RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7224
(297 letters)
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 467
Score = 177 bits (449), Expect = 8e-53
Identities = 96/200 (48%), Positives = 140/200 (70%), Gaps = 7/200 (3%)
Query: 2 KQKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVY 61
E+SVFE IRF+G +L+ Y +G+ ++R KAV + K+LPAF TP+GIP AL+N+
Sbjct: 96 NVNAEVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAFHTPSGIPWALLNMK 155
Query: 62 TGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLY 121
+G +N+ WASG +SIL+E GTLHLEF++LS ++G+P++ EKV KIR+V++ ++KP GLY
Sbjct: 156 SGIGRNWPWASGGSSILAEFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLDKPEGLY 215
Query: 122 PNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESFKFTDTLEAKAYRS 181
PNYLNP +G WGQ H+S+G LGDSFYEYLLKAW+ S+K D E + + A ++
Sbjct: 216 PNYLNPSSGQWGQHHVSVGGLGDSFYEYLLKAWLMSDKTDLEAKKMYF-------DAVQA 268
Query: 182 QDKYYILRPEVIESYFYLWR 201
+ + I + +Y W+
Sbjct: 269 IETHLIRKSSGGLTYIAEWK 288
Score = 102 bits (255), Expect = 3e-25
Identities = 38/73 (52%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 216 VQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYE 275
+MM HAW+NY YAWG NELKP+S+ GHS S+FG+ G TI+D LDTL+IMG+ E++
Sbjct: 25 KEMMTHAWNNYKRYAWGLNELKPISKEGHSSSLFGNI-KGATIVDALDTLFIMGMKTEFQ 83
Query: 276 DGKKWVAESLTLD 288
+ K W+ + L +
Sbjct: 84 EAKSWIKKYLDFN 96
Score = 80.8 bits (199), Expect = 8e-18
Identities = 63/225 (28%), Positives = 94/225 (41%), Gaps = 24/225 (10%)
Query: 21 LTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGD--SKNYAWASGSASIL 78
+ L +GDP++ +K + I + K P G+ +N +G + + S
Sbjct: 183 MHLSHLSGDPVFAEKVMKIRTVLNKLDK-PEGLYPNYLNPSSGQWGQHHVSVGGLGDSFY 241
Query: 79 SELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPN-----YLNPKTGHWG 133
L L +Y + V+ I + + Y L K GH
Sbjct: 242 EYLLKAWLMSDKTDLEAKK-MYFDAVQAIETHLIRKSSGGLTYIAEWKGGLLEHKMGHLT 300
Query: 134 QSHISMGALG-DSFYEYLLKAWIQSNKEDTE-------------GPESFKFTDTLEAKAY 179
M ALG D E + +++ E GPE+F+F +EA A
Sbjct: 301 CFAGGMFALGADGAPEARAQHYLELGAEIARTCHESYNRTYVKLGPEAFRFDGGVEAIAT 360
Query: 180 RSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQ-MMKHAW 223
R +KYYILRPEVIE+Y Y+WR+T DPKYR W W+ V+ + H
Sbjct: 361 RQNEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEAVEALESHCR 405
Score = 33.1 bits (75), Expect = 0.041
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 15 RFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSK 66
I + ++ T DP YR A + + + G L +VY
Sbjct: 372 EVIETYMYMWRLTHDPKYRTWAWEAVEALESHCRVNGG-YSGLRDVYIARES 422
Score = 25.7 bits (56), Expect = 8.7
Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 7/125 (5%)
Query: 16 FIGAILTLYSFTGDPMYRDKAVHIADKMLPA-----FKTPTGIPHALINVYTGDSKNYAW 70
F G + L + + + ++ +T + G
Sbjct: 302 FAGGMFALGADGAPEARAQHYLELGAEIARTCHESYNRTYVKLGPEAFRFDGGVEAIATR 361
Query: 71 ASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTG 130
+ IL + ++Y+ +T +P YR + + S + NG Y +
Sbjct: 362 QNEKYYILRP--EVIETYMYMWRLTHDPKYRTWAWEAVEALESHCRVNGGYSGLRDVYIA 419
Query: 131 HWGQS 135
Sbjct: 420 RESYD 424
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 453
Score = 151 bits (383), Expect = 3e-43
Identities = 62/193 (32%), Positives = 114/193 (59%), Gaps = 11/193 (5%)
Query: 1 MKQKIELSVFETTIRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINV 60
++ +++++FE+TIR +G +L+ Y +GD ++ KA ++++PAF+TP+ IP++ +N+
Sbjct: 76 FEKDVDVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAFRTPSKIPYSDVNI 135
Query: 61 YTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIE-KPNG 119
TG + W S S ++E+ ++ LEF LS +TG+ ++E VEK+ I + K +G
Sbjct: 136 GTGVAHPPRWTSD--STVAEVTSIQLEFRELSRLTGDKKFQEAVEKVTQHIHGLSGKKDG 193
Query: 120 LYPNYLNPKTGHWGQSHI-SMGALGDSFYEYLLKAWIQSNKEDTEGPESFKFTDTLEAKA 178
L P ++N +G + + ++GA DS+YEYLLK WIQ K++T+ E + +A
Sbjct: 194 LVPMFINTHSGLFTHLGVFTLGARADSYYEYLLKQWIQGGKQETQLLEDYV-------EA 246
Query: 179 YRSQDKYYILRPE 191
+ + E
Sbjct: 247 IEGVRTHLLRHSE 259
Score = 91.6 bits (227), Expect = 2e-21
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Query: 216 VQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYE 275
+ + HAW Y +AWG +ELKP+SR FG LG+T+ID LDT++I+GL E+E
Sbjct: 10 IDVFLHAWKGYRKFAWGHDELKPVSRSFSE--WFG---LGLTLIDALDTMWILGLRKEFE 64
Query: 276 DGKKWVAESLTLD 288
+ +KWV++ L +
Sbjct: 65 EARKWVSKKLHFE 77
Score = 88.1 bits (218), Expect = 2e-20
Identities = 51/242 (21%), Positives = 87/242 (35%), Gaps = 28/242 (11%)
Query: 19 AILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASIL 78
L TGD +++ + + G+ IN ++G + + A
Sbjct: 160 EFRELSRLTGDKKFQEAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARAD 219
Query: 79 SELGTLHLEFVYLSDVTGNP--IYREKVEKIRSVISSIEKPNGLY------PNYLNPKTG 130
S L +++ Y E +E +R+ + +P+ L + K
Sbjct: 220 SYYEYLLKQWIQGGKQETQLLEDYVEAIEGVRTHLLRHSEPSKLTFVGELAHGRFSAKMD 279
Query: 131 HWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEG-------------PESFKFT----DT 173
H ALG Y L + ++ +E E PE F
Sbjct: 280 HLVCFLPGTLALG--VYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHFNLYPQPG 337
Query: 174 LEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQ-MMKHAWDNYVTYAWG 232
+ D++ +LRPE +ES FYL+RVT D KY++WGW+ +Q + Y+
Sbjct: 338 RRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYSSI 397
Query: 233 KN 234
N
Sbjct: 398 NN 399
Score = 32.6 bits (74), Expect = 0.045
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 16 FIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDS 65
+ ++ LY TGD Y+D I + P+G ++ NV
Sbjct: 356 TVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYSSINNVQDPQK 405
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 511
Score = 147 bits (373), Expect = 1e-41
Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 31/242 (12%)
Query: 2 KQKIELSVFETTIRFIGAILTLYSFT------GDPMYRDKAVHIADKMLPAFK-TPTGIP 54
E++VFETTIR +G +L+ Y + +Y +KA+ + D++ AF T TGIP
Sbjct: 90 DIDAEVNVFETTIRMLGGLLSAYHLSDVLEVGNKTVYLNKAIDLGDRLALAFLSTQTGIP 149
Query: 55 HALINVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVI--- 111
++ IN+++G + G AS +E TL +EF YL+ +TGN Y E VE++ +
Sbjct: 150 YSSINLHSGQAVKNHAD-GGASSTAEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKN 208
