RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7224
(297 letters)
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase,
structural genomics, PSI, protein initiative; HET: NAG
BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Length = 478
Score = 193 bits (493), Expect = 1e-58
Identities = 94/185 (50%), Positives = 136/185 (73%), Gaps = 7/185 (3%)
Query: 6 ELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDS 65
E+SVFE IRF+G +L+ Y +G+ ++R KAV + K+LPAF TP+GIP AL+N+ +G
Sbjct: 100 EVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSGIG 159
Query: 66 KNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYL 125
+N+ WASG +SIL+E GTLHLEF++LS ++G+P++ EKV KIR+V++ ++KP GLYPNYL
Sbjct: 160 RNWPWASGGSSILAEFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLDKPEGLYPNYL 219
Query: 126 NPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESFKFTDTLEAKAYRSQDKY 185
NP +G WGQ H+S+G LGDSFYEYLLKAW+ S+K D E + + A ++ + +
Sbjct: 220 NPSSGQWGQHHVSVGGLGDSFYEYLLKAWLMSDKTDLEAKKMYF-------DAVQAIETH 272
Query: 186 YILRP 190
I +
Sbjct: 273 LIRKS 277
Score = 99 bits (249), Expect = 6e-24
Identities = 38/73 (52%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 216 VQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYE 275
+MM HAW+NY YAWG NELKP+S+ GHS S+FG+ G TI+D LDTL+IMG+ E++
Sbjct: 25 KEMMTHAWNNYKRYAWGLNELKPISKEGHSSSLFGNI-KGATIVDALDTLFIMGMKTEFQ 83
Query: 276 DGKKWVAESLTLD 288
+ K W+ + L +
Sbjct: 84 EAKSWIKKYLDFN 96
Score = 89.6 bits (222), Expect = 2e-20
Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 24/223 (10%)
Query: 23 LYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELG 82
L +GDP++ +K + I L P G+ +N +G + + G S
Sbjct: 185 LSHLSGDPVFAEKVMKIRTV-LNKLDKPEGLYPNYLNPSSGQWGQHHVSVGGLGD-SFYE 242
Query: 83 TLHLEFVYL--SDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSHIS-- 138
L ++ +D+ +Y + V+ I + + Y H++
Sbjct: 243 YLLKAWLMSDKTDLEAKKMYFDAVQAIETHLIRKSSGGLTYIAEWKGGLLEHKMGHLTCF 302
Query: 139 ---MGALG-DSFYEYLLKAWIQSNKEDTE-------------GPESFKFTDTLEAKAYRS 181
M ALG D E + +++ E GPE+F+F +EA A R
Sbjct: 303 AGGMFALGADGAPEARAQHYLELGAEIARTCHESYNRTYVKLGPEAFRFDGGVEAIATRQ 362
Query: 182 QDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQ-MMKHAW 223
+KYYILRPEVIE+Y Y+WR+T DPKYR W W+ V+ + H
Sbjct: 363 NEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEAVEALESHCR 405
Score = 30.3 bits (68), Expect = 0.77
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 23 LYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSK 66
++ T DP YR A + + + G L +VY
Sbjct: 380 MWRLTHDPKYRTWAWEAVEALESHCRVNGGY-SGLRDVYIARES 422
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1,
2-alpha-mannosidase; substrate analogue, glycosyl
hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP:
a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Length = 538
Score = 176 bits (447), Expect = 1e-51
Identities = 62/193 (32%), Positives = 113/193 (58%), Gaps = 11/193 (5%)
Query: 1 MKQKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINV 60
++ +++++FE+TIR +G +L+ Y +GD ++ KA ++++PAF+TP+ IP++ +N+
Sbjct: 159 FEKDVDVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAFRTPSKIPYSDVNI 218
Query: 61 YTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSI-EKPNG 119
TG + W S S ++E+ ++ LEF LS +TG+ ++E VEK+ I + K +G
Sbjct: 219 GTGVAHPPRWTSD--STVAEVTSIQLEFRELSRLTGDKKFQEAVEKVTQHIHGLSGKKDG 276
Query: 120 LYPNYLNPKTGHWGQSH-ISMGALGDSFYEYLLKAWIQSNKEDTEGPESFKFTDTLEAKA 178
L P ++N +G + ++GA DS+YEYLLK WIQ K++T+ E + +A
Sbjct: 277 LVPMFINTHSGLFTHLGVFTLGARADSYYEYLLKQWIQGGKQETQLLEDYV-------EA 329
Query: 179 YRSQDKYYILRPE 191
