BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7224
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NXC|A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals
The Molecular Basis For Substrate Specificity Among
Class I Enzymes (Family 47 Glycosidases)
Length = 478
Score = 210 bits (534), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 92/163 (56%), Positives = 129/163 (79%)
Query: 6 ELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDS 65
E+SVFE IRF+G +L+ Y +G+ ++R KAV + K+LPAF TP+GIP AL+N+ +G
Sbjct: 100 EVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSGIG 159
Query: 66 KNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYL 125
+N+ WASG +SIL+E GTLHLEF++LS ++G+P++ EKV KIR+V++ ++KP GLYPNYL
Sbjct: 160 RNWPWASGGSSILAEFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLDKPEGLYPNYL 219
Query: 126 NPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESF 168
NP +G WGQ H+S+G LGDSFYEYLLKAW+ S+K D E + +
Sbjct: 220 NPSSGQWGQHHVSVGGLGDSFYEYLLKAWLMSDKTDLEAKKMY 262
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 201 RVTKDPKYREWGWDYVQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIID 260
R D RE +MM HAW+NY YAWG NELKP+S+ GHS S+FG+ + G TI+D
Sbjct: 10 REPADATIREKRAKIKEMMTHAWNNYKRYAWGLNELKPISKEGHSSSLFGNIK-GATIVD 68
Query: 261 GLDTLYIMGLTDEYEDGKKWVAESLTLD 288
LDTL+IMG+ E+++ K W+ + L +
Sbjct: 69 ALDTLFIMGMKTEFQEAKSWIKKYLDFN 96
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 103/229 (44%), Gaps = 37/229 (16%)
Query: 20 ILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILS 79
+ L +GDP++ +K + I +L P G+ +N +G W S+
Sbjct: 182 FMHLSHLSGDPVFAEKVMKI-RTVLNKLDKPEGLYPNYLNPSSGQ-----WGQHHVSV-G 234
Query: 80 ELGTLHLEFVYLS-------DVTGNPIYREKVEKIRSVISSIEKPNGLYP-------NYL 125
LG E++ + D+ +Y + V+ I + + I K +G L
Sbjct: 235 GLGDSFYEYLLKAWLMSDKTDLEAKKMYFDAVQAIETHL--IRKSSGGLTYIAEWKGGLL 292
Query: 126 NPKTGHWGQSHISMGALG-DSFYEYLLKAWIQSNKEDTE-------------GPESFKFT 171
K GH M ALG D E + +++ E GPE+F+F
Sbjct: 293 EHKMGHLTCFAGGMFALGADGAPEARAQHYLELGAEIARTCHESYNRTYVKLGPEAFRFD 352
Query: 172 DTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQMMK 220
+EA A R +KYYILRPEVIE+Y Y+WR+T DPKYR W W+ V+ ++
Sbjct: 353 GGVEAIATRQNEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEAVEALE 401
>pdb|1FMI|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase
Length = 458
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 107/167 (64%), Gaps = 8/167 (4%)
Query: 1 MKQKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINV 60
++ +++++FE+TIR +G +L+ Y +GD ++ KA ++++PAF+TP+ IP++ +N+
Sbjct: 81 FEKDVDVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAFRTPSKIPYSDVNI 140
Query: 61 YTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIE-KPNG 119
TG + W S S ++E+ ++ LEF LS +TG+ ++E VEK+ I + K +G
Sbjct: 141 GTGVAHPPRWTSDST--VAEVTSIQLEFRELSRLTGDKKFQEAVEKVTQHIHGLSGKKDG 198
Query: 120 LYPNYLNPKTG---HWGQSHISMGALGDSFYEYLLKAWIQSNKEDTE 163
L P ++N +G H G ++GA DS+YEYLLK WIQ K++T+
Sbjct: 199 LVPMFINTHSGLFTHLGV--FTLGARADSYYEYLLKQWIQGGKQETQ 243
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 7/81 (8%)
Query: 208 YREWGWDYVQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYI 267
YR+ G + + HAW Y +AWG +ELKP+SR FG LG+T+ID LDT++I
Sbjct: 9 YRQKG--VIDVFLHAWKGYRKFAWGHDELKPVSRS--FSEWFG---LGLTLIDALDTMWI 61
Query: 268 MGLTDEYEDGKKWVAESLTLD 288
+GL E+E+ +KWV++ L +
Sbjct: 62 LGLRKEFEEARKWVSKKLHFE 82
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 30/38 (78%)
Query: 180 RSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQ 217
