BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7226
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 112/245 (45%), Gaps = 53/245 (21%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS--------- 78
F FD FGP +++ V+ PLI + NG N T+ AYGQTG GKT+T+
Sbjct: 69 FTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKS 128
Query: 79 --------AMIMKTLQHVMQRCNKDDV----YMSYLQLYSEKCYDLLNGNKEVTLKNWIF 126
+I + L H+ +V +SYL+LY+E+ DLL+ + T K IF
Sbjct: 129 SWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLLSTDD--TTKIRIF 186
Query: 127 NIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKM 186
+ D +G Q P + S + +L+ G E + TA T M
Sbjct: 187 D----DSTKKGSVIIQGLEEIP-------------VHSKDDVYKLLEKGKERRKTATTLM 229
Query: 187 NAQSSRSHTICTIYLG------------AMAKLHLVDLAGSEQLFSLSDNYLLR-NEARK 233
NAQSSRSHT+ +I + + KL+LVDLAGSE + + +R E
Sbjct: 230 NAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVN 289
Query: 234 INLSL 238
IN SL
Sbjct: 290 INQSL 294
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 60/252 (23%)
Query: 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYT-------- 76
+ + FD +FG + ++ V+ P+++ + G NAT+ AYGQTG GKT+T
Sbjct: 63 RKTYTFDMVFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPN 122
Query: 77 ---------VSAMIMKTLQHVMQRCNKD----DVYMSYLQLYSEKCYDLLNGNKEVTLKN 123
++ +I +TL + ++ + V +S L++Y+E+ +DLLN + +V+ +
Sbjct: 123 EEYCWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 182
Query: 124 WIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSL-----NSAVQLIVTGNEN 178
+F+ P R+ + +K L+ + + Q++ G
Sbjct: 183 QMFDDP----------------------RNKRGVIIKGLEEITVHNKDEVYQILEKGAAK 220
Query: 179 KVTAVTKMNAQSSRSHTICTIY------------LGAMAKLHLVDLAGSEQLFSLSDNYL 226
+ TA T MNA SSRSH++ ++ L + KL+LVDLAGSE +
Sbjct: 221 RTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDK 280
Query: 227 LRNEARKINLSL 238
EA IN SL
Sbjct: 281 RAREAGNINQSL 292
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 106/242 (43%), Gaps = 47/242 (19%)
Query: 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAM----- 80
+ F FD ++ N ++ E PL++ + G N T+ AYGQTG GKTYT+ +
Sbjct: 68 KTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPE 127
Query: 81 ----IMKTLQHVMQRCNKDD-----VYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQS 131
I + H+ ++ V SYL++Y E+ DLL+ ++
Sbjct: 128 KRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQT------------- 174
Query: 132 DQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSS 191
+R++ P TG + +S K + + + + GN+N+ T MN SS
Sbjct: 175 -KRLELKERPDTGVYV----KDLSSFVTKSVKEIEHVMNV---GNQNRSVGATNMNEHSS 226
Query: 192 RSHTICTIYLGA------------MAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLH 239
RSH I I + + KL+LVDLAGSE+ EA KINLSL
Sbjct: 227 RSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLS 286
Query: 240 YL 241
L
Sbjct: 287 AL 288
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 46/240 (19%)
Query: 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTL 85
+V++FD +F PN S E ++ E ++ + G N T+ AYGQT GKT+T+ +I ++
Sbjct: 51 KVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSV 110
Query: 86 -QHVMQRCNKD--------------DVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQ 130
Q ++ R D + +SY ++Y +K DLL+ +K V L ++ +
Sbjct: 111 KQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSK-VNL-----SVHE 164
Query: 131 SDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQS 190
RV P G T + + S ++I G N+ AVT MN S
Sbjct: 165 DKNRV---------PYVKG-------ATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHS 208
Query: 191 SRSHTICTIYLGA---------MAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYL 241
SRSH++ I + KL+LVDLAGSE++ + +EA+ IN SL L
Sbjct: 209 SRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSAL 268
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 60/252 (23%)
Query: 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYT-------- 76
+ + FD +FG + ++ V+ P+++ + G N T+ AYGQTG GKT+T
Sbjct: 65 RKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPN 124
Query: 77 ---------VSAMIMKTLQHVMQRCNKD----DVYMSYLQLYSEKCYDLLNGNKEVTLKN 123
++ +I +TL + ++ + V +S L++Y+E+ +DLLN + +V+ +
Sbjct: 125 EEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 184
Query: 124 WIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSL-----NSAVQLIVTGNEN 178
+F+ P R+ + +K L+ + + Q++ G
Sbjct: 185 QMFDDP----------------------RNKRGVIIKGLEEITVHNKDEVYQILEKGAAK 222
Query: 179 KVTAVTKMNAQSSRSHTICTIY------------LGAMAKLHLVDLAGSEQLFSLSDNYL 226
+ TA T MNA SSRSH++ ++ L + KL+LVDLAGSE +
Sbjct: 223 RTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDK 282
Query: 227 LRNEARKINLSL 238
EA IN SL
Sbjct: 283 RAREAGNINQSL 294
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 60/252 (23%)
Query: 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYT-------- 76
+ + FD +FG + ++ V+ P+++ + G N T+ AYGQTG GKT+T
Sbjct: 62 RKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPN 121
Query: 77 ---------VSAMIMKTLQHVMQRCNKD----DVYMSYLQLYSEKCYDLLNGNKEVTLKN 123
++ +I +TL + ++ + V +S L++Y+E+ +DLLN + +V+ +
Sbjct: 122 EEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 181
Query: 124 WIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSL-----NSAVQLIVTGNEN 178
+F+ P R+ + +K L+ + + Q++ G
Sbjct: 182 QMFDDP----------------------RNKRGVIIKGLEEITVHNKDEVYQILEKGAAK 219
Query: 179 KVTAVTKMNAQSSRSHTICTIY------------LGAMAKLHLVDLAGSEQLFSLSDNYL 226
+ TA T MNA SSRSH++ ++ L + KL+LVDLAGSE +
Sbjct: 220 RTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDK 279
Query: 227 LRNEARKINLSL 238
EA IN SL
Sbjct: 280 RAREAGNINQSL 291
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 60/252 (23%)
Query: 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYT-------- 76
+ + FD +FG + ++ V+ P+++ + G N T+ AYGQTG GKT+T
Sbjct: 54 RKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPN 113
Query: 77 ---------VSAMIMKTLQHVMQRCNKD----DVYMSYLQLYSEKCYDLLNGNKEVTLKN 123
++ +I +TL + ++ + V +S L++Y+E+ +DLLN + +V+ +
Sbjct: 114 EEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 173
Query: 124 WIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSL-----NSAVQLIVTGNEN 178
+F+ P R+ + +K L+ + + Q++ G
Sbjct: 174 QMFDDP----------------------RNKRGVIIKGLEEITVHNKDEVYQILEKGAAK 211
Query: 179 KVTAVTKMNAQSSRSHTICTIY------------LGAMAKLHLVDLAGSEQLFSLSDNYL 226
+ TA T MNA SSRSH++ ++ L + KL+LVDLAGSE +
Sbjct: 212 RTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDK 271
Query: 227 LRNEARKINLSL 238
EA IN SL
Sbjct: 272 RAREAGNINQSL 283
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 60/252 (23%)
Query: 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYT-------- 76
+ + FD +FG + ++ V+ P+++ + G N T+ AYGQTG GKT+T
Sbjct: 63 RKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPN 122
Query: 77 ---------VSAMIMKTLQHVMQRCNKD----DVYMSYLQLYSEKCYDLLNGNKEVTLKN 123
++ +I +TL + ++ + V +S L++Y+E+ +DLLN + +V+ +
Sbjct: 123 EEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 182
Query: 124 WIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSL-----NSAVQLIVTGNEN 178
+F+ P R+ + +K L+ + + Q++ G
Sbjct: 183 QMFDDP----------------------RNKRGVIIKGLEEITVHNKDEVYQILEKGAAK 220
Query: 179 KVTAVTKMNAQSSRSHTICTIY------------LGAMAKLHLVDLAGSEQLFSLSDNYL 226
+ TA T MNA SSRSH++ ++ L + KL+LVDLAGSE +
Sbjct: 221 RTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDK 280
Query: 227 LRNEARKINLSL 238
EA IN SL
Sbjct: 281 RAREAGNINQSL 292
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 60/252 (23%)
Query: 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYT-------- 76
+ + FD +FG + ++ V+ P+++ + G N T+ AYGQTG GKT+T
Sbjct: 48 RKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPN 107
Query: 77 ---------VSAMIMKTLQHVMQRCNKD----DVYMSYLQLYSEKCYDLLNGNKEVTLKN 123
++ +I +TL + ++ + V +S L++Y+E+ +DLLN + +V+ +
Sbjct: 108 EEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 167
Query: 124 WIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSL-----NSAVQLIVTGNEN 178
+F+ P R+ + +K L+ + + Q++ G
Sbjct: 168 QMFDDP----------------------RNKRGVIIKGLEEITVHNKDEVYQILEKGAAK 205
Query: 179 KVTAVTKMNAQSSRSHTICTIY------------LGAMAKLHLVDLAGSEQLFSLSDNYL 226
+ TA T MNA SSRSH++ ++ L + KL+LVDLAGSE +
Sbjct: 206 RTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDK 265
Query: 227 LRNEARKINLSL 238
EA IN SL
Sbjct: 266 RAREAGNINQSL 277
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 60/252 (23%)
Query: 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYT-------- 76
+ + FD +FG + ++ V+ P+++ + G N T+ AYGQTG GKT+T
Sbjct: 63 RKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPN 122
Query: 77 ---------VSAMIMKTLQHVMQRCNKD----DVYMSYLQLYSEKCYDLLNGNKEVTLKN 123
++ +I +TL + ++ + V +S L++Y+E+ +DLLN + +V+ +
Sbjct: 123 EEYTWEEVPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 182
Query: 124 WIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSL-----NSAVQLIVTGNEN 178
+F+ P R+ + +K L+ + + Q++ G
Sbjct: 183 QMFDDP----------------------RNKRGVIIKGLEEITVHNKDEVYQILEKGAAK 220
Query: 179 KVTAVTKMNAQSSRSHTICTIY------------LGAMAKLHLVDLAGSEQLFSLSDNYL 226
+ TA T MNA SSRSH++ ++ L + KL+LVDLAGSE +
Sbjct: 221 RTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDK 280
Query: 227 LRNEARKINLSL 238
EA IN SL
Sbjct: 281 RAREAGNINQSL 292
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 60/252 (23%)
Query: 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYT-------- 76
+ + FD +FG + ++ V+ P+++ + G N T+ AYGQTG GKT+T
Sbjct: 63 RKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPN 122
Query: 77 ---------VSAMIMKTLQHVMQRCNKD----DVYMSYLQLYSEKCYDLLNGNKEVTLKN 123
++ +I +TL + ++ + V +S L++Y+E+ +DLLN + +V+ +
Sbjct: 123 EEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 182
Query: 124 WIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSL-----NSAVQLIVTGNEN 178
+F+ P R+ + +K L+ + + Q++ G
Sbjct: 183 QMFDDP----------------------RNKRGVIIKGLEEITVHNKDEVYQILEKGAAK 220
Query: 179 KVTAVTKMNAQSSRSHTICTIY------------LGAMAKLHLVDLAGSEQLFSLSDNYL 226
+ TA T MNA SSRSH++ ++ L + KL+LVDLAGSE +
Sbjct: 221 RTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDK 280
Query: 227 LRNEARKINLSL 238
EA IN SL
Sbjct: 281 RAREAGNINQSL 292
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 115/252 (45%), Gaps = 60/252 (23%)
Query: 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------ 78
+ + FD +FG + ++ V+ P+++ + G N T+ AYGQTG GKT+T+
Sbjct: 63 RKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPN 122
Query: 79 -----------AMIMKTLQHVMQRCNKD----DVYMSYLQLYSEKCYDLLNGNKEVTLKN 123
+I +TL + ++ + V +S L++Y+E+ +DLLN + +V+ +
Sbjct: 123 EEYTWEEDPLDGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERL 182
Query: 124 WIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSL-----NSAVQLIVTGNEN 178
+F+ P R+ + +K L+ + + Q++ G
Sbjct: 183 QMFDDP----------------------RNKRGVIIKGLEEITVHNKDEVYQILEKGAAK 220
Query: 179 KVTAVTKMNAQSSRSHTICTIY------------LGAMAKLHLVDLAGSEQLFSLSDNYL 226
+ TA T MNA SSRSH++ ++ L + KL+LVDLAGSE +
Sbjct: 221 RTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDK 280
Query: 227 LRNEARKINLSL 238
EA IN SL
Sbjct: 281 RAREAGNINQSL 292
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 107/241 (44%), Gaps = 51/241 (21%)
Query: 21 LFFDHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS-- 78
L D F FD+ F S + ++ +++PL++ + G T LAYGQTG GK+Y++
Sbjct: 56 LIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMT 115
Query: 79 ----------AMIMKTLQHVMQRC------NKD--DVYMSYLQLYSEKCYDLLNGNKEVT 120
++ + L + +R NKD VY S++++Y+EK +DLL
Sbjct: 116 PPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTP--- 172
Query: 121 LKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKV 180
++P R Q T L S ++ G N+
Sbjct: 173 ------HMPMVAARCQ-------------------RCTCLPLHSQADLHHILELGTRNRR 207
Query: 181 TAVTKMNAQSSRSHTICTIYLGAM---AKLHLVDLAGSEQLFSLSDNYLLRNEARKINLS 237
T MN+ SSRSH I TI++ + +++++VDLAGSE + + R E INL
Sbjct: 208 VRPTNMNSNSSRSHAIVTIHVKSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLG 267
Query: 238 L 238
L
Sbjct: 268 L 268
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 107/241 (44%), Gaps = 51/241 (21%)
Query: 21 LFFDHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS-- 78
L D F FD+ F S + ++ +++PL++ + G T LAYGQTG GK+Y++
Sbjct: 56 LIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMT 115
Query: 79 ----------AMIMKTLQHVMQRC------NKD--DVYMSYLQLYSEKCYDLLNGNKEVT 120
++ + L + +R NKD VY S++++Y+EK +DLL
Sbjct: 116 PPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTP--- 172
Query: 121 LKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKV 180
++P R Q T L S ++ G N+
Sbjct: 173 ------HMPMVAARCQ-------------------RCTCLPLHSQADLHHILELGTRNRR 207
Query: 181 TAVTKMNAQSSRSHTICTIYLGAM---AKLHLVDLAGSEQLFSLSDNYLLRNEARKINLS 237
T MN+ SSRSH I TI++ + +++++VDLAGSE + + R E INL
Sbjct: 208 VRPTNMNSNSSRSHAIVTIHVKSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLG 267
Query: 238 L 238
L
Sbjct: 268 L 268
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 64/250 (25%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS----AMIMK 83
F F + + E ++ + PL+ F G NAT+ AYGQTG GKTYT+ A +++
Sbjct: 52 FGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLE 111
Query: 84 TLQHVMQRC--------NKDD-----VYMSYLQLYSEKCYDLLN---GNKEVTLKNWIFN 127
Q ++ R +++D V++SYL++Y E+ DLL ++++ L+
Sbjct: 112 DEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLRE---- 167
Query: 128 IPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLD--SLNSAVQLIVTGNENKVTAVTK 185
D+R GN VK++D L+ + L+ GN + T T
Sbjct: 168 ----DER--------------GN---VVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATH 206
Query: 186 MNAQSSRSHTICTIYLGA-----------------MAKLHLVDLAGSEQLFSLSDNYLLR 228
+N SSRSHT+ T+ L ++K H VDLAGSE++ LR
Sbjct: 207 LNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELR 266
Query: 229 NEARKINLSL 238
E+ +IN SL
Sbjct: 267 KESIQINSSL 276
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 110/242 (45%), Gaps = 45/242 (18%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV---------S 78
F D + + S + ++ V +++ +G N T++ YGQTG GKTYT+
Sbjct: 74 FKLDGVL-HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHR 132
Query: 79 AMIMKTLQHVMQRCNKD-----DVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQ 133
++ + LQ V + + V +SYL++Y+E +DLL+ +P
Sbjct: 133 GILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLS------------TLPYV-- 178
Query: 134 RVQGPP-DPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSR 192
GP P T +P G L+V A L+ G N++ A MN SSR
Sbjct: 179 ---GPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSR 234
Query: 193 SHTICTIYLGA-----------MAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYL 241
SH I TIYL A +K++LVDLAGSE+L + EA IN SL +L
Sbjct: 235 SHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFL 294
Query: 242 EQ 243
EQ
Sbjct: 295 EQ 296
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 104/239 (43%), Gaps = 46/239 (19%)
Query: 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------A 79
+ F FD ++ N IF PLI+ + G N+T+ AYGQTG GKT+T+
Sbjct: 56 RTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPG 115
Query: 80 MIMKTLQHVMQRCNKDD------VYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQ 133
I + +H+ N V SYL+LY+E+ DL+ N ++ LK
Sbjct: 116 AIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKE---------- 165
Query: 134 RVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRS 193
D G G L++ ++ + L+ G N+ A T+MN SSRS
Sbjct: 166 ------DKTRGIYVDG-------LSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRS 212
Query: 194 HTICTIYLGA-----------MAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYL 241
H+I + + + KL+LVDLAGSE+ E KINLSL L
Sbjct: 213 HSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSAL 271
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 96/214 (44%), Gaps = 47/214 (21%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYT---------VS 78
F+FD +F + +F P++ NG N T+LAYG TG GKT+T V
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVM 133
Query: 79 AMIMKTLQHVMQRCNKDDV---YMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRV 135
+ M L M ++ + +SYL++Y+E+ DLL + + ++
Sbjct: 134 YLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGPLAVRE------------ 181
Query: 136 QGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHT 195
D Q G G LT+ + S + L+ GN+N+ T MNA SSRSH
Sbjct: 182 ----DTQKGVVVHG-------LTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHA 230
Query: 196 ICTIYLG------------AMAKLHLVDLAGSEQ 217
+ IYL +AK+ L+DLAGSE+
Sbjct: 231 VFQIYLRQQDKTASINQNVRIAKMSLIDLAGSER 264
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 108/241 (44%), Gaps = 45/241 (18%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------AMI 81
F FD +F N++ + ++ E+ P+I+ G N T+ AYGQT GKTYT+ +I
Sbjct: 46 FNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVI 105
Query: 82 MKTLQHVMQRCNK--DDVYM---SYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQ 136
+ + + Q+ K D ++ SY+++Y+E DLL G +++
Sbjct: 106 PRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKM----------------- 148
Query: 137 GPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTI 196
P A LT + + + A++ I G +++ TKMN +SSRSHTI
Sbjct: 149 ---KPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTI 205
Query: 197 CTIYLGAMAK--------------LHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLE 242
+ L + K L+LVDLAGSE+ + E IN SL L
Sbjct: 206 FRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILG 265
Query: 243 Q 243
Q
Sbjct: 266 Q 266
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 31/234 (13%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV----SAMIMK 83
F FD IF P+ +N+ IF E+ L+ +G N + AYGQTG GKTYT+ MI
Sbjct: 55 FQFDMIFEPSHTNKEIFEEIR-QLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPM 113
Query: 84 TLQHVM-------QRCNKDDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQ 136
TL H+ +R ++ Y+++Y+E DLL K + I + + D R
Sbjct: 114 TLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHD 173
Query: 137 GPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTI 196
G ++T K+ S + ++ ++ + TA T+ N +SSRSH++
Sbjct: 174 ----------HEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSV 223
Query: 197 CTIYLG---------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYL 241
+++ + KL+LVDLAGSE++ S + E + IN SL L
Sbjct: 224 FMVHINGRNLHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCL 277
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 118/264 (44%), Gaps = 47/264 (17%)
Query: 4 SSEVGFQNRERQQTKIWLFFDHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATL 63
S +V + +Q+ + + ++Q F FD F + NE ++ PL+ +F AT
Sbjct: 117 SKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATC 176
Query: 64 LAYGQTGGGKTYT---------------VSAMIMKTLQHVMQRCNKDD----VYMSYLQL 104
AYGQTG GKT+T + A+ + + ++++ N VY ++ ++
Sbjct: 177 FAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEI 236
Query: 105 YSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDS 164
YS K +DLLN K + + Q+VQ L +++
Sbjct: 237 YSGKVFDLLN------RKTKLRVLEDGKQQVQ-----------------VVGLQEREVKC 273
Query: 165 LNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYLGAMAKLH----LVDLAGSEQLFS 220
+ ++LI GN + + T NA SSRSH + I L KLH L+DLAG+E+
Sbjct: 274 VEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHGKFSLIDLAGNERGAD 333
Query: 221 LSD-NYLLRNEARKINLSLHYLEQ 243
S + R E +IN SL L++
Sbjct: 334 TSSADRQTRLEGAEINKSLLALKE 357
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 111/246 (45%), Gaps = 47/246 (19%)
Query: 22 FFDHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMI 81
+ ++Q F FD F SNE ++ PL+ +F G AT AYGQTG GKT+T+ +
Sbjct: 97 YLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDL 156
Query: 82 MKTLQHVM----------------QRCNKD---DVYMSYLQLYSEKCYDLLNGNKEVTLK 122
Q+ Q C + +VY+++ ++Y+ K +DLLN ++ +
Sbjct: 157 SGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRV- 215
Query: 123 NWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTA 182
+ Q+VQ L ++S + +++I G+ + +
Sbjct: 216 -----LEDGKQQVQ-----------------VVGLQEHLVNSADDVIKMIDMGSACRTSG 253
Query: 183 VTKMNAQSSRSHTICTIYLGAMAKLH----LVDLAGSEQLFSLSD-NYLLRNEARKINLS 237
T N+ SSRSH I L A ++H LVDLAG+E+ S + R E +IN S
