RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7223
(166 letters)
>gnl|CDD|216556 pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 47. Members
of this family are alpha-mannosidases that catalyze the
hydrolysis of the terminal 1,2-linked alpha-D-mannose
residues in the oligo-mannose oligosaccharide
Man(9)(GlcNAc)(2).
Length = 445
Score = 173 bits (440), Expect = 8e-53
Identities = 65/177 (36%), Positives = 88/177 (49%), Gaps = 34/177 (19%)
Query: 1 MDHLGCFSGGMFGLAAHTRPNSELFNKYMDVAKGITNTCHEAYIQTATHIG-----FKVS 55
MDHL CF+GG+ L A + +++A+ +T+TC++ Y T T +G F
Sbjct: 272 MDHLVCFAGGLLALGAKLGLPDK---GDLELAEELTDTCYKMYKSTPTGLGPEIFYFNPC 328
Query: 56 SSPLRLVFLRAASLPCQQN-FR-----------RNT--------------ALEKHCRTEY 89
+ + R R T A+EK+ RT
Sbjct: 329 PCWDEDKWDFYVKIADSHYLLRPETIESLFYLYRLTGDPKYREWGWEIFQAIEKYTRTPC 388
Query: 90 GYTGIKNVYQENPQQDDVQQSFFLAETLKYLYLLFSDDSLLPLDQWVFNSEGHPLPV 146
GY GIK+V P+ D +SF+LAETLKYLYLLFSDD LL LD+WVFN+E HPLP+
Sbjct: 389 GYAGIKDVTTPPPEPRDRMESFWLAETLKYLYLLFSDDDLLSLDEWVFNTEAHPLPI 445
>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein;
Provisional.
Length = 522
Score = 172 bits (438), Expect = 5e-52
Identities = 75/177 (42%), Positives = 104/177 (58%), Gaps = 27/177 (15%)
Query: 1 MDHLGCFSGGMFGLAAH--TRPNSELFNKYMDVAKGITNTCHEAYIQTATHIG-----F- 52
M+HL CF+GGMF L A P+ E +YM+V + +T TC+E Y + T +G F
Sbjct: 346 MEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTCYETYATSPTGLGPEIFHFD 405
Query: 53 ----KVSSSP------LR-------LVFLRAASLPCQQNFRRN--TALEKHCRTEYGYTG 93
+S + LR + R P + + A+EKHC+TE GY+G
Sbjct: 406 PNSGDISPNVHDSHYILRPETVESIFILYRLTGDPKYREWAWKIFQAIEKHCKTENGYSG 465
Query: 94 IKNVYQENPQQDDVQQSFFLAETLKYLYLLFSDDSLLPLDQWVFNSEGHPLPVKGKN 150
+KNV +PQQDD Q+SFFLAETLKYLYLLF D ++PLD++VFN+E HP+P++ N
Sbjct: 466 LKNVLTVHPQQDDFQESFFLAETLKYLYLLFQPDHVIPLDKYVFNTEAHPIPIQKTN 522
>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional.
Length = 314
Score = 28.2 bits (63), Expect = 2.2
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 59 LRLVFLRAASLPCQQNFRRNTALEKHCRTEYGYTGIKNVYQENPQQDDVQQS--FFLAET 116
+++VFL + ++P N R + H EY +T + + D V S F ET
Sbjct: 2 MKIVFLDSTAIPKHINIPRPSF--PHEWIEYDHTSAEQTIERAKDADIVITSKVLFTRET 59
Query: 117 LKYL 120
L L
Sbjct: 60 LAQL 63
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys.
The C2H2 zinc finger is composed of two short beta
strands followed by an alpha helix. The amino terminal
part of the helix binds the major groove in DNA binding
zinc fingers. The accepted consensus binding sequence
for Sp1 is usually defined by the asymmetric
hexanucleotide core GGGCGG but this sequence does not
include, among others, the GAG (=CTC) repeat that
constitutes a high-affinity site for Sp1 binding to the
wt1 promoter.
Length = 22
Score = 24.6 bits (54), Expect = 4.2
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 71 CQQNFRRNTALEKHCRT 87
C ++F R + L++H RT
Sbjct: 5 CGKSFSRKSNLKRHLRT 21
>gnl|CDD|132329 TIGR03286, methan_mark_15, putative methanogenesis marker protein
15. Members of this protein family, to date, are found
in a completed prokaryotic genome if and only if the
species is one of the archaeal methanogens. The exact
function is unknown, but likely is linked to
methanogenesis or a process closely connected to it.
Related proteins include the BadF/BadG/BcrA/BcrD ATPase
family (pfam01869), which includes an activator for
(R)-2-hydroxyglutaryl-CoA dehydratase [Energy
metabolism, Methanogenesis].
Length = 404
Score = 27.1 bits (60), Expect = 5.3
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 42 AYIQTA-THIGFKVSSSPLRLVFLRAASL 69
YI A G V S L+L+ RA +L
Sbjct: 38 DYIDEACRDFGLTVKSGDLKLMIARAMAL 66
>gnl|CDD|226287 COG3764, SrtA, Sortase (surface protein transpeptidase) [Cell
envelope biogenesis, outer membrane].
Length = 210
Score = 25.8 bits (57), Expect = 9.7
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 8 SGGMFGLAAH-TRPNSELFNKYMDVAKG 34
G + LA H LF + G
Sbjct: 111 ENGNYVLAGHRGTRYGSLFRPLGKLKVG 138
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.414
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,299,569
Number of extensions: 712495
Number of successful extensions: 453
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 12
Length of query: 166
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 76
Effective length of database: 6,945,742
Effective search space: 527876392
Effective search space used: 527876392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)