+ D++ +LRPE +ES FYL+RVT D KY++WGW+ +Q
Sbjct: 349 KPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQ 386
>pdb|1X9D|A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase
In Complex With Thio-Disaccharide Substrate Analogue
Length = 538
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 107/165 (64%), Gaps = 4/165 (2%)
Query: 1 MKQKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINV 60
++ +++++FE+TIR +G +L+ Y +GD ++ KA ++++PAF+TP+ IP++ +N+
Sbjct: 159 FEKDVDVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAFRTPSKIPYSDVNI 218
Query: 61 YTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIE-KPNG 119
TG + W S S ++E+ ++ LEF LS +TG+ ++E VEK+ I + K +G
Sbjct: 219 GTGVAHPPRWTSDST--VAEVTSIQLEFRELSRLTGDKKFQEAVEKVTQHIHGLSGKKDG 276
Query: 120 LYPNYLNPKTGHWGQSHI-SMGALGDSFYEYLLKAWIQSNKEDTE 163
L P ++N +G + + ++GA DS+YEYLLK WIQ K++T+
Sbjct: 277 LVPMFINTHSGLFTHLGVFTLGARADSYYEYLLKQWIQGGKQETQ 321
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 7/81 (8%)
Query: 208 YREWGWDYVQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYI 267
YR+ G + + HAW Y +AWG +ELKP+SR FG LG+T+ID LDT++I
Sbjct: 87 YRQKG--VIDVFLHAWKGYRKFAWGHDELKPVSRS--FSEWFG---LGLTLIDALDTMWI 139
Query: 268 MGLTDEYEDGKKWVAESLTLD 288
+GL E+E+ +KWV++ L +
Sbjct: 140 LGLRKEFEEARKWVSKKLHFE 160
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 30/38 (78%)
Query: 180 RSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQ 217
+ D++ +LRPE +ES FYL+RVT D KY++WGW+ +Q
Sbjct: 427 KPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQ 464
>pdb|1FO2|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With 1-Deoxymannojirimycin
pdb|1FO3|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With Kifunensine
Length = 460
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 107/167 (64%), Gaps = 8/167 (4%)
Query: 1 MKQKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINV 60
++ +++++FE+TIR +G +L+ Y +GD ++ KA ++++PAF+TP+ IP++ +N+
Sbjct: 81 FEKDVDVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAFRTPSKIPYSDVNI 140
Query: 61 YTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIE-KPNG 119
TG + W S S ++E+ ++ LEF LS +TG+ ++E VEK+ I + K +G
Sbjct: 141 GTGVAHPPRWTSDST--VAEVTSIQLEFRELSRLTGDKKFQEAVEKVTQHIHGLSGKKDG 198
Query: 120 LYPNYLNPKTG---HWGQSHISMGALGDSFYEYLLKAWIQSNKEDTE 163
L P ++N +G H G ++GA DS+YEYLLK WIQ K++T+
Sbjct: 199 LVPMFINTHSGLFTHLGV--FTLGARADSYYEYLLKQWIQGGKQETQ 243
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 7/81 (8%)
Query: 208 YREWGWDYVQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYI 267
YR+ G + + HAW Y +AWG +ELKP+SR FG LG+T+ID LDT++I
Sbjct: 9 YRQKG--VIDVFLHAWKGYRKFAWGHDELKPVSRS--FSEWFG---LGLTLIDALDTMWI 61
Query: 268 MGLTDEYEDGKKWVAESLTLD 288
+GL E+E+ +KWV++ L +
Sbjct: 62 LGLRKEFEEARKWVSKKLHFE 82
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 30/38 (78%)
Query: 180 RSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQ 217
+ D++ +LRPE +ES FYL+RVT D KY++WGW+ +Q
Sbjct: 349 KPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQ 386
>pdb|1DL2|A Chain A, Crystal Structure Of Class I Alpha-1,2-Mannosidase From
Saccharomyces Cerevisiae At 1.54 Angstrom Resolution
Length = 511
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 101/166 (60%), Gaps = 14/166 (8%)
Query: 6 ELSVFETTIRFIGAILTLYSFT------GDPMYRDKAVHIADKMLPAF-KTPTGIPHALI 58
E++VFETTIR +G +L+ Y + +Y +KA+ + D++ AF T TGIP++ I
Sbjct: 94 EVNVFETTIRMLGGLLSAYHLSDVLEVGNKTVYLNKAIDLGDRLALAFLSTQTGIPYSSI 153