Sbjct: 254 QTFANSNSSRSHACFQIILRAKGRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKS 313
Query: 238 LHYLEQ 243
L L++
Sbjct: 314 LLALKE 319
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 98/218 (44%), Gaps = 47/218 (21%)
Query: 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYT--------- 76
+ F FD ++ + ++ E + PLI+ + G N T+ AYGQTG GKTYT
Sbjct: 68 KTFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPE 127
Query: 77 VSAMIMKTLQHVMQRCNKDD-----VYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQS 131
+ +I +H+ ++ V SYL++Y E+ DLL+ +
Sbjct: 128 LRGVIPNAFEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLS--------------KEP 173
Query: 132 DQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSS 191
+R++ +P+TG + +S K + + + L GN+ + T MN SS
Sbjct: 174 GKRLELKENPETGVYI----KDLSSFVTKNVKEIEHVMNL---GNQTRAVGSTHMNEVSS 226
Query: 192 RSHTICTIYLGA------------MAKLHLVDLAGSEQ 217
RSH I I + + KL+LVDLAGSE+
Sbjct: 227 RSHAIFIITVECSERGSDGQDHIRVGKLNLVDLAGSER 264
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 113/250 (45%), Gaps = 64/250 (25%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS----AMIMK 83
F F + + E ++ + PL+ F G NAT+ AYGQTG GKTYT+ A +++
Sbjct: 52 FGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLE 111
Query: 84 TLQHVMQRC--------NKDD-----VYMSYLQLYSEKCYDLLN---GNKEVTLKNWIFN 127
Q ++ R +++D V++SYL++Y E+ DLL ++++ L+
Sbjct: 112 DEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLRE---- 167
Query: 128 IPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLD--SLNSAVQLIVTGNENKVTAVTK 185
D+R GN VK++D L+ + L+ GN + T T
Sbjct: 168 ----DER--------------GN---VVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATH 206
Query: 186 MNAQSSRSHTICTIYLGA-----------------MAKLHLVDLAGSEQLFSLSDNYLLR 228
+N SSRSHT+ T+ L ++K H VDLAGSE++
Sbjct: 207 LNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERL 266
Query: 229 NEARKINLSL 238
E+ +IN SL
Sbjct: 267 KESIQINSSL 276
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 105/236 (44%), Gaps = 43/236 (18%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMI------ 81
F D +F P S + +F EV L+ +G N + AYGQTG GKTYT+
Sbjct: 50 FELDKVFSPQASQQDVFQEVQA-LVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGIN 108
Query: 82 MKTLQHVMQRCNKD------DVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRV 135
+ LQ + + + +S ++Y+E DLL KE PQ +
Sbjct: 109 QRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLL--GKE----------PQEKLEI 156
Query: 136 QGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHT 195
+ PD PG V+ +D +N + G+ N+ T T +N SSRSH
Sbjct: 157 RLCPDGSGQLYVPG----LTEFQVQSVDDINKVFEF---GHTNRTTEFTNLNEHSSRSHA 209
Query: 196 I---------CTIYLGAMAKLHLVDLAGSEQLF-SLSDNYLLRNEARKINLSLHYL 241
+ C+ L KL+LVDLAGSE++ S ++ LR EA+ IN SL L
Sbjct: 210 LLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLR-EAQHINKSLSAL 264
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 107/240 (44%), Gaps = 49/240 (20%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV------SAMI 81
+ FD +G + + I+ + P++ H+ G NA++LAYG TG GKT+T+ +I
Sbjct: 67 YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVI 126
Query: 82 MKTLQHVMQRCNKD---------DVYMSYLQLYSEKCYDLLN-GNKEVTLKNWIFNIPQS 131
+ L ++Q ++ V MSYL++Y EK DLL+ + ++ ++
Sbjct: 127 PRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIRE-------- 178
Query: 132 DQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSS 191
D + PG L+ K + S + + + N+ T++N +SS
Sbjct: 179 --------DCRGNILIPG-------LSQKPISSFADFERHFLPASRNRTVGATRLNQRSS 223
Query: 192 RSHTICTI----------YLGAMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYL 241
RSH + + + KL+L+DLAGSE + L E+ IN SL L
Sbjct: 224 RSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVL 283
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 47/246 (19%)
Query: 22 FFDHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMI 81
+ ++Q F FD F SNE ++ PL+ +F G AT AYGQTG GKT+T+ +
Sbjct: 117 YLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDL 176
Query: 82 MKTLQH----VMQRCNKD---------------DVYMSYLQLYSEKCYDLLNGNKEVTLK 122
Q+ + ++D +VY+++ ++Y+ K +DLLN ++ +
Sbjct: 177 SGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRV- 235
Query: 123 NWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTA 182
+ S Q+VQ L + + +++I G+ + +
Sbjct: 236 -----LEDSRQQVQ-----------------VVGLQEYLVTCADDVIKMINMGSACRTSG 273
Query: 183 VTKMNAQSSRSHTICTIYLGAMAKLH----LVDLAGSEQLFSLSD-NYLLRNEARKINLS 237
T N+ SSRSH I L +LH LVDLAG+E+ S + R E +IN S
Sbjct: 274 QTFANSNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKS 333
Query: 238 LHYLEQ 243
L L++
Sbjct: 334 LLALKE 339
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 47/246 (19%)
Query: 22 FFDHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMI 81
+ ++Q F FD F SNE ++ PL+ +F G AT AYGQTG GKT+T+ +
Sbjct: 45 YLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDL 104
Query: 82 MKTLQH----VMQRCNKD---------------DVYMSYLQLYSEKCYDLLNGNKEVTLK 122
Q+ + ++D +VY+++ ++Y+ K +DLLN ++ +
Sbjct: 105 SGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRV- 163
Query: 123 NWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTA 182
+ S Q+VQ L + + +++I G+ + +
Sbjct: 164 -----LEDSRQQVQ-----------------VVGLQEYLVTCADDVIKMINMGSACRTSG 201
Query: 183 VTKMNAQSSRSHTICTIYLGAMAKLH----LVDLAGSEQLFSLSD-NYLLRNEARKINLS 237
T N+ SSRSH I L +LH LVDLAG+E+ S + R E +IN S
Sbjct: 202 QTFANSNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKS 261
Query: 238 LHYLEQ 243
L L++
Sbjct: 262 LLALKE 267
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 105/244 (43%), Gaps = 57/244 (23%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV---------- 77
F FD +F + IF + P ++ + NG N T+ AYGQTG GK+YT+
Sbjct: 49 FTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDG 108
Query: 78 SAMIMKTLQHVMQRCNKD------DVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQS 131
+I + ++ + V +SY+++Y E+ DLL + N+P
Sbjct: 109 RGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQND--------NLPVH 160
Query: 132 DQRVQGPPDPQTGPASPGNGRSAASLTVKKL-----DSLNSAVQLIVTGNENKVTAVTKM 186
+++ +G + VK L S+ +++ G + A T M
Sbjct: 161 EEKNRG-------------------VYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNM 201
Query: 187 NAQSSRSHTICTIYL---------GAMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLS 237
N +SSRSH+I I + +L LVDLAGSE++ + EA+KIN S
Sbjct: 202 NQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKS 261
Query: 238 LHYL 241
L L
Sbjct: 262 LSAL 265
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 101/217 (46%), Gaps = 45/217 (20%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV----SAMIMK 83
F FD IF D+N +F EV L+ +G N + AYGQTG GKT+T+ +I
Sbjct: 110 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPS 168
Query: 84 TLQHVMQRCNK-------DDVYMSYLQLYSEKCYDLL---NGNKEVT---LKNWIFNIPQ 130
T+ H+ NK V ++++Y+E DLL N NKE T LK+ I +
Sbjct: 169 TISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI----R 224
Query: 131 SDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQS 190
DQ + KL+S ++ N+ + TA T N S
Sbjct: 225 HDQETKTTTITNVTSV--------------KLESEEMVEIILKKANKLRSTASTASNEHS 270
Query: 191 SRSHTICTIYL-GAMAK--------LHLVDLAGSEQL 218
SRSH+I I+L G+ AK L+LVDLAGSE++
Sbjct: 271 SRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERI 307
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 39/239 (16%)
Query: 23 FDHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS---- 78
F + F+FD IF SN+ +F E L LI +G N + AYGQTG GKT+T+S
Sbjct: 427 FSNLRFLFDKIFEREQSNDLVFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTN 485
Query: 79 -------AMIMKTLQHVMQRCNKDDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQS 131
I ++ + ++ V ++++Y+E DLLN + K + I
Sbjct: 486 GMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTK---YEIKHD 542
Query: 132 DQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSS 191
D + G + +++ + S A+ ++ N+ + TA TK N SS
Sbjct: 543 D--IAGK-------------TTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSS 587
Query: 192 RSHTICTIYL---------GAMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYL 241
RSH+I I L + L+L+DLAGSE+L + E + IN SL L
Sbjct: 588 RSHSIFIIDLQGYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCL 646
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 114/243 (46%), Gaps = 49/243 (20%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV----SAMIMK 83
F FD IF ++N+ IF EV LI +G N + AYGQTG GKTYT+ ++
Sbjct: 76 FKFDKIFDQQETNDEIFKEV-GQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGDGIVPA 134
Query: 84 TLQHVMQRCNK-------DDVYMSYLQLYSEKCYDLL--------NGNKEVTLKNWIFNI 128
T+ H+ +K V ++++Y+E DLL N ++ K+ I
Sbjct: 135 TINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEI--- 191
Query: 129 PQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNA 188
+ DQ ++ ++T LDS ++ +++ N+ + TA T N
Sbjct: 192 -RHDQELKTT--------------YITNITTCVLDSRDTVDKVLKRANKLRSTASTAANE 236
Query: 189 QSSRSHTICTIYL-----GAMAK----LHLVDLAGSEQL-FSLSDNYLLRNEARKINLSL 238
SSRSH+I I+L G K L+LVDLAGSE+L S+ LR E + IN SL
Sbjct: 237 HSSRSHSIFIIHLEGKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLR-ETQSINKSL 295
Query: 239 HYL 241
L
Sbjct: 296 SCL 298
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 101/217 (46%), Gaps = 45/217 (20%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV----SAMIMK 83
F FD IF D+N +F EV L+ +G N + AYGQTG GKT+T+ +I
Sbjct: 54 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 112
Query: 84 TLQHVMQRCNK-------DDVYMSYLQLYSEKCYDLL---NGNKEVT---LKNWIFNIPQ 130
T+ H+ NK V ++++Y+E DLL N NKE T LK+ I +
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI----R 168
Query: 131 SDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQS 190
DQ + KL+S ++ N+ + TA T N S
Sbjct: 169 HDQETKTTTITNVTSC--------------KLESEEMVEIILKKANKLRSTASTASNEHS 214
Query: 191 SRSHTICTIYL-GAMAK--------LHLVDLAGSEQL 218
SRSH+I I+L G+ AK L+LVDLAGSE++
Sbjct: 215 SRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERI 251
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 101/217 (46%), Gaps = 45/217 (20%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV----SAMIMK 83
F FD IF D+N +F EV L+ +G N + AYGQTG GKT+T+ +I
Sbjct: 53 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 111
Query: 84 TLQHVMQRCNK-------DDVYMSYLQLYSEKCYDLL---NGNKEVT---LKNWIFNIPQ 130
T+ H+ NK V ++++Y+E DLL N NKE T LK+ I +
Sbjct: 112 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI----R 167
Query: 131 SDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQS 190
DQ + KL+S ++ N+ + TA T N S
Sbjct: 168 HDQETKTTTITNVTSC--------------KLESEEMVEIILKKANKLRSTASTASNEHS 213
Query: 191 SRSHTICTIYL-GAMAK--------LHLVDLAGSEQL 218
SRSH+I I+L G+ AK L+LVDLAGSE++
Sbjct: 214 SRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERI 250
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 101/217 (46%), Gaps = 45/217 (20%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV----SAMIMK 83
F FD IF D+N +F EV L+ +G N + AYGQTG GKT+T+ +I
Sbjct: 65 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 123
Query: 84 TLQHVMQRCNK-------DDVYMSYLQLYSEKCYDLL---NGNKEVT---LKNWIFNIPQ 130
T+ H+ NK V ++++Y+E DLL N NKE T LK+ I +
Sbjct: 124 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI----R 179
Query: 131 SDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQS 190
DQ + KL+S ++ N+ + TA T N S
Sbjct: 180 HDQETKTTTITNVTSC--------------KLESEEMVEIILKKANKLRSTASTASNEHS 225
Query: 191 SRSHTICTIYL-GAMAK--------LHLVDLAGSEQL 218
SRSH+I I+L G+ AK L+LVDLAGSE++
Sbjct: 226 SRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERI 262
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 52/254 (20%)
Query: 23 FDHQVFIFDNIFGPNDSN-------ETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTY 75
+ + F FD F +++ E ++ + ++H F G + + AYGQTG GK+Y
Sbjct: 93 LEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSY 152
Query: 76 TV------SAMIMKTLQHVMQR--CNKDD-------VYMSYLQLYSEKCYDLLNGNKEVT 120
T+ +I +T + + QR +D+ V +SY ++Y+E DL
Sbjct: 153 TMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDL-------- 204
Query: 121 LKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKV 180
L + N P +V+ SP G LT + L ++ + G+ ++
Sbjct: 205 LAPVVPNKPPYYLKVR---------ESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRT 255
Query: 181 TAVTKMNAQSSRSHTICTIYLGAM-------------AKLHLVDLAGSEQLFSLSDNYLL 227
A TKMN SSRSH + TI L + +++ LVDLAGSE+ S
Sbjct: 256 VASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQR 315
Query: 228 RNEARKINLSLHYL 241
E IN SL L
Sbjct: 316 LREGSNINKSLTTL 329
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 103/250 (41%), Gaps = 57/250 (22%)
Query: 28 FIFDNIF----GPND----SNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSA 79
F FD + P D S + ++ ++ ++ H F G N + AYGQTG GK+YT+
Sbjct: 66 FSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG 125
Query: 80 MIMKTLQHVMQRCNKD---------------DVYMSYLQLYSEKCYDLLNGNKEVTLKNW 124
K Q ++ + +D V +SY+++Y E+ DLLN
Sbjct: 126 KQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLN---------- 175
Query: 125 IFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVT 184
P++ ++ P GP L+ + S N L+ +GN+ + A T
Sbjct: 176 ----PKNKGNLRVREHPLLGPY-------VEDLSKLAVTSYNDIQDLMDSGNKARTVAAT 224
Query: 185 KMNAQSSRSHTICTIYLG-------------AMAKLHLVDLAGSEQLFSLSDNYLLRNEA 231
MN SSRSH + I ++K+ LVDLAGSE+ S E
Sbjct: 225 NMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEG 284
Query: 232 RKINLSLHYL 241
IN SL L
Sbjct: 285 ANINKSLTTL 294