+ + E
Sbjct: 330 IEGVRTHLLRHSE 342
Score = 93.6 bits (232), Expect = 1e-21
Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 24/229 (10%)
Query: 26 FTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELGTLH 85
TGD +++ + + G+ IN ++G + + A S L
Sbjct: 250 LTGDKKFQEAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLL 309
Query: 86 LEFVYL--SDVTGNPIYREKVEKIRSVISSIEKPNGLY------PNYLNPKTGHWG---Q 134
+++ + Y E +E +R+ + +P+ L + K H
Sbjct: 310 KQWIQGGKQETQLLEDYVEAIEGVRTHLLRHSEPSKLTFVGELAHGRFSAKMDHLVCFLP 369
Query: 135 SHISMGALGDSFYEY------LLKAWIQSNKEDTEG--PESFKF----TDTLEAKAYRSQ 182
+++G + L++ Q N++ G PE F +
Sbjct: 370 GTLALGVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHFNLYPQPGRRDVEVKPA 429
Query: 183 DKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQ-MMKHAWDNYVTYA 230
D++ +LRPE +ES FYL+RVT D KY++WGW+ +Q + Y+
Sbjct: 430 DRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYS 478
Score = 93.2 bits (231), Expect = 2e-21
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 216 VQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYE 275
+ + HAW Y +AWG +ELKP+SR LG+T+ID LDT++I+GL E+E
Sbjct: 93 IDVFLHAWKGYRKFAWGHDELKPVSRSFSE-----WFGLGLTLIDALDTMWILGLRKEFE 147
Query: 276 DGKKWVAESLTLD 288
+ +KWV++ L +
Sbjct: 148 EARKWVSKKLHFE 160
Score = 33.1 bits (75), Expect = 0.096
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 16 FIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDS 65
+ ++ LY TGD Y+D I + P+G ++ NV
Sbjct: 439 TVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYSSINNVQDPQK 488
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG;
2.37A {Trichoderma reesei} SCOP: a.102.2.1
Length = 503
Score = 174 bits (443), Expect = 4e-51
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 27/210 (12%)
Query: 6 ELSVFETTIRFIGAILTLYSFTGDP------------MYRDKAVHIADKMLPAFKTPTGI 53
SVFET IR++G +L+ Y P +A +A+ + AF TP+G+
Sbjct: 95 GSSVFETNIRYLGGLLSAYDLLRGPFSSLATNQTLVNSLLRQAQTLANGLKVAFTTPSGV 154
Query: 54 PHALINVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVI-- 111
P + ++ S++ ++E+G+L LE+ LSD+TGNP Y + +K S +
Sbjct: 155 PDPTVFFNPTVRRS----GASSNNVAEIGSLVLEWTRLSDLTGNPQYAQLAQKGESYLLN 210
Query: 112 --SSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESFK 169
S E GL +++ G + S S L DSFYEYL+K ++ + +
Sbjct: 211 PKGSPEAWPGLIGTFVSTSNGTFQDSSGSWSGLMDSFYEYLIKMYLYDPVAFAHYKDRWV 270
Query: 170 FTDTLEAKAYRSQDKYYILRPEVIESYFYL 199
S + P + +L
Sbjct: 271 -------LGADSTIGHLGSHPSTRKDLTFL 293
Score = 92.3 bits (229), Expect = 3e-21
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 216 VQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYE 275
+ +W+ Y +A+ ++L P+S G + IDGLDT +MG D
Sbjct: 20 KAAFQTSWNAYHHFAFPHDDLHPVSNSFDDE--RNG--WGSSAIDGLDTAILMGDADIVN 75
Query: 276 DGKKWVAE 283
++V +
Sbjct: 76 TILQYVPQ 83
Score = 81.1 bits (200), Expect = 2e-17
Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 42/237 (17%)
Query: 27 TGDPMYRDKAVHIADKMLPAFKTPT---GIPHALINVYTGD--SKNYAWASGSASILSEL 81
TG+P Y A +L +P G+ ++ G + +W+ S L
Sbjct: 192 TGNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGTFQDSSGSWSGLMDSFYEYL 251
Query: 82 GTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTG----HWGQS-- 135
++L ++ + + + S +L+ G
Sbjct: 252 IKMYLYD-PVAFAHYKDRWVLGADSTIGHLGSHPSTRKDLT-FLSSYNGQSTSPNSGHLA 309
Query: 136 -----HISMGALGDSFYEYLLKA--------WIQSNKEDTEGPESFKFTDT--------- 173
+ +G + + +Y+ + GPE F + D+
Sbjct: 310 SFGGGNFILGGILLNEQKYIDFGIKLASSYFGTYTQTASGIGPEGFAWVDSVTGAGGSPP 369
Query: 174 ------LEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQ-MMKHAW 223
+ + YYILRPE +ES +Y +RVT D K+++ W+ + +
