RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7220
(80 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO
joint center for structural genomics, JCSG, protein
structu initiative, PSI; 2.10A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 256
Score = 92.2 bits (230), Expect = 6e-25
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
K + ISF + GE FGL+G NGAGKTTT ++++ IKP+SG V ++ +
Sbjct: 25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPH 84
Query: 78 LVR 80
VR
Sbjct: 85 EVR 87
>1sgw_A Putative ABC transporter; structural genomics, P protein
structure initiative, southeast collaboratory for S
genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP:
c.37.1.12
Length = 214
Score = 89.1 bits (222), Expect = 4e-24
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
YD KP + +I+ + +G G NG GKTT K ++ +KP G I
Sbjct: 20 YD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK 75
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 70.3 bits (173), Expect = 2e-16
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
K + +IS+ + +G+ + L GLNGAGKTT +L TSG +
Sbjct: 28 GRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGK 83
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 67.5 bits (166), Expect = 1e-15
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
A++ +S V +G+ ++G NG+GK+T ++TG +K G Y N I
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics,
cell membrane, cobalt transport, hydrolase, ION
transport; 2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 63.7 bits (156), Expect = 4e-14
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 15 TFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
+ Y D A+ I+ + RGE +LG NG GK+T F+ G +KP+SG N I
Sbjct: 14 NYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPID 73
Query: 74 DS 75
S
Sbjct: 74 YS 75
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 60.7 bits (148), Expect = 4e-13
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 15 TFPYDTKPAV-NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------AY 66
F Y + + Q++F + +G+ +LG NG GK+T +L G +P G +
Sbjct: 11 GFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGF 70
Query: 67 V 67
V
Sbjct: 71 V 71
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 59.6 bits (145), Expect = 2e-12
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+ + +GE G++G NG GKTT KML G +PT G
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 411
Score = 55.8 bits (135), Expect = 4e-11
Identities = 16/51 (31%), Positives = 20/51 (39%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65
Y V V G G++G NG GKTT K+L G + P
Sbjct: 98 VHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED 148
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 58.6 bits (143), Expect = 2e-12
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
Y A+ I V RG+ L+G NGAGKTTT + G ++ G I
Sbjct: 16 YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI 70
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 58.8 bits (143), Expect = 4e-12
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+ + +GE G++G NG GKTT KML G +PT G
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 341
Score = 50.0 bits (120), Expect = 4e-09
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60
Y V V G G++G NG GK+T K+L G + P
Sbjct: 28 VHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIP 73
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 58.9 bits (142), Expect = 4e-12
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
+P +KP + I+F ++G NGAGK+T +LTG + PTSG
Sbjct: 680 QYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE 729
Score = 50.0 bits (119), Expect = 4e-09
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 57
+ Y K +N+ + R +G+ G NG GK+T + +
Sbjct: 442 SLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG 484
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 58.5 bits (142), Expect = 5e-12
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+N E ++G NG GKTT K+L GA+KP G
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG 407
Score = 55.0 bits (133), Expect = 6e-11
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
T Y G+ GL+G NG GK+T K+L G KP G
Sbjct: 84 THRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 57.6 bits (140), Expect = 6e-12
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV--MNHSIRD 74
K A+ +S + GEC + G G+GK+T +++ G I+PTSG+ +
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE 75
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 57.3 bits (139), Expect = 1e-11
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
+ + GE G+LG NG GKTT ++L G I G+ +
Sbjct: 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS 333
Score = 48.5 bits (116), Expect = 2e-08
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 15 TFPYDTKPAVNQISFGVGR-GECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
Y + G+LG NG GKTT K+L G I P G+
Sbjct: 6 IHRYKVN-GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD 55
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 53.9 bits (130), Expect = 2e-10
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+ ++ I+ V GE +LG NG+GKTT + ++G + P SGN ++ +R
Sbjct: 18 RFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRK 69
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 52.6 bits (127), Expect = 5e-10
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+ P +N IS + GE ++G +G GKTT + L G +P SG
Sbjct: 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG 59