Query: 112 -SSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESFKF 170
+ +GL P Y P TG +G S I G+ GDSFYEYLLK ++ +++
Sbjct: 209 NDLLNTYDGLVPIYTFPDTGKFGASTIRFGSRGDSFYEYLLKQYLLTHETLYY------- 261
Query: 171 TDTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYVTYA 230
L K+ K+ + + + S +Y+ + + + D+ V +
Sbjct: 262 --DLYRKSMEGMKKHLLAQSK-PSSLWYIGEREQGLHGQ---------LSPKMDHLVCFM 309
Query: 231 WG 232
G
Sbjct: 310 GG 311
Score = 87.5 bits (216), Expect = 6e-20
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 217 QMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMG------- 269
M +W +Y + WG + P+ H+ G+ LG I+D +DTL +M
Sbjct: 11 SMFLESWRDYSKHGWGYDVYGPIEHTSHN-MPRGNQPLGWIIVDSVDTLMLMYNSSTLYK 69
Query: 270 --LTDEYEDGKKWVAESLTLD 288
E + + W+ + L D
Sbjct: 70 SEFEAEIQRSEHWINDVLDFD 90
Score = 74.0 bits (181), Expect = 2e-15
Identities = 39/245 (15%), Positives = 85/245 (34%), Gaps = 49/245 (20%)
Query: 26 FTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELGTLH 85
TG+ Y + + + L L+ +YT + + + S + +
Sbjct: 188 LTGNRTYWELVERVYEP-LYKNNDLLNTYDGLVPIYT-FPDTGKFGASTIRFGSRGDSFY 245
Query: 86 L----EFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYP---------NYLNPKTGHW 132
+++ + +YR+ +E ++ + + KP+ L+ L+PK H
Sbjct: 246 EYLLKQYLLTHETLYYDLYRKSMEGMKKHLLAQSKPSSLWYIGEREQGLHGQLSPKMDHL 305
Query: 133 GQSHISMGALG--DSFYEYLLKAWIQSNKEDTE--------------------GPESFKF 170
+ A G + + + +K D + PE F
Sbjct: 306 VCFMGGLLASGSTEGLSIHEARRRPFFSKSDWDLAKGITDTCYQMYKQSSSGLAPEIVVF 365
Query: 171 TD-----------TLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQ-M 218
D ++ + D++ + RPE +ES +++ ++ D KYREWG +
Sbjct: 366 NDGNIKQDGWWRSSVGDFFVKPLDRHNLQRPETVESIMFMYHLSHDHKYREWGAEIATSF 425
Query: 219 MKHAW 223
++
Sbjct: 426 FENTC 430
Score = 32.4 bits (73), Expect = 0.057
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
Query: 15 RFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPH-----ALINVYTGDSK 66
+ +I+ +Y + D YR+ IA P +L + T +K
Sbjct: 397 ETVESIMFMYHLSHDHKYREWGAEIATSFFENTCVDCNDPKLRRFTSLSDCITLPTK 453
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase,
catalytic domain {Fungus (Penicillium citrinum) [TaxId:
5077]}
Length = 475
Score = 142 bits (358), Expect = 1e-39
Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 29/229 (12%)
Query: 2 KQKIELSVFETTIRFIGAILTLYSFTGDP------------MYRDKAVHIADKMLPAFKT 49
K +S+FETTIR++ +L+ Y P D++ ++AD + AF T
Sbjct: 78 KTSDTVSLFETTIRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQSRNLADVLKFAFDT 137
Query: 50 PTGIPHALINVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRS 109
P+G+P+ IN+ ++ + + L+ GTL LE+ LSD+TG+ Y + +K S
Sbjct: 138 PSGVPYNNINI-----TSHGNDGATTNGLAVTGTLVLEWTRLSDLTGDEEYAKLSQKAES 192
Query: 110 VI-----SSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEG 164
+ SS E GL + +N G + S +S DSFYEYL+K ++ K
Sbjct: 193 YLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNGGDDSFYEYLIKMYVYDPKRFETY 252
Query: 165 PESFKFTDTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGW 213
+ + A S K+ P+ +L +
Sbjct: 253 KDRWV-------LAAESTIKHLKSHPKSRPDLTFLSSYSNRNYDLSSQH 294
Score = 88.6 bits (219), Expect = 2e-20
