Query psy7226
Match_columns 279
No_of_seqs 191 out of 1302
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 21:19:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4280|consensus 100.0 7.5E-62 1.6E-66 463.3 1.5 215 25-260 51-290 (574)
2 KOG0245|consensus 100.0 7.1E-60 1.5E-64 461.4 1.5 208 26-253 47-289 (1221)
3 KOG0243|consensus 100.0 6.6E-60 1.4E-64 468.0 -0.6 217 24-254 93-339 (1041)
4 KOG0240|consensus 100.0 6E-59 1.3E-63 434.3 2.0 217 26-264 49-289 (607)
5 cd01373 KISc_KLP2_like Kinesin 100.0 4.3E-58 9.4E-63 423.5 -1.8 205 25-251 40-279 (337)
6 cd01370 KISc_KIP3_like Kinesin 100.0 1.5E-57 3.3E-62 420.0 -1.9 207 25-253 53-283 (338)
7 PLN03188 kinesin-12 family pro 100.0 4.1E-57 8.8E-62 452.5 -0.3 210 20-251 126-375 (1320)
8 cd01368 KISc_KIF23_like Kinesi 100.0 3.1E-57 6.6E-62 418.9 -1.3 213 24-252 53-288 (345)
9 KOG0242|consensus 100.0 2.6E-57 5.6E-62 446.1 -4.7 216 26-263 53-288 (675)
10 cd01367 KISc_KIF2_like Kinesin 100.0 1.7E-55 3.6E-60 404.0 -0.7 206 24-252 49-271 (322)
11 KOG0239|consensus 100.0 1.1E-54 2.3E-59 426.3 0.7 215 27-263 361-597 (670)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 5.8E-55 1.2E-59 405.6 -2.4 211 25-254 47-290 (356)
13 cd01376 KISc_KID_like Kinesin 100.0 5.5E-55 1.2E-59 400.2 -2.6 206 25-252 46-268 (319)
14 cd01375 KISc_KIF9_like Kinesin 100.0 6.5E-55 1.4E-59 402.0 -3.9 212 24-252 46-282 (334)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 9.6E-55 2.1E-59 400.8 -3.6 208 25-253 47-280 (333)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 2.3E-54 4.9E-59 397.2 -3.6 207 25-253 42-272 (325)
17 cd01364 KISc_BimC_Eg5 Kinesin 100.0 4.9E-54 1.1E-58 399.0 -2.0 210 24-252 46-290 (352)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 4.3E-54 9.3E-59 394.7 -2.5 205 25-252 39-266 (321)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 1.5E-53 3.4E-58 394.1 -0.7 211 24-253 38-285 (341)
20 KOG0247|consensus 100.0 1.8E-52 4E-57 399.6 1.6 217 25-257 80-383 (809)
21 KOG0246|consensus 100.0 1E-52 2.2E-57 391.8 -1.8 223 9-254 241-489 (676)
22 KOG0241|consensus 100.0 1.4E-51 3.1E-56 398.5 3.7 211 23-253 50-293 (1714)
23 cd01366 KISc_C_terminal Kinesi 100.0 3.1E-52 6.8E-57 383.6 -2.8 207 25-251 44-272 (329)
24 PF00225 Kinesin: Kinesin moto 100.0 5.4E-52 1.2E-56 382.8 -12.1 215 19-251 34-279 (335)
25 cd00106 KISc Kinesin motor dom 100.0 1.9E-50 4.1E-55 371.5 -2.6 208 25-252 44-275 (328)
26 smart00129 KISc Kinesin motor, 100.0 3.5E-50 7.6E-55 370.8 -2.2 205 25-251 45-272 (335)
27 COG5059 KIP1 Kinesin-like prot 100.0 2.7E-45 5.9E-50 357.3 3.6 205 25-251 55-280 (568)
28 KOG0244|consensus 100.0 4.4E-46 9.5E-51 364.7 -4.4 213 20-253 26-263 (913)
29 cd01363 Motor_domain Myosin an 100.0 1.9E-35 4.2E-40 251.2 0.8 130 43-253 8-155 (186)
30 COG5059 KIP1 Kinesin-like prot 98.1 2.9E-07 6.2E-12 90.8 -3.4 198 25-249 352-566 (568)
31 COG0556 UvrB Helicase subunit 95.7 0.0044 9.6E-08 59.9 1.5 76 26-106 3-97 (663)
32 PF00308 Bac_DnaA: Bacterial d 95.6 0.0028 6E-08 55.2 -0.4 56 26-84 3-58 (219)
33 COG2805 PilT Tfp pilus assembl 94.6 0.01 2.3E-07 53.8 0.3 36 48-83 113-148 (353)
34 COG2804 PulE Type II secretory 94.4 0.028 6E-07 54.3 2.6 71 12-82 192-280 (500)
35 PRK06893 DNA replication initi 94.3 0.021 4.5E-07 50.0 1.5 54 26-85 11-64 (229)
36 PRK12377 putative replication 93.1 0.027 5.8E-07 50.0 0.1 56 28-85 71-126 (248)
37 PF04851 ResIII: Type III rest 92.5 0.051 1.1E-06 44.5 0.9 27 60-86 25-51 (184)
38 PRK14086 dnaA chromosomal repl 92.4 0.034 7.3E-07 55.4 -0.3 57 25-84 282-338 (617)
39 PRK06526 transposase; Provisio 92.3 0.038 8.3E-07 49.2 -0.1 23 63-85 101-123 (254)
40 PRK08116 hypothetical protein; 91.9 0.04 8.8E-07 49.4 -0.4 58 27-86 81-140 (268)
41 TIGR02928 orc1/cdc6 family rep 91.9 0.033 7E-07 51.7 -1.1 58 24-82 4-62 (365)
42 PRK06620 hypothetical protein; 91.8 0.019 4.2E-07 49.7 -2.5 51 25-79 10-63 (214)
43 PRK08084 DNA replication initi 91.5 0.059 1.3E-06 47.3 0.2 54 26-85 17-70 (235)
44 PRK07952 DNA replication prote 91.2 0.059 1.3E-06 47.8 -0.2 56 27-84 68-123 (244)
45 PRK14088 dnaA chromosomal repl 91.1 0.063 1.4E-06 51.7 -0.0 56 25-84 99-154 (440)
46 PRK05642 DNA replication initi 91.0 0.11 2.4E-06 45.6 1.4 51 25-82 13-67 (234)
47 PRK08727 hypothetical protein; 90.4 0.091 2E-06 46.0 0.3 25 61-85 42-66 (233)
48 PRK00149 dnaA chromosomal repl 90.2 0.095 2.1E-06 50.5 0.3 57 25-84 116-172 (450)
49 TIGR00362 DnaA chromosomal rep 89.9 0.094 2E-06 49.7 0.1 56 26-84 105-160 (405)
50 PRK06835 DNA replication prote 89.8 0.14 3.1E-06 47.4 1.1 37 49-86 173-209 (329)
51 PRK00411 cdc6 cell division co 89.8 0.074 1.6E-06 49.9 -0.8 22 58-79 53-74 (394)
52 TIGR02538 type_IV_pilB type IV 89.7 0.12 2.5E-06 51.5 0.5 32 51-82 307-338 (564)
53 PRK09087 hypothetical protein; 89.6 0.045 9.8E-07 47.8 -2.3 48 25-78 15-62 (226)
54 PF01695 IstB_IS21: IstB-like 88.9 0.16 3.5E-06 42.7 0.7 26 61-86 48-73 (178)
55 cd00046 DEXDc DEAD-like helica 88.8 0.12 2.7E-06 39.5 -0.1 25 63-87 3-27 (144)
56 PRK10436 hypothetical protein; 88.7 0.14 3E-06 49.6 0.2 31 51-81 209-239 (462)
57 PRK08181 transposase; Validate 88.7 0.16 3.5E-06 45.6 0.6 28 57-86 105-132 (269)
58 TIGR03420 DnaA_homol_Hda DnaA 88.3 0.24 5.3E-06 42.5 1.5 53 26-84 10-62 (226)
59 COG5008 PilU Tfp pilus assembl 88.2 0.16 3.6E-06 45.5 0.3 55 26-80 83-147 (375)
60 TIGR02533 type_II_gspE general 88.1 0.16 3.5E-06 49.5 0.2 32 51-82 233-264 (486)
61 PRK08903 DnaA regulatory inact 87.7 0.17 3.6E-06 43.8 0.1 53 25-82 12-64 (227)
62 PRK08939 primosomal protein Dn 87.7 0.12 2.6E-06 47.3 -0.9 46 39-85 135-181 (306)
63 cd00009 AAA The AAA+ (ATPases 87.6 0.15 3.2E-06 39.5 -0.3 30 49-78 8-37 (151)
64 PF13245 AAA_19: Part of AAA d 87.5 0.19 4.1E-06 36.2 0.2 23 63-85 13-35 (76)
65 TIGR02782 TrbB_P P-type conjug 87.4 0.22 4.7E-06 45.5 0.6 37 44-81 117-153 (299)
66 COG1484 DnaC DNA replication p 86.8 0.21 4.6E-06 44.5 0.2 56 27-85 75-130 (254)
67 PF00270 DEAD: DEAD/DEAH box h 86.4 0.29 6.3E-06 39.6 0.8 37 50-91 6-42 (169)
68 PF01935 DUF87: Domain of unkn 86.1 0.25 5.4E-06 42.8 0.3 21 65-85 28-48 (229)
69 TIGR01420 pilT_fam pilus retra 86.1 0.21 4.5E-06 46.4 -0.3 32 50-81 112-143 (343)
70 TIGR02525 plasmid_TraJ plasmid 85.9 0.29 6.2E-06 46.1 0.6 31 51-82 141-171 (372)
71 TIGR02524 dot_icm_DotB Dot/Icm 85.7 0.22 4.8E-06 46.6 -0.2 28 54-81 128-155 (358)
72 smart00382 AAA ATPases associa 85.4 0.18 3.9E-06 38.5 -0.9 21 62-82 4-24 (148)
73 COG1474 CDC6 Cdc6-related prot 85.4 0.22 4.7E-06 46.8 -0.5 27 52-78 33-60 (366)
74 PF00437 T2SE: Type II/IV secr 85.2 0.26 5.7E-06 43.8 -0.0 32 49-81 117-148 (270)
75 cd01129 PulE-GspE PulE/GspE Th 85.2 0.32 6.8E-06 43.6 0.5 32 51-82 71-102 (264)
76 PRK14087 dnaA chromosomal repl 85.0 0.28 6.1E-06 47.4 0.1 52 27-81 111-162 (450)
77 PRK13833 conjugal transfer pro 84.9 0.35 7.7E-06 44.6 0.7 33 49-82 134-166 (323)
78 PF12846 AAA_10: AAA-like doma 84.7 0.27 5.8E-06 43.7 -0.2 20 62-81 3-22 (304)
79 KOG0729|consensus 84.1 0.68 1.5E-05 41.7 2.1 33 62-94 213-268 (435)
80 PF13401 AAA_22: AAA domain; P 83.8 0.17 3.7E-06 39.3 -1.6 20 60-79 4-23 (131)
81 PRK13900 type IV secretion sys 83.5 0.36 7.8E-06 44.8 0.1 31 49-80 150-180 (332)
82 PRK12422 chromosomal replicati 83.5 0.35 7.5E-06 46.7 0.0 57 25-84 105-165 (445)
83 PRK13894 conjugal transfer ATP 83.5 0.37 8.1E-06 44.4 0.2 34 48-82 137-170 (319)
84 cd01131 PilT Pilus retraction 83.4 0.28 6.1E-06 41.8 -0.6 20 61-80 2-21 (198)
85 COG0593 DnaA ATPase involved i 83.1 0.28 6E-06 46.7 -0.8 51 25-78 81-131 (408)
86 PF01580 FtsK_SpoIIIE: FtsK/Sp 83.0 0.33 7.2E-06 41.2 -0.3 23 62-84 40-62 (205)
87 PF00910 RNA_helicase: RNA hel 82.9 0.43 9.4E-06 36.4 0.3 26 63-88 1-26 (107)
88 PF13086 AAA_11: AAA domain; P 82.6 0.44 9.6E-06 40.4 0.3 35 51-86 9-43 (236)
89 cd01130 VirB11-like_ATPase Typ 82.5 0.34 7.4E-06 40.7 -0.5 31 47-78 13-43 (186)
90 KOG2543|consensus 82.4 0.41 9E-06 44.9 0.0 15 63-77 33-47 (438)
91 PF13604 AAA_30: AAA domain; P 82.3 0.5 1.1E-05 40.2 0.5 31 50-80 8-38 (196)
92 PRK13851 type IV secretion sys 82.2 0.4 8.8E-06 44.6 -0.1 33 48-81 151-183 (344)
93 PRK06921 hypothetical protein; 81.9 0.4 8.6E-06 43.0 -0.3 27 60-86 117-143 (266)
94 PF11044 TMEMspv1-c74-12: Plec 81.4 0.97 2.1E-05 28.8 1.4 19 258-276 30-48 (49)
95 COG1222 RPT1 ATP-dependent 26S 81.3 0.61 1.3E-05 43.5 0.7 54 41-94 161-242 (406)
96 PF13191 AAA_16: AAA ATPase do 80.8 0.71 1.5E-05 37.9 0.9 39 49-87 13-51 (185)
97 PRK09183 transposase/IS protei 80.2 0.75 1.6E-05 41.0 0.9 26 57-84 101-126 (259)
98 PF01637 Arch_ATPase: Archaeal 79.6 0.41 8.8E-06 40.7 -1.0 30 49-78 9-38 (234)
99 PF00004 AAA: ATPase family as 79.3 0.32 6.9E-06 37.5 -1.6 15 63-77 1-15 (132)
100 TIGR03015 pepcterm_ATPase puta 79.0 0.57 1.2E-05 41.3 -0.2 19 60-78 43-61 (269)
101 PF13479 AAA_24: AAA domain 78.3 0.39 8.4E-06 41.4 -1.5 18 61-78 4-21 (213)
102 smart00487 DEXDc DEAD-like hel 77.8 0.91 2E-05 36.9 0.7 34 51-85 16-49 (201)
103 PF05673 DUF815: Protein of un 77.8 0.52 1.1E-05 41.8 -0.9 50 53-112 44-94 (249)
104 TIGR03499 FlhF flagellar biosy 77.8 0.71 1.5E-05 41.7 -0.0 24 62-85 196-219 (282)
105 COG1201 Lhr Lhr-like helicases 77.7 0.96 2.1E-05 46.7 0.9 52 50-106 29-86 (814)
106 KOG0989|consensus 77.7 0.79 1.7E-05 41.9 0.2 37 41-77 37-74 (346)
107 PRK11448 hsdR type I restricti 77.1 1.1 2.4E-05 48.2 1.1 36 50-86 424-459 (1123)
108 KOG1803|consensus 77.0 1.5 3.3E-05 43.4 2.0 33 51-84 193-225 (649)
109 PF00448 SRP54: SRP54-type pro 77.0 0.74 1.6E-05 39.3 -0.1 22 63-84 4-25 (196)
110 PF00580 UvrD-helicase: UvrD/R 76.2 0.82 1.8E-05 40.8 -0.1 30 59-91 12-41 (315)
111 PRK03992 proteasome-activating 76.1 0.44 9.5E-06 45.1 -1.9 18 61-78 166-183 (389)
112 COG1223 Predicted ATPase (AAA+ 76.1 1.4 3E-05 39.7 1.3 33 62-94 153-208 (368)
113 PRK12402 replication factor C 75.8 0.8 1.7E-05 41.8 -0.3 24 57-80 33-56 (337)
114 COG4962 CpaF Flp pilus assembl 75.3 0.72 1.6E-05 42.8 -0.7 30 48-78 162-191 (355)
115 PF13207 AAA_17: AAA domain; P 75.3 0.58 1.3E-05 35.8 -1.1 14 63-76 2-15 (121)
116 PF13671 AAA_33: AAA domain; P 75.3 0.63 1.4E-05 36.7 -1.0 16 63-78 2-17 (143)
117 PRK13764 ATPase; Provisional 74.5 1 2.2E-05 45.1 0.1 24 61-84 258-281 (602)
118 PHA00729 NTP-binding motif con 73.9 1.3 2.9E-05 38.7 0.7 37 49-85 6-42 (226)
119 PHA02544 44 clamp loader, smal 73.4 0.81 1.7E-05 41.5 -0.9 52 29-80 10-63 (316)
120 PTZ00112 origin recognition co 72.7 0.83 1.8E-05 47.6 -1.0 32 50-81 769-802 (1164)
121 cd01127 TrwB Bacterial conjuga 72.6 1.2 2.5E-05 42.5 -0.0 24 61-84 43-66 (410)
122 TIGR02788 VirB11 P-type DNA tr 72.1 1.2 2.6E-05 40.7 -0.1 29 49-78 134-162 (308)
123 PF02562 PhoH: PhoH-like prote 71.9 1.2 2.6E-05 38.5 -0.1 20 59-78 18-37 (205)
124 PF10236 DAP3: Mitochondrial r 71.8 1.7 3.6E-05 39.9 0.8 28 57-84 20-47 (309)
125 cd00268 DEADc DEAD-box helicas 71.8 1.8 3.9E-05 36.3 1.0 26 49-76 27-52 (203)
126 KOG0735|consensus 70.3 1.5 3.2E-05 44.5 0.1 20 59-78 700-719 (952)
127 PF02456 Adeno_IVa2: Adenