
subunit associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from
the operon which among others include products of ntrA
- a regulatory protein; ntrB - a hydropbobic
transmembrane permease and narB - a reductase
[Transport and binding proteins, Anions, Transport and
binding proteins, Other].
Length = 230
Score = 34.0 bits (78), Expect = 0.003
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
++ + +GE L+G +G GK+T +++G +PTSG +
Sbjct: 4 VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL 44
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 34.0 bits (79), Expect = 0.003
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
+ K + IS V +GE ++G +G+GK+T + L G +P SG+ V + D D
Sbjct: 12 FGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKD 71
Query: 78 L 78
+
Sbjct: 72 I 72
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 34.1 bits (78), Expect = 0.003
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+ A+ ++F + GE L G +GAGK+T K++ G +P++G + H I
Sbjct: 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDI 66
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 33.9 bits (78), Expect = 0.003
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
N IS + G+ LLG +G+GKTT +++ G TSG
Sbjct: 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG 57
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 33.8 bits (78), Expect = 0.003
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
E G+ G +GAGK+T + + G KP G +
Sbjct: 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL 56
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 34.0 bits (78), Expect = 0.003
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
P + K ++ ISF + G L+G G+GK+T + +KP+SG + + I
Sbjct: 17 PMEKK-GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHI 71
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays
the role of a scaffold protein for assembly of
iron-sulfur clusters and delivery to target proteins;
SufS is a cysteine desulfurase which mobilizes the
sulfur atom from cysteine and provides it to the
cluster; SufE has no associated function yet.
Length = 200
Score = 33.7 bits (78), Expect = 0.003
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRD 74
++ + +GE L+G NG+GK+T K + G + T G I D
Sbjct: 19 VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 33.5 bits (77), Expect = 0.005
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
P T AV+ ++ + GE G++G +G GK+T + + G +K T G
Sbjct: 30 PPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGE 77
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 33.1 bits (76), Expect = 0.006
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
D + +++++F V GE + G +GAGKT+ + L G
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG 441
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 33.0 bits (76), Expect = 0.007
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+S V GE L+G NGAGK+T + G + P SG+ +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEA 61
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ
are the ATP-binding components of the bacterial
periplasmic histidine and glutamine permeases,
respectively. Histidine permease is a multi-subunit
complex containing the HisQ and HisM integral membrane
subunits and two copies of HisP. HisP has properties
intermediate between those of integral and peripheral
membrane proteins and is accessible from both sides of
the membrane, presumably by its interaction with HisQ
and HisM. The two HisP subunits form a homodimer within
the complex. The domain structure of the amino acid
uptake systems is typical for prokaryotic extracellular
solute binding protein-dependent uptake systems. All of
the amino acid uptake systems also have at least one,
and in a few cases, two extracellular solute binding
proteins located in the periplasm of Gram-negative
bacteria, or attached to the cell membrane of
Gram-positive bacteria. The best-studied member of the
PAAT (polar amino acid transport) family is the HisJQMP
system of S. typhimurium, where HisJ is the
extracellular solute binding proteins and HisP is the
ABC protein.
Length = 213
Score = 32.9 bits (76), Expect = 0.007
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
+ + I V +GE ++G +G+GK+T + + +P SG + + D
Sbjct: 10 FGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDD 67
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 32.8 bits (74), Expect = 0.009
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
P+ ++ A+ I V +G L+G G+GK+T + L G ++PT G V
Sbjct: 16 PFASR-ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV 65
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 32.5 bits (74), Expect = 0.010
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
HL + + +S + G LLG NGAGK+T K L G
Sbjct: 6 HLHVA-RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG 49
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 32.6 bits (74), Expect = 0.011
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 3 VTSLQTVDSHLE-TFPYDTKP-AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60
V S++ D H+ P ++ A+ I + +G+ ++G NG GK+T K+ G P
Sbjct: 335 VDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP 394
Query: 61 TSG 63
G
Sbjct: 395 QEG 397
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 32.2 bits (74), Expect = 0.011
Identities = 11/49 (22%), Positives = 27/49 (55%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
+ K ++ ++ + +G+ + ++G +G+GK+T ++ K SG Y
Sbjct: 8 FGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVY 56
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter
ATP-binding subunit. This model describes
spermidine/putrescine ABC transporter, ATP binding
subunit in bacteria and its equivalents in archaea.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate
binding protein. Polyamines like spermidine and
putrescine play vital role in cell proliferation,
differentiation, and ion homeostasis. The concentration
of polyamines within the cell are regulated by
biosynthesis, degradation and transport (uptake and
efflux included) [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 325
Score = 32.5 bits (74), Expect = 0.012
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSG 63
LLG +G GKTT ++L G +P SG
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSG 25
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 32.1 bits (73), Expect = 0.013
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR--DSM 76
K + IS G + ++G +GAGK+T K++ I PT G+ + I+ D +
Sbjct: 14 FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVI 73
Query: 77 DLVR 80
DL R
Sbjct: 74 DLRR 77
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 31.9 bits (73), Expect = 0.019
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
T+ Y P + V RGE +LG +GAGK+T ++ G + P SG+
Sbjct: 8 TWLYHHLPM--RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGS 55
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 242
Score = 31.7 bits (72), Expect = 0.019
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
Y A+ I+ GE LLG +GAGK++ ++L P SG + +
Sbjct: 10 CFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNH 65
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form
(CCALD), the milder adult form, adrenomyeloneuropathy
(AMN), and variants without neurologic involvement
(i.e. asymptomatic).
Length = 166
Score = 31.4 bits (72), Expect = 0.019
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
+ +SF + G+ + G +G GK++ F+ L G
Sbjct: 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG 49
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 31.5 bits (71), Expect = 0.021
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58
A++ + + GE LLG +G+GK+T + L+G I
Sbjct: 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI 54
>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl)
small GTPases. Arf (ADP-ribosylation factor)/Arl
(Arf-like) small GTPases. Arf proteins are activators
of phospholipase D isoforms. Unlike Ras proteins they
lack cysteine residues at their C-termini and therefore
are unlikely to be prenylated. Arfs are N-terminally
myristoylated. Members of the Arf family are regulators
of vesicle formation in intracellular traffic that
interact reversibly with membranes of the secretory and
endocytic compartments in a GTP-dependent manner. They
depart from other small GTP-binding proteins by a
unique structural device, interswitch toggle, that
implements front-back communication from N-terminus to
the nucleotide binding site. Arf-like (Arl) proteins
are close relatives of the Arf, but only Arl1 has been
shown to function in membrane traffic like the Arf
proteins. Arl2 has an unrelated function in the folding
of native tubulin, and Arl4 may function in the
nucleus. Most other Arf family proteins are so far
relatively poorly characterized. Thus, despite their
significant sequence homologies, Arf family proteins
may regulate unrelated functions.
Length = 158
Score = 31.4 bits (72), Expect = 0.022
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTTFKML----TGAIKPTSG 63
+LGL+GAGKTT L PT G
Sbjct: 4 MLGLDGAGKTTILYKLKLGEVVTTIPTIG 32
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 31.5 bits (72), Expect = 0.025
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 26 QISFGV-GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+F + RG L G +G+GKT+ M+ G +P G
Sbjct: 16 DANFTLPARGIT-ALFGPSGSGKTSLINMIAGLTRPDEG 53
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the
SUF system, shown in E. coli to consist of six proteins
and believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes
a cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 31.5 bits (72), Expect = 0.025
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYV 67
K + ++ V +GE ++G NG+GK+T K + G + + TSG
Sbjct: 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 31.4 bits (71), Expect = 0.027
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59
AV+++S + GE GL+G +G+GK+ K + G K
Sbjct: 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK 58
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 31.2 bits (71), Expect = 0.029
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRD 74
+ + ++ + +GE ++G NG+GK+T K++ G A K G+ SI D
Sbjct: 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILD 75
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 31.3 bits (71), Expect = 0.029
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 15 TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
F Y D+ ++ ++ + GE G++G +G+GK+T K+L P G V
Sbjct: 462 RFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLV----- 516
Query: 73 RDSMDL 78
D +DL
Sbjct: 517 -DGVDL 521
>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family. Pfam combines a
number of different Prosite families together.
Length = 174
Score = 31.0 bits (71), Expect = 0.032
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTTFKMLTG----AIKPTSG 63
+LGL+ AGKTT L PT G
Sbjct: 19 ILGLDNAGKTTILYKLKLGEIVTTIPTIG 47
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 31.0 bits (71), Expect = 0.033
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
LE D K ++F + G+ L+G +GAGKT+ L G
Sbjct: 354 DLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG 398
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 31.2 bits (71), Expect = 0.033
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 15 TFPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+F Y +P V ++F + GE L+G +G+GK+T +L +PT G
Sbjct: 485 SFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG 536
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase
component [Coenzyme metabolism].
Length = 231
Score = 31.2 bits (71), Expect = 0.034
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
F Y P + V GE +LG +GAGK+T ++ G P SG
Sbjct: 8 RFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASG 54
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 31.0 bits (70), Expect = 0.035
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 37 FGLLGLNGAGKTTTFK----MLTGAIKPTSGN 64
+ G NG+GKTT L G +
Sbjct: 22 TLIYGPNGSGKTTILDAIRWALYGKTSRLKKS 53
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 30.8 bits (70), Expect = 0.040
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 15 TFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
+F YD +P +N ISF + G+ ++G +GAGK+T ++L SG+ + IR
Sbjct: 269 SFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIR 328
Query: 74 D 74
D
Sbjct: 329 D 329
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 31.1 bits (71), Expect = 0.041
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 15 TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
TF Y P + S + G+ L+G +G+GK+T K++ G +P SG
Sbjct: 484 TFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535
>gnl|CDD|214940 smart00962, SRP54, SRP54-type protein, GTPase domain. This entry
represents the GTPase domain of the 54 kDa SRP54
component, a GTP-binding protein that interacts with
the signal sequence when it emerges from the ribosome.
SRP54 of the signal recognition particle has a
three-domain structure: an N-terminal helical bundle
domain, a GTPase domain, and the M-domain that binds
the 7s RNA and also binds the signal sequence. The
extreme C-terminal region is glycine-rich and lower in
complexity and poorly conserved between species. The
GTPase domain is evolutionary related to P-loop NTPase
domains found in a variety of other proteins.
Length = 197
Score = 30.5 bits (70), Expect = 0.044
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 39 LLGLNGAGKTTT 50
L+G NG GKTTT
Sbjct: 6 LVGPNGVGKTTT 17
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 30.9 bits (70), Expect = 0.045
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 5 SLQTVDSHLETFPYDTKP--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58
+L VD F ++ P AV++IS+ V +GE G++G +G+GK+ + + G I
Sbjct: 2 ALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI 57
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 30.9 bits (70), Expect = 0.045
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 37 FGLLGLNGAGKTT-----TFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
F ++G NGAGK++ TF L G + + IR
Sbjct: 28 FLIVGPNGAGKSSILDAITFA-LYGKTPRLGAFSL--DDLIRAGEKSAS 73
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 30.6 bits (69), Expect = 0.047
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
A+N IS+ + + + ++G +G+GK+T G IK G V + I D +
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98
>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase. Arl2 (Arf-like 2)
GTPases are members of the Arf family that bind GDP and
GTP with very low affinity. Unlike most Arf family
proteins, Arl2 is not myristoylated at its N-terminal
helix. The protein PDE-delta, first identified in
photoreceptor rod cells, binds specifically to Arl2 and
is structurally very similar to RhoGDI. Despite the
high structural similarity between Arl2 and Rho
proteins and between PDE-delta and RhoGDI, the
interactions between the GTPases and their effectors
are very different. In its GTP bound form, Arl2
interacts with the protein Binder of Arl2 (BART), and
the complex is believed to play a role in mitochondrial
adenine nucleotide transport. In its GDP bound form,
Arl2 interacts with tubulin- folding Cofactor D; this
interaction is believed to play a role in regulation of
microtubule dynamics that impact the cytoskeleton, cell
division, and cytokinesis.
Length = 173
Score = 30.4 bits (69), Expect = 0.051
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTTFKMLTG----AIKPTSG 63
+LGL+ AGKTT K G I PT G
Sbjct: 19 MLGLDNAGKTTILKKFNGEDISTISPTLG 47
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related
to the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 30.4 bits (68), Expect = 0.057
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 36 CFGLLGLNGAGKTTTFKML----TGAIKP-TSGNAYV 67
L+G NGAGKTT + L TG P T GN +V
Sbjct: 30 LTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFV 66
>gnl|CDD|215925 pfam00448, SRP54, SRP54-type protein, GTPase domain. This family
includes relatives of the G-domain of the SRP54 family
of proteins.
Length = 196
Score = 30.2 bits (69), Expect = 0.065
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 39 LLGLNGAGKTTT 50
L+GL G+GKTTT
Sbjct: 6 LVGLQGSGKTTT 17
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 30.0 bits (68), Expect = 0.077
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
Y A+ I+ +GE LLG +GAGK++ ++L P SG + +
Sbjct: 10 CFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN 64
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 30.1 bits (68), Expect = 0.079
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
IS + GE ++G +G+GK+T +L KPTSG V
Sbjct: 26 GISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRV 67
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine
transporter subunit; Provisional.
Length = 257
Score = 29.9 bits (67), Expect = 0.082
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
+S G+ ++G +G+GK+T + + KP+ G+ V +I LVR
Sbjct: 24 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTIN----LVR 73
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 29.8 bits (68), Expect = 0.086
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+ P + ISF + GE G++G G+GK++ L ++ +SG+ + I
Sbjct: 15 NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI 68
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 29.8 bits (67), Expect = 0.088
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVR 80
AV+++S + GE GL+G +G+GK+ K + G T N V +R D +DL+R
Sbjct: 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV---TKDNWRVTADRMRFDDIDLLR 77
>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases.
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like
Arl4 and Arl7, are localized to the nucleus and
nucleolus. Arl5 is developmentally regulated during
embryogenesis in mice. Human Arl5 interacts with the
heterochromatin protein 1-alpha (HP1alpha), a
nonhistone chromosomal protein that is associated with
heterochromatin and telomeres, and prevents telomere
fusion. Arl5 may also play a role in embryonic nuclear
dynamics and/or signaling cascades. Arl8 was identified
from a fetal cartilage cDNA library. It is found in
brain, heart, lung, cartilage, and kidney. No function
has been assigned for Arl8 to date.
Length = 174
Score = 29.6 bits (67), Expect = 0.088
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTT-FKMLTGAI---KPTSG 63
++GL+ AGKTT ++ L G + PT G
Sbjct: 20 IVGLDNAGKTTILYQFLLGEVVHTSPTIG 48
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system,
ATPase component [General function prediction only].
