RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7223
(166 letters)
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase,
structural genomics, PSI, protein initiative; HET: NAG
BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Length = 478
Score = 171 bits (435), Expect = 5e-52
Identities = 69/181 (38%), Positives = 91/181 (50%), Gaps = 26/181 (14%)
Query: 1 MDHLGCFSGGMFGLAAHTRPNSELFNKYMDVAKGITNTCHEAYIQTATHIGF-------- 52
M HL CF+GGMF L A P + Y+++ I TCHE+Y +T +G
Sbjct: 296 MGHLTCFAGGMFALGADGAPEARA-QHYLELGAEIARTCHESYNRTYVKLGPEAFRFDGG 354
Query: 53 --------KVSSSPLR-------LVFLRAASLPCQQNFRRN--TALEKHCRTEYGYTGIK 95
LR + R P + + ALE HCR GY+G++
Sbjct: 355 VEAIATRQNEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEAVEALESHCRVNGGYSGLR 414
Query: 96 NVYQENPQQDDVQQSFFLAETLKYLYLLFSDDSLLPLDQWVFNSEGHPLPVKGKNDFYRE 155
+VY DDVQQSFFLAETLKYLYL+FSDD LLPL+ W+FN+E HP P+ + +
Sbjct: 415 DVYIARESYDDVQQSFFLAETLKYLYLIFSDDDLLPLEHWIFNTEAHPFPILREQKKEID 474
Query: 156 A 156
Sbjct: 475 G 475
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG;
2.37A {Trichoderma reesei} SCOP: a.102.2.1
Length = 503
Score = 144 bits (364), Expect = 1e-41
Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 50/196 (25%)
Query: 1 MDHLGCFSGGMFGLAAHTRPNSELFNKYMDVAKGITNTCHEAYIQTATHIG--------- 51
HL F GG F L KY+D + ++ Y QTA+ IG
Sbjct: 305 SGHLASFGGGNFILGGILLNE----QKYIDFGIKLASSYFGTYTQTASGIGPEGFAWVDS 360
Query: 52 --------------------FKVSSS--PLR-------LVFLRAASLPCQQNFRRN--TA 80
F V++ LR R Q+ +A
Sbjct: 361 VTGAGGSPPSSQSGFYSSAGFWVTAPYYILRPETLESLYYAYRVTGDSKWQDLAWEALSA 420
Query: 81 LEKHCRTEYGYTGIKNVYQ-ENPQQDDVQQSFFLAETLKYLYLLFSDDSLLPL-----DQ 134
+E CR Y+ I +V Q D +SF+ AE LKY YL+F+++S + + ++
Sbjct: 421 IEDACRAGSAYSSINDVTQANGGGASDDMESFWFAEALKYAYLIFAEESDVQVQATGGNK 480
Query: 135 WVFNSEGHPLPVKGKN 150
+VFN+E HP ++ +
Sbjct: 481 FVFNTEAHPFSIRSSS 496
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative
conformations, modulation of activity, glycoprot
glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A
{Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A*
1kkt_A* 1kre_A* 1krf_A*
Length = 475
Score = 141 bits (356), Expect = 1e-40
Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 44/186 (23%)
Query: 1 MDHLGCFSGGMFGLAAHTRPNSELFNKYMDVAKGITNTCHEAYIQTATHIG--------- 51
HL CF GG F L + ++D + + C Y T T IG
Sbjct: 292 SQHLTCFDGGSFLLGGTVLDRQD----FIDFGLELVDGCEATYNSTLTKIGPDSWGWDPK 347
Query: 52 --------------FKVSSS--PLR-------LVFLRAASLPCQQNFRRN--TALEKHCR 86
F +SS LR R +++ N A+ CR
Sbjct: 348 KVPSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFVAINSTCR 407
Query: 87 TEYGYTGIKNVYQ-ENPQQDDVQQSFFLAETLKYLYLLFSDDSLLPLDQ-----WVFNSE 140
T+ G+ + +V + + D Q+SF AE +KY YL S+D+ + + +V+N+E
Sbjct: 408 TDSGFAAVSDVNKANGGSKYDNQESFLFAEVMKYSYLAHSEDAAWQVQKGGKNTFVYNTE 467
Query: 141 GHPLPV 146
HP+ V
Sbjct: 468 AHPISV 473
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase;
HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae}
SCOP: a.102.2.1 PDB: 1g6i_A*
Length = 511
Score = 136 bits (344), Expect = 1e-38
Identities = 45/204 (22%), Positives = 79/204 (38%), Gaps = 51/204 (25%)
Query: 1 MDHLGCFSGGMFGLAAHTRPNSE-------LFNKYMDVAKGITNTCHEAYIQTATHIG-- 51
MDHL CF GG+ + + D+AKGIT+TC++ Y Q+++ +
Sbjct: 302 MDHLVCFMGGLLASGSTEGLSIHEARRRPFFSKSDWDLAKGITDTCYQMYKQSSSGLAPE 361
Query: 52 -FKVSSSPLRLVFLRAASLP--------CQQNFRRNT----------------------- 79
+ ++ +S+ R T
Sbjct: 362 IVVFNDGNIKQDGWWRSSVGDFFVKPLDRHNLQRPETVESIMFMYHLSHDHKYREWGAEI 421
Query: 80 --ALEKHCRTEYG------YTGIKNVYQENPQQDDVQQSFFLAETLKYLYLLFSDDSLLP 131
+ ++ + +T + + ++ + +SF+LAETLKYLY+LF D+
Sbjct: 422 ATSFFENTCVDCNDPKLRRFTSLSDCITLPTKKSNNMESFWLAETLKYLYILFLDE--FD 479
Query: 132 LDQWVFNSEGHPLPVKGKNDFYRE 155
L + VFN+E HP PV + +
Sbjct: 480 LTKVVFNTEAHPFPVLDEEILKSQ 503
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1,
2-alpha-mannosidase; substrate analogue, glycosyl
hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP:
a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Length = 538
Score = 130 bits (328), Expect = 3e-36
Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 36/178 (20%)
Query: 1 MDHLGCFSGGMFGLAAHTRPNSELFNKYMDVAKGITNTCHEAYIQTATHIG---FKVSSS 57
MDHL CF G L + + +M++A+ + TC++ Q T + +
Sbjct: 361 MDHLVCFLPGTLALGVYHGLPAS----HMELAQELMETCYQMNRQMETGLSPEIVHFNLY 416
Query: 58 PLRLVFLRAASLPCQQNFRRN--------------------------TALEKHCRTEY-G 90
P + N R + + R G
Sbjct: 417 PQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGG 476
Query: 91 YTGIKNVYQ-ENPQQDDVQQSFFLAETLKYLYLLFSDD-SLLPLDQWVFNSEGHPLPV 146
Y+ I NV + P+ D +SFFL ETLKYL+LLFSDD +LL LD +VFN+E HPLP+
Sbjct: 477 YSSINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLSLDAYVFNTEAHPLPI 534
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.33
Identities = 29/171 (16%), Positives = 56/171 (32%), Gaps = 61/171 (35%)
Query: 14 LAAHTRPNSELFNKYMDVAKGITNTCH---EAYIQTATHIGFKVSSSPL--------RLV 62
L T ++F + +++ + + N + + Y+ + + S PL +V
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP-----I-SCPLIGVIQLAHYVV 251
Query: 63 FLRAASL-PCQQNFRRNTALEKHCRTEYGYTGIKNVYQENPQQD----------DVQQSF 111
+ P R G TG Q D +SF
Sbjct: 252 TAKLLGFTP--GELRSYLK---------GATGHS--------QGLVTAVAIAETDSWESF 292
Query: 112 F--LAETLKYLYLL-------FSDDSLLP--LDQWVFNSEGHPLP---VKG 148
F + + + L+ + + + SL P L+ + N+EG P P +
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Score = 26.2 bits (57), Expect = 8.0
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 29/90 (32%)
Query: 59 LRLVFLRAASLPCQQNFRRNTALEK--HCRTEYGYTGIKNVYQENPQQDDVQQSFFLAET 116
+ +VF R ++ A+ + R+ YG I NP + F E
Sbjct: 1783 VEVVFYRGMTM--------QVAVPRDELGRSNYGMIAI------NPGRVAA---SFSQEA 1825
Query: 117 LKYLYLLFSDDSLLPLDQWV-----FNSEG 141
L+Y+ + W+ +N E
Sbjct: 1826 LQYVVERVGKRT-----GWLVEIVNYNVEN 1850
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative
splicing, cell membrane, coiled coil, cytoplasm,
cytoskeleton, endocytosis; NMR {Homo sapiens}
Length = 98
Score = 28.0 bits (62), Expect = 0.71
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 67 ASLPCQQNFRR--------NTALEKHCRTEYGYTGIKNVYQENPQ---QDDVQQSFFLAE 115
+ LP +Q +R + L+K +K+VY++ PQ ++ +AE
Sbjct: 9 SHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQ--IAE 66
Query: 116 TLKYLYLLFSDDSLLPLDQWVFNSEGHPLPVKG 148
TL + L + + W+ +E L +G
Sbjct: 67 TLSNIERL--KLEVQKYEAWLAEAESRVLSNRG 97
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.94
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 8/29 (27%)
Query: 103 QQDDVQQSFFLAETLKYLYLLFSDDSLLP 131
++ +++ L +LK L++DDS P
Sbjct: 18 EKQALKK---LQASLK----LYADDS-AP 38
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 26.5 bits (58), Expect = 1.5
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 11/54 (20%)
Query: 37 NTCHEAYIQTATHIGFKVSSSPLRLVFLRAASLPCQQNFRRNTALEKHCRTEYG 90
+ C +I+ +T K C+++ + AL K E G
Sbjct: 22 SKCGIIFIRRSTLSRRKTPMCE-----------KCRKDSCQEAALNKDEGNESG 64
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 2.9
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 73 QNFRRNTALEKHCRTEYGYTGIKNVYQENPQQDDVQQSF--FLAETLKYLYLLFSDD-SL 129
+ + +EK E + I ++Y E + + + + + + SDD
Sbjct: 409 NKLHKYSLVEKQ-PKESTIS-IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 130 LPLDQWVFNSEGH 142
LDQ+ ++ GH
Sbjct: 467 PYLDQYFYSHIGH 479
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.414
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,444,167
Number of extensions: 127122
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 17
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)