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 51.0 bits (123), Expect = 2e-09
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+++ +S V GE F +LG GAGKT +++ G P SG
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG 55
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 50.2 bits (121), Expect = 3e-09
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+ +S V GE L+G NGAGK+T + G + G+ +
Sbjct: 13 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEA 65
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type
I ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 48.9 bits (117), Expect = 1e-08
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 15 TFPYDTKP--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
F T+ A+N +S V G+ +G++G +GAGK+T + + +PT G+ V +
Sbjct: 33 VFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL 92
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 48.4 bits (116), Expect = 2e-08
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
+V +SF + GE GLLG +G+GKTT +++ G +PT G
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG 70
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 44.6 bits (106), Expect = 4e-07
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY----VMNH 70
F A++ ++ + GE FG+LG +GAGKTT +++ G P++G Y ++
Sbjct: 12 VFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS 71
Query: 71 SIRDSMD 77
+ + +
Sbjct: 72 NGKLIVP 78
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 42.2 bits (100), Expect = 2e-06
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 15 TFPYDTK--PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
TF Y + PA+ I+ + G+ L+G +G+GK+T ++T G+ + H +
Sbjct: 348 TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL 407
Query: 73 RD 74
R+
Sbjct: 408 RE 409
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 42.2 bits (100), Expect = 2e-06
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 15 TFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
F Y + + +SF V G+ L+G +GAGK+T ++L +SG + I
Sbjct: 60 HFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDIS 119
Query: 74 D 74
Sbjct: 120 Q 120
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus
lactis} SCOP: c.37.1.12
Length = 243
Score = 42.1 bits (100), Expect = 2e-06
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 15 TFPYDTKPAV-NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
F YD + ISF G +G GK+T F +L +PT+G + I
Sbjct: 8 DFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID 67
Query: 74 D 74
+
Sbjct: 68 N 68
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 42.2 bits (100), Expect = 3e-06
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 15 TFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
TF Y KPA++ +SF + +G+ L+G +G+GK+T + T SG+ + H +
Sbjct: 348 TFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV 407
Query: 73 RD 74
RD
Sbjct: 408 RD 409
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein;
membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP:
c.37.1.12
Length = 240
Score = 40.2 bits (95), Expect = 1e-05
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
+ F +G + LLG GAGK+ +++ G +KP G +
Sbjct: 18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL 57
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 39.2 bits (92), Expect = 3e-05
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------AYV- 67
F P + I+F + RG+ + G GAGKT+ M+ G ++P+ G ++
Sbjct: 46 FSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCS 105
Query: 68 -----MNHSIRD 74
M +I++
Sbjct: 106 QNSWIMPGTIKE 117
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 38.6 bits (91), Expect = 4e-05
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 15 TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
F Y D+ ++ I+ + +GE G++G +G+GK+T K++ P +G + H +
Sbjct: 14 RFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 73
Query: 73 RD 74
Sbjct: 74 AL 75
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 38.3 bits (90), Expect = 6e-05
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 15 TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+F Y + P + I+ + +GE +G++G GK+T ++ TSG + H+I
Sbjct: 346 SFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI 405
Query: 73 RD 74
+D
Sbjct: 406 KD 407
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 37.9 bits (89), Expect = 7e-05
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 15/75 (20%)
Query: 15 TFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------A 65
T ++ P + I+F + RG+ + G GAGKT+ M+ G ++P+ G +
Sbjct: 13 TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS 72
Query: 66 YV------MNHSIRD 74
+ M +I++
Sbjct: 73 FCSQFSWIMPGTIKE 87
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 37.9 bits (89), Expect = 8e-05
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 15 TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
F Y +T P ++ ++F V G +LG G+GK+T ++ I P G V +
Sbjct: 348 EFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407
Query: 73 RD 74
R
Sbjct: 408 RT 409
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 37.5 bits (88), Expect = 1e-04
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 15 TFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------A 65
TF + P +N I+F + G ++G G GK++ L + G+ A
Sbjct: 10 TFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVA 69
Query: 66 YV------MNHSIRD 74
YV N S+R+
Sbjct: 70 YVPQQAWIQNDSLRE 84