Length = 213
Score = 29.8 bits (67), Expect = 0.093
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60
++F + +GE L+G +G GK+T + GA+
Sbjct: 20 NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAG 54
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 29.7 bits (67), Expect = 0.096
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
A++ ++ V L+G NGAGK+T K L G + SG+
Sbjct: 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGS 54
Score = 29.7 bits (67), Expect = 0.11
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+P++ +SF + +GE G+ GL GA +T + L G + ++G
Sbjct: 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAG 303
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 29.8 bits (68), Expect = 0.10
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
Y K A+ I+ + + + L+G +G GK+T + L
Sbjct: 17 YGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL 53
>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase. Arl3 (Arf-like 3) is an
Arf family protein that differs from most Arf family
members in the N-terminal extension. In is inactive,
GDP-bound form, the N-terminal extension forms an
elongated loop that is hydrophobically anchored into
the membrane surface; however, it has been proposed
that this region might form a helix in the GTP-bound
form. The delta subunit of the rod-specific cyclic GMP
phosphodiesterase type 6 (PDEdelta) is an Arl3
effector. Arl3 binds microtubules in a regulated manner
to alter specific aspects of cytokinesis via
interactions with retinitis pigmentosa 2 (RP2). It has
been proposed that RP2 functions in concert with Arl3
to link the cell membrane and the cytoskeleton in
photoreceptors as part of the cell signaling or
vesicular transport machinery. In mice, the absence of
Arl3 is associated with abnormal epithelial cell
proliferation and cyst formation.
Length = 174
Score = 29.3 bits (66), Expect = 0.12
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTTFKMLTGA----IKPTSG 63
LLGL+ AGKTT K L I PT G
Sbjct: 20 LLGLDNAGKTTILKQLASEDISHITPTQG 48
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 29.5 bits (67), Expect = 0.12
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 39 LLGLNGAGKTTT 50
L G NGAGK+TT
Sbjct: 32 LSGGNGAGKSTT 43
>gnl|CDD|236167 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional
regulator; Reviewed.
Length = 309
Score = 29.5 bits (67), Expect = 0.12
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 39 LLGLNGAGKTTTFKMLTGAIK 59
L+GL GAGK+T +ML +
Sbjct: 138 LIGLRGAGKSTLGRMLAARLG 158
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 29.6 bits (66), Expect = 0.13
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 5 SLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
S++ D HL P P ++ +SF V E G++G GAGK++ L
Sbjct: 1234 SIKFEDVHLRYRP-GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNAL 1282
Score = 26.5 bits (58), Expect = 1.5
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 16 FPYD---TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
F +D +KP ++ I+ + G ++G G GKT+ + G + ++ V+ S+
Sbjct: 622 FSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSV 681
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 259
Score = 29.6 bits (66), Expect = 0.13
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
+F Y+T A+ IS + R + ++G +G GK+T K L
Sbjct: 14 SFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTL 53
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding
cassette (ABC) protein of the three subunit molybdate
ABC transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin
cofactors. In some cases, molybdate may be transported
by a sulfate transporter rather than by a specific
molybdate transporter [Transport and binding proteins,
Anions].
Length = 354
Score = 29.3 bits (66), Expect = 0.13
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
G+G + G +G+GKTT +++ G +P G + ++ DS
Sbjct: 22 GQGVT-AIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDS 64
>gnl|CDD|239389 cd03115, SRP, The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria
and the endoplasmic reticulum in eukaryotes. SRP
recognizes N-terminal sighnal sequences of newly
synthesized polypeptides at the ribosome. The
SRP-polypeptide complex is then targeted to the
membrane by an interaction between SRP and its cognated
receptor (SR). In mammals, SRP consists of six protein
subunits and a 7SL RNA. One of these subunits is a 54
kd protein (SRP54), which is a GTP-binding protein that
interacts with the signal sequence when it emerges from
the ribosome. SRP54 is a multidomain protein that
consists of an N-terminal domain, followed by a central
G (GTPase) domain and a C-terminal M domain.
Length = 173
Score = 29.0 bits (66), Expect = 0.14
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 39 LLGLNGAGKTTT 50
L+GL G GKTTT
Sbjct: 5 LVGLQGVGKTTT 16
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 29.4 bits (66), Expect = 0.14
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--------PTSGNAYVMNHSI 72
+ ++ + G+ ++G +GAGKTT +M+ GA K P SG V +++
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV 455
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 29.2 bits (65), Expect = 0.15
Identities = 13/59 (22%), Positives = 26/59 (44%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
T Y ++ + G ++G NG GK+T + L+ + P G+ ++ I+
Sbjct: 14 TLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQ 72
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 29.3 bits (66), Expect = 0.15
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
AVN ++F + GE G++G +G+GK+ T L G
Sbjct: 31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMG 64
>gnl|CDD|236563 PRK09554, feoB, ferrous iron transport protein B; Reviewed.
Length = 772
Score = 29.3 bits (66), Expect = 0.16
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 38 GLLGLNGAGKTTTFKMLTGA 57
GL+G +GKTT F LTGA
Sbjct: 7 GLIGNPNSGKTTLFNQLTGA 26
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 28.8 bits (65), Expect = 0.19
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
++G G+GK+T + L G ++PTSG + I
Sbjct: 38 IIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVI 71
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 28.9 bits (65), Expect = 0.20
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
A+ ++ + G +G G+GK+T ++L G PT G+ V + I
Sbjct: 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLIT 72
>gnl|CDD|226459 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 28.7 bits (64), Expect = 0.22
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVMNHSIRDSMD 77
+ G E ++G NG+GKTT + A+ Y+ S++ +D
Sbjct: 16 NLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFIDFFIYLRFKSLKIELD 68
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 257
Score = 28.9 bits (64), Expect = 0.22
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59
+ K + I+ + FG++G +G+GK+T K+L I+
Sbjct: 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE 61
>gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein
VexC; Provisional.
Length = 213
Score = 28.9 bits (64), Expect = 0.22
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
+++ F +G E G+L G+GKTT ++L G P G+
Sbjct: 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGD 43
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly
regulated anion channel at the apical surface of many
epithelia. Use of the term assembly of a functional ion
channel implies the coming together of subunits or at
least smaller not-yet functional components of the
active whole. In fact, on the basis of current
knowledge only the CFTR polypeptide itself is required
to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2.
Length = 275
Score = 28.7 bits (64), Expect = 0.22
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTF 51
ISF + G+ GLLG G+GK+T
Sbjct: 23 ISFSISPGQRVGLLGRTGSGKSTLL 47
>gnl|CDD|236686 PRK10416, PRK10416, signal recognition particle-docking protein
FtsY; Provisional.
Length = 318
Score = 28.5 bits (65), Expect = 0.23
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 39 LLGLNGAGKTTT 50
++G+NG GKTTT
Sbjct: 119 VVGVNGVGKTTT 130
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 261
Score = 28.5 bits (63), Expect = 0.27
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
+F YDT+ + +S + + + ++G +G GK+T K L
Sbjct: 14 SFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL 53
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide-binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 202
Score = 28.4 bits (64), Expect = 0.29
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 61
P + S V GE +LG G+G +T K L +
Sbjct: 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGN 60
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 28.4 bits (64), Expect = 0.30
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 12/38 (31%)
Query: 13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTT 50
P + KP V I F +G+NG GKTTT
Sbjct: 130 PLEIPKEKKPFV--ILF----------VGVNGVGKTTT 155
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 28.1 bits (63), Expect = 0.32
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTT 50
+P V+ +S + RG L+G +G+GK+ T
Sbjct: 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLT 45
>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta), together with SR-alpha, forms the
heterodimeric signal recognition particle (SRP).