Query: 59 NVYTGDS-KNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVI----SS 113
N+++G + KN+A G AS +E TL +EF YL+ +TGN Y E VE++ +
Sbjct: 154 NLHSGQAVKNHA--DGGASSTAEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNNDL 211
Query: 114 IEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNK 159
+ +GL P Y P TG +G S I G+ GDSFYEYLLK ++ +++
Sbjct: 212 LNTYDGLVPIYTFPDTGKFGASTIRFGSRGDSFYEYLLKQYLLTHE 257
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 183 DKYYILRPEVIESYFYLWRVTKDPKYREWG 212
D++ + RPE +ES +++ ++ D KYREWG
Sbjct: 389 DRHNLQRPETVESIMFMYHLSHDHKYREWG 418
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 218 MMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIM 268
M +W +Y + WG + P+ H+ G+ LG I+D +DTL +M
Sbjct: 12 MFLESWRDYSKHGWGYDVYGPIEHTSHNMPR-GNQPLGWIIVDSVDTLMLM 61
>pdb|1G6I|A Chain A, Crystal Structure Of The Yeast Alpha-1,2-Mannosidase With
Bound 1- Deoxymannojirimycin At 1.59 A Resolution
Length = 545
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 101/166 (60%), Gaps = 14/166 (8%)
Query: 6 ELSVFETTIRFIGAILTLYSFT------GDPMYRDKAVHIADKMLPAF-KTPTGIPHALI 58
E++VFETTIR +G +L+ Y + +Y +KA+ + D++ AF T TGIP++ I
Sbjct: 128 EVNVFETTIRMLGGLLSAYHLSDVLEVGNKTVYLNKAIDLGDRLALAFLSTQTGIPYSSI 187
Query: 59 NVYTGDS-KNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVI----SS 113
N+++G + KN+A G AS +E TL +EF YL+ +TGN Y E VE++ +
Sbjct: 188 NLHSGQAVKNHA--DGGASSTAEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNNDL 245
Query: 114 IEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNK 159
+ +GL P Y P TG +G S I G+ GDSFYEYLLK ++ +++
Sbjct: 246 LNTYDGLVPIYTFPDTGKFGASTIRFGSRGDSFYEYLLKQYLLTHE 291
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 183 DKYYILRPEVIESYFYLWRVTKDPKYREWG 212
D++ + RPE +ES +++ ++ D KYREWG
Sbjct: 423 DRHNLQRPETVESIMFMYHLSHDHKYREWG 452
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 204 KDPKYREWGWDYVQ-MMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGL 262
K P E D ++ M +W +Y + WG + P+ H+ G+ LG I+D +
Sbjct: 31 KSPGAGEMDRDRIESMFLESWRDYSKHGWGYDVYGPIEHTSHNMPR-GNQPLGWIIVDSV 89
Query: 263 DTLYIM---------GLTDEYEDGKKWVAESLTLD 288
DTL +M E + + W+ + L D
Sbjct: 90 DTLMLMYNSSTLYKSEFEAEIQRSEHWINDVLDFD 124
>pdb|4AYO|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31
pdb|4AYP|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With
Thiomannobioside
pdb|4AYQ|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With
Mannoimidazole
pdb|4AYR|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With Noeuromycin
Length = 447
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 9 VFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFK-TPTGIPHALINVYTGDSKN 67
VFET IR +G +L+ + +GDP+ KA +AD++ AF+ +P G+P +N+ TG
Sbjct: 96 VFETNIRLVGGLLSAHLASGDPVLLAKARDLADRLAKAFEASPHGLPWRYVNLRTGA--- 152
Query: 68 YAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNP 127
S + L+E+GT EF LS +TG Y + ++ GL ++
Sbjct: 153 ---VSDPETNLAEIGTYLSEFGVLSQLTGERKYFDMAKRAMRHTLDRRSKIGLMAANIHA 209
Query: 128 KTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTE 163
TG + + S+ DSFYEYL AW ED +
Sbjct: 210 MTGAFTSRNASIDVYADSFYEYLWDAWALFGDEDCK 245
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 222 AWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYEDGKKWV 281
AW YV AWGK+E+ P+S S I G +LG+++++ LDTL+IMGL E++ G WV
Sbjct: 24 AWQGYVAKAWGKDEINPVSGTSRSFFIEGH-DLGLSLVEALDTLWIMGLDAEFQAGVDWV 82
Query: 282 AESLTLD 288
+L+ D
Sbjct: 83 KANLSFD 89
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 172 DTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYVTYAW 231