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 37.2 bits (87), Expect = 1e-04
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 15 TFPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKML------TGAIK 59
F Y + I+F + G L+G G+GK+T K+L G IK
Sbjct: 24 NFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIK 77
>2it1_A 362AA long hypothetical maltose/maltodextrin transport
ATP-binding protein; structural genomics, NPPSFA; 1.94A
{Pyrococcus horikoshii}
Length = 362
Score = 37.2 bits (87), Expect = 1e-04
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY----VMNH 70
+ A+N I+ + GE LLG +G+GK+T + G KPTSG Y +
Sbjct: 13 FGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTE 69
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 36.9 bits (86), Expect = 2e-04
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 6 LQTVDSHLE----TFPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58
+ +LE F Y ++ V ++ V G+ L+G +G GK+TT +++
Sbjct: 381 PDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440
Query: 59 KPTSGNAYVMNHSIRD 74
P G + IR
Sbjct: 441 DPLDGMVSIDGQDIRT 456
Score = 36.6 bits (85), Expect = 3e-04
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 15 TFPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
F Y T+P++ +S V +G+ L+G +G GK+T ++L P +G+ ++
Sbjct: 1037 VFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE 1096
Query: 72 IRD 74
I+
Sbjct: 1097 IKQ 1099
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 36.4 bits (85), Expect = 3e-04
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 15 TFPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
+F Y P V ++F + G+ L+G NG+GK+T +L +PT G +
Sbjct: 23 SFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEP 82
Query: 72 IRD 74
+
Sbjct: 83 LVQ 85
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 35.3 bits (82), Expect = 6e-04
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY----VMNHS 71
+ AV ++S V GE LLG +G GKTTT +M+ G +P+ G Y ++
Sbjct: 13 FGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADP 70
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 35.3 bits (82), Expect = 7e-04
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY----VMNH 70
+ AVN+++ + GE LLG +G GKTTT +M+ G +PT G Y + +
Sbjct: 21 FGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTY 77
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 34.7 bits (80), Expect = 9e-04
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 39 LLGLNGAGKTTTFKMLTG----AIKPTSGN 64
+ G +GKT+ +LT +
Sbjct: 53 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEP 82
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 34.7 bits (80), Expect = 0.001
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 39 LLGLNGAGKTTTFKMLT-GAIKPT 61
+ G +GKT+ +LT +++PT
Sbjct: 17 IAGPQNSGKTSLLTLLTTDSVRPT 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 34.1 bits (79), Expect = 0.002
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 15 TFPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
F Y +P V S + G L+G +G+GK+T +L P SG + H
Sbjct: 348 HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHD 407
Query: 72 IRD 74
IR
Sbjct: 408 IRQ 410
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding
protein; structural genomics; 1.70A {Aquifex aeolicus}
PDB: 2pcl_A
Length = 224
Score = 34.0 bits (79), Expect = 0.002
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+ IS V +GE ++G +G+GK+T +L PT G ++ +
Sbjct: 14 IRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDY 70
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.002
Identities = 5/24 (20%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 5 SLQTVDSHLETF-PYDTKP--AVN 25
+L+ + + L+ + D+ P A+
Sbjct: 21 ALKKLQASLKLYAD-DSAPALAIK 43
Score = 32.6 bits (73), Expect = 0.006
Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 50 TFKMLTGAIK---PTSGNAYVMNHSI 72
K L ++K S A + ++
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATM 46
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport,
alpha and beta proteins (A/B) TM0421, structural
genomics, NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 33.7 bits (78), Expect = 0.002
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY----VMNH 70
+ AV+ +SF V GE LLG +G GKTTT ML G KPTSG Y ++N
Sbjct: 13 FGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVND 69
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 33.2 bits (76), Expect = 0.004
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 39 LLGLNGAGKTTTFKML-TGAIKPTS 62
+GL +GKT F L TG + T
Sbjct: 12 FVGLCDSGKTLLFVRLLTGQYRDTQ 36
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 31.7 bits (72), Expect = 0.014
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGN---AYVMN 69
L+G G GKT T+K + A+ G+ YV++
Sbjct: 928 LVGKAGCGKTATWKTVIDAMAIFDGHANVVYVID 961
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 30.7 bits (70), Expect = 0.025
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTTFKML----TGAIKPTSG 63
LGL+ AGKTT ML G PT
Sbjct: 30 FLGLDNAGKTTLLHMLKDDRLGQHVPTLH 58
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 30.2 bits (69), Expect = 0.033
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTTFKMLTG----AIKPTSG 63
LGL+ AGKTT ML ++PT
Sbjct: 28 FLGLDNAGKTTLLHMLKNDRLATLQPTWH 56
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 30.2 bits (69), Expect = 0.040
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTTFKMLTG----AIKPTSG 63
LLGL+ AGKTT K L I PT G
Sbjct: 21 LLGLDNAGKTTLLKQLASEDISHITPTQG 49
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 29.9 bits (68), Expect = 0.048
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTTFKMLTG----AIKPTSG 63
++GL+ AGKTT + PT G
Sbjct: 26 IVGLDNAGKTTILYQFSMNEVVHTSPTIG 54
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 29.8 bits (68), Expect = 0.051
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 15 TFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
F YD KP + I+F + G+ L+G G+GKTT +L G V IR
Sbjct: 361 WFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIR 420
Query: 74 D 74
Sbjct: 421 K 421
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 29.8 bits (68), Expect = 0.052
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-KPTSGNAYVMNHSIRD 74
A+ ++ + GE ++G +G+GK+T ++ G + KPT G Y+ N D
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTND 71
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 29.9 bits (68), Expect = 0.053
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTTFKMLTG----AIKPTSG 63
+LGL+ AGKTT K G I PT G
Sbjct: 23 MLGLDNAGKTTILKKFNGEDVDTISPTLG 51
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 29.7 bits (67), Expect = 0.072
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 39 LLGLNGAGKTTT 50
L G GAGKTTT
Sbjct: 110 LFGSTGAGKTTT 121
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 29.5 bits (67), Expect = 0.073
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTT-FKMLTG---AIKPTSG 63
++GL+ AGKTT +K+ G PT G
Sbjct: 5 MVGLDAAGKTTILYKLKLGEIVTTIPTIG 33
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 29.1 bits (66), Expect = 0.080
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTT-FKMLTGAIK---PTSG 63
+LGL+GAGKTT +++ G + PT G
Sbjct: 12 ILGLDGAGKTTILYRLQVGEVVTTIPTIG 40
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, binding; 1.70A {Thermus
thermophilus} PDB: 2d2f_A*
Length = 250
Score = 29.0 bits (66), Expect = 0.090
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP----TSGNAYVMNHSIRD 74
D + + ++ V +GE L+G NGAGK+T K+L G P G + +I +
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVERGEILLDGENILE 71
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 29.4 bits (66), Expect = 0.093
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 41 GLNGAGKTTT 50
G+NG GKTTT
Sbjct: 300 GVNGVGKTTT 309
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding,
transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 187
Score = 29.1 bits (66), Expect = 0.093
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTTFKMLTG----AIKPTSG 63
++GL+ AGKTT + PT G
Sbjct: 21 IVGLDNAGKTTILYQFSMNEVVHTSPTIG 49
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.10
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 36/100 (36%)
Query: 2 LVTSLQTV--DSHLETFPY----DTKPAVNQI--SFGVGRGECF-----GLL-------- 40
L++ ++T + T Y D NQ+ + V R + + LL
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 41 ---GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
G+ G+GKT + + +++ ++ MD
Sbjct: 154 LIDGVLGSGKTW----VALDV--------CLSYKVQCKMD 181
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 29.1 bits (66), Expect = 0.10
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTTFKMLTG----AIKPTSG 63
+LGL+ AGKT+ L PT G
Sbjct: 27 MLGLDNAGKTSILYRLHLGDVVTTVPTVG 55
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 28.8 bits (65), Expect = 0.10
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTT-FKMLTG---AIKPTSG 63
++GL+ AGKTT +K+ G PT G
Sbjct: 34 MVGLDAAGKTTILYKLKLGEIVTTIPTIG 62
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding,
protein binding; HET: GDP; 3.17A {Saccharomyces
cerevisiae} SCOP: c.37.1.8
Length = 183
Score = 28.8 bits (65), Expect = 0.11
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 39 LLGLNGAGKTTT-FKMLTG---AIKPTSG 63
+LGL+GAGKTT +++ G KPT G
Sbjct: 23 ILGLDGAGKTTILYRLQIGEVVTTKPTIG 51
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 29.1 bits (65), Expect = 0.12
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGN---AYVMN 69
++G +G GKTT++++ AI+ A+VM+
Sbjct: 911 MVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMD 944
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 28.7 bits (65), Expect = 0.12
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP----TSGNAYVMNHSIRD 74
+ K + +S V GE ++G NG+GK+T L G + T G +
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG--REDYEVTGGTVEFKGKDLLA 88
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 28.4 bits (64), Expect = 0.17
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 12/49 (24%)
Query: 2 LVTSLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTT 50
++ L +S E KPAV I +G+NG GKTT+
Sbjct: 137 VLEMLAKKNSKTELQLGFRKPAV--IMI----------VGVNGGGKTTS 173
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 28.4 bits (64), Expect = 0.20
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 39 LLGLNGAGKTTT-FKMLTG-----AIKPTSG 63
LGL+ +GKTT K+ I PT G
Sbjct: 26 CLGLDNSGKTTIINKLKPSNAQSQNILPTIG 56
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 28.3 bits (64), Expect = 0.20
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
+S G+ ++G +G+GK+T + + KP+ G V +I D
Sbjct: 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRD 75
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 27.5 bits (62), Expect = 0.29
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 39 LLGLNGAGKTTT-FKMLTG----AIKPTSG 63
L+GL +GKTT + +G + PT G
Sbjct: 27 LVGLQYSGKTTFVNVIASGQFNEDMIPTVG 56
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding,
signal recognition particle, GTP-binding, RNA-binding;
2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Length = 432
Score = 27.9 bits (63), Expect = 0.30
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 39 LLGLNGAGKTTT 50
L+G+ G+GKTTT
Sbjct: 104 LVGIQGSGKTTT 115
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition
particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A
{Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Length = 433
Score = 27.9 bits (63), Expect = 0.30
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 39 LLGLNGAGKTTT 50
L+G+ G+GKTTT
Sbjct: 102 LVGVQGSGKTTT 113
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 27.7 bits (61), Expect = 0.31
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 39 LLGLNGAGKTTTFKML--------TGAIKPTSG 63
L+G +G+GK++ ++ T + T
Sbjct: 8 LMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID 40
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein
transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Length = 320
Score = 27.5 bits (62), Expect = 0.31
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 41 GLNGAGKTTT 50
G+NG GKTT+
Sbjct: 112 GVNGTGKTTS 121
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 27.5 bits (62), Expect = 0.32
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 41 GLNGAGKTTT 50
G+NG GKTTT
Sbjct: 109 GVNGVGKTTT 118
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A
{Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB:
1j8y_F
Length = 297
Score = 27.5 bits (62), Expect = 0.32
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 39 LLGLNGAGKTTT 50
L+G+ G GKTTT
Sbjct: 103 LVGVQGTGKTTT 114
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 27.6 bits (62), Expect = 0.33
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 41 GLNGAGKTTT 50
G NG+GKTTT
Sbjct: 136 GFNGSGKTTT 145
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 27.5 bits (62), Expect = 0.33
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 41 GLNGAGKTTT 50
G+NG GKTT+
Sbjct: 111 GVNGTGKTTS 120
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 27.6 bits (61), Expect = 0.33
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKP 60
L+GL +GK++ K++ + P
Sbjct: 25 LMGLRRSGKSSIQKVVFHKMSP 46
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
translocation, GTP-binding, nucleotide-binding, protein
transport; 1.75A {Arabidopsis thaliana}
Length = 302
Score = 27.5 bits (62), Expect = 0.33
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 41 GLNGAGKTTT 50
G+NG GKTT+
Sbjct: 107 GVNGGGKTTS 116
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M
domain, RNA-binding, signal sequence-binding,
helix-turn-helix, protein targeting; 3.20A {Thermus
aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB:
2iy3_A
Length = 425
Score = 27.5 bits (62), Expect = 0.35
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 39 LLGLNGAGKTTT 50
L+GL G+GKTTT
Sbjct: 103 LVGLQGSGKTTT 114
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 27.5 bits (61), Expect = 0.36
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 37 FGLLGLNGAGKTTTF 51
++G NG+GK++ F
Sbjct: 28 VAIIGENGSGKSSIF 42
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal
recognition particle, SRP-GTPase, protein targeting,
cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus
furiosus}
Length = 443
Score = 27.5 bits (62), Expect = 0.38
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 39 LLGLNGAGKTTT 50
++G+ G+GKTTT
Sbjct: 105 MVGIQGSGKTTT 116
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 27.5 bits (61), Expect = 0.41
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 37 FGLLGLNGAGKTTTF 51
+ G NGAGK++ F
Sbjct: 26 TVVEGPNGAGKSSLF 40
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 27.6 bits (60), Expect = 0.42
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69
L G +GAGKTT ++ K GN +++
Sbjct: 37 LGGQSGAGKTTIHRIK---QKEFQGNIVIID 64
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 27.3 bits (61), Expect = 0.45
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 37 FGLLGLNGAGKTT 49
++G NG+GK++
Sbjct: 26 NLIIGQNGSGKSS 38
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA
binding protein, hydrolase, gtpas; HET: GCP; 3.94A
{Escherichia coli} PDB: 2j28_9
Length = 433
Score = 27.1 bits (61), Expect = 0.51
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 39 LLGLNGAGKTTT 50
+ GL GAGKTT+
Sbjct: 105 MAGLQGAGKTTS 116
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
ultrahigh resolution, protein transport; 1.10A {Thermus
aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A
1ffh_A 2ng1_A*
Length = 295
Score = 27.1 bits (61), Expect = 0.52
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 39 LLGLNGAGKTTT 50
L+GL G+GKTTT
Sbjct: 103 LVGLQGSGKTTT 114
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 27.3 bits (60), Expect = 0.52
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPT 61
L+G+ GK++ K++ ++P
Sbjct: 4 LMGVRRCGKSSICKVVFHNMQPL 26
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB:
2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 27.2 bits (61), Expect = 0.53
Identities = 10/58 (17%), Positives = 25/58 (43%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
+ + + I+ + GE ++G +G+GK+T + L G + +++
Sbjct: 34 FGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAK 91
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus}
PDB: 3h0k_A
Length = 179