Signal recognition particle receptor, beta subunit
(SR-beta). SR-beta and SR-alpha form the heterodimeric
signal recognition particle (SRP or SR) receptor that
binds SRP to regulate protein translocation across the
ER membrane. Nascent polypeptide chains are synthesized
with an N-terminal hydrophobic signal sequence that
binds SRP54, a component of the SRP. SRP directs
targeting of the ribosome-nascent chain complex (RNC)
to the ER membrane via interaction with the SR, which
is localized to the ER membrane. The RNC is then
transferred to the protein-conducting channel, or
translocon, which facilitates polypeptide translation
across the ER membrane or integration into the ER
membrane. SR-beta is found only in eukaryotes; it is
believed to control the release of the signal sequence
from SRP54 upon binding of the ribosome to the
translocon. High expression of SR-beta has been
observed in human colon cancer, suggesting it may play
a role in the development of this type of cancer.
Length = 202
Score = 28.1 bits (63), Expect = 0.32
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTS 62
LLG + +GKT F LT ++
Sbjct: 5 LLGPSDSGKTALFTKLTTGKVRST 28
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 28.6 bits (64), Expect = 0.33
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 17/79 (21%)
Query: 15 TFPYDTK---PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN------- 64
F +D+K P ++ I+ V G ++G G GKT+ + G + P S
Sbjct: 621 YFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT 680
Query: 65 -AYV------MNHSIRDSM 76
AYV N ++RD++
Sbjct: 681 VAYVPQVSWIFNATVRDNI 699
Score = 27.0 bits (60), Expect = 0.97
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
P ++ +SF + E G++G GAGK++ L ++ G
Sbjct: 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1294
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 28.3 bits (63), Expect = 0.34
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+S V GE L+G NGAGK+T + G SG
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSG 53
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 28.4 bits (63), Expect = 0.35
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN--- 64
TV + T+ D P +N I+F + G ++G G GK++ L + G+
Sbjct: 638 TVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHM 697
Query: 65 ----------AYVMNHSIRDSM 76
A++ N S+R+++
Sbjct: 698 KGSVAYVPQQAWIQNDSLRENI 719
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 28.3 bits (64), Expect = 0.36
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 18 YDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
YD K + I V GE L+G +G GK+T +M+ G + TSG
Sbjct: 13 YDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG 59
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette
domain of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 211
Score = 28.2 bits (63), Expect = 0.37
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+GE ++G +G+GK+T ++ G P SG
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSG 53
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter
family is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 27.9 bits (63), Expect = 0.38
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
K + +S GE ++G +GAGK+T L G
Sbjct: 21 GKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAG 57
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter
ATP-binding protein YecC; Provisional.
Length = 250
Score = 28.2 bits (63), Expect = 0.40
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
++ I V GE ++G +G+GKTT + + +P +G V + +I
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITI 67
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter.
This family belongs, more broadly, to the family of
proline and glycine-betaine transporters, but members
have been identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport
and binding proteins, Amino acids, peptides and
amines].
Length = 382
Score = 28.2 bits (63), Expect = 0.40
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
V+ S + GE L+GL+G+GK+T + + G
Sbjct: 39 GVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNG 72
>gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only].
Length = 411
Score = 28.0 bits (63), Expect = 0.44
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 37 FGLLGLNGAGKTTTFKMLTGAIKP 60
L+G AGK+T F LTGA
Sbjct: 195 VALVGYTNAGKSTLFNALTGADVY 218
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 268
Score = 28.0 bits (62), Expect = 0.45
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTT 49
Y K AVN IS + + L+G +G GK+T
Sbjct: 31 YGEKRAVNDISMDIEKHAVTALIGPSGCGKST 62
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA
and the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial
binding of EF-G as well. The dissociation of EF-G
leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 27.6 bits (62), Expect = 0.54
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 36 CFGLLGLNGAGKTTTFKML---TGAIK 59
L+G +G+GKTT + L TGAI
Sbjct: 1 NIALVGHSGSGKTTLAEALLYATGAID 27
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 27.6 bits (62), Expect = 0.60
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 25/71 (35%)
Query: 33 RGECFGLLGLNGAGKTTT-------FKMLTGAIKPT--SGNAY----------------V 67
RG F L+G G GKTTT M GA K + ++Y V
Sbjct: 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 314
Query: 68 MNHSIRDSMDL 78
H+++D+ DL
Sbjct: 315 PVHAVKDAADL 325
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 252
Score = 27.7 bits (61), Expect = 0.60
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
Y K AV ++ V RG L+G +G GKTT + + T G A V + D D
Sbjct: 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPG-ARVTGRILLDGQD 72
Query: 78 L 78
+
Sbjct: 73 I 73
>gnl|CDD|236780 PRK10867, PRK10867, signal recognition particle protein;
Provisional.
Length = 433
Score = 27.4 bits (62), Expect = 0.62
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 39 LLGLNGAGKTTT 50
++GL GAGKTTT
Sbjct: 105 MVGLQGAGKTTT 116
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding
subunit; Provisional.
Length = 257
Score = 27.3 bits (61), Expect = 0.68
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
Y + +NQ+ + G+ ++G +G GK+T ++L G P++G
Sbjct: 22 YGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG 67
>gnl|CDD|223615 COG0541, Ffh, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 451
Score = 27.5 bits (62), Expect = 0.68
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 39 LLGLNGAGKTTT 50
++GL G+GKTTT
Sbjct: 105 MVGLQGSGKTTT 116
>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle
coats. Sar1 is an essential component of COPII vesicle
coats involved in export of cargo from the ER. The
GTPase activity of Sar1 functions as a molecular switch
to control protein-protein and protein-lipid
interactions that direct vesicle budding from the ER.
Activation of the GDP to the GTP-bound form of Sar1
involves the membrane-associated guanine nucleotide
exchange factor (GEF) Sec12. Sar1 is unlike all Ras
superfamily GTPases that use either myristoyl or prenyl
groups to direct membrane association and function, in
that Sar1 lacks such modification. Instead, Sar1
contains a unique nine-amino-acid N-terminal extension.
This extension contains an evolutionarily conserved
cluster of bulky hydrophobic amino acids, referred to
as the Sar1-N-terminal activation recruitment (STAR)
motif. The STAR motif mediates the recruitment of Sar1
to ER membranes and facilitates its interaction with
mammalian Sec12 GEF leading to activation.
Length = 191
Score = 27.2 bits (61), Expect = 0.71
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 39 LLGLNGAGKTTTFKML 54
LGL+ AGKTT ML
Sbjct: 24 FLGLDNAGKTTLLHML 39
>gnl|CDD|206666 cd01878, HflX, HflX GTPase family. HflX subfamily. A distinct
conserved domain with a glycine-rich segment N-terminal
of the GTPase domain characterizes the HflX subfamily.
The E. coli HflX has been implicated in the control of
the lambda cII repressor proteolysis, but the actual
biological functions of these GTPases remain unclear.
HflX is widespread, but not universally represented in
all three superkingdoms.
Length = 204
Score = 27.0 bits (61), Expect = 0.74
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 45 AGKTTTFKMLTGA 57
AGK+T F LTGA
Sbjct: 52 AGKSTLFNALTGA 64
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a
large family of proteins responsible for translocation
of a variety of compounds across biological membranes.
ABC transporters are the largest family of proteins in
many completely sequenced bacteria. ABC transporters
are composed of two copies of this domain and two
copies of a transmembrane domain pfam00664. These four
domains may belong to a single polypeptide as in human
CFTR, or belong in different polypeptide chains.
Length = 119
Score = 26.9 bits (60), Expect = 0.74
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 48 TTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+T K++TG ++PTSG +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTG 27
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 27.0 bits (60), Expect = 0.79
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 1 MLVTSLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML------ 54
M LQ D + Y+ K A+N +S E L+G +G+GK+T + +
Sbjct: 1 MTEPILQVSDLSVY---YNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDL 57
Query: 55 ------TGAIKPTSGNAY 66
TG+I N Y
Sbjct: 58 NPEVTITGSIVYNGHNIY 75
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD.