++++ + + K+ LRPE ++ LW + +DP+YR + + MK A+
Sbjct: 323 ESIDVTTGQPRRKHTGLRPEYPDACLNLWLIDRDPRYRRLAAIHYREMKAT----SRAAF 378
Query: 232 GKNELKPLSRR 242
G LK ++ R
Sbjct: 379 GYTALKDITTR 389
>pdb|2RI8|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI8|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI9|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
pdb|2RI9|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
Length = 475
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 22/171 (12%)
Query: 2 KQKIELSVFETTIRFIGAILTLYSFTGDPMYR------------DKAVHIADKMLPAFKT 49
K +S+FETTIR++ +L+ Y P D++ ++AD + AF T
Sbjct: 78 KTSDTVSLFETTIRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQSRNLADVLKFAFDT 137
Query: 50 PTGIPHALINVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRS 109
P+G+P+ IN+ T + A +G L+ GTL LE+ LSD+TG+ Y + +K S
Sbjct: 138 PSGVPYNNINI-TSHGNDGATTNG----LAVTGTLVLEWTRLSDLTGDEEYAKLSQKAES 192
Query: 110 VI-----SSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWI 155
+ SS E GL + +N G + S +S DSFYEYL+K ++
Sbjct: 193 YLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNGGDDSFYEYLIKMYV 243
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 186 YILRPEVIESYFYLWRVTKDPKYREWGWD 214
Y+LRPEVIES++Y RVT YR+W W+
Sbjct: 369 YVLRPEVIESFYYAHRVTGKEIYRDWVWN 397
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 217 QMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTD 272
+ +HAW+ Y+ YA+ +EL P+S GH+ S G G + +D L T IMG D
Sbjct: 11 EAFQHAWNGYMKYAFPHDELTPVS-NGHADSRNG---WGASAVDALSTAVIMGKAD 62
>pdb|1KKT|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KKT|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|A Chain A, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|B Chain B, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
Length = 511
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 22/166 (13%)
Query: 7 LSVFETTIRFIGAILTLYSFTGDPMYR------------DKAVHIADKMLPAFKTPTGIP 54
+S+FETTIR++ +L+ Y P D++ ++AD + AF TP+G+P
Sbjct: 118 VSLFETTIRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQSRNLADVLKFAFDTPSGVP 177
Query: 55 HALINVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVI--- 111
+ IN+ T + A +G L+ GTL LE+ LSD+TG+ Y + +K S +
Sbjct: 178 YNNINI-TSHGNDGATTNG----LAVTGTLVLEWTRLSDLTGDEEYAKLSQKAESYLLKP 232
Query: 112 --SSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWI 155
SS E GL + +N G + S +S DSFYEYL+K ++
Sbjct: 233 QPSSSEPFPGLVGSSININDGQFADSRVSWNGGDDSFYEYLIKMYV 278
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 186 YILRPEVIESYFYLWRVTKDPKYREWGWD 214
Y+LRPEVIES++Y RVT YR+W W+
Sbjct: 404 YVLRPEVIESFYYAHRVTGKEIYRDWVWN 432
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 205 DPKYREWGWDYV-QMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLD 263
+PK + D V + +HAW+ Y+ YA+ +EL P+S GH+ S G G + +D L
Sbjct: 33 EPKSNQAKADAVKEAFQHAWNGYMKYAFPHDELTPVS-NGHADSRNG---WGASAVDALS 88
Query: 264 TLYIMGLTD 272
T IMG D
Sbjct: 89 TAVIMGKAD 97
>pdb|1HCU|A Chain A, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|B Chain B, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|C Chain C, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|D Chain D, Alpha-1,2-Mannosidase From Trichoderma Reesei
Length = 503
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 20/164 (12%)
Query: 8 SVFETTIRFIGAILTLYSFTGDPMYR------------DKAVHIADKMLPAFKTPTGIPH 55
SVFET IR++G +L+ Y P +A +A+ + AF TP+G+P
Sbjct: 97 SVFETNIRYLGGLLSAYDLLRGPFSSLATNQTLVNSLLRQAQTLANGLKVAFTTPSGVPD 156
