RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7220
(80 letters)
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 73.5 bits (180), Expect = 2e-18
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
K + ISF + GE FGL+G NGAGKTTT ++++ IKP+SG V ++ +
Sbjct: 12 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPH 71
Query: 78 LVR 80
VR
Sbjct: 72 EVR 74
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 68.8 bits (168), Expect = 2e-16
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 76
+ A++ +S V +G+ ++G NG+GK+T ++TG +K G Y N I +
Sbjct: 14 FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE 72
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 65.7 bits (160), Expect = 1e-15
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 11 SHLE----TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
S LE + YD KP + +I+ + +G G NG GKTT K ++ +KP G
Sbjct: 1 SKLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 67 VMNHSIRD 74
I
Sbjct: 60 YNGVPITK 67
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 64.5 bits (157), Expect = 7e-15
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
Y + +S G+ ++G +G+GK+T + + KP+ G V +I D
Sbjct: 12 YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRD 71
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 63.4 bits (154), Expect = 1e-14
Identities = 20/63 (31%), Positives = 27/63 (42%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
Y A+ I V RG+ L+G NGAGKTTT + G ++ G I +
Sbjct: 16 YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA 75
Query: 78 LVR 80
V
Sbjct: 76 HVI 78
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 63.6 bits (154), Expect = 2e-14
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
F A++ ++ + GE FG+LG +GAGKTT +++ G P++G Y + +
Sbjct: 12 VFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLV 69
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 62.9 bits (153), Expect = 2e-14
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
+ AVN+++ + GE LLG +G GKTTT +M+ G +PT G Y +
Sbjct: 16 FGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDR 68
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 60.7 bits (147), Expect = 1e-13
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+ +S V GE L+G NGAGK+T + G + G+ +
Sbjct: 12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEA 64
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 60.7 bits (147), Expect = 1e-13
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 15 TFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
F Y D++ + ISF G +G GK+T F +L +PT+G + I
Sbjct: 8 DFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID 67
Query: 74 D 74
+
Sbjct: 68 N 68
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 60.3 bits (146), Expect = 2e-13
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+ I+ + GE +G +G GK+T +M+ G TSG+ ++ + D
Sbjct: 10 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND 66
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 59.9 bits (145), Expect = 3e-13
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+ AV ++S V GE LLG +G GKTTT +M+ G +P+ G Y+ + +
Sbjct: 13 FGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV 67
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 58.8 bits (142), Expect = 9e-13
Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 14 ETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG---------- 63
P + I+ + +GE + G G+GKT+ ++ G ++ + G
Sbjct: 42 SHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 101
Query: 64 ---NAYVMNHSIRDSMDL 78
+++M +I++++
Sbjct: 102 CSQFSWIMPGTIKENIIF 119
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 58.1 bits (140), Expect = 1e-12
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
+++ +S V GE F +LG GAGKT +++ G P SG + + D
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKH 72
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 57.5 bits (139), Expect = 3e-12
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+ + P + I+ + +GE +G++G GK+T ++ TSG + H+I+D
Sbjct: 25 QYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKD 84
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 57.2 bits (138), Expect = 3e-12
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
A+N +S V G+ +G++G +GAGK+T + + +PT G+ V +
Sbjct: 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT 71
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 54.8 bits (132), Expect = 2e-11
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
A+ ++ + GE ++G +G+GK+T ++ KPT G Y+ N D
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 54.5 bits (131), Expect = 3e-11
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