This model describes the DndB protein encoded by an
operon associated with a sulfur-containing modification
to DNA. The operon is sporadically distributed in
bacteria, much like some restriction enzyme operons.
DndD is described as a putative ATPase. The small
number of examples known so far include species from
among the Firmicutes, Actinomycetes, Proteobacteria,
and Cyanobacteria [DNA metabolism,
Restriction/modification].
Length = 650
Score = 27.3 bits (61), Expect = 0.84
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 41 GLNGAGKTTT 50
GLNGAGKTT
Sbjct: 35 GLNGAGKTTL 44
>gnl|CDD|234232 TIGR03499, FlhF, flagellar biosynthetic protein FlhF. [Cellular
processes, Chemotaxis and motility].
Length = 283
Score = 26.9 bits (60), Expect = 0.85
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 33 RGECFGLLGLNGAGKTTT-FKM 53
RG L+G G GKTTT K+
Sbjct: 194 RGGVIALVGPTGVGKTTTLAKL 215
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 276
Score = 27.0 bits (59), Expect = 0.87
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
T + K ++Q+S G L+G G+GKTT + L SG Y
Sbjct: 28 TLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRY 79
>gnl|CDD|236583 PRK09601, PRK09601, GTP-binding protein YchF; Reviewed.
Length = 364
Score = 27.0 bits (61), Expect = 0.89
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 38 GLLGLNGAGKTTTFKMLTGA 57
G++GL GK+T F LT A
Sbjct: 6 GIVGLPNVGKSTLFNALTKA 25
>gnl|CDD|232804 TIGR00064, ftsY, signal recognition particle-docking protein
FtsY. There is a weak division between FtsY and SRP54;
both are GTPases. In E.coli, ftsY is an essential gene
located in an operon with cell division genes ftsE and
ftsX, but its apparent function is as the signal
recognition particle docking protein [Protein fate,
Protein and peptide secretion and trafficking].
Length = 272
Score = 27.2 bits (61), Expect = 0.89
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 39 LLGLNGAGKTTT 50
+G+NG GKTTT
Sbjct: 77 FVGVNGVGKTTT 88
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the
ABC transporter family include the Walker A and Walker
B motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known
as the ABC signature sequence.
Length = 204
Score = 26.8 bits (60), Expect = 0.91
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTF---KM-LTGAIKPTS 62
++I F ++G NGAGKTT K LTG + P S
Sbjct: 15 RSEIEF---FSPLTLIVGQNGAGKTTIIEALKYALTGELPPNS 54
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 27.0 bits (59), Expect = 0.97
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 38 GLLGLNGAGKTTTFKML 54
++G NG+GK+ K L
Sbjct: 3 VIIGPNGSGKSNLLKAL 19
>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is
a important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP.
Length = 154
Score = 26.7 bits (60), Expect = 1.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 39 LLGLNGAGKTTTFKML 54
L+G+ GAGKTT ++L
Sbjct: 4 LIGMMGAGKTTVGRLL 19
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 26.8 bits (60), Expect = 1.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSG 63
+ G +GAGKT+ ++G +P G
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKG 53
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the
cells of red pigments, which are synthesized from
guanine, and brown pigments, which are synthesized from
tryptophan. The pigment precursors are encoded by the
white, brown, and scarlet genes, respectively. Evidence
from genetic and biochemical studies suggest that the
White and Brown proteins function as heterodimers to
import guanine, while the White and Scarlet proteins
function to import tryptophan. However, a recent study
also suggests that White may be involved in the
transport of a metabolite, such as 3-hydroxykynurenine,
across intracellular membranes. Mammalian ABC
transporters belonging to the White subfamily (ABCG1,
ABCG5, and ABCG8) have been shown to be involved in the
regulation of lipid-trafficking mechanisms in
macrophages, hepatocytes, and intestinal mucosa cells.
ABCG1 (ABC8), the human homolog of the Drosophila white
gene is induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 26.9 bits (60), Expect = 1.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
+N +S V G+ +LG +G+GKTT ++G
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISG 55
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 250
Score = 26.8 bits (59), Expect = 1.1
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFK 52
Y K AV ++ + + + ++G +G GKTT +
Sbjct: 13 YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLR 47
>gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed.
Length = 396
Score = 26.7 bits (60), Expect = 1.1
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 11/41 (26%)
Query: 38 GLLGLNGAGKTTTFKMLTGA-----------IKPTSGNAYV 67
GL+G GK+T F T A I P G AYV
Sbjct: 5 GLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYV 45
>gnl|CDD|172967 PRK14495, PRK14495, putative molybdopterin-guanine dinucleotide
biosynthesis protein MobB/unknown domain fusion
protein; Provisional.
Length = 452
Score = 26.9 bits (59), Expect = 1.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 37 FGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+G++G AGKT + L AI + + HS D
Sbjct: 4 YGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHSHHD 41
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the
F0F1-ATPase, in that they both are proton driven rotary
molecular devices. However, the main function of the
bacterial flagellar motor is to rotate the flagellar
filament for cell motility. Intracellular pathogens
such as Salmonella and Chlamydia also have proteins
which are similar to the flagellar-specific ATPase, but
function in the secretion of virulence-related proteins
via the type III secretory pathway.
Length = 326
Score = 26.9 bits (60), Expect = 1.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 29 FGVGRGECFGLLGLNGAGKTTTFKMLT 55
VG+G+ G+ +G GK+T M+
Sbjct: 64 LTVGKGQRLGIFAGSGVGKSTLLGMIA 90
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 27.0 bits (60), Expect = 1.1
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+ +SF V G + G NG GK++ F++L G + P G
Sbjct: 468 IESLSFEVPSGNNLLICGPNGCGKSSLFRIL-GELWPVYG 506
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 269
Score = 26.7 bits (59), Expect = 1.2
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 5 SLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
SLQ V T Y T AV + + RG+ L+G +G GK+T + L
Sbjct: 15 SLQNV-----TISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSL 59
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption.
This family shows strong sequence similiarity to a
number of amino acid ABC transporter ATP-binding
proteins.
Length = 252
Score = 26.7 bits (59), Expect = 1.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
++ ++F V GE L+G +G+GK+T ++L
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRIL 46
>gnl|CDD|223091 COG0012, COG0012, Predicted GTPase, probable translation factor
[Translation, ribosomal structure and biogenesis].
Length = 372
Score = 26.8 bits (60), Expect = 1.3
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 11/41 (26%)
Query: 38 GLLGLNGAGKTTTFKMLTGA-----------IKPTSGNAYV 67
G++GL GK+T F LT A I+P G YV
Sbjct: 6 GIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYV 46
>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 26.6 bits (59), Expect = 1.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 7 QTVDSHLETFPYDTKPAVNQISFGVG 32
Q + + LE FP AVN ++FG G
Sbjct: 90 QAMTARLEAFPKPVIAAVNGLAFGGG 115
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 26.5 bits (59), Expect = 1.4
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTT 49
+L F Y K A+ IS + + +G +G GK+T
Sbjct: 30 NLNLF-YGDKQALFDISMRIPKNRVTAFIGPSGCGKST 66
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 26.5 bits (59), Expect = 1.4
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 40 LGLNGAGKTTT 50
+G+NG GKTTT
Sbjct: 146 VGVNGTGKTTT 156
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 26.3 bits (58), Expect = 1.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
V RGE L+G +G+GK+T +L G +SG ++ +
Sbjct: 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPL 74
>gnl|CDD|234125 TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family
is one of a number of homologous small, well-conserved
GTP-binding proteins with pleiotropic effects. Bacterial
members are designated HflX, following the naming
convention in Escherichia coli where HflX is encoded
immediately downstream of the RNA chaperone Hfq, and
immediately upstream of HflKC, a membrane-associated
protease pair with an important housekeeping function.