Query: 56 ALINVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVI---- 111
+ ++ A S++ ++E+G+L LE+ LSD+TGNP Y + +K S +
Sbjct: 157 PTVFFNPTVRRSGA----SSNNVAEIGSLVLEWTRLSDLTGNPQYAQLAQKGESYLLNPK 212
Query: 112 SSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWI 155
S E GL +++ G + S S L DSFYEYL+K ++
Sbjct: 213 GSPEAWPGLIGTFVSTSNGTFQDSSGSWSGLMDSFYEYLIKMYL 256
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 15/74 (20%)
Query: 164 GPESFKFTDTL----------EAKAYRSQD-----KYYILRPEVIESYFYLWRVTKDPKY 208
GPE F + D++ ++ Y S YYILRPE +ES +Y +RVT D K+
Sbjct: 351 GPEGFAWVDSVTGAGGSPPSSQSGFYSSAGFWVTAPYYILRPETLESLYYAYRVTGDSKW 410
Query: 209 REWGWDYVQMMKHA 222
++ W+ + ++ A
Sbjct: 411 QDLAWEALSAIEDA 424
>pdb|3NWR|A Chain A, Crystal Structure Of A Rubisco-Like Protein From
Burkholderia Fungorum
Length = 432
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 71 ASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEK 116
A+ +A+++ EL ++F+ +V NP + E++R+V+S + +
Sbjct: 176 AAETAALVRELCEAGVDFIXDDEVCANPAHAPLAERVRAVMSEVRR 221
>pdb|2CV9|A Chain A, Crystal Structure Of A Hypothetical Protein From Thermus
Thermophilus Hb8
pdb|2CV9|B Chain B, Crystal Structure Of A Hypothetical Protein From Thermus
Thermophilus Hb8
pdb|2CV9|C Chain C, Crystal Structure Of A Hypothetical Protein From Thermus
Thermophilus Hb8
pdb|2CV9|D Chain D, Crystal Structure Of A Hypothetical Protein From Thermus
Thermophilus Hb8
Length = 252
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 209 REWGWDYVQMMKHAWDNYVTYAWGKNE--LKPLS 240
RE G D V + HAWD+ YA ++E ++PL+
Sbjct: 54 REAGVDLVSLGNHAWDHKEVYALLESEPVVRPLN 87
>pdb|2Z06|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus
pdb|2Z06|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus
pdb|2Z06|C Chain C, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus
pdb|2Z06|D Chain D, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus
Length = 252
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 209 REWGWDYVQMMKHAWDNYVTYAWGKNE--LKPLS 240
RE G D V + HAWD+ YA ++E ++PL+
Sbjct: 54 REAGVDLVSLGNHAWDHKEVYALLESEPVVRPLN 87
>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5I|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5K|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5M|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
Length = 1193
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 27 TGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELGTLH 85
T DP+ ++A K L + GIPH L + SKNY + + L E GTLH
Sbjct: 103 TNDPLDVEQAFAFYVKTLTH--SGKGIPHILEHSVLSGSKNYNYKNSIG--LLEKGTLH 157
>pdb|1ZJC|A Chain A, Aminopeptidase S From S. Aureus
Length = 418
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 6 ELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHAL------IN 59
ELSV E I+FI + + G+ + HIA+ + A K HAL +
Sbjct: 164 ELSVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTD 223
Query: 60 VYTGDSKNYAWASGSASI 77
+ G +KN+ W ++ +
Sbjct: 224 LTVGLAKNHIWEDATSYV 241
>pdb|3CSK|A Chain A, Structure Of Dpp Iii From Saccharomyces Cerevisiae
Length = 711
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 124 YLNPKTGHWGQSHI 137
Y NPKTG WGQ H+
Sbjct: 566 YWNPKTGKWGQPHM 579
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,914,542
Number of Sequences: 62578
Number of extensions: 443147
Number of successful extensions: 1192
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1120
Number of HSP's gapped (non-prelim): 48
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)