T+P PA+ I+ + G+ L+G +G+GK+T ++T G+ + H +R+
Sbjct: 22 TYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE 81
Query: 75 SM 76
Sbjct: 82 YT 83
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 53.0 bits (127), Expect = 9e-11
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+ D+ ++ I+ + +GE G++G +G+GK+T K++ P +G + H +
Sbjct: 10 RYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLAL 69
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 53.0 bits (127), Expect = 1e-10
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 15 TFPYDTKP---AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
+F Y +P + ++F + GE L+G NG+GK+T +L +PT G +
Sbjct: 18 SFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKP 77
Query: 72 IRD 74
+
Sbjct: 78 LPQ 80
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 52.7 bits (126), Expect = 1e-10
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+ F +G + LLG GAGK+ +++ G +KP G + I
Sbjct: 18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 42.3 bits (98), Expect = 6e-07
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 38 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
+ G G GKTT K + + + + ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKK 43
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 35.6 bits (81), Expect = 2e-04
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 38 GLLGLNGAGKTTTFKMLTGAIKPTSGN 64
G++G+ GK+T F+ +T ++ N
Sbjct: 14 GIVGMPNVGKSTFFRAITKSVLGNPAN 40
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 31.5 bits (71), Expect = 0.006
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 11/41 (26%)
Query: 38 GLLGLNGAGKTTTFKMLTGA-----------IKPTSGNAYV 67
G++GL GK+T F LT A I+P +G +
Sbjct: 6 GIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM 46
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 31.3 bits (69), Expect = 0.007
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 62
+ + G ++G NG+GK++ + +
Sbjct: 13 SHSDTVVEFKEGI-NLIIGQNGSGKSSLLDAILVGLYWPL 51
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 31.4 bits (70), Expect = 0.007
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 38 GLLGLNGAGKTTTFKMLTGAIKPTSGN 64
G++G GK+T F T N
Sbjct: 4 GVVGKPNVGKSTFFSAATLV-DVEIAN 29
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 30.5 bits (68), Expect = 0.012
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 39 LLGLNGAGKTTTFKML-TGAIKPTSG 63
LLG +GK+T K + + TSG
Sbjct: 11 LLGAGESGKSTIVKQMRILHVVLTSG 36
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 30.1 bits (66), Expect = 0.017
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
+G L G +GK + L + G + +
Sbjct: 5 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 44
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 29.6 bits (65), Expect = 0.027
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 38 GLLGLNGAGKTTTFKMLTGA 57
GL+G AGK++ +T A
Sbjct: 5 GLVGYPNAGKSSLLAAMTRA 24
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 29.5 bits (65), Expect = 0.027
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSG 63
LLG +GK+T K + + +G
Sbjct: 7 LLGAGESGKSTIVKQMKIIHEAGTG 31
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 29.2 bits (64), Expect = 0.030
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 39 LLGLNGAGKTTTFKMLTG----AIKPTSGNAYVMNH 70
+ G +GKT+ +LT + ++
Sbjct: 8 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY 43
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 29.2 bits (64), Expect = 0.033
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 39 LLGLNGAGKTTTFKML 54
+ G+ G G TT+ ++
Sbjct: 6 VTGVPGVGSTTSSQLA 21
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 29.1 bits (64), Expect = 0.037
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 38 GLLGLNGAGKTTTFKMLTGA 57
GL+G GK+T +++ A
Sbjct: 5 GLVGFPSVGKSTLLSVVSSA 24
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 29.2 bits (64), Expect = 0.040
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 39 LLGLNGAGKTTTFKML 54
+ G+ G GK+T +
Sbjct: 6 VTGIPGVGKSTVLAKV 21
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 28.8 bits (63), Expect = 0.044
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69
++GL GKT K LT + N
Sbjct: 7 MVGLPARGKTYISKKLTRYLNFIGVPTREFN 37
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 28.5 bits (63), Expect = 0.067
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 39 LLGLNGAGKTTT 50
++G+NG GKTTT
Sbjct: 14 MVGVNGVGKTTT 25
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 28.1 bits (61), Expect = 0.072
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 39 LLGLNGAGKTTTFKMLTG----AIKPTSGNAYVMNHSIRDSMDL 78
+LGL+ AGKTT K G I PT G +++
Sbjct: 7 MLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNI 50