Over large numbers of other bacterial genomes, the
pairing with hfq is more significant than with hflK and
hlfC. The gene from Homo sapiens in this family has been
named PGPL (pseudoautosomal GTP-binding protein-like)
[Unknown function, General].
Length = 351
Score = 26.3 bits (59), Expect = 1.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 37 FGLLGLNGAGKTTTFKMLTGA 57
L+G AGK+T F LTGA
Sbjct: 192 VALVGYTNAGKSTLFNALTGA 212
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 26.7 bits (59), Expect = 1.4
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------AYV------MNHSIR 73
+S V RG+ +LG G+GK+T + L + + G AYV MN ++R
Sbjct: 679 VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVR 738
Query: 74 DSM 76
++
Sbjct: 739 GNI 741
>gnl|CDD|179118 PRK00771, PRK00771, signal recognition particle protein Srp54;
Provisional.
Length = 437
Score = 26.3 bits (59), Expect = 1.5
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 39 LLGLNGAGKTTT 50
L+GL G+GKTTT
Sbjct: 100 LVGLQGSGKTTT 111
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 192
Score = 26.4 bits (59), Expect = 1.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
+ +N IS V G L+G +GAGKTT +L G
Sbjct: 16 KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG 55
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 26.2 bits (58), Expect = 1.6
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
+S G+ ++G +G+GK+T + + KP++G+ V IR D
Sbjct: 25 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRD 75
>gnl|CDD|236089 PRK07761, PRK07761, DNA polymerase III subunit beta; Validated.
Length = 376
Score = 26.4 bits (59), Expect = 1.6
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
I+ G G GL+G G G+ TT ++L G
Sbjct: 214 IALSTGVGGE-GLIGFEGGGRRTTTRLLDG 242
>gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta
subunit. The beta subunit of the signal recognition
particle receptor (SRP) is a transmembrane GTPase which
anchors the alpha subunit to the endoplasmic reticulum
membrane.
Length = 181
Score = 26.2 bits (58), Expect = 1.7
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 39 LLGLNGAGKTTTF-KMLTGAIKPT 61
+ GL +GKT+ F + TG +K T
Sbjct: 8 IAGLCDSGKTSLFTLLTTGTVKKT 31
>gnl|CDD|240334 PTZ00258, PTZ00258, GTP-binding protein; Provisional.
Length = 390
Score = 26.1 bits (58), Expect = 1.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 38 GLLGLNGAGKTTTFKMLT 55
G++GL GK+TTF L
Sbjct: 25 GIVGLPNVGKSTTFNALC 42
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic
phosphate. In the model species Escherichia coli, a
constitutive transporter for inorganic phosphate, with
low affinity, is also present. The high affinity
transporter that includes this polypeptide is induced
when extracellular phosphate concentrations are low.
The proteins most similar to the members of this family
but not included appear to be amino acid transporters
[Transport and binding proteins, Anions].
Length = 247
Score = 26.1 bits (58), Expect = 1.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
Y K A+ I+ + + + L+G +G GK+T + L
Sbjct: 11 YGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSL 47
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins
in this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may
be involved in replication.
Length = 1198
Score = 26.2 bits (58), Expect = 1.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 41 GLNGAGKTTTFKML 54
G NGAGKTT ++L
Sbjct: 24 GTNGAGKTTLLRLL 37
>gnl|CDD|216936 pfam02223, Thymidylate_kin, Thymidylate kinase.
Length = 186
Score = 26.1 bits (58), Expect = 2.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 41 GLNGAGKTTTFKML 54
GL+GAGKTT ++L
Sbjct: 3 GLDGAGKTTQAELL 16
>gnl|CDD|238542 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
helicases. Helicases couple NTP hydrolysis to the
unwinding of nucleic acid duplexes into their component
strands.
Length = 271
Score = 26.2 bits (58), Expect = 2.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTT 49
P +N+++ G+ +GE L G GKTT
Sbjct: 18 PVLNKLTKGLRKGELIILTAGTGVGKTT 45
>gnl|CDD|233210 TIGR00959, ffh, signal recognition particle protein. This model
represents Ffh (Fifty-Four Homolog), the protein
component that forms the bacterial (and organellar)
signal recognition particle together with a 4.5S RNA.
Ffh is a GTPase homologous to eukaryotic SRP54 and also
to the GTPase FtsY (TIGR00064) that is the receptor for
the signal recognition particle [Protein fate, Protein
and peptide secretion and trafficking].
Length = 428
Score = 26.1 bits (58), Expect = 2.2
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 39 LLGLNGAGKTTT 50
++GL G+GKTTT
Sbjct: 104 MVGLQGSGKTTT 115
>gnl|CDD|172375 PRK13851, PRK13851, type IV secretion system protein VirB11;
Provisional.
Length = 344
Score = 26.0 bits (57), Expect = 2.3
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV 79
L G G+GKTT K L AI P +I D+++LV
Sbjct: 167 LCGPTGSGKTTMSKTLISAIPPQERLI-----TIEDTLELV 202
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 26.1 bits (57), Expect = 2.3
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
P++ K A+N S + + ++G G+GK+T ++ G I +G V +++I
Sbjct: 21 PFEFK-ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAI 75
>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase.
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first
identified as part of the Human Cancer Genome Project.
It maps to chromosome 4q12 and is sometimes referred to
as Arfrp2 (Arf-related protein 2). This is a novel
subfamily identified in human cancers that is
uncharacterized to date.
Length = 164
Score = 25.9 bits (57), Expect = 2.3
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
Query: 40 LGLNGAGKTTTFKMLTG-----AIKPTSG 63
LGL+GAGKT+ L+ ++ PT+G
Sbjct: 5 LGLDGAGKTSLLHSLSSERSLESVVPTTG 33
>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit. G proteins couple
receptors of extracellular signals to intracellular
signaling pathways. The G protein alpha subunit binds
guanyl nucleotide and is a weak GTPase. A set of
residues that are unique to G-alpha as compared to its
ancestor the Arf-like family form a ring of residues
centered on the nucleotide binding site. A Ggamma is
found fused to an inactive Galpha in the Dictyostelium
protein gbqA.
Length = 329
Score = 25.7 bits (57), Expect = 2.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 39 LLGLNGAGKTTTFKML 54
LLG +GK+T K +
Sbjct: 7 LLGAGESGKSTILKQM 22
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 26.1 bits (57), Expect = 2.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 33 RGECFGLLGLNGAGKTTTFKML 54
RG L+G GAGKTTT L
Sbjct: 349 RGGVIALVGPTGAGKTTTIAKL 370
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 26.1 bits (57), Expect = 2.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
Q+ + + E L+G G GKTT + L
Sbjct: 456 QLLWNIQNNEPTLLVGETGTGKTTMIQYLAL 486
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 26.0 bits (57), Expect = 2.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 39 LLGLNGAGKTTTFKMLTG 56
L+G++GAGKTT +L G
Sbjct: 911 LMGVSGAGKTTLMDVLAG 928
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 25.7 bits (57), Expect = 2.5
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 41 GLNGAGKTT 49
G NG+GKTT
Sbjct: 23 GRNGSGKTT 31
>gnl|CDD|206686 cd01899, Ygr210, Ygr210 GTPase. Ygr210 is a member of Obg-like
family and present in archaea and fungi. They are
characterized by a distinct glycine-rich motif
immediately following the Walker B motif. The Ygr210
and YyaF/YchF subfamilies appear to form one major
branch of the Obg-like family. Among eukaryotes, the
Ygr210 subfamily is represented only in fungi. These
fungal proteins form a tight cluster with their
archaeal orthologs, which suggests the possibility of
horizontal transfer from archaea to fungi.
