BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7223
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NXC|A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals
The Molecular Basis For Substrate Specificity Among
Class I Enzymes (Family 47 Glycosidases)
Length = 478
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 75/171 (43%), Gaps = 26/171 (15%)
Query: 1 MDHLGCFSGGMFGLAAHTRPNSELFNKYMDVAKGITNTCHEAYIQTATHIG---FK---- 53
M HL CF+GGMF L A P + Y+++ I TCHE+Y +T +G F+
Sbjct: 296 MGHLTCFAGGMFALGADGAPEARA-QHYLELGAEIARTCHESYNRTYVKLGPEAFRFDGG 354
Query: 54 ----VSSSPLRLVFLRAASLPCQQNFRRNT--------------ALEKHCRTEYGYTGIK 95
+ + LR + R T ALE HCR GY+G++
Sbjct: 355 VEAIATRQNEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEAVEALESHCRVNGGYSGLR 414
Query: 96 NVYQENPQQDDVQQSFFLAETXXXXXXXXXXXXXXXXXQWVFNSEGHPLPV 146
+VY DDVQQSFFLAET W+FN+E HP P+
Sbjct: 415 DVYIARESYDDVQQSFFLAETLKYLYLIFSDDDLLPLEHWIFNTEAHPFPI 465
>pdb|1G6I|A Chain A, Crystal Structure Of The Yeast Alpha-1,2-Mannosidase With
Bound 1- Deoxymannojirimycin At 1.59 A Resolution
Length = 545
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 1 MDHLGCFSGGMF------GLAAHTRPNSELFNKY-MDVAKGITNTCHEAYIQTATHIG 51
MDHL CF GG+ GL+ H F+K D+AKGIT+TC++ Y Q+++ +
Sbjct: 336 MDHLVCFMGGLLASGSTEGLSIHEARRRPFFSKSDWDLAKGITDTCYQMYKQSSSGLA 393
>pdb|1DL2|A Chain A, Crystal Structure Of Class I Alpha-1,2-Mannosidase From
Saccharomyces Cerevisiae At 1.54 Angstrom Resolution
Length = 511
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 1 MDHLGCFSGGMF------GLAAHTRPNSELFNKY-MDVAKGITNTCHEAYIQTAT 48
MDHL CF GG+ GL+ H F+K D+AKGIT+TC++ Y Q+++
Sbjct: 302 MDHLVCFMGGLLASGSTEGLSIHEARRRPFFSKSDWDLAKGITDTCYQMYKQSSS 356
>pdb|1FMI|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase
Length = 458
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 66/179 (36%), Gaps = 38/179 (21%)
Query: 1 MDHLGCFSGGMFGLAA-HTRPNSELFNKYMDVAKGITNTCHEAYIQTATHIG-----FKV 54
MDHL CF G L H P S +M++A+ + TC++ Q T + F +
Sbjct: 283 MDHLVCFLPGTLALGVYHGLPAS-----HMELAQELMETCYQMNRQMETGLSPEIVHFNL 337
Query: 55 SSSPLRLV----------FLRAASLPCQQNFRRNTALEKHCRTEY--------------- 89
P R LR ++ R T K+ +
Sbjct: 338 YPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSG 397
Query: 90 GYTGIKNVYQ-ENPQQDDVQQSFFLAETXXXXXXXXXXXXXXXXXQ-WVFNSEGHPLPV 146
GY+ I NV + P+ D +SFFL ET +VFN+E HPLP+
Sbjct: 398 GYSSINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLSLDAYVFNTEAHPLPI 456
>pdb|1FO2|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With 1-Deoxymannojirimycin
pdb|1FO3|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With Kifunensine
Length = 460
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 66/179 (36%), Gaps = 38/179 (21%)
Query: 1 MDHLGCFSGGMFGLAA-HTRPNSELFNKYMDVAKGITNTCHEAYIQTATHIG-----FKV 54
MDHL CF G L H P S +M++A+ + TC++ Q T + F +
Sbjct: 283 MDHLVCFLPGTLALGVYHGLPAS-----HMELAQELMETCYQMNRQMETGLSPEIVHFNL 337
Query: 55 SSSPLRLV----------FLRAASLPCQQNFRRNTALEKHCRTEY--------------- 89
P R LR ++ R T K+ +
Sbjct: 338 YPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSG 397
Query: 90 GYTGIKNVYQ-ENPQQDDVQQSFFLAETXXXXXXXXXXXXXXXXXQ-WVFNSEGHPLPV 146
GY+ I NV + P+ D +SFFL ET +VFN+E HPLP+
Sbjct: 398 GYSSINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLSLDAYVFNTEAHPLPI 456
>pdb|1X9D|A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase
In Complex With Thio-Disaccharide Substrate Analogue
Length = 538
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 66/179 (36%), Gaps = 38/179 (21%)
Query: 1 MDHLGCFSGGMFGLAA-HTRPNSELFNKYMDVAKGITNTCHEAYIQTATHIG-----FKV 54
MDHL CF G L H P S +M++A+ + TC++ Q T + F +
Sbjct: 361 MDHLVCFLPGTLALGVYHGLPAS-----HMELAQELMETCYQMNRQMETGLSPEIVHFNL 415
Query: 55 SSSPLRLV----------FLRAASLPCQQNFRRNTALEKHCRTEY--------------- 89
P R LR ++ R T K+ +
Sbjct: 416 YPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSG 475
Query: 90 GYTGIKNVYQ-ENPQQDDVQQSFFLAETXXXXXXXXXXXXXXXXXQ-WVFNSEGHPLPV 146
GY+ I NV + P+ D +SFFL ET +VFN+E HPLP+
Sbjct: 476 GYSSINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLSLDAYVFNTEAHPLPI 534
>pdb|2RI8|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI8|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI9|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
pdb|2RI9|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
Length = 475
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 64/184 (34%), Gaps = 44/184 (23%)
Query: 3 HLGCFSGGMFGLAAHTRPNSELFNKYMDVAKGITNTCHEAYIQTATHI------------ 50
HL CF GG F L + ++D + + C Y T T I
Sbjct: 294 HLTCFDGGSFLLGGTVLDRQD----FIDFGLELVDGCEATYNSTLTKIGPDSWGWDPKKV 349
Query: 51 -----------GFKVSSSPLRL------VFLRAASLPCQQNFRRN-----TALEKHCRTE 88
GF +SS L F A + ++ +R A+ CRT+
Sbjct: 350 PSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFVAINSTCRTD 409
Query: 89 YGYTGIKNVYQEN-PQQDDVQQSFFLAETXXXXXXXXXXXXXXXXXQ-----WVFNSEGH 142
G+ + +V + N + D Q+SF AE + +V+N+E H
Sbjct: 410 SGFAAVSDVNKANGGSKYDNQESFLFAEVMKYSYLAHSEDAAWQVQKGGKNTFVYNTEAH 469
Query: 143 PLPV 146
P+ V
Sbjct: 470 PISV 473
>pdb|1KKT|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KKT|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|A Chain A, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|B Chain B, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
Length = 511
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 64/184 (34%), Gaps = 44/184 (23%)
Query: 3 HLGCFSGGMFGLAAHTRPNSELFNKYMDVAKGITNTCHEAYIQTATHI------------ 50
HL CF GG F L + ++D + + C Y T T I
Sbjct: 329 HLTCFDGGSFLLGGTVLDRQD----FIDFGLELVDGCEATYNSTLTKIGPDSWGWDPKKV 384
Query: 51 -----------GFKVSSSPLRL------VFLRAASLPCQQNFRRN-----TALEKHCRTE 88
GF +SS L F A + ++ +R A+ CRT+
Sbjct: 385 PSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFVAINSTCRTD 444
Query: 89 YGYTGIKNVYQEN-PQQDDVQQSFFLAETXXXXXXXXXXXXXXXXXQ-----WVFNSEGH 142
G+ + +V + N + D Q+SF AE + +V+N+E H
Sbjct: 445 SGFAAVSDVNKANGGSKYDNQESFLFAEVMKYSYLAHSEDAAWQVQKGGKNTFVYNTEAH 504
Query: 143 PLPV 146
P+ V
Sbjct: 505 PISV 508
>pdb|1HCU|A Chain A, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|B Chain B, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|C Chain C, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|D Chain D, Alpha-1,2-Mannosidase From Trichoderma Reesei
Length = 503
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 79 TALEKHCRTEYGYTGIKNVYQEN-PQQDDVQQSFFLAETXXX-----XXXXXXXXXXXXX 132
+A+E CR Y+ I +V Q N D +SF+ AE
Sbjct: 419 SAIEDACRAGSAYSSINDVTQANGGGASDDMESFWFAEALKYAYLIFAEESDVQVQATGG 478
Query: 133 XQWVFNSEGHPLPVK 147
++VFN+E HP ++
Sbjct: 479 NKFVFNTEAHPFSIR 493
>pdb|3A64|A Chain A, Crystal Structure Of Cccel6c, A Glycoside Hydrolase Family
6 Enzyme, From Coprinopsis Cinerea
pdb|3A9B|A Chain A, Cccel6c, A Glycoside Hydrolase Family 6 Enzyme, Complexed
With Cellobiose
pdb|3ABX|A Chain A, Cccel6c, A Glycoside Hydrolase Family 6 Enzyme, Complexed
With P-Nitrophenyl Beta-D-Cellotrioside
Length = 395
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 3 HLGCFSGGMFGLAAHTRPNSELFNKYMDVAKGIT 36
++ GG G + RP++E+F + +D+A+ IT
Sbjct: 190 YIDAAHGGWLGWNDNLRPSAEIFKETLDLARQIT 223
>pdb|3VOF|A Chain A, Cellobiohydrolase Mutant, Cccel6c D102a, In The Closed
Form
Length = 395
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 3 HLGCFSGGMFGLAAHTRPNSELFNKYMDVAKGIT 36
++ GG G + RP++E+F + +D+A+ IT
Sbjct: 190 YIDAAHGGWLGWNDNLRPSAEIFKETLDLARQIT 223
>pdb|3IBS|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Batb
From Bacteroides Thetaiotaomicron
pdb|3IBS|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Batb
From Bacteroides Thetaiotaomicron
Length = 218
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 140 EGHPLPVKGKNDFYREASSDV 160
EG P+PV+G ND+ R+ +V
Sbjct: 151 EGAPIPVEGTNDYRRDREGNV 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,499,632
Number of Sequences: 62578
Number of extensions: 138876
Number of successful extensions: 234
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 19
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)