RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7223
(166 letters)
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 467
Score = 155 bits (393), Expect = 2e-46
Identities = 69/171 (40%), Positives = 90/171 (52%), Gaps = 26/171 (15%)
Query: 1 MDHLGCFSGGMFGLAAHTRPNSELFNKYMDVAKGITNTCHEAYIQTATHIGFKV------ 54
M HL CF+GGMF L A P + Y+++ I TCHE+Y +T +G +
Sbjct: 296 MGHLTCFAGGMFALGADGAPEAR-AQHYLELGAEIARTCHESYNRTYVKLGPEAFRFDGG 354
Query: 55 ----------SSSPLR-------LVFLRAASLPCQQNFRRN--TALEKHCRTEYGYTGIK 95
LR + R P + + ALE HCR GY+G++
Sbjct: 355 VEAIATRQNEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEAVEALESHCRVNGGYSGLR 414
Query: 96 NVYQENPQQDDVQQSFFLAETLKYLYLLFSDDSLLPLDQWVFNSEGHPLPV 146
+VY DDVQQSFFLAETLKYLYL+FSDD LLPL+ W+FN+E HP P+
Sbjct: 415 DVYIARESYDDVQQSFFLAETLKYLYLIFSDDDLLPLEHWIFNTEAHPFPI 465
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Trichoderma reesei [TaxId: 51453]}
Length = 488
Score = 137 bits (347), Expect = 1e-39
Identities = 49/193 (25%), Positives = 75/193 (38%), Gaps = 50/193 (25%)
Query: 1 MDHLGCFSGGMFGLAAHTRPNSELFNKYMDVAKGITNTCHEAYIQTATHIG--------- 51
HL F GG F L KY+D + ++ Y QTA+ IG
Sbjct: 299 SGHLASFGGGNFILGGILLNE----QKYIDFGIKLASSYFGTYTQTASGIGPEGFAWVDS 354
Query: 52 --------------------FKVSSS--PLR-------LVFLRAASLPCQQNFRRN--TA 80
F V++ LR R Q+ +A
Sbjct: 355 VTGAGGSPPSSQSGFYSSAGFWVTAPYYILRPETLESLYYAYRVTGDSKWQDLAWEALSA 414
Query: 81 LEKHCRTEYGYTGIKNVYQEN-PQQDDVQQSFFLAETLKYLYLLFSDDSLLPL-----DQ 134
+E CR Y+ I +V Q N D +SF+ AE LKY YL+F+++S + + ++
Sbjct: 415 IEDACRAGSAYSSINDVTQANGGGASDDMESFWFAEALKYAYLIFAEESDVQVQATGGNK 474
Query: 135 WVFNSEGHPLPVK 147
+VFN+E HP ++
Sbjct: 475 FVFNTEAHPFSIR 487
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase,
catalytic domain {Fungus (Penicillium citrinum) [TaxId:
5077]}
Length = 475
Score = 135 bits (341), Expect = 6e-39
Identities = 47/186 (25%), Positives = 73/186 (39%), Gaps = 44/186 (23%)
Query: 1 MDHLGCFSGGMFGLAAHTRPNSELFNKYMDVAKGITNTCHEAYIQTATHI---------- 50
HL CF GG F L + ++D + + C Y T T I
Sbjct: 292 SQHLTCFDGGSFLLGGTVLDRQD----FIDFGLELVDGCEATYNSTLTKIGPDSWGWDPK 347
Query: 51 -------------GFKVSSS--PLR-------LVFLRAASLPCQQNFRRN--TALEKHCR 86
GF +SS LR R +++ N A+ CR
Sbjct: 348 KVPSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFVAINSTCR 407
Query: 87 TEYGYTGIKNVYQENP-QQDDVQQSFFLAETLKYLYLLFSDDSLLPL-----DQWVFNSE 140
T+ G+ + +V + N + D Q+SF AE +KY YL S+D+ + + +V+N+E
Sbjct: 408 TDSGFAAVSDVNKANGGSKYDNQESFLFAEVMKYSYLAHSEDAAWQVQKGGKNTFVYNTE 467
Query: 141 GHPLPV 146
HP+ V
Sbjct: 468 AHPISV 473
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 453
Score = 133 bits (336), Expect = 2e-38
Identities = 56/178 (31%), Positives = 79/178 (44%), Gaps = 36/178 (20%)
Query: 1 MDHLGCFSGGMFGLAAHTRPNSELFNKYMDVAKGITNTCHEAYIQTATHIG-----FKVS 55
MDHL CF G L + + +M++A+ + TC++ Q T + F +
Sbjct: 278 MDHLVCFLPGTLALGVYHGLPAS----HMELAQELMETCYQMNRQMETGLSPEIVHFNLY 333
Query: 56 SSP---------------LR-------LVFLRAASLPCQQNFRRN--TALEKHCRTEY-G 90
P LR R Q++ + + R G
Sbjct: 334 PQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGG 393
Query: 91 YTGIKNVYQEN-PQQDDVQQSFFLAETLKYLYLLFSDD-SLLPLDQWVFNSEGHPLPV 146
Y+ I NV P+ D +SFFL ETLKYL+LLFSDD +LL LD +VFN+E HPLP+
Sbjct: 394 YSSINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLSLDAYVFNTEAHPLPI 451
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 511
Score = 133 bits (335), Expect = 8e-38
Identities = 46/205 (22%), Positives = 79/205 (38%), Gaps = 51/205 (24%)
Query: 1 MDHLGCFSGGMFGLAAHT-------RPNSELFNKYMDVAKGITNTCHEAYIQTATHIG-- 51
MDHL CF GG+ + R D+AKGIT+TC++ Y Q+++ +
Sbjct: 302 MDHLVCFMGGLLASGSTEGLSIHEARRRPFFSKSDWDLAKGITDTCYQMYKQSSSGLAPE 361
Query: 52 -----------FKVSSSPLRLVFLRAASLPCQQN---------FRRNT------------ 79
S + F++ Q +
Sbjct: 362 IVVFNDGNIKQDGWWRSSVGDFFVKPLDRHNLQRPETVESIMFMYHLSHDHKYREWGAEI 421
Query: 80 --ALEKHCRTEYG------YTGIKNVYQENPQQDDVQQSFFLAETLKYLYLLFSDDSLLP 131
+ ++ + +T + + ++ + +SF+LAETLKYLY+LF D+
Sbjct: 422 ATSFFENTCVDCNDPKLRRFTSLSDCITLPTKKSNNMESFWLAETLKYLYILFLDE--FD 479
Query: 132 LDQWVFNSEGHPLPVKGKNDFYREA 156
L + VFN+E HP PV + ++
Sbjct: 480 LTKVVFNTEAHPFPVLDEEILKSQS 504
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase
{Bacillus sp. GL1 [TaxId: 84635]}
Length = 377
Score = 35.8 bits (82), Expect = 0.001
Identities = 6/41 (14%), Positives = 15/41 (36%)
Query: 3 HLGCFSGGMFGLAAHTRPNSELFNKYMDVAKGITNTCHEAY 43
+ G+ +A+ + +++D AK + Y
Sbjct: 281 ASAITACGLLEIASQLDESDPERQRFIDAAKTTVTALRDGY 321
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.2 bits (47), Expect = 6.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 71 CQQNFRRNTALEKHCRT 87
C + FR N+A+ KH T
Sbjct: 9 CTKMFRDNSAMRKHLHT 25
>d2ilxa1 d.61.1.3 (A:1-219) 2',3'-cyclic nucleotide
3'-phosphodiesterase, catalytic domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 219
Score = 24.4 bits (53), Expect = 7.1
Identities = 17/84 (20%), Positives = 26/84 (30%)
Query: 35 ITNTCHEAYIQTATHIGFKVSSSPLRLVFLRAASLPCQQNFRRNTALEKHCRTEYGYTGI 94
+ + H FK L F + HC T++ G
Sbjct: 22 LRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLDLVSYFGKRPPGVLHCTTKFCDYGK 81
Query: 95 KNVYQENPQQDDVQQSFFLAETLK 118
+E QQD V++S+ A L
Sbjct: 82 ATGAEEYAQQDVVRRSYGKAFKLS 105
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 22.3 bits (48), Expect = 7.9
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 71 CQQNFRRNTALEKHCRTEYGYTGIK 95
C + F R+ L++H RT +TG K
Sbjct: 10 CGKRFTRSDELQRHKRT---HTGEK 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.414
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 600,561
Number of extensions: 24418
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 16
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.1 bits)