Length = 318
Score = 25.7 bits (57), Expect = 2.7
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 11/41 (26%)
Query: 38 GLLGLNGAGKTTTFKMLTGA-----------IKPTSGNAYV 67
GL+G GK+T F T A I P G YV
Sbjct: 2 GLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVGYV 42
>gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases)
[Translation, ribosomal structure and biogenesis].
Length = 697
Score = 25.7 bits (57), Expect = 2.7
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 7/38 (18%)
Query: 36 CFGLLGLNGAGKTTT---FKMLTGAIKP----TSGNAY 66
G++ AGKTT TG I G A
Sbjct: 12 NIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAAT 49
>gnl|CDD|110677 pfam01695, IstB_IS21, IstB-like ATP binding protein. This
protein contains an ATP/GTP binding P-loop motif. It is
found associated with IS21 family insertion sequences.
The function of this protein is unknown, but it may
perform a transposase function.
Length = 178
Score = 25.7 bits (57), Expect = 2.8
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
Query: 13 LETFPYDTKPAVNQ--------ISFGVGRGECFGLLGLNGAGKT 48
LE F + +++ + + + + E LLG G GKT
Sbjct: 19 LEDFDFRAARGLDRRLIAELAGLDW-IEQAENLLLLGPPGVGKT 61
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 25.7 bits (57), Expect = 2.8
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 27 ISF-GVGRGECFGLLGLNGAGKTTTFKMLTGA 57
I F G+ F + G GAGK+T +T A
Sbjct: 20 IDFTGLDNNGLFLICGPTGAGKSTILDAITYA 51
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 25.8 bits (57), Expect = 2.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 32 GRGECFGLLGLNGAGKTTTFKML 54
G+ + + G +GAGKT T KML
Sbjct: 86 GKSQSILVSGESGAGKTETTKML 108
>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated.
Length = 451
Score = 25.5 bits (56), Expect = 3.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 31 VGRGECFGLLGLNGAGKTTTFKMLT 55
VGRG+ GL G GK+ M+T
Sbjct: 165 VGRGQRLGLFAGTGVGKSVLLGMMT 189
>gnl|CDD|173185 PRK14722, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 374
Score = 25.5 bits (55), Expect = 3.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 33 RGECFGLLGLNGAGKTTT 50
RG F L+G G GKTTT
Sbjct: 136 RGGVFALMGPTGVGKTTT 153
>gnl|CDD|180682 PRK06761, PRK06761, hypothetical protein; Provisional.
Length = 282
Score = 25.5 bits (56), Expect = 3.5
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 41 GLNGAGKTTTFKML 54
GL G GK+TT KML
Sbjct: 10 GLPGFGKSTTAKML 23
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 25.4 bits (56), Expect = 3.6
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV----MN 69
Y I+ + GE +G +G GK+T +M+ G TSG+ ++ MN
Sbjct: 13 YGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMN 68
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 25.4 bits (56), Expect = 3.8
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 15 TFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+F Y D + I+ V L+G G+GK+T +L G T G + +
Sbjct: 347 SFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPL 405
>gnl|CDD|224119 COG1198, PriA, Primosomal protein N' (replication factor Y) -
superfamily II helicase [DNA replication, recombination,
and repair].
Length = 730
Score = 25.4 bits (56), Expect = 3.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKT 48
AV I +G F L G+ G+GKT
Sbjct: 206 AVEAILSSLGGFAPFLLDGVTGSGKT 231
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 25.1 bits (55), Expect = 4.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
K + ++ V GE ++G NG+GK+T L G
Sbjct: 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG 49
>gnl|CDD|218745 pfam05783, DLIC, Dynein light intermediate chain (DLIC). This
family consists of several eukaryotic dynein light
intermediate chain proteins. The light intermediate
chains (LICs) of cytoplasmic dynein consist of multiple
isoforms, which undergo post-translational modification
to produce a large number of species. DLIC1 is known to
be involved in assembly, organisation, and function of
centrosomes and mitotic spindles when bound to
pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2
that may play a role in maintaining Golgi organisation
by binding cytoplasmic dynein 2 to its Golgi-associated
cargo.
Length = 490
Score = 25.2 bits (55), Expect = 4.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSG 63
+LG +G+GKTT L G P G
Sbjct: 50 VLGEDGSGKTTLIAKLQGVEHPKKG 74
>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small
GTPases. Yeast SAR1 is an essential gene required for
transport of secretory proteins from the endoplasmic
reticulum to the Golgi apparatus.
Length = 184
Score = 24.9 bits (54), Expect = 4.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 39 LLGLNGAGKTTTFKML 54
LGL+ AGKTT ML
Sbjct: 22 FLGLDNAGKTTLLHML 37
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 24.9 bits (55), Expect = 4.3
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 41 GLNGAGKTTTFKML 54
G++G+GK+T K L
Sbjct: 6 GVSGSGKSTVGKAL 19
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 258
Score = 25.0 bits (54), Expect = 4.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
Y K A+ +S + + L+G +G GK+T + L
Sbjct: 22 YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCL 58
>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1). Arl1 subfamily.
Arl1 (Arf-like 1) localizes to the Golgi complex, where
it is believed to recruit effector proteins to the
trans-Golgi network. Like most members of the Arf
family, Arl1 is myristoylated at its N-terminal helix
and mutation of the myristoylation site disrupts Golgi
targeting. In humans, the Golgi-localized proteins
golgin-97 and golgin-245 have been identified as Arl1
effectors. Golgins are large coiled-coil proteins found
in the Golgi, and these golgins contain a C-terminal
GRIP domain, which is the site of Arl1 binding.
Additional Arl1 effectors include the GARP
(Golgi-associated retrograde protein)/VFT (Vps53)
vesicle-tethering complex and Arfaptin 2. Arl1 is not
required for exocytosis, but appears necessary for
trafficking from the endosomes to the Golgi. In
Drosophila zygotes, mutation of Arl1 is lethal, and in
the host-bloodstream form of Trypanosoma brucei, Arl1
is essential for viability.
Length = 158
Score = 25.1 bits (55), Expect = 4.4
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 39 LLGLNGAGKTT 49
+LGL+GAGKTT
Sbjct: 4 ILGLDGAGKTT 14
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 25.2 bits (55), Expect = 4.5
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTTFKM----LTGAIKPTSG 63
LG +GAGKTT+ K L A G
Sbjct: 91 FLGRSGAGKTTSCKHALEYLALAAGSVDG 119
>gnl|CDD|164843 PHA00821, PHA00821, hypothetical protein.
Length = 295
Score = 25.1 bits (54), Expect = 4.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 50 TFKMLTGAIKPTSGNAYVMNHSIRD 74
TF +TG+ P SG AYV + +I D
Sbjct: 88 TFTGVTGSTGPLSGTAYVTDGAIAD 112
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 25.0 bits (55), Expect = 4.5
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 20 TKPAVNQISFGVGR-GECFGLLGLNGAGKTT 49
K + +S GV + GE ++G +GAGKTT
Sbjct: 37 RKHLLKNVS-GVAKPGELLAVMGSSGAGKTT 66
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 251
Score = 24.9 bits (54), Expect = 4.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
Y K A+N I+ + + L+G +G GK+T + L
Sbjct: 14 YGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCL 50
>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family.