Score = 26.8 bits (59), Expect = 0.58
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 37 FGLLGLNGAGKTTTFKML 54
+ G+ G+GK+ K+L
Sbjct: 4 ILITGMPGSGKSEFAKLL 21
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 27.2 bits (59), Expect = 0.59
Identities = 2/21 (9%), Positives = 7/21 (33%)
Query: 32 GRGECFGLLGLNGAGKTTTFK 52
+ + F + + + K
Sbjct: 43 SQNKLFYITNADDSTKFQLVN 63
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase,
shikimat ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 27.0 bits (60), Expect = 0.59
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 39 LLGLNGAGKTTTFKML 54
L+G+ G+GKTT K++
Sbjct: 53 LVGMMGSGKTTVGKIM 68
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 26.9 bits (59), Expect = 0.64
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 23 AVNQI-SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59
A N + + + G G G TT K + A+
Sbjct: 33 AFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALI 70
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 26.8 bits (60), Expect = 0.68
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 39 LLGLNGAGKTTT 50
+GL G+GKTTT
Sbjct: 106 FVGLQGSGKTTT 117
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 26.5 bits (59), Expect = 1.0
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 11/42 (26%)
Query: 38 GLLGLNGAGKTTTFKMLTGA-----------IKPTSGNAYVM 68
G++G GK+T F T I+ G Y +
Sbjct: 4 GVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAI 45
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 26.0 bits (58), Expect = 1.2
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 23 AVNQISFGVGRGECF-GLLGLNGAGKTTT 50
A+ + + GE F LLG G GKT T
Sbjct: 16 AIAGLVEALRDGERFVTLLGATGTGKTVT 44
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 26.1 bits (58), Expect = 1.3
Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 6/24 (25%)
Query: 46 GKTTTFKMLTGAIKPTSGNAYVMN 69
GKTT F LTG +V N
Sbjct: 15 GKTTIFNALTGL------RQHVGN 32
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary
complex, hydrolase/DNA complex; HET: ADP; 2.10A
{Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B
1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 26.0 bits (58), Expect = 1.4
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 23 AVNQISFGVGRGECF-GLLGLNGAGKTTT 50
A+ ++ G+ G+ LLG G GKT T
Sbjct: 20 AIEKLVKGIQEGKKHQTLLGATGTGKTFT 48
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 25.8 bits (57), Expect = 1.4
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 37 FGLLGLNGAGKTTTF 51
++G NG+GK++
Sbjct: 26 NLIIGQNGSGKSSLL 40
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 25.7 bits (57), Expect = 1.4
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 6/24 (25%)
Query: 46 GKTTTFKMLTGAIKPTSGNAYVMN 69
GKT+ F ++TG N V N
Sbjct: 15 GKTSLFNLITGH------NQRVGN 32
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 25.7 bits (57), Expect = 1.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 44 GAGKTTTFKMLTGAI 58
G+GKTT K L I
Sbjct: 185 GSGKTTLMKALMQEI 199
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small
GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga
maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 25.7 bits (57), Expect = 1.6
Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 6/24 (25%)
Query: 46 GKTTTFKMLTGAIKPTSGNAYVMN 69
GKT+ F LTG YV N
Sbjct: 17 GKTSLFNALTGT------KQYVAN 34
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 25.9 bits (57), Expect = 1.6
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 40 LGLNGAGKTTTFKMLTGAIKPT 61
G +GKTT K + +
Sbjct: 20 YGPGLSGKTTNLKWIYSKVPEG 41
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron
uptake, cell inner membrane, cell GTP-binding, ION
transport, membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 25.7 bits (57), Expect = 1.6
Identities = 11/25 (44%), Positives = 11/25 (44%), Gaps = 6/25 (24%)
Query: 45 AGKTTTFKMLTGAIKPTSGNAYVMN 69
GKTT F LT A N V N
Sbjct: 12 CGKTTLFNALTNA------NQRVGN 30
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 25.8 bits (56), Expect = 1.7
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69
+ G+ G GK+T + + N ++N
Sbjct: 6 VTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 25.6 bits (56), Expect = 1.7
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 41 GLNGAGKTTTFKMLTGAIKPTSGNAYVMN-HSIRDSMD 77
GL G GK+T K L + + + V+ IR+S
Sbjct: 11 GLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP 48
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION
transport, membrane; 1.80A {Escherichia coli} PDB:
3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 25.8 bits (57), Expect = 1.7
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 6/25 (24%)
Query: 45 AGKTTTFKMLTGAIKPTSGNAYVMN 69
+GKTT F LTG+ V N
Sbjct: 14 SGKTTLFNQLTGS------RQRVGN 32
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 25.4 bits (55), Expect = 1.8
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69
+ G+ G G TT+ ++ ++ N +++
Sbjct: 8 VTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 25.4 bits (56), Expect = 1.8
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 44 GAGKTTTFKMLTGAIKPT 61
G+GKTT K + I
Sbjct: 181 GSGKTTYIKSIMEFIPKE 198
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB:
2obm_A*
Length = 347
Score = 25.3 bits (56), Expect = 2.0
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 31 VGRGECFGLLGLNGAGKTTTFKMLT 55
G G+ G+ +G GK+T M+
Sbjct: 68 CGIGQRIGIFAGSGVGKSTLLGMIC 92