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 28.2 bits (62), Expect = 0.083
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 39 LLGLNGAGKTTT 50
++G+NG GKTTT
Sbjct: 11 VVGVNGVGKTTT 22
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.9 bits (61), Expect = 0.084
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 39 LLGLNGAGKTTTFKMLTG--AIKPTSG 63
LLG +GK+T K + PT G
Sbjct: 7 LLGAGESGKSTFLKQMRIIHGQDPTKG 33
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 28.2 bits (62), Expect = 0.085
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 39 LLGLNGAGKTTT 50
L+G+ G GK TT
Sbjct: 17 LVGVQGTGKATT 28
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 28.1 bits (62), Expect = 0.087
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 39 LLGLNGAGKTTT 50
L+GL G+GKTTT
Sbjct: 15 LVGLQGSGKTTT 26
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 28.0 bits (61), Expect = 0.088
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
++GL+ AGKTT + + N +
Sbjct: 20 IVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 58
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 27.8 bits (61), Expect = 0.099
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 39 LLGLNGAGKTTT 50
++G+NG GKTT+
Sbjct: 16 VVGVNGTGKTTS 27
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.6 bits (60), Expect = 0.11
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 39 LLGLNGAGKTT---TFKMLTGAIKPTSG 63
LLG +GK+T +++ G+ PT+G
Sbjct: 7 LLGTGESGKSTFIKQMRIIHGSGVPTTG 34
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 27.8 bits (60), Expect = 0.12
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 39 LLGLNGAGKTTTFKML 54
L+G GAGK+T + L
Sbjct: 7 LVGPMGAGKSTIGRQL 22
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 27.6 bits (60), Expect = 0.12
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 39 LLGLNGAGKTTTFKML 54
L+GL G+GK+T + L
Sbjct: 6 LVGLPGSGKSTIGRRL 21
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 27.6 bits (60), Expect = 0.12
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 39 LLGLNGAGKTTTFKMLTGA 57
L G G+GKT+ +
Sbjct: 37 LGGQPGSGKTSLRSAIFEE 55
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 27.6 bits (60), Expect = 0.14
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 32 GRGECFGLLGLNGAGKTTTFKML 54
GRG+ + GL+ GKTT +L
Sbjct: 1 GRGKLILIEGLDRTGKTTQCNIL 23
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 27.4 bits (59), Expect = 0.15
Identities = 10/39 (25%), Positives = 11/39 (28%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
LGL+ AGKTT ML
Sbjct: 18 FLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG 56
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 27.4 bits (60), Expect = 0.17
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+C + G +GAGKT K + + S N I
Sbjct: 84 QENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISK 126
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 27.2 bits (59), Expect = 0.19
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 39 LLGLNGAGKTTTFKML 54
+G G+GK+T + L
Sbjct: 5 FIGFMGSGKSTLARAL 20
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor
Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 27.3 bits (60), Expect = 0.19
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68
+GRG+ ++ AGKT + + +I + +M
Sbjct: 40 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 77
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 26.8 bits (58), Expect = 0.21
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 39 LLGLNGAGKTTTFKML 54
++G G G TT + L
Sbjct: 7 MVGARGCGMTTVGREL 22
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.0 bits (58), Expect = 0.21
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 39 LLGLNGAGKTTTFKMLTGA----IKPTSGNAYVMNH 70
LGL+ AGKTT ML ++PT
Sbjct: 5 FLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELA 40
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 27.0 bits (58), Expect = 0.24
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 33 RGECFGLLGLNGAGKTTTFKML 54
RG L GL+GAGKTT L
Sbjct: 18 RGCTVWLTGLSGAGKTTVSMAL 39
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 26.6 bits (57), Expect = 0.26
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 38 GLLGLNGAGKTTTFKMLTGA 57
++G GK+T L G
Sbjct: 9 AIVGKPNVGKSTLLNNLLGV 28
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.9 bits (58), Expect = 0.26
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 39 LLGLNGAGKTTTFKMLTGA 57
+GL +GKT F L
Sbjct: 5 FVGLCDSGKTLLFVRLLTG 23
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 26.6 bits (57), Expect = 0.26
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
+LGL+GAGKTT L T+ N
Sbjct: 10 ILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV 41
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 26.5 bits (57), Expect = 0.29
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
++GL+ AGKTT L T+ N
Sbjct: 5 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 36
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 26.6 bits (57), Expect = 0.29
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 38 GLLGLNGAGKTTTFKMLTGA 57
G + GK+T LTG
Sbjct: 4 IFAGRSNVGKSTLIYRLTGK 23
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 26.5 bits (57), Expect = 0.30
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 39 LLGLNGAGKTTTFKML 54
+ G G GKT+ +M+
Sbjct: 10 ITGTPGTGKTSMAEMI 25
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 26.5 bits (57), Expect = 0.33
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 39 LLGLNGAGKTTTFKMLTG 56
LLGL+ AGKTT K L
Sbjct: 21 LLGLDNAGKTTLLKQLAS 38
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 26.6 bits (57), Expect = 0.33
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 39 LLGLNGAGKTTTFKMLTG 56
L+GL +GKTT ++
Sbjct: 7 LVGLQYSGKTTFVNVIAS 24
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 26.2 bits (56), Expect = 0.36
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 39 LLGLNGAGKTTTFKML 54
+G G+GK+T +
Sbjct: 7 TIGCPGSGKSTWAREF 22
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 26.3 bits (57), Expect = 0.38
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 32 GRGECFGLLGLNGAGKTTTFKML 54
R + + G +GAGKT + K
Sbjct: 92 ERNQSIIVSGESGAGKTVSAKYA 114
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 26.1 bits (56), Expect = 0.39
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 39 LLGLNGAGKTTTFKML 54
+ G G GK+TT K L
Sbjct: 7 ITGPAGVGKSTTCKRL 22
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 26.3 bits (57), Expect = 0.39
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 39 LLGLNGAGKTTTFKMLTG 56
++G G GK++T + G
Sbjct: 37 VMGKGGVGKSSTVNSIIG 54
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 26.2 bits (57), Expect = 0.40
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 32 GRGECFGLLGLNGAGKTTTFKML 54
+ + + G +GAGKT K +
Sbjct: 123 RQNQSLLITGESGAGKTENTKKV 145
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 26.2 bits (56), Expect = 0.45
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 38 GLLGLNGAGKTTTFKMLTGA 57
++G GK+T L G
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQ 28
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 25.8 bits (55), Expect = 0.49
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 37 FGLLGLNGAGKTTTFKML 54
+ L+G++G+GK+ +
Sbjct: 9 YVLMGVSGSGKSAVASEV 26
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 26.1 bits (56), Expect = 0.49
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 39 LLGLNGAGKTTTFKML 54
L G G GKTT K L
Sbjct: 9 LTGTPGVGKTTLGKEL 24
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 25.7 bits (55), Expect = 0.50
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 37 FGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
+G GKTT K L A+ ++ H
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 38
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 25.7 bits (55), Expect = 0.53
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 33 RGECFGLLGLNGAGKTTTFKML 54
G L G G+GK+T + L
Sbjct: 3 GGNILLLSGHPGSGKSTIAEAL 24
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 26.0 bits (55), Expect = 0.57
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 37 FGLLGLNGAGKTTTFKMLTGAI-KPTSGNAYVMNHSIRDSMD 77
++G NG+GK++ + + P + +
Sbjct: 26 NLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGAR 67
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 25.6 bits (55), Expect = 0.61
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 38 GLLGLNGAGKTTTFKML 54
L G G+GK+T
Sbjct: 7 ALTGGIGSGKSTVANAF 23
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 25.5 bits (54), Expect = 0.63
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 38 GLLGLNGAGKTTTFKMLTGA 57
+ G AGK++ L G
Sbjct: 5 VIAGRPNAGKSSLLNALAGR 24
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 25.5 bits (55), Expect = 0.67
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 38 GLLGLNGAGKTTTFKML 54
G G+GK+ T +
Sbjct: 31 FFSGPQGSGKSFTSIQI 47
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 25.5 bits (54), Expect = 0.71
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 37 FGLLGLNGAGKTTTFKMLTGA 57
++G GK+T F L
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKK 23
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 25.7 bits (55), Expect = 0.72
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 41 GLNGAGKTTTFKML 54
G++ AGK+T + L
Sbjct: 10 GVDRAGKSTQSRKL 23
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 25.3 bits (54), Expect = 0.74
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 39 LLGLNGAGKTTTFKMLTGA 57
++G GK+T L
Sbjct: 5 IVGKPNVGKSTLLNRLLNE 23
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 25.2 bits (54), Expect = 0.80
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
RG L GL+ +GK+T L + H+ R D +R
Sbjct: 23 RGLTIWLTGLSASGKSTLAVELEHQL-----VRDRRVHAYRLDGDNIR 65
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 25.4 bits (54), Expect = 0.82
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 38 GLLGLNGAGKTTTFKMLTGAIKP 60
L G G GKTT + +K
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKS 27
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 25.5 bits (55), Expect = 0.83
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 32 GRGECFGLLGLNGAGKTTTFKML 54
+ G +GAGKT K +
Sbjct: 89 REDQSILCTGESGAGKTENTKKV 111
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 25.4 bits (55), Expect = 0.85
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 32 GRGECFGLLGLNGAGKTTTFKML 54
+ + G +GAGKT K +
Sbjct: 119 RENQSCLITGESGAGKTENTKKV 141
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 25.3 bits (54), Expect = 0.87
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
+LGL+ AGKTT L T+ N
Sbjct: 17 MLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV 48
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus
influenzae [TaxId: 727]}
Length = 205
Score = 25.2 bits (54), Expect = 0.89
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 38 GLLGLNGAGKTTTFKML 54
GL G G+GKTT +
Sbjct: 6 GLTGGIGSGKTTIANLF 22
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 25.4 bits (54), Expect = 0.92
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 41 GLNGAGKTTTFKML 54
G++GAGK T + L
Sbjct: 7 GVDGAGKRTLVEKL 20
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 25.3 bits (54), Expect = 0.93
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
+LGL+GAGKTT L T+ N
Sbjct: 22 ILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLS 57
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 25.2 bits (53), Expect = 0.96
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69
LLG G GKT T + L K + +V
Sbjct: 48 LLGRPGTGKTVTLRKLWELYKDKTTARFVYI 78
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 25.1 bits (54), Expect = 0.98
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 32 GRGECFGLLGLNGAGKTTTFKML 54
+ + G +GAGKT K +
Sbjct: 121 RENQSILITGESGAGKTVNTKRV 143
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 24.9 bits (53), Expect = 0.99
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 38 GLLGLNGAGKTTTFKML 54
G+ G G+GK+T +L
Sbjct: 7 GITGNIGSGKSTVAALL 23
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 25.0 bits (53), Expect = 1.0
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 41 GLNGAGKTTTFKML 54
G AGK+T +L
Sbjct: 9 GNIAAGKSTFVNIL 22
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 25.0 bits (53), Expect = 1.0
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 39 LLGLNGAGKTTTFKML 54
L G + AGK+ + L
Sbjct: 8 LNGGSSAGKSGIVRCL 23
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 25.0 bits (53), Expect = 1.1
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 41 GLNGAGKTTTFKML 54
G GK+T K+L
Sbjct: 9 GNIAVGKSTFVKLL 22
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 25.0 bits (53), Expect = 1.1
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 38 GLLGLNGAGKTTTFKMLTGA 57
++G GK+T F +
Sbjct: 12 AIVGRPNVGKSTLFNAILNK 31
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 24.8 bits (53), Expect = 1.1
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 39 LLGLNGAGKTTTFKML 54
+G GAGK+T +
Sbjct: 19 AVGFPGAGKSTFIQEH 34
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia
coli [TaxId: 562]}
Length = 222
Score = 25.0 bits (53), Expect = 1.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
L G NGAGK+TT A+ P + N + +
Sbjct: 29 LSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATS 67
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 24.7 bits (52), Expect = 1.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 38 GLLGLNGAGKTTTFKML 54
G+ GL+ +GKTT L
Sbjct: 26 GIDGLSRSGKTTLANQL 42
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli
[TaxId: 562]}
Length = 210
Score = 24.9 bits (53), Expect = 1.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 41 GLNGAGKTTTFKML 54
GL GAGKTT ++
Sbjct: 9 GLEGAGKTTARNVV 22
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 24.4 bits (52), Expect = 1.5
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 37 FGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
+ ++G +GKTT + A + H
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEP 44
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 24.7 bits (54), Expect = 1.5
Identities = 13/51 (25%), Positives = 18/51 (35%)
Query: 9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59
V+ +E T V + +G GL G G GKT L +
Sbjct: 43 VEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA 93
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 24.5 bits (52), Expect = 1.5
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 38 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
G+ G +GK++ + + + I R
Sbjct: 6 GVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 48
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 24.2 bits (51), Expect = 1.9
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 34 GECFGLLGLNGAGKTTTFKML 54
G L G + GK+T + L
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCL 22
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 24.2 bits (51), Expect = 2.3
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 37 FGLLGLNGAGKTTTFKMLT 55
++G NG+GK+ +
Sbjct: 29 TAIVGANGSGKSNIGDAIL 47
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 24.0 bits (51), Expect = 2.4
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-AYVMNH 70
G G+ G GAGK+T + + A +
Sbjct: 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 91
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 23.8 bits (50), Expect = 2.6
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 41 GLNGAGKTTTFKML 54
G G+GKTT
Sbjct: 16 GNIGSGKTTYLNHF 29
>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Trypanosoma cruzi [TaxId: 5693]}
Length = 323
Score = 23.8 bits (51), Expect = 2.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 34 GECFGLLGLNGAGKTTT 50
G+ GL+G GKTT
Sbjct: 14 GDVTVFFGLSGTGKTTL 30
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 24.1 bits (51), Expect = 2.7
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 76
+ G G GK+T + L + S M
Sbjct: 33 VFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEM 70
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 23.7 bits (50), Expect = 2.7
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 38 GLLGLNGAGKTTTFKML 54
L G+ +GK TT +
Sbjct: 5 FLSGVKRSGKDTTADFI 21
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 23.9 bits (50), Expect = 2.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 37 FGLLGLNGAGKTTTFKMLTGA 57
G+ G GKTT K+LT
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEI 28
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 23.9 bits (50), Expect = 2.9
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 39 LLGLNGAGKTTTFKMLTG-----AIKPTSGNAYVMNH 70
+LG +G GKT+ K T G ++
Sbjct: 7 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE 43
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 23.9 bits (50), Expect = 3.1
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTT 49
K G G ++G NG+GK+
Sbjct: 12 KSYRGVTKVGFGESNFTSIIGPNGSGKSN 40
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 23.8 bits (50), Expect = 3.3
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTT 49
+N + G GE + +G GK+T
Sbjct: 23 TGINDKTLGARGGEVIMVTSGSGMGKST 50
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 23.7 bits (50), Expect = 3.3
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 39 LLGLNGAGKTTTFKMLTG-----AIKPTSGNAYVMNH 70
LG +G GKTT T T G +
Sbjct: 10 ALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKR 46
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 23.8 bits (51), Expect = 3.3
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 41 GLNGAGKTTTFKML 54
G+ G GK+TT +++
Sbjct: 13 GVYGIGKSTTGRVM 26
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of
F1 ATP synthase {Spinach (Spinacia oleracea),
chloroplast [TaxId: 3562]}
Length = 276
Score = 23.7 bits (51), Expect = 3.5
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTT 49
P T VGRG+ ++G GKT
Sbjct: 50 PLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTA 82
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 23.4 bits (50), Expect = 3.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 41 GLNGAGKTTTFKML 54
G +G GKTTT ++L
Sbjct: 11 GPHGMGKTTTTQLL 24
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 23.3 bits (49), Expect = 3.6
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 39 LLGLNGAGKTTTFKML 54
LLG GAGK T L
Sbjct: 5 LLGPPGAGKGTQAVKL 20
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 23.5 bits (49), Expect = 3.8
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 39 LLGLNGAGKTTTFKMLTG 56
++G + GKT
Sbjct: 7 VIGDSNVGKTCLTYRFCA 24
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 23.5 bits (49), Expect = 3.8
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 39 LLGLNGAGKTTTFKMLTG-----AIKPTSGNAYVMNH 70
+LG +G GKT+ K T G ++
Sbjct: 7 ILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKE 43
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 23.4 bits (50), Expect = 3.9
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 41 GLNGAGKTTTFKML 54
G G GKTT +
Sbjct: 12 GAYGIGKTTAAEEF 25
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 23.3 bits (49), Expect = 4.0
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 39 LLGLNGAGKTTTFKML 54
+ G +GK T +++
Sbjct: 8 ISGAPASGKGTQCELI 23
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 23.4 bits (49), Expect = 4.4
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 39 LLGLNGAGKTTTFKML 54
L+G GAGK T L
Sbjct: 7 LIGPPGAGKGTQAPNL 22
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 23.4 bits (50), Expect = 4.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 34 GECFGLLGLNGAGKTT 49
G+ GL+G GKTT
Sbjct: 14 GDVAVFFGLSGTGKTT 29
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 23.5 bits (49), Expect = 4.7
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 37 FGLLGLNGAGKTT 49
++G NG+GK+
Sbjct: 27 TAIVGPNGSGKSN 39
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 23.0 bits (48), Expect = 4.7
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 39 LLGLNGAGKTTTFKML 54
+LG GAGK T +
Sbjct: 6 VLGGPGAGKGTQCARI 21
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 23.1 bits (49), Expect = 5.1
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 2 LVTSLQTVDSHLETFPYDTKPAVNQIS 28
L ++ SHLET Y + + QI+
Sbjct: 16 LAQNI--SKSHLETCQY-LREELQQIT 39
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 23.2 bits (49), Expect = 5.3
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 38 GLLGLNGAGKTTTFKMLTG 56
+ G G+GK++ L G
Sbjct: 60 AVTGETGSGKSSFINTLRG 78
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 22.9 bits (48), Expect = 5.8
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 39 LLGLNGAGKTTTFKML 54
++G G+GK T +
Sbjct: 11 IMGAPGSGKGTVSSRI 26
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 23.0 bits (48), Expect = 5.9
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 39 LLGLNGAGKTTTFKMLTG 56
++G G GK+
Sbjct: 10 VIGNAGTGKSCLLHQFIE 27
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 22.9 bits (48), Expect = 5.9
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 39 LLGLNGAGKTTTFKMLTG-----AIKPTSGNAY 66
L+G +G GK+ + T G +
Sbjct: 11 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF 43
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 23.0 bits (48), Expect = 6.1
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 39 LLGLNGAGKTTTFKML 54
LLG AGK T + +
Sbjct: 5 LLGAPVAGKGTQAQFI 20
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 22.8 bits (48), Expect = 6.2
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 39 LLGLNGAGKTTTFKMLTG 56
L+G +G GK+
Sbjct: 7 LIGDSGVGKSCLLVRFVE 24
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 23.0 bits (48), Expect = 6.3
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 39 LLGLNGAGKTTTFKML 54
+ G G GK+ + L
Sbjct: 55 VNGATGTGKSVLLREL 70
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of
F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 22.8 bits (49), Expect = 6.5
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 31 VGRGECFGLLGLNGAGKTT 49
+GRG+ ++G GKT+
Sbjct: 65 IGRGQRELIIGDRQTGKTS 83
>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Escherichia coli [TaxId: 562]}
Length = 313
Score = 22.7 bits (48), Expect = 6.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 34 GECFGLLGLNGAGKTT 49
G+ GL+G GKTT
Sbjct: 14 GDVAVFFGLSGTGKTT 29
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 22.6 bits (47), Expect = 6.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 39 LLGLNGAGKTTTFKML 54
L+GL GAGK T + +
Sbjct: 5 LMGLPGAGKGTQAEKI 20
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 236
Score = 22.7 bits (48), Expect = 7.6
Identities = 6/27 (22%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 2 LVTSLQTVDSHLETFPYDTKPAVNQIS 28
L+++L V +H+++ P T ++
Sbjct: 2 LISAL--VRAHVDSNPAMTSLDYSRFQ 26
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 22.7 bits (48), Expect = 8.0
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 4/27 (14%)
Query: 37 FGLLGLNGAGKTTTFKMLTGAIKPTSG 63
G+ AGKTT T I +G
Sbjct: 9 IGIAAHIDAGKTT----TTERILYYTG 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.392
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 257,651
Number of extensions: 8949
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 140
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)