Ferrous iron transport protein B (FeoB) subfamily. E.
coli has an iron(II) transport system, known as feo,
which may make an important contribution to the iron
supply of the cell under anaerobic conditions. FeoB has
been identified as part of this transport system. FeoB
is a large 700-800 amino acid integral membrane
protein. The N terminus contains a P-loop motif
suggesting that iron transport may be ATP dependent.
Length = 159
Score = 24.7 bits (55), Expect = 4.9
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69
L+G GKTT F LTGA V N
Sbjct: 2 LVGNPNVGKTTLFNALTGA------RQKVGN 26
>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated.
Length = 444
Score = 25.0 bits (55), Expect = 5.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 31 VGRGECFGLLGLNGAGKTTTFKMLT 55
VG+G+ GL +G GK+ M+T
Sbjct: 159 VGKGQRMGLFAGSGVGKSVLLGMMT 183
>gnl|CDD|234608 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 24.7 bits (55), Expect = 5.6
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 39 LLGLNGAGKT 48
L+G NG GKT
Sbjct: 28 LVGENGQGKT 37
>gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed.
Length = 668
Score = 24.7 bits (55), Expect = 5.9
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 44 GAGKTTTFKML---TGAIK 59
GAGKTT + + TGAI
Sbjct: 5 GAGKTTLTEAILFYTGAIH 23
>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and
Arl13. Arl2l1 (Arl2-like protein 1) and Arl13 form a
subfamily of the Arf family of small GTPases. Arl2l1
was identified in human cells during a search for the
gene(s) responsible for Bardet-Biedl syndrome (BBS).
Like Arl6, the identified BBS gene, Arl2l1 is proposed
to have cilia-specific functions. Arl13 is found on the
X chromosome, but its expression has not been
confirmed; it may be a pseudogene.
Length = 167
Score = 24.7 bits (54), Expect = 6.1
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 38 GLLGLNGAGKTTTFKMLTGAI----KPTSG 63
+GL+ AGKTT L G I PT G
Sbjct: 3 LTVGLDNAGKTTLVSALQGEIPKKVAPTVG 32
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit,
DevA family. Members of this protein family are found
mostly in the Cyanobacteria, but also in the
Planctomycetes. Cyanobacterial examples are involved in
heterocyst formation, by which some fraction of members
of the colony undergo a developmental change and become
capable of nitrogen fixation. The DevBCA proteins are
thought export of either heterocyst-specific
glycolipids or an enzyme essential for formation of the
laminated layer found in heterocysts.
Length = 220
Score = 24.6 bits (54), Expect = 6.2
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
I+ + GE L G +G+GKTT ++ G G+ V+ +
Sbjct: 24 INLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELY 70
>gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional.
Length = 175
Score = 24.6 bits (54), Expect = 6.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 31 VGRGECFGLLGLNGAGKTT 49
RG GL+GAGKTT
Sbjct: 1 KQRGVTVWFTGLSGAGKTT 19
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 253
Score = 24.8 bits (54), Expect = 6.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTT 49
Y K A+ I+ + + L+G +G GK+T
Sbjct: 16 YGEKHALYDITISIPKNRVTALIGPSGCGKST 47
>gnl|CDD|216586 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that
catalyzes the phosphorylation of adenylylsulphate to
3'-phosphoadenylylsulfate. This domain contains an ATP
binding P-loop motif.
Length = 157
Score = 24.6 bits (54), Expect = 6.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 33 RGECFGLLGLNGAGKTT 49
RG GL+G+GK+T
Sbjct: 1 RGCTIWFTGLSGSGKST 17
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily. Many of the proteins in this family
are conjugative transfer proteins.
Length = 316
Score = 24.7 bits (54), Expect = 6.9
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 39 LLGLNGAGKTTTFKMLT 55
++G +G+GK+T K+L
Sbjct: 6 IVGPSGSGKSTLLKLLA 22
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 24.5 bits (53), Expect = 7.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 14 ETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59
ET + +N ++ GE +LG +G+GK+T L G I+
Sbjct: 74 ETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ 119
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 254
Score = 24.2 bits (52), Expect = 7.9
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
+L F D K A+N I+ + + L+G +G GK+T + L
Sbjct: 12 NLNLFYTDFK-ALNNINIKILKNSITALIGPSGCGKSTFLRTL 53
>gnl|CDD|206673 cd01886, EF-G, Elongation factor G (EF-G) family involved in both
the elongation and ribosome recycling phases of protein
synthesis. Translocation is mediated by EF-G (also
called translocase). The structure of EF-G closely
resembles that of the complex between EF-Tu and tRNA.
This is an example of molecular mimicry; a protein
domain evolved so that it mimics the shape of a tRNA
molecule. EF-G in the GTP form binds to the ribosome,
primarily through the interaction of its EF-Tu-like
domain with the 50S subunit. The binding of EF-G to the
ribosome in this manner stimulates the GTPase activity
of EF-G. On GTP hydrolysis, EF-G undergoes a
conformational change that forces its arm deeper into
the A site on the 30S subunit. To accommodate this
domain, the peptidyl-tRNA in the A site moves to the P
site, carrying the mRNA and the deacylated tRNA with
it. The ribosome may be prepared for these
rearrangements by the initial binding of EF-G as well.
The dissociation of EF-G leaves the ribosome ready to
accept the next aminoacyl-tRNA into the A site. This
group contains both eukaryotic and bacterial members.
Length = 270
Score = 24.4 bits (54), Expect = 8.2
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 45 AGKTT-TFKML--TGAIKPT----SGNAYVMNHSIRDSMDLVR 80
AGKTT T ++L TG I G A M D M+ R
Sbjct: 10 AGKTTTTERILYYTGRIHKIGEVHGGGA-TM-----DWMEQER 46
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 24.5 bits (53), Expect = 8.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 31 VGRGECFGLLGLNGAGKTTTFKMLT 55
+G+G+ GL+ +G GK+ M+T
Sbjct: 152 IGKGQRVGLMAGSGVGKSVLLGMIT 176
>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases.
Arl10-like subfamily. Arl9/Arl10 was identified from a
human cancer-derived EST dataset. No functional
information about the subfamily is available at the
current time, but crystal structures of human Arl10b
and Arl10c have been solved.
Length = 159
Score = 24.2 bits (53), Expect = 8.5
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 38 GLLGLNGAGKTTTFKMLTG 56
L+GL +GKTT ++
Sbjct: 3 TLVGLQNSGKTTLVNVIAS 21
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of
non-transporter proteins. ABC-type Class 2 contains
systems involved in cellular processes other than
transport. These families are characterized by the fact
that the ABC subunit is made up of duplicated, fused
ABC modules (ABC2). No known transmembrane proteins or
domains are associated with these proteins.
Length = 162
Score = 23.9 bits (52), Expect = 9.5
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTFK 52
N ++FG G + G NG+GK+T
Sbjct: 13 PNDVTFG--EGSLTIITGPNGSGKSTILD 39
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 24.3 bits (53), Expect = 9.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 34 GECFGLLGLNGAGKTTTFKMLTG 56
G L+G +GAGKTT +L
Sbjct: 789 GTLTALMGASGAGKTTLLNVLAE 811
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.392
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,771,525
Number of extensions: 281024
Number of successful extensions: 859
Number of sequences better than 10.0: 1
Number of HSP's gapped: 859
Number of HSP's successfully gapped: 413
Length of query: 80
Length of database: 10,937,602
Length adjustment: 49
Effective length of query: 31
Effective length of database: 8,764,256
Effective search space: 271691936
Effective search space used: 271691936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (23.9 bits)