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 25.2 bits (54), Expect = 2.1
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 37 FGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+G GKTT K L A+ ++ H+ D
Sbjct: 9 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 25.6 bits (55), Expect = 2.3
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 39 LLGLNGAGKTTT 50
L G NGAGK+TT
Sbjct: 34 LSGGNGAGKSTT 45
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 25.1 bits (55), Expect = 2.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 44 GAGKTTTFKMLTGAIKPTS 62
+GKTTT + I P +
Sbjct: 270 ASGKTTTLNAIMMFIPPDA 288
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM
barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP:
c.1.7.1 PDB: 1a80_A* 1m9h_A*
Length = 278
Score = 24.8 bits (55), Expect = 3.0
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 12 HLETFPYDT--KPAVNQI 27
HLE T PAVNQI
Sbjct: 145 HLERIVAATGVVPAVNQI 162
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport,
transmembrane; HET: GDP; 2.20A {Methanocaldococcus
jannaschii}
Length = 188
Score = 24.8 bits (55), Expect = 3.3
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 46 GKTTTFKMLTGA 57
GK+T F LTG
Sbjct: 19 GKSTIFNALTGE 30
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC
transporter, nucleotide binding domain, NBD; HET: B44;
2.70A {Homo sapiens}
Length = 390
Score = 25.1 bits (55), Expect = 3.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
+ ISF + G+ GLLG G+GK+T
Sbjct: 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAF 67
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel,
aldo-ketoreductase, NADPH dependant, BACT targets at
IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP:
c.1.7.1
Length = 296
Score = 24.8 bits (55), Expect = 3.3
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 12 HLETFPYDT--KPAVNQI 27
HL+ +T P +NQI
Sbjct: 165 HLQRLIDETGVTPVINQI 182
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 24.7 bits (53), Expect = 3.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 39 LLGLNGAGKTTTFKML 54
L G G+GK+T + L
Sbjct: 14 LSGHPGSGKSTIAEAL 29
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins,
cell membrane, ION transport, transmembrane; HET: GNP;
1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A*
2wjh_A*
Length = 165
Score = 24.8 bits (55), Expect = 3.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 46 GKTTTFKMLTGA 57
GK+T F LTG
Sbjct: 15 GKSTIFNALTGE 26
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 24.6 bits (54), Expect = 3.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 31 VGRGECFGLLGLNGAGKTTTFKMLT 55
VGRG+ GL +G GK+ M+
Sbjct: 154 VGRGQRMGLFAGSGVGKSVLLGMMA 178
>2cy5_A Epidermal growth factor receptor pathway substrate 8-like protein
1; structural genomics, signal transduction,
phosphorylation, PTB domain, NPPSFA; 1.90A {Mus
musculus} SCOP: b.55.1.2 PDB: 2cy4_A
Length = 140
Score = 24.6 bits (53), Expect = 3.7
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
HL TF + V+ + + L ++ G+ +ML
Sbjct: 15 HLVTFCLGEEDGVHTVEDASRK-----LAVMDSQGRVWAQEML 52
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11,
replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus}
PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 24.6 bits (53), Expect = 3.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Query: 39 LLGLNGAGKTT 49
++G NG+GK++
Sbjct: 28 IIGQNGSGKSS 38
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 24.6 bits (54), Expect = 3.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 41 GLNGAGKTTTFKML 54
GL+ +GKTT +
Sbjct: 11 GLDKSGKTTQCMNI 24
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 24.5 bits (53), Expect = 3.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 39 LLGLNGAGKTTTFKML 54
+ G G GK+TT K L
Sbjct: 7 ITGPAGVGKSTTCKRL 22
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography;
1.80A {Brucella melitensis biovar}
Length = 283
Score = 24.4 bits (54), Expect = 3.9
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 2/18 (11%)
Query: 12 HLETFPYDT--KPAVNQI 27
LE ++ P +NQI
Sbjct: 168 DLERLIKESGVTPVLNQI 185
>1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics,
joint center for structural genomics, PSI, protein
structure initiative; HET: NAP; 2.40A {Thermotoga
maritima} SCOP: c.1.7.1
Length = 298
Score = 24.5 bits (54), Expect = 4.0
Identities = 7/18 (38%), Positives = 7/18 (38%), Gaps = 2/18 (11%)
Query: 12 HLETFPYDT--KPAVNQI 27
L PAVNQI
Sbjct: 158 RLMDLMVHHEIVPAVNQI 175
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium
smegmatis} PDB: 2wzt_A
Length = 283
Score = 24.4 bits (54), Expect = 4.1
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 12 HLETFPYDT--KPAVNQI 27
LET T PAVNQI
Sbjct: 153 DLETIVSLTYFTPAVNQI 170
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: NAP;
1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Length = 290
Score = 24.4 bits (54), Expect = 4.3
Identities = 6/18 (33%), Positives = 8/18 (44%), Gaps = 2/18 (11%)
Query: 12 HLETFPYDT--KPAVNQI 27
HL +P VNQ+
Sbjct: 154 HLTELFKSCKIRPMVNQV 171
>4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: CIT; 1.60A {Leishmania major}
Length = 288
Score = 24.4 bits (54), Expect = 4.3
Identities = 7/18 (38%), Positives = 8/18 (44%), Gaps = 2/18 (11%)
Query: 12 HLETFPYDT--KPAVNQI 27
HLE P VNQ+
Sbjct: 159 HLEDVLAMCTVTPMVNQV 176
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome
partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 24.4 bits (52), Expect = 4.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKP 60
L G NGAGK+TT A+ P
Sbjct: 32 LSGGNGAGKSTTMAAFVTALIP 53
>1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT;
2.10A {Trypanosoma brucei}
Length = 281
Score = 24.4 bits (54), Expect = 4.4
Identities = 7/18 (38%), Positives = 8/18 (44%), Gaps = 2/18 (11%)
Query: 12 HLETFPYDT--KPAVNQI 27
H+E P VNQI
Sbjct: 150 HIEELLKHCKVAPMVNQI 167
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A
{Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A*
1p73_A* 1p75_A*
Length = 334
Score = 24.7 bits (53), Expect = 4.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 44 GAGKTTTFKMLTGAIKPTSGNAYV 67
G GK+TT +++ A S Y
Sbjct: 17 GIGKSTTGRVMASAASGGSPTLYF 40
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus
subtilis} PDB: 3d3f_A*
Length = 276
Score = 24.4 bits (54), Expect = 4.5
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 12 HLETFPYDT--KPAVNQI 27
HLE D KP VNQ+
Sbjct: 147 HLEELLKDAEIKPMVNQV 164
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus
subtilis} PDB: 3b3d_A
Length = 310
Score = 24.5 bits (54), Expect = 4.6
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 12 HLETFPYDT--KPAVNQI 27
HLE D KP VNQ+
Sbjct: 181 HLEELLKDAEIKPMVNQV 198
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 24.4 bits (52), Expect = 4.8
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 44 GAGKTTTFKMLTGAIKPTSGNAYVM 68
G GKTT + T ++
Sbjct: 22 GIGKTTAAEEFLHHFAITPNRILLI 46
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 24.1 bits (53), Expect = 5.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 39 LLGLNGAGKT 48
+ G NGAGKT
Sbjct: 31 IYGENGAGKT 40
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC
protein structure initiative, midwest center for
structural genomics; 1.20A {Agrobacterium tumefaciens
str}
Length = 294
Score = 24.2 bits (53), Expect = 5.6
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 12 HLETFPYDTKPAVNQISFGVGRGECFG 38
+E + PAV + +
Sbjct: 238 VVELLKFPVTPAVKVLVSHTTGETIWS 264
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
1tmk_A*
Length = 216
Score = 24.1 bits (53), Expect = 5.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 41 GLNGAGKTTTFKML 54
GL+ GKTT +L
Sbjct: 12 GLDRTGKTTQCNIL 25
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A*
3mrs_A 3n2e_A*
Length = 168
Score = 24.1 bits (53), Expect = 6.1
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 39 LLGLNGAGKTTTFKML 54
L+G G+GK++ + L
Sbjct: 12 LIGFMGSGKSSLAQEL 27
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 24.1 bits (52), Expect = 6.3
Identities = 6/36 (16%), Positives = 9/36 (25%), Gaps = 3/36 (8%)
Query: 41 GLNGAGKTTTFKMLTGAIKPTSGNAYVM---NHSIR 73
L +G T N Y+ S+
Sbjct: 257 QLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVY 292
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 23.7 bits (52), Expect = 7.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 39 LLGLNGAGKTTTFKML 54
L+GL GAGKT+ L
Sbjct: 10 LIGLMGAGKTSVGSQL 25
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE;
1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 23.7 bits (52), Expect = 7.7
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 39 LLGLNGAGKTTTFKML 54
+G G+GK+T + L
Sbjct: 9 FIGFMGSGKSTLARAL 24
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 23.7 bits (52), Expect = 7.8
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 39 LLGLNGAGKTTTFKML 54
L G GAGKTT K
Sbjct: 30 LTGYMGAGKTTLGKAF 45
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold,
transferase-transferase complex; HET: ADX ANP; 1.79A
{Arabidopsis thaliana} PDB: 4fxp_A*
Length = 200
Score = 23.7 bits (52), Expect = 7.9
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 33 RGECFGLLGLNGAGKTT 49
+G + GL+G+GK+T
Sbjct: 24 KGCVIWVTGLSGSGKST 40
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 23.6 bits (52), Expect = 8.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 39 LLGLNGAGKTTTFKML 54
L+G +GK+T +L
Sbjct: 5 LIGFMCSGKSTVGSLL 20
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural
genomics, NPPSFA, national P protein structural and
functional analyses; 2.10A {Aeropyrum pernix}
Length = 186
Score = 23.7 bits (52), Expect = 8.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 33 RGECFGLLGLNGAGKTT 49
+G L GL G+GKTT
Sbjct: 12 KGIVVWLTGLPGSGKTT 28
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in
complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo
sapiens} PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 23.3 bits (51), Expect = 9.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 33 RGECFGLLGLNGAGKTT 49
RG L GL+GAGKTT
Sbjct: 4 RGCTVWLTGLSGAGKTT 20
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 23.3 bits (51), Expect = 9.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 39 LLGLNGAGKTTTFKML 54
L+G GAGK+T + L
Sbjct: 9 LVGPMGAGKSTIGRQL 24
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia
chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 23.3 bits (51), Expect = 9.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 39 LLGLNGAGKTTTFKML 54
++G G G TT + L
Sbjct: 7 MVGARGCGMTTVGREL 22
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.392
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,091,699
Number of extensions: 50402
Number of successful extensions: 379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 156
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)