Sbjct: 370 SSQSGFYSSAGFWVTAPYYILRPETLESLYYAYRVTGDSKWQDLAWEALSAIEDACR 426
Score = 29.9 bits (67), Expect = 1.2
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 23 LYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDS 65
Y TGD ++D A + A + + ++ +V +
Sbjct: 401 AYRVTGDSKWQDLAWEALSAIEDACRAGSAY-SSINDVTQANG 442
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative
conformations, modulation of activity, glycoprot
glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A
{Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A*
1kkt_A* 1kre_A* 1krf_A*
Length = 475
Score = 168 bits (426), Expect = 6e-49
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 29/215 (13%)
Query: 2 KQKIELSVFETTIRFIGAILTLYSFTGDP------------MYRDKAVHIADKMLPAFKT 49
K +S+FETTIR++ +L+ Y P D++ ++AD + AF T
Sbjct: 78 KTSDTVSLFETTIRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQSRNLADVLKFAFDT 137
Query: 50 PTGIPHALINVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRS 109
P+G+P+ IN+ + + + L+ GTL LE+ LSD+TG+ Y + +K S
Sbjct: 138 PSGVPYNNINITSHGNDGATT-----NGLAVTGTLVLEWTRLSDLTGDEEYAKLSQKAES 192
Query: 110 VI-----SSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEG 164
+ SS E GL + +N G + S +S DSFYEYL+K ++ K
Sbjct: 193 YLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNGGDDSFYEYLIKMYVYDPKRFETY 252
Query: 165 PESFKFTDTLEAKAYRSQDKYYILRPEVIESYFYL 199
+ + A S K+ P+ +L
Sbjct: 253 KDRWV-------LAAESTIKHLKSHPKSRPDLTFL 280
Score = 84.2 bits (208), Expect = 2e-18
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 216 VQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYE 275
+ +HAW+ Y+ YA+ +EL P+S G + +D L T IMG D
Sbjct: 10 KEAFQHAWNGYMKYAFPHDELTPVSNGHADS--RNG--WGASAVDALSTAVIMGKADVVN 65
Query: 276 DGKKWVAESLTLD 288
+ VA+
Sbjct: 66 AILEHVADIDFSK 78
Score = 79.6 bits (196), Expect = 7e-17
Identities = 40/233 (17%), Positives = 77/233 (33%), Gaps = 37/233 (15%)
Query: 26 FTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELGTLH 85
TGD Y + +L + + L+ + + +A S + +
Sbjct: 177 LTGDEEYAKLSQKAESYLLKPQPSSSEPFPGLVGSSI-NINDGQFADSRVSWNGGDDSFY 235
Query: 86 --LEFVYLSDVTGNPIYREKVEK-----IRSVISSIEKPNGLY------PNYLNPKTGH- 131
L +Y+ D Y+++ I+ + S + L + + H
Sbjct: 236 EYLIKMYVYDPKRFETYKDRWVLAAESTIKHLKSHPKSRPDLTFLSSYSNRNYDLSSQHL 295
Query: 132 ---WGQSHISMGALGDSFYEYLLKA--------WIQSNKEDTEGPESFKF---------T 171
G S +G +++ ++ GP+S+ +
Sbjct: 296 TCFDGGS-FLLGGTVLDRQDFIDFGLELVDGCEATYNSTLTKIGPDSWGWDPKKVPSDQK 354
Query: 172 DTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQ-MMKHAW 223
+ E + Y+LRPEVIES++Y RVT YR+W W+ +
Sbjct: 355 EFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFVAINSTCR 407
Score = 29.5 bits (66), Expect = 1.3
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 23 LYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDS 65
+ TG +YRD + + +T +G A+ +V +
Sbjct: 382 AHRVTGKEIYRDWVWNAFVAINSTCRTDSGF-AAVSDVNKANG 423
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase;
HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae}
SCOP: a.102.2.1 PDB: 1g6i_A*
Length = 511
Score = 164 bits (416), Expect = 3e-47
Identities = 62/166 (37%), Positives = 97/166 (58%), Gaps = 12/166 (7%)
Query: 6 ELSVFETTIRFIGAILTLYSFT------GDPMYRDKAVHIADKMLPAFK-TPTGIPHALI 58
E++VFETTIR +G +L+ Y + +Y +KA+ + D++ AF T TGIP++ I
Sbjct: 94 EVNVFETTIRMLGGLLSAYHLSDVLEVGNKTVYLNKAIDLGDRLALAFLSTQTGIPYSSI 153
Query: 59 NVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVI----SSI 114
N+++G + G+ S +E TL +EF YL+ +TGN Y E VE++ + +
Sbjct: 154 NLHSGQAVKNHADGGA-SSTAEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNNDLL 212
Query: 115 EKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKE 160
+GL P Y P TG +G S I G+ GDSFYEYLLK ++ +++
Sbjct: 213 NTYDGLVPIYTFPDTGKFGASTIRFGSRGDSFYEYLLKQYLLTHET 258
Score = 89.3 bits (221), Expect = 4e-20
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 216 VQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMG------ 269
M +W +Y + WG + P+ H+ G+ LG I+D +DTL +M
Sbjct: 10 ESMFLESWRDYSKHGWGYDVYGPIEHTSHN-MPRGNQPLGWIIVDSVDTLMLMYNSSTLY 68
Query: 270 ---LTDEYEDGKKWVAESLTLD 288
E + + W+ + L D
Sbjct: 69 KSEFEAEIQRSEHWINDVLDFD 90
Score = 78.5 bits (193), Expect = 2e-16
Identities = 41/245 (16%), Positives = 81/245 (33%), Gaps = 51/245 (20%)
Query: 27 TGDPMYRDKAVHIAD---KMLPAFKTPTGIPHALINVYTGDS--KNYAWASGSASILSEL 81
TG+ Y + + + K T G+ TG + S S L
Sbjct: 189 TGNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTFPDTGKFGASTIRFGSRGDSFYEYL 248
Query: 82 GTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGL-----YPNYLNPKTGHWGQSH 136
+L + +YR+ +E ++ + + KP+ L L+ +
Sbjct: 249 LKQYL---LTHETLYYDLYRKSMEGMKKHLLAQSKPSSLWYIGEREQGLHGQLSPKMDHL 305
Query: 137 ISMG----ALGDSFYEYLLKAWIQS--NKEDTE--------------------GPESFKF 170
+ A G + + +A + +K D + PE F
Sbjct: 306 VCFMGGLLASGSTEGLSIHEARRRPFFSKSDWDLAKGITDTCYQMYKQSSSGLAPEIVVF 365
Query: 171 TD-----------TLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQ-M 218
D ++ + D++ + RPE +ES +++ ++ D KYREWG +
Sbjct: 366 NDGNIKQDGWWRSSVGDFFVKPLDRHNLQRPETVESIMFMYHLSHDHKYREWGAEIATSF 425
Query: 219 MKHAW 223
++
Sbjct: 426 FENTC 430
Score = 31.9 bits (72), Expect = 0.24
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 23 LYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPH-----ALINVYTGDSK 66
+Y + D YR+ IA P +L + T +K
Sbjct: 405 MYHLSHDHKYREWGAEIATSFFENTCVDCNDPKLRRFTSLSDCITLPTK 453
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.026
Identities = 47/295 (15%), Positives = 79/295 (26%), Gaps = 131/295 (44%)
Query: 8 SVFETTIRFIGAI-----------------LTLYSFTGDPMYRDKAVH-IADKMLPAFKT 49
+ E +F+G + L L F + +H +A K+L T
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL-EGNDIHALAAKLLQENDT 114
Query: 50 PTGIPHALINVY-------------TGDSK-NYAWASGSASI-------------LSELG 82
LI Y +S A G+A + EL
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 83 TLH-------LEFVYLSDVTGNPIYRE--KVEKIRS----VISSIEKPN----------- 118
L+ + + S T + + R EK+ + ++ +E P+
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 119 -------GLY--PNY--------LNPK---------TGHWGQS-----HISMGALGDSFY 147
G+ +Y P TGH Q I+ +SF+
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH-SQGLVTAVAIAETDSWESFF 293
Query: 148 EYLLKA-----WIQSNKEDTEGPESFKFTDTLEAKAYRSQDKY--YILRPEVIES 195
+ KA +I G R + Y L P ++E
Sbjct: 294 VSVRKAITVLFFI--------G--------------VRCYEAYPNTSLPPSILED 326
Score = 31.6 bits (71), Expect = 0.43
Identities = 46/229 (20%), Positives = 72/229 (31%), Gaps = 84/229 (36%)
Query: 91 LSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSHISM--GALGDSFYE 148
LS ++ +E+V+ + K N +L P IS+ GA +
Sbjct: 339 LS-ISNLT--QEQVQDY------VNKTNS----HL-PAGKQ---VEISLVNGA--KNL-- 377
Query: 149 YLLKAWIQSNKEDTEG-PES-FKFTDTLE-AKAYRSQDKYYIL---RPEVIESYF----- 197
+ S G P+S + TL AKA D+ I R + F
Sbjct: 378 ------VVS------GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 198 -----YLWRVT----KDPKYREWGWDYVQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSI 248
L + KD ++ + +D T+ G + R SGSI
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD---TFD-GSD------LRVLSGSI 475
Query: 249 FGSAELGMTIIDGLDTLYIMGLTDEYEDGKKWVAESLTLDDKTHKVVMG 297
I+D + L + KW E+ T TH + G
Sbjct: 476 SER------IVDCIIRLPV-----------KW--ETTTQFKATHILDFG 505
Score = 27.7 bits (61), Expect = 6.6
Identities = 9/17 (52%), Positives = 10/17 (58%), Gaps = 5/17 (29%)
Query: 250 GSAELGMTIIDGLDTLY 266
GS E GM G+D LY
Sbjct: 1625 GSQEQGM----GMD-LY 1636
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.89A {Listeria innocua}
Length = 349
Score = 34.2 bits (78), Expect = 0.040
Identities = 17/150 (11%), Positives = 43/150 (28%), Gaps = 9/150 (6%)
Query: 12 TTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTG-IPHALINVYTGDSKNYAW 70
FI LY+ + Y + A+ + G + + + G
Sbjct: 151 VNAPFIILSCWLYNELNETKYLEWAMKTYEWQTKVLVREDGFVEDGINRLEDGTIDYEWK 210
Query: 71 ASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTG 130
+ + G + L +T IY + K ++ +G++ + N
Sbjct: 211 FTYNQ------GVYIGANLELYRITKEAIYLDTANKTAAISLKELTEDGIFKDEGNGGDE 264
Query: 131 HWGQSHIS--MGALGDSFYEYLLKAWIQSN 158
+ L + + ++ ++
Sbjct: 265 GLFKGIFYRYFTDLIEETANKTYRDFVLNS 294
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.063
Identities = 42/305 (13%), Positives = 87/305 (28%), Gaps = 97/305 (31%)
Query: 33 RDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNY--AWASGSASILSELGT----LHL 86
R K V D + A T + H + + + K+ + L L
Sbjct: 273 RFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 87 EFV--YLSDVTGNPIYREKV--EKIRSVI-SSIE--KPNGLYPNYLN----PKTGHWGQS 135
+ + D + V +K+ ++I SS+ +P + P +
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-----SA 385
Query: 136 HISMGALGDSFYEYLLKAWIQSNKEDTE--------------GPESFKFT---------- 171
HI L L+ W K D P+ +
Sbjct: 386 HIPTILLS------LI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 172 -----DTLEAK---AYRSQDKYYI--LRPEVIESYFY------LWRVTKDPKYREWGWDY 215
L Y + L P ++ YFY L + +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP--------ER 489
Query: 216 VQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTL-----YIMGL 270
+ + + ++ + + + +++ H + + ++ +I++ L L YI
Sbjct: 490 MTLFRMV---FLDFRFLEQKIR------HDSTAWNASG---SILNTLQQLKFYKPYICDN 537
Query: 271 TDEYE 275
+YE
Sbjct: 538 DPKYE 542
Score = 30.6 bits (68), Expect = 0.83
Identities = 23/244 (9%), Positives = 53/244 (21%), Gaps = 81/244 (33%)
Query: 30 PMYRDKAV------HIADKMLPAFKTP-----TGIPHALINVY----------------- 61
++ D V + D A+
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 62 --TGDSKNYAW-ASGSASILSELGTLHLEFVYLSDVTGN--------PIYR-EKVEKIRS 109
NY + S + + + ++ D N + R + K+R
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 110 VISSIEKPNGL-----------------YPNY----LNPKTGHWGQSHISMGALG--DSF 146
+ + + +Y W +++ ++
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW----LNLKNCNSPETV 198
Query: 147 YEYLLKAWIQSNKEDTEGPESFK--FTDTLEAKAYRS---QDKYY-----ILR----PEV 192
E L K Q + T + +A + K Y +L +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 193 IESY 196
++
Sbjct: 259 WNAF 262
Score = 28.7 bits (63), Expect = 3.0
Identities = 28/201 (13%), Positives = 60/201 (29%), Gaps = 61/201 (30%)
Query: 131 HWGQSHISMGALGDSFYEY--LLKAWIQSNKEDTEGPESFKFTDTLEA-KAYRSQ---DK 184
H H+ G+ Y+Y +L + + ++ F D + K+ S+ D
Sbjct: 1 HHHHHHMDF-ETGEHQYQYKDILSVFEDAFVDN------FDCKDVQDMPKSILSKEEIDH 53
Query: 185 YYILRPEVIESYFYLW-------RVTK-------DPKYREWGWDYVQ-------MMKHAW 223
+ + V + W + + Y ++ ++ MM +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMY 112
Query: 224 DNYVTYAWGKNELKP---LSRRGHSGSIFGSAELGMTIIDGLDTL----YI----MGLTD 272
+ N++ +SR + + + L L + + +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRL----------QPYLKLRQALLELRPAKNVLIDGVLGS- 161
Query: 273 EYEDGKKWVAESLTLDDKTHK 293
GK WVA + L K
Sbjct: 162 ----GKTWVALDVCLSYKVQC 178
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A
{Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Length = 397
Score = 31.1 bits (70), Expect = 0.45
Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 12/128 (9%)
Query: 23 LYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELG 82
Y GD + + ADK++ ++ G + Y I+ L
Sbjct: 126 EYRINGDVKALEATIKAADKLMERYQEKGGF------IQAWGELGYKEHYR--LIIDCLL 177
Query: 83 TLHLEFVYLSDVTGNPIYREKVEK-IRSVISSIEKPNGLYPN--YLNPKTGHWGQSHISM 139
+ L F + + TG+ YR+ + +++ + + + Y +P+TG +
Sbjct: 178 NIQLLF-FAYEQTGDEKYRQVAVNHFYASANNVVRDDSSAFHTFYFDPETGEPLKGVTRQ 236
Query: 140 GALGDSFY 147
G +S +
Sbjct: 237 GYSDESSW 244
Score = 26.8 bits (59), Expect = 9.8
Identities = 6/40 (15%), Positives = 12/40 (30%)
Query: 16 FIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPH 55
+ G + Y + D ++ A L + H
Sbjct: 73 WTGCLWLAYEYNQDKKLKNIAHKNVLSFLNRINNRIALDH 112
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein;
2.60A {Homo sapiens} PDB: 3e73_A*
Length = 411
Score = 30.9 bits (69), Expect = 0.48
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 19 AILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDS 65
A LTLY+ T D Y +A A+ L + P +++ G +
Sbjct: 343 AFLTLYNLTQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFEGMA 389
Score = 27.1 bits (59), Expect = 7.2
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 196 YFYLWRVTKDPKYREWGWDYVQMMKHAWDNY 226
Y +L+ V DP Y + YV+ +
Sbjct: 84 YLHLYDVFGDPAYLQLAHGYVKQSLNCLTKR 114
Score = 27.1 bits (59), Expect = 7.6
Identities = 19/107 (17%), Positives = 29/107 (27%), Gaps = 22/107 (20%)
Query: 16 FIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSA 75
I ++ Y + Y A AD +I Y K Y GSA
Sbjct: 294 VIYMLIQAYKVFREEKYLCDAYQCAD---------------VIWQYGLLKKGYGLCHGSA 338
Query: 76 SILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYP 122
F+ L ++T + Y + K + P
Sbjct: 339 GNA-------YAFLTLYNLTQDMKYLYRACKFAEWCLEYGEHGCRTP 378
>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}
Length = 496
Score = 30.3 bits (68), Expect = 0.86
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 149 YLLKAWIQSNKEDTEGPESFKFTDTL 174
+L K + SN D E PE F +T+
Sbjct: 136 FLNKTLVHSNSHDPESPEEFTIRNTV 161
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; 1.60A {Bacillus subtilis}
SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Length = 373
Score = 29.3 bits (65), Expect = 1.5
Identities = 13/94 (13%), Positives = 24/94 (25%), Gaps = 12/94 (12%)
Query: 13 TIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWAS 72
I+ + LY T D Y A + +T G + W
Sbjct: 89 AIQAGLILFPLYEQTKDERYVKAAKRLRSLYGTLNRTSEGGFW-----HKDGYPYQMWLD 143
Query: 73 GSASILSELGTLHLEFVYLSDVTGNPIYREKVEK 106
G L + +++ ++V
Sbjct: 144 G-------LYMGGPFALKYANLKQETELFDQVVL 170
Score = 28.5 bits (63), Expect = 2.9
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 16 FIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTG 63
F+ +L L+ TG+ Y + A AD ++ L + G
Sbjct: 46 FLCGVLRLWEATGEKRYFEYAKAYADLLIDDNGNLLFRRDELDAIQAG 93
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside
hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A*
2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Length = 377
Score = 29.2 bits (65), Expect = 1.9
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 16 FIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPH 55
+ G + Y +TGD YR+ AV + H
Sbjct: 47 WSGILWLCYEYTGDEQYREGAVRTVASFRERLDRFENLDH 86
Score = 27.2 bits (60), Expect = 7.1
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 197 FYLWRVTKDPKYREWGWDYVQMMKHAWDNY 226
+ + T D +YRE V + D +
Sbjct: 52 WLCYEYTGDEQYREGAVRTVASFRERLDRF 81
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN
protein structure initiative; 2.30A {Vibrio
parahaemolyticus}
Length = 586
Score = 29.0 bits (64), Expect = 2.2
Identities = 16/117 (13%), Positives = 37/117 (31%)
Query: 19 AILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASIL 78
A + L+ T + Y +++ A +++ + I H G + A +
Sbjct: 311 ASVELFKATKETRYLEESRLWAQRLVARQMSDEQIQHFWSANQDGSRPYFHAAEAGLPTI 370
Query: 79 SELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQS 135
+ L +E + + I E + + + P G Y+ +
Sbjct: 371 ALCEYLAIEDDSVQTESVKCIVNRACEFEIKISNKVTNPFGYPRQYVKGVNESKRDA 427
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein
family; HET: BMA; 1.60A {Salmonella typhimurium} PDB:
2afa_A 2rgk_A*
Length = 421
Score = 28.2 bits (62), Expect = 3.2
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 191 EVIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYVTYAWG 232
E + + + L+ +T D +Y EW Y + + + Y G
Sbjct: 320 EAMGTAYALYTLTDDSQYEEW---YQKWWDYCIKYLMDYENG 358
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A
{Anabaena SP}
Length = 388
Score = 28.3 bits (62), Expect = 3.4
Identities = 31/235 (13%), Positives = 63/235 (26%), Gaps = 26/235 (11%)
Query: 16 FIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKN-------- 67
A +G+ +D A+ + +L P G Y G
Sbjct: 120 AAMAFSQYALASGEEWAKDVAMQAYNNVLRRKDNPKG---KYTKTYPGTRPMKALAVPMI 176
Query: 68 YAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKP-NGLYPNYLN 126
A + L TL ++ + ++ + +N
Sbjct: 177 LANLTLEMEWLLPQETLENVLAATVQEVMGDFLDQEQGLMYENVAPDGSHIDCFEGRLIN 236
Query: 127 PKTGHWGQS----HISMGALGDSFYEYLLKAWIQSNKE---DTEGPESFKFTDTLEAKAY 179
P GH ++ DS + + D E + F D
Sbjct: 237 P--GHGIEAMWFIMDIARRKNDSKTINQAVDVVLNILNFAWDNEYGGLYYFMDAAGHPPQ 294
Query: 180 RSQDKYYILRP--EVIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYVTYAWG 232
+ + + E + + +R+T W Y +M ++W ++ +G
Sbjct: 295 QLEWDQKLWWVHLESLVALAMGYRLTGRDACWAW---YQKMHDYSWQHFADPEYG 346
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 3.7
Identities = 6/46 (13%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 151 LKAWIQSNKEDTE--GPESFKFTDTLEAKAYRSQDKYYILRPEVIE 194
++ W + ++ + S KA + +++ + E +E
Sbjct: 87 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding,
hydrolase; 3.00A {Sphingomonas}
Length = 424
Score = 28.0 bits (63), Expect = 3.7
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 56 ALINVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREK-VEKIRSVI 111
A + + AS S +LS + L D+ +P + +E+ R+
Sbjct: 79 ARLGGGAEADR----ASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARA 131
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH
6-helix barrel, beta barrel, hydrolase; 1.60A
{Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2
PDB: 1ga2_A* 1k72_A* 1kfg_A*
Length = 614
Score = 27.9 bits (62), Expect = 4.5
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 176 AKAYRSQD------KYYI---LRPEVIESYFYLWRVTKDPKYREWGWDYVQMM-KHAWDN 225
A +S YY ++ + +L+ T D Y + YV K +
Sbjct: 189 ADKAKSDAGYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESYVPNWGKEQQTD 248
Query: 226 YVTYAWG 232
+ Y WG
Sbjct: 249 IIAYKWG 255
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A
{Sus scrofa} SCOP: a.102.1.3
Length = 402
Score = 27.8 bits (61), Expect = 4.9
Identities = 27/245 (11%), Positives = 67/245 (27%), Gaps = 45/245 (18%)
Query: 17 IGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSAS 76
A+ L+ T + Y+ +AV + D+++ + P L A AS S +
Sbjct: 128 TMAMNELWRVTAEARYQSEAVDMMDQIVHWVRED---PSGLGR----PQLPGAVASESMA 180
Query: 77 ILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSH 136
+ + L + + + ++ + + +
Sbjct: 181 VP-----MMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEE 235