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 46/238 (19%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS--------- 78
+ FD +F + S E ++ + ++ + G N T+ AYGQT GKT+T+
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM 105
Query: 79 AMIMKTLQHVMQRCNKDD------VYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSD 132
+I + +Q + D + +SY ++Y +K DLL+ +K ++ +
Sbjct: 106 GIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSK------TNLSVHEDK 159
Query: 133 QRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSR 192
RV P G T + + S + + I G N+ AVT MN SSR
Sbjct: 160 NRV---------PYVKG-------CTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSR 203
Query: 193 SHTICTIYLGA---------MAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYL 241
SH+I I + KL+LVDLAGSE++ + +EA+ IN SL L
Sbjct: 204 SHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSAL 261
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 103/250 (41%), Gaps = 57/250 (22%)
Query: 28 FIFDNIF----GPND----SNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSA 79
F FD + P D S + ++ ++ ++ H F G N + AYGQTG GK+YT+
Sbjct: 50 FSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG 109
Query: 80 MIMKTLQHVMQRCNKD---------------DVYMSYLQLYSEKCYDLLNGNKEVTLKNW 124
K Q ++ + +D V +SY+++Y E+ DLLN
Sbjct: 110 KQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLN---------- 159
Query: 125 IFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVT 184
P++ ++ P GP L+ + S N L+ +GN+ + A T
Sbjct: 160 ----PKNKGNLRVREHPLLGPY-------VEDLSKLAVTSYNDIQDLMDSGNKARTVAAT 208
Query: 185 KMNAQSSRSHTICTIYLG-------------AMAKLHLVDLAGSEQLFSLSDNYLLRNEA 231
MN SSRSH + I ++K+ LVDLAGSE+ S E
Sbjct: 209 NMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEG 268
Query: 232 RKINLSLHYL 241
IN SL L
Sbjct: 269 ANINKSLTTL 278
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 46/238 (19%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS--------- 78
+ FD +F + S E ++ + ++ + G N T+ AYGQT GKT+T+
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM 105
Query: 79 AMIMKTLQHVMQRCNKDD------VYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSD 132
+I + +Q + D + +SY ++Y +K DLL +V+ N ++ +
Sbjct: 106 GIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLL----DVSKTN--LSVHEDK 159
Query: 133 QRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSR 192
RV P G T + + S + + I G N+ AVT MN SSR
Sbjct: 160 NRV---------PYVKG-------CTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSR 203
Query: 193 SHTICTIYLGA---------MAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYL 241
SH+I I + KL+LVDLAGSE++ + +EA+ IN SL L
Sbjct: 204 SHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSAL 261
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 103/250 (41%), Gaps = 57/250 (22%)
Query: 28 FIFDNIF----GPND----SNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSA 79
F FD + P D S + ++ ++ ++ H F G N + AYGQTG GK+YT+
Sbjct: 50 FSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG 109
Query: 80 MIMKTLQHVMQRCNKD---------------DVYMSYLQLYSEKCYDLLNGNKEVTLKNW 124
K Q ++ + +D V +SY+++Y E+ DLLN
Sbjct: 110 KQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLN---------- 159
Query: 125 IFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVT 184
P++ ++ P GP L+ + S N L+ +GN+ + A T
Sbjct: 160 ----PKNKGNLRVREHPLLGPY-------VEDLSKLAVTSYNDIQDLMDSGNKARTVAAT 208
Query: 185 KMNAQSSRSHTICTIYLG-------------AMAKLHLVDLAGSEQLFSLSDNYLLRNEA 231
MN SSRSH + I ++K+ LVDLAGSE+ S E
Sbjct: 209 NMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEG 268
Query: 232 RKINLSLHYL 241
IN SL L
Sbjct: 269 ANINKSLTTL 278
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 103/250 (41%), Gaps = 57/250 (22%)
Query: 28 FIFDNIF----GPND----SNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSA 79
F FD + P D S + ++ ++ ++ H F G N + AYGQTG GK+YT+
Sbjct: 50 FSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG 109
Query: 80 MIMKTLQHVMQRCNKD---------------DVYMSYLQLYSEKCYDLLNGNKEVTLKNW 124
K Q ++ + +D V +SY+++Y E+ DLLN
Sbjct: 110 KQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLN---------- 159
Query: 125 IFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVT 184
P++ ++ P GP L+ + S N L+ +GN+ + A T
Sbjct: 160 ----PKNKGNLRVREHPLLGPY-------VEDLSKLAVTSYNDIQDLMDSGNKPRTVAAT 208
Query: 185 KMNAQSSRSHTICTIYLG-------------AMAKLHLVDLAGSEQLFSLSDNYLLRNEA 231
MN SSRSH + I ++K+ LVDLAGSE+ S E
Sbjct: 209 NMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEG 268
Query: 232 RKINLSLHYL 241
IN SL L
Sbjct: 269 ANINKSLTTL 278
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 113/251 (45%), Gaps = 56/251 (22%)
Query: 26 QVFIFDNIFGPNDSN--------ETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV 77
+VF +D+ F D + + +F + ++ + F+G NA + AYGQTG GK+YT+
Sbjct: 51 KVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 110
Query: 78 ------SAMIMKTLQHVMQRCNKDD-------VYMSYLQLYSEKCYDLLNGNKEVTLKNW 124
+I + + +R K++ V +SY+++Y+EK DLL+
Sbjct: 111 MGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD---------- 160
Query: 125 IFNIPQ-SDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAV 183
P+ S Q ++ GP G + A + + K ++SL S GN+++ A
Sbjct: 161 ----PKGSRQTLKVREHSVLGPYVDGLSKLAVT-SYKDIESLMSE------GNKSRTVAA 209
Query: 184 TKMNAQSSRSHTICTIYLG-------------AMAKLHLVDLAGSEQLFSLSDNYLLRNE 230
T MN +SSRSH + I L + KL LVDLAGSE+ E
Sbjct: 210 TNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKE 269
Query: 231 ARKINLSLHYL 241
IN SL L
Sbjct: 270 GSNINKSLTTL 280
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 43/213 (20%)
Query: 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------A 79
Q+F FD +F P S IF E++ PLI +G N + AYGQTG GKTYT+
Sbjct: 114 QIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVG 172
Query: 80 MIMKTLQHVMQRCN-------KDDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSD 132
+I +T+ + + ++ ++L++Y+E YDLL+ Q D
Sbjct: 173 VIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE-------------QKD 219
Query: 133 QRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSR 192
++ + + N +++T + + N L+ T N+ TA T N +SSR
Sbjct: 220 MEIRMAKNNK-------NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSR 272
Query: 193 SHTICTIYL-GAMAK--------LHLVDLAGSE 216
SH + + L G A+ ++LVDLAGSE
Sbjct: 273 SHAVTKLELIGRHAEKQEISVGSINLVDLAGSE 305
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 43/213 (20%)
Query: 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------A 79
Q+F FD +F P S IF E++ PLI +G N + AYGQTG GKTYT+
Sbjct: 106 QIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVG 164
Query: 80 MIMKTLQHVMQRCN-------KDDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSD 132
+I +T+ + + ++ ++L++Y+E YDLL+ Q D