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 217 QMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYED 276
+ +HAW+ Y+ YA+ +EL P+S GH+ S G G + +D L T IMG D
Sbjct: 11 EAFQHAWNGYMKYAFPHDELTPVS-NGHADSRNG---WGASAVDALSTAVIMGKADVVNA 66
Query: 277 GKKWVAESLTLDDK 290
+ VA+
Sbjct: 67 ILEHVADIDFSKTS 80
Score = 75.9 bits (186), Expect = 5e-16
Identities = 40/243 (16%), Positives = 73/243 (30%), Gaps = 35/243 (14%)
Query: 15 RFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHAL----INVYTGD--SKNY 68
+ L TGD Y + +L + + L IN+ G
Sbjct: 166 TLVLEWTRLSDLTGDEEYAKLSQKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRV 225
Query: 69 AWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNY---- 124
+W G S L +++ + + + E + S K
Sbjct: 226 SWNGGDDSFYEYLIKMYVYDPKRFETYKD-RWVLAAESTIKHLKSHPKSRPDLTFLSSYS 284
Query: 125 ---LNPKTGHWG---QSHISMGALGDSFYEYLLKA--------WIQSNKEDTEGPESFKF 170
+ + H +G +++ ++ GP+S+ +
Sbjct: 285 NRNYDLSSQHLTCFDGGSFLLGGTVLDRQDFIDFGLELVDGCEATYNSTLTKIGPDSWGW 344
Query: 171 T---------DTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDYVQ-MMK 220
+ E + Y+LRPEVIES++Y RVT YR+W W+ +
Sbjct: 345 DPKKVPSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFVAINS 404
Query: 221 HAW 223
Sbjct: 405 TCR 407
Score = 32.0 bits (72), Expect = 0.096
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 15 RFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTG 52
I + + TG +YRD + + +T +G
Sbjct: 374 EVIESFYYAHRVTGKEIYRDWVWNAFVAINSTCRTDSG 411
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Trichoderma reesei [TaxId: 51453]}
Length = 488
Score = 142 bits (359), Expect = 1e-39
Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 27/228 (11%)
Query: 2 KQKIELSVFETTIRFIGAILTLYSFTGDP------------MYRDKAVHIADKMLPAFKT 49
SVFET IR++G +L+ Y P +A +A+ + AF T
Sbjct: 85 VANQGSSVFETNIRYLGGLLSAYDLLRGPFSSLATNQTLVNSLLRQAQTLANGLKVAFTT 144
Query: 50 PTGIPHALINVYTGDSKNYAWASGSASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRS 109
P+G+P + ++ S++ ++E+G+L LE+ LSD+TGNP Y + +K S
Sbjct: 145 PSGVPDPTVFFNPTVRRS----GASSNNVAEIGSLVLEWTRLSDLTGNPQYAQLAQKGES 200
Query: 110 VI----SSIEKPNGLYPNYLNPKTGHWGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGP 165
+ S E GL +++ G + S S L DSFYEYL+K ++
Sbjct: 201 YLLNPKGSPEAWPGLIGTFVSTSNGTFQDSSGSWSGLMDSFYEYLIKMYLYDPVAFAHYK 260
Query: 166 ESFKFTDTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGW 213
+ + S + P + +L G
Sbjct: 261 DRWV-------LGADSTIGHLGSHPSTRKDLTFLSSYNGQSTSPNSGH 301
Score = 89.7 bits (222), Expect = 9e-21
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 217 QMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMGLTDEYED 276
+ +W+ Y +A+ ++L P+S G + IDGLDT +MG D
Sbjct: 15 AAFQTSWNAYHHFAFPHDDLHPVSNSFDDE--RNG--WGSSAIDGLDTAILMGDADIVNT 70
Query: 277 GKKWVAE 283
++V +
Sbjct: 71 ILQYVPQ 77
Score = 82.8 bits (204), Expect = 2e-18
Identities = 47/249 (18%), Positives = 83/249 (33%), Gaps = 44/249 (17%)
Query: 16 FIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSA 75
+ L TG+P Y A +L +P P LI + + N + S
Sbjct: 175 LVLEWTRLSDLTGNPQYAQLAQKGESYLLNPKGSPEAWP-GLIGTFV-STSNGTFQDSSG 232