Query: 137 ISMGALGDSFY---------------------EYLLKA------WIQSNKEDTEGPESFK 169
+ G LG + + D + F
Sbjct: 236 L-SGCLGRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFY 294
Query: 170 FTDTLEAKAYRSQDKYYILRP--EVIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYV 227
F D + + + P E + ++ + + DP + Q+ ++ + +
Sbjct: 295 FQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRL---FYQVAEYTFRQFR 351
Query: 228 TYAWG 232
+G
Sbjct: 352 DPEYG 356
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex;
HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Length = 1642
Score = 27.8 bits (60), Expect = 5.9
Identities = 14/100 (14%), Positives = 26/100 (26%)
Query: 88 FVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFY 147
VY+++ G+P V +G LN GD
Sbjct: 363 TVYVTNPDGSPAAHVPVVSEAFHSMGTTLSDGTAKLILNIPLNAQSLPITVRTNHGDLPR 422
Query: 148 EYLLKAWIQSNKEDTEGPESFKFTDTLEAKAYRSQDKYYI 187
E + + T+G + + + D +
Sbjct: 423 ERQATKSMTAIAYQTQGGSGNYLHVAITSTEIKPGDNLPV 462
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation;
1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Length = 543
Score = 27.4 bits (60), Expect = 6.1
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 3 QKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIP----HALI 58
++ LS F + + L +GDP Y+ +A I ++ P+G+ H +
Sbjct: 50 RRAVLSNFSAQQNLMRVMSGLSQLSGDPRYQKRAEDIVRYHFQNYQDPSGLLYWGGHRFV 109
Query: 59 NVYTGDS 65
++ T
Sbjct: 110 DLKTLQP 116
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 26.6 bits (58), Expect = 8.1
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 27/107 (25%)
Query: 140 GALGDSF---YEYLLKAWIQSNKEDTEGPESFKFTDTLEAKAYRSQDKYYIL---RP-EV 192
G++G + Y +K + + + P + LE + + K +++ P E
Sbjct: 114 GSVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFEN 173
Query: 193 I-------------ESYFYLWRVTKDPKYREWG-WD------YVQMM 219
I + D ++ WD YVQ
Sbjct: 174 IAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFF 220
>3kk7_A Putative cell invasion protein with MAC/perforin; STR genomics,
joint center for structural genomics, JCSG; 2.46A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 541
Score = 27.2 bits (59), Expect = 8.5
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 4/127 (3%)
Query: 93 DVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYL-L 151
V + + +++K YP+Y+NPK ++ + D +
Sbjct: 61 AVENGTSIIGDFANAKYPVVNMKKLLERYPSYINPKELRTTETKALSYSDFDRLEKNKTF 120
Query: 152 KAWIQSNKEDTEGPESFKFTDTLEA---KAYRSQDKYYILRPEVIESYFYLWRVTKDPKY 208
++S GP F T++ +K + L T
Sbjct: 121 TKTVKSGFSLNLGPFKFGRQKTIKETFVHNTDDSEKVVHGELSIEVVNGMLNLQTAPSAL 180
Query: 209 REWGWDY 215
R+ DY
Sbjct: 181 RKIAADY 187
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway,
EPSP synthase, structural genomics; HET: S3P; 1.15A
{Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A*
2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Length = 450
Score = 26.8 bits (60), Expect = 8.9
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 4/23 (17%)
Query: 12 TTIRFIGAILTL----YSFTGDP 30
T +RF+ + L +F GD
Sbjct: 97 TVLRFVPPLAALGSVPVTFDGDQ 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.416
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,736,529
Number of extensions: 282938
Number of successful extensions: 647
Number of sequences better than 10.0: 1
Number of HSP's gapped: 607
Number of HSP's successfully gapped: 77
Length of query: 297
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 204
Effective length of database: 4,105,140
Effective search space: 837448560
Effective search space used: 837448560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.2 bits)