Sbjct: 165 VIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE-------------QKD 211
Query: 133 QRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSR 192
++ + + N +++T + + N L+ T N+ TA T N +SSR
Sbjct: 212 MEIRMAKNNK-------NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSR 264
Query: 193 SHTICTIYL-GAMAK--------LHLVDLAGSE 216
SH + + L G A+ ++LVDLAGSE
Sbjct: 265 SHAVTKLELIGRHAEKQEISVGSINLVDLAGSE 297
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 43/214 (20%)
Query: 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------ 78
Q+F FD +F P S IF E++ PLI +G N + AYGQTG GKTYT+
Sbjct: 99 QQIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV 157
Query: 79 AMIMKTLQHVMQRCN-------KDDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQS 131
+I +T+ + + ++ ++L++Y+E YDLL+ Q
Sbjct: 158 GVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE-------------QK 204
Query: 132 DQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSS 191
D ++ + + N +++T + + N L+ T N+ TA T N +SS
Sbjct: 205 DMEIRMAKNNK-------NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSS 257
Query: 192 RSHTICTIYL-GAMAK--------LHLVDLAGSE 216
RSH + + L G A+ ++LVDLAGSE
Sbjct: 258 RSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE 291
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 43/213 (20%)
Query: 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------A 79
Q+F FD +F P S IF E++ PLI +G N + AYGQTG GKTYT+
Sbjct: 103 QIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVG 161
Query: 80 MIMKTLQHVMQRCN-------KDDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSD 132
+I +T+ + + ++ ++L++Y+E YDLL+ Q D
Sbjct: 162 VIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE-------------QKD 208
Query: 133 QRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSR 192
++ + + N +++T + + N L+ T N+ TA T N +SSR
Sbjct: 209 MEIRMAKNNK-------NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSR 261
Query: 193 SHTICTIYL-GAMAK--------LHLVDLAGSE 216
SH + + L G A+ ++LVDLAGSE
Sbjct: 262 SHAVTKLELIGRHAEKQEISVGSINLVDLAGSE 294
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 100/217 (46%), Gaps = 45/217 (20%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV----SAMIMK 83
F FD IF D+N +F EV L+ +G N + AYGQTG GKT+T+ +I
Sbjct: 54 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 112
Query: 84 TLQHVMQRCNK-------DDVYMSYLQLYSEKCYDLL---NGNKEVT---LKNWIFNIPQ 130
T+ H+ NK V ++++Y+E DLL N NKE T LK+ I +
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI----R 168
Query: 131 SDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQS 190
DQ + KL+S ++ N+ + TA T N S
Sbjct: 169 HDQETKTTTITNVTSC--------------KLESEEMVEIILKKANKLRSTASTASNEHS 214
Query: 191 SRSHTICTIYL-GAMAK--------LHLVDLAGSEQL 218
SRSH+I I+L G+ AK L+LVDLAGS ++
Sbjct: 215 SRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSARI 251
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 46/238 (19%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS--------- 78
+ FD +F + S E ++ + ++ + G N T+ AYGQT GK +T+
Sbjct: 46 YAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGM 105
Query: 79 AMIMKTLQHVMQRCNKDD------VYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSD 132
+I + +Q + D + +SY ++Y +K DLL +V+ N ++ +
Sbjct: 106 GIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLL----DVSKTN--LSVHEDK 159
Query: 133 QRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSR 192
RV P G T + + S + + I G N+ AVT MN SSR
Sbjct: 160 NRV---------PYVKG-------CTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSR 203
Query: 193 SHTICTIYLGA---------MAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYL 241
SH+I I + KL+LVDLAGSE++ + +EA+ IN SL L
Sbjct: 204 SHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSAL 261
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 43/213 (20%)
Query: 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------A 79
Q+F FD +F P S IF E++ PLI +G N + AYGQ+G GKTYT+
Sbjct: 103 QIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVG 161
Query: 80 MIMKTLQHVMQRCN-------KDDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSD 132
+I +T+ + + ++ ++L++Y+E YDLL+ Q D
Sbjct: 162 VIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE-------------QKD 208
Query: 133 QRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSR 192
++ + + N +++T + + N L+ T N+ TA T N +SSR
Sbjct: 209 MEIRMAKNNK-------NDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSR 261
Query: 193 SHTICTIYL-GAMAK--------LHLVDLAGSE 216
SH + + L G A+ ++LVDLAGSE
Sbjct: 262 SHAVTKLELIGRHAEKQEISVGSINLVDLAGSE 294
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 100/217 (46%), Gaps = 45/217 (20%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV----SAMIMK 83
F FD IF D+N +F EV L+ +G N + AYGQTG GKT+T+ +I
Sbjct: 54 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 112
Query: 84 TLQHVMQRCNK-------DDVYMSYLQLYSEKCYDLL---NGNKEVT---LKNWIFNIPQ 130
T+ H+ NK V ++++Y+E DLL N NKE T LK+ I +
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI----R 168
Query: 131 SDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQS 190
DQ + KL+S ++ N+ + TA T N S
Sbjct: 169 HDQETKTTTITNVTSC--------------KLESEEMVEIILKKANKLRSTASTASNEHS 214
Query: 191 SRSHTICTIYL-GAMAK--------LHLVDLAGSEQL 218
S SH+I I+L G+ AK L+LVDLAGSE++
Sbjct: 215 SASHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERI 251
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 46/215 (21%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKT-LQ 86
++FD + PN + E ++ ++ + G N T+ AYGQT GKT+T+ + L
Sbjct: 46 YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLM 105
Query: 87 HVMQRCNKD--------------DVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSD 132
++ R D + +SY ++Y +K DLL+ +K N+ +
Sbjct: 106 GIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKT--------NLAVHE 157
Query: 133 QRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSR 192
+ + P T + + S + +I G N+ AVT MN SSR
Sbjct: 158 DKNRVP--------------YVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSR 203
Query: 193 SHTICTIYLGA---------MAKLHLVDLAGSEQL 218
SH+I I + KL+LVDLAGSE++
Sbjct: 204 SHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKV 238
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 54/263 (20%)
Query: 9 FQNRERQQTKIWLFFDHQVFIFDNIFGPNDSNETIFTEVLVPLINHMF-NGINATLLAYG 67
+ + R + + + + FI D +F N T++ + PLI ++ NG + AYG
Sbjct: 33 YIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYG 92
Query: 68 QTGGGKTYTV-----------------SAMIMKTLQHVMQRCNKDDVYMSYLQLYSEKCY 110
QTG GKTYT+ +A + T ++ + N +++S+ ++Y K Y
Sbjct: 93 QTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLY 152
Query: 111 DLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQ 170
DLL K V A+ NG+ + K+ + + +
Sbjct: 153 DLLQKRKMV--------------------------AALENGKKEVVVKDLKILRVLTKEE 186
Query: 171 LI---VTGNENKVTAVTKMNAQSSRSHTICTIYLG------AMAKLHLVDLAGSEQ-LFS 220
LI + G + V N +SSRSH I I L ++ K+ +DLAGSE+ +
Sbjct: 187 LILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINKNTSLGKIAFIDLAGSERGADT 246
Query: 221 LSDNYLLRNEARKINLSLHYLEQ 243
+S N + + IN SL L++
Sbjct: 247 VSQNKQTQTDGANINRSLLALKE 269
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 104/245 (42%), Gaps = 43/245 (17%)
Query: 19 IWLFFDHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV- 77
+W + ++D +F N + + +F + L+ +G N + AYGQTG GKT+T+
Sbjct: 40 LWKDDKAKQHMYDRVFDGNATQDDVFEDTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTIY 98
Query: 78 -----SAMIMKTLQHVMQRCNKDDVYMSY------LQLYSEKCYDLLNGNKEVTLKNWIF 126
+ + + + + KD S+ ++LY + DLL
Sbjct: 99 GADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLL------------- 145
Query: 127 NIPQSDQRVQ-GPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTK 185
+P+ +R++ G S N +TV + + +I G+E + T T
Sbjct: 146 -LPKQAKRLKLDIKKDSKGMVSVEN------VTVVSISTYEELKTIIQRGSEQRHTTGTL 198
Query: 186 MNAQSSRSHTICTIYLG---------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINL 236
MN QSSRSH I ++ + A KL VDLAGSE++ EA+ IN
Sbjct: 199 MNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINK 258
Query: 237 SLHYL 241
SL L
Sbjct: 259 SLSAL 263
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 103/244 (42%), Gaps = 46/244 (18%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYT----------V 77
F FD +F P + +F E+ + L+ +G + AYGQTG GKT+T +
Sbjct: 85 FSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQL 143
Query: 78 SAMIMKTLQH---VMQRCNKD----DVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQ 130
+I + L+H V Q + SY+++Y+E DLL +
Sbjct: 144 EGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGG------E 197
Query: 131 SDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQS 190
+ R GP + + N R K++D+ L+ +N+ A T N +S
Sbjct: 198 CEIRRAGPGSEEL---TVTNARYVPVSCEKEVDA------LLHLARQNRAVARTAQNERS 248
Query: 191 SRSHTICTIYLGAM---------AKLHLVDLAGSEQL---FSLSDNYLLR-NEARKINLS 237
SRSH++ + + A L LVDLAGSE+L +L R E + IN S
Sbjct: 249 SRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSS 308
Query: 238 LHYL 241
L L
Sbjct: 309 LSTL 312
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 107/245 (43%), Gaps = 45/245 (18%)
Query: 20 WLFFDHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV-- 77
W + I+D +F S + IF + L+ +G N + AYGQTG GKT+T+
Sbjct: 49 WKDDKRKQHIYDRVFDMRASQDDIFEDTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYG 107
Query: 78 -------SAMIMKTLQHVMQRCNKD-----DVYMSYLQLYSEKCYDLLNGNKEVTLKNWI 125
+ K L ++++R +K YM ++LY + DLL
Sbjct: 108 HESNPGLTPRATKELFNILKRDSKRFSFSLKAYM--VELYQDTLVDLL------------ 153
Query: 126 FNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTK 185
+P+S +R++ + S G ++T + +L ++ G+E + + T
Sbjct: 154 --LPKSARRLK----LEIKKDSKGMV-FVENVTTIPISTLEELRMILERGSERRHVSGTN 206
Query: 186 MNAQSSRSHTICTIYL---------GAMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINL 236
MN +SSRSH I ++ + A KL VDLAGSE++ EA+ IN
Sbjct: 207 MNEESSRSHLILSVVIESIDLQTQSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINK 266
Query: 237 SLHYL 241
SL L
Sbjct: 267 SLSAL 271
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 11 NRERQQTKIWLFFDHQVFIFDNIF-GPNDSNETIFTEVLVPLINHMFNGINATLLAYGQT 69
N+ R +W+ + + IF G D N+ L+P + F IN+ +A +
Sbjct: 233 NKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQ------LLPAESTRFKSINSEFIAILKK 286
Query: 70 GGGKTYTVSAMIMKTLQHVMQRCN 93
G + + ++ +Q M+R +
Sbjct: 287 VSGAPLILEVLAIERIQQTMERLS 310
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 11 NRERQQTKIWLFFDHQVFIFDNIF-GPNDSNETIFTEVLVPLINHMFNGINATLLAYGQT 69
N+ R +W+ + + IF G D N+ L+P + F IN+ +A +
Sbjct: 233 NKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQ------LLPAESTRFKSINSEFIAILKK 286
Query: 70 GGGKTYTVSAMIMKTLQHVMQRCN 93
G + + ++ +Q M+R +
Sbjct: 287 VSGAPLILEVLAIERIQQTMERLS 310
>pdb|3EKL|A Chain A, Structural Characterization Of Tetrameric Mycobacterium
Tuberculosis Fructose 1,6-Bisphosphate Aldolase -
Substrate Binding And Catalysis Mechanism Of A Class Iia
Bacterial Aldolase
pdb|3EKZ|A Chain A, Structural Characterization Of Tetrameric Mycobacterium
Tuberculosis Fructose 1,6-Bisphosphate Aldolase -
Substrate Binding And Catalysis Mechanism Of A Class Iia
Bacterial Aldolase
pdb|3ELF|A Chain A, Structural Characterization Of Tetrameric Mycobacterium
Tuberculosis Fructose 1,6-Bisphosphate Aldolase -
Substrate Binding And Catalysis Mechanism Of A Class Iia
Bacterial Aldolase
pdb|4DEF|A Chain A, Active Site Loop Dynamics Of A Class Iia Fructose
1,6-bisphosphate Aldolase From M. Tuberculosis
pdb|4DEL|A Chain A, Active Site Loop Dynamics Of A Class Iia Fructose
1,6-bisphosphate Aldolase From M. Tuberculosis
Length = 349
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 50 PLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKT----LQHVMQRCN 93
P+ HMF + L G+ G K Y + + K Q V+Q CN
Sbjct: 286 PIAGHMFTNYDGVLKVDGEVGVKKVYDPRSYLKKAEASMSQRVVQACN 333
>pdb|4A21|A Chain A, Structure Of Mycobacterium Tuberculosis Fructose 1,6-
Bisphosphate Aldolase Bound To Sulfate
pdb|4A21|B Chain B, Structure Of Mycobacterium Tuberculosis Fructose 1,6-
Bisphosphate Aldolase Bound To Sulfate
pdb|4A21|C Chain C, Structure Of Mycobacterium Tuberculosis Fructose 1,6-
Bisphosphate Aldolase Bound To Sulfate
pdb|4A21|D Chain D, Structure Of Mycobacterium Tuberculosis Fructose 1,6-
Bisphosphate Aldolase Bound To Sulfate
pdb|4A22|A Chain A, Structure Of Mycobacterium Tuberculosis Fructose
1,6-Bisphosphate Aldolase Bound To
N-(4-Hydroxybutyl)-Glycolohydroxamic Acid Bis-Phosphate
pdb|4A22|B Chain B, Structure Of Mycobacterium Tuberculosis Fructose
1,6-Bisphosphate Aldolase Bound To
N-(4-Hydroxybutyl)-Glycolohydroxamic Acid Bis-Phosphate
pdb|4A22|C Chain C, Structure Of Mycobacterium Tuberculosis Fructose
1,6-Bisphosphate Aldolase Bound To
N-(4-Hydroxybutyl)-Glycolohydroxamic Acid Bis-Phosphate
pdb|4A22|D Chain D, Structure Of Mycobacterium Tuberculosis Fructose
1,6-Bisphosphate Aldolase Bound To
N-(4-Hydroxybutyl)-Glycolohydroxamic Acid Bis-Phosphate
Length = 344
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 50 PLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKT----LQHVMQRCN 93
P+ HMF + L G+ G K Y + + K Q V+Q CN
Sbjct: 286 PIAGHMFTNYDGVLKVDGEVGVKKVYDPRSYLKKAEASMSQRVVQACN 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,158,953
Number of Sequences: 62578
Number of extensions: 284589
Number of successful extensions: 834
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 72
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)