Query: 76 SILSELGTLHLEFV--YLSDVTGNPIYREK-VEKIRSVISSIEKPNGLYPNYLNPKTGHW 132
S + + + + YL D Y+++ V S I + + + +
Sbjct: 233 SWSGLMDSFYEYLIKMYLYDPVAFAHYKDRWVLGADSTIGHLGSHPSTRKDLTFLSSYNG 292
Query: 133 GQSHISMGALGDSFY--------------EYLLKA--------WIQSNKEDTEGPESFKF 170
+ + G L SF +Y+ + GPE F +
Sbjct: 293 QSTSPNSGHL-ASFGGGNFILGGILLNEQKYIDFGIKLASSYFGTYTQTASGIGPEGFAW 351
Query: 171 TDT---------------LEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWGWDY 215
D+ + + YYILRPE +ES +Y +RVT D K+++ W+
Sbjct: 352 VDSVTGAGGSPPSSQSGFYSSAGFWVTAPYYILRPETLESLYYAYRVTGDSKWQDLAWEA 411
Query: 216 VQ-MMKHAW 223
+ +
Sbjct: 412 LSAIEDACR 420
Score = 31.2 bits (70), Expect = 0.14
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 15 RFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTG 52
+ ++ Y TGD ++D A + A + +
Sbjct: 387 ETLESLYYAYRVTGDSKWQDLAWEALSAIEDACRAGSA 424
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase
{Bacillus sp. GL1 [TaxId: 84635]}
Length = 377
Score = 51.6 bits (123), Expect = 3e-08
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 11/141 (7%)
Query: 23 LYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELG 82
+ D R A+ AD ++ ++ GI A ++ ++
Sbjct: 100 QWIVEKDESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDCLLNLPL--- 156
Query: 83 TLHLEFVYLSDVTGNPIYREKVEK--IRSVISSIEKPNGLYPN-YLNPKTGHWGQSHISM 139
++ + TG+P YR E ++S + + Y Y +P+ G+ +
Sbjct: 157 -----LLWAGEQTGDPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQ 211
Query: 140 GALGDSFYEYLLKAWIQSNKE 160
G S + I
Sbjct: 212 GNTDGSTWTRGQAWGIYGFAL 232
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 402
Score = 32.1 bits (72), Expect = 0.075
Identities = 20/221 (9%), Positives = 63/221 (28%), Gaps = 19/221 (8%)
Query: 23 LYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELG 82
L+ T + Y+ +AV + D+++ + S++ A ++ +LG
Sbjct: 134 LWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGRPQLPGAVASESMAVPMMLLCLVEQLG 193
Query: 83 T---LHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSHISM 139
+ V++ + +G + + + G + +
Sbjct: 194 EEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCLGRHQNPGHALEAG 253
Query: 140 GAL--------GDSFYEYLLKAWIQSNKEDTEGPESFKFTDTLEAKA-----YRSQDKYY 186
L +++ ++ + +A K +
Sbjct: 254 WFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLW 313
Query: 187 ILRPEVIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYV 227
E + ++ + + DP + Q+ ++ + +
Sbjct: 314 WPHSEAMIAFLMGYSESGDPALLRL---FYQVAEYTFRQFR 351
Score = 28.2 bits (62), Expect = 1.2
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 17 IGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTP 50
+ A L YS +GDP +A+ F+ P
Sbjct: 320 MIAFLMGYSESGDPALLRLFYQVAEYTFRQFRDP 353
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis
[TaxId: 1423]}
Length = 363
Score = 30.9 bits (69), Expect = 0.20
Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 22/117 (18%)
Query: 16 FIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSA 75
F+ +L L+ TG+ Y + A AD ++ L + G
Sbjct: 36 FLCGVLRLWEATGEKRYFEYAKAYADLLIDDNGNLLFRRDELDAIQAG------------ 83
Query: 76 SILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHW 132
L L + T + Y + +++RS+ ++ + + + +
Sbjct: 84 ----------LILFPLYEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDGYPYQM 130
Score = 25.8 bits (56), Expect = 7.1
Identities = 18/146 (12%), Positives = 29/146 (19%), Gaps = 9/146 (6%)
Query: 82 GTLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSHISMGA 141
G + L + TG Y E + I+ L G +
Sbjct: 34 GVFLCGVLRLWEATGEKRYFEYAKAY--ADLLIDDNGNLLFRRDELDAIQAGLILFPLYE 91
Query: 142 L-GDSFYEYLLKAWIQSNKEDTEGPESFKFTDTLEAKAYRSQDKYYILRPEVIESYFYLW 200
D Y K E + Y
Sbjct: 92 QTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDGYPYQMWLDGLYMGGPF-----ALKYA 146
Query: 201 RVTKDPKYREWGWD-YVQMMKHAWDN 225
+ ++ + + M KH D
Sbjct: 147 NLKQETELFDQVVLQESLMRKHTKDA 172
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella
typhimurium [TaxId: 90371]}
Length = 411
Score = 29.3 bits (65), Expect = 0.64
Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 7/116 (6%)
Query: 14 IRFIGAILTLYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASG 73
+ + A L T + A + + P G VY+ D
Sbjct: 255 MLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGF---VYSVDWDGKPIVR- 310
Query: 74 SASILSELGTLHLEFVYLSDVTGNPIYREKVEKIRSVISS--IEKPNGLYPNYLNP 127
+ + L +T + Y E +K ++ NG + L+
Sbjct: 311 -ERVRWPIVEAMGTAYALYTLTDDSQYEEWYQKWWDYCIKYLMDYENGSWWQELDA 365
Score = 28.9 bits (64), Expect = 0.66
Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 153 AWIQSNKEDTEGPESFKFTDTLEAKAYRSQDKYYILRPEVIESYFYLWRVTKDPKYREWG 212
+ +G + F ++ + K ++ E + + + L+ +T D +Y EW
Sbjct: 282 HATIRDAWAPDGADGFVYSVDWDGKPIVR-ERVRWPIVEAMGTAYALYTLTDDSQYEEW- 339
Query: 213 WDYVQMMKHAWDNYVTYAWG 232
Y + + + Y G
Sbjct: 340 --YQKWWDYCIKYLMDYENG 357
>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA
{Escherichia coli [TaxId: 562]}
Length = 511
Score = 28.9 bits (64), Expect = 0.91
Identities = 15/104 (14%), Positives = 22/104 (21%), Gaps = 8/104 (7%)
Query: 141 ALGDSFYEYLLKA-------WIQSN-KEDTEGPESFKFTDTLEAKAYRSQDKYYILRPEV 192
GD+ + L W+ E R D RPE
Sbjct: 185 HEGDAALKQYLPQMQKEYAYWMDGVENLQAGQQEKRVVKLQDGTLLNRYWDDRDTPRPES 244
Query: 193 IESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYVTYAWGKNEL 236
+ + E D WD + +L
Sbjct: 245 WVEDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDNPQQL 288
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase)
{Cellvibrio cellulosa [TaxId: 155077]}
Length = 324
Score = 26.8 bits (59), Expect = 3.1
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 27/128 (21%)
Query: 23 LYSFTGDPMYR-------DKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWAS-GS 74
+ + G+P + AD +L +++ G G KN + S G+
Sbjct: 5 MLTLDGNPAANWLNNARTKWSASRADVVL-SYQQNNG----------GWPKNLDYNSVGN 53
Query: 75 ASILSELGTL-----HLEFVYLSDV---TGNPIYREKVEKIRSVISSIEKPNGLYPNYLN 126
+E GT+ E V+L++V GN YR+ V K + + + + G P +
Sbjct: 54 GGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGALPQFYP 113
Query: 127 PKTGHWGQ 134
K G+
Sbjct: 114 LKGGYSDH 121
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase
CbhA {Clostridium thermocellum [TaxId: 1515]}
Length = 511
Score = 27.1 bits (59), Expect = 3.2
Identities = 14/114 (12%), Positives = 25/114 (21%), Gaps = 7/114 (6%)
Query: 23 LYSFTGDPMYRDKAVHIADKMLPAFKTPTGIPHALINVYTGDSKNYAWASGSASILSELG 82
LY TG Y++ ++ + K + + G +I
Sbjct: 266 LYVTTGKDEYKNYLMNSPHYLEMPAKMGENGGANGEDNGLWGCFTWGTTQGLGTITL--- 322
Query: 83 TLHLEFVYLSDVTGNPIYREKVEKIRSVISSIEKPNGLYPNYLNPKTGHWGQSH 136
T R + K + G Y + G
Sbjct: 323 ---ALVENGLPATDIQKARNNIAKAADRWLENIEEQG-YRLPIKQAEDERGGYP 372
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium
cellulolyticum [TaxId: 1521]}
Length = 431
Score = 26.1 bits (57), Expect = 6.1
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 191 EVIESYFYLWRVTKDPKYREWGWDYV----QMMKHAWDNYVTYAWG 232
++ + +L+ T D Y ++ M ++ + T W
Sbjct: 212 DLAWAATWLYTATNDSTYITDAEQFITLGNTMNENKMQDKWTMCWD 257
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4,
N-terminal domain {Clostridium cellulolyticum, atcc
35319 [TaxId: 1521]}
Length = 454
Score = 25.8 bits (56), Expect = 6.8
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 191 EVIESYFYLWRVTKDPKYREWGWDYVQ-MMKHAWDNYVTYAWG 232
++ + +L+ T D Y + YV K + + Y WG
Sbjct: 211 DLSWAAVWLYLATNDSTYLDKAESYVPNWGKEQQTDIIAYKWG 253
>d1y4ja1 d.169.1.7 (A:28-294) Sulfatase modifying factor 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 25.9 bits (55), Expect = 6.8
Identities = 18/166 (10%), Positives = 43/166 (25%), Gaps = 1/166 (0%)
Query: 132 WGQSHISMGALGDSFYEYLLKAWIQSNKEDTEGPESFKFTDTLEAKAYRSQDKYYILRPE 191
+G S + + D + ++ + + +
Sbjct: 63 FGWSFVFEDFVSDELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLHVSW 122
Query: 192 VIESYFYLWRVTKDPKYREWGWDYVQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGS 251
+ WR + P EW + + + N + G
Sbjct: 123 NDARAYCAWRGKRLPTEEEWEF-AARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAED 181
Query: 252 AELGMTIIDGLDTLYIMGLTDEYEDGKKWVAESLTLDDKTHKVVMG 297
G++ ++ GL D + +W A ++ +V+ G
Sbjct: 182 GFHGVSPVNAFPAQNNYGLYDLLGNVWEWTASPYQAAEQDMRVLRG 227
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC
{Lactococcus lactis [TaxId: 1358]}
Length = 409
Score = 25.6 bits (55), Expect = 7.9
Identities = 4/31 (12%), Positives = 10/31 (32%)
Query: 196 YFYLWRVTKDPKYREWGWDYVQMMKHAWDNY 226
L Y++ +Y++ + Y
Sbjct: 44 LAELKNKDNSKIYQKKIDNYIEYIVSKLSTY 74
>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus
[TaxId: 63363]}
Length = 184
Score = 25.1 bits (54), Expect = 10.0
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 210 EWGWDYVQMMKHAWDNYVTYAWGKNELKPLSRRGHSGSIFGSAELGMTIIDGLDTLYIMG 269
MK +D+ + WG+ + K SG G E + + L L G
Sbjct: 59 TNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSGGWGGGNE--VACMSILTMLMNFG 116
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.416
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,182,126
Number of extensions: 56199
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 47
Length of query: 297
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,240,546
Effective search space: 262995752
Effective search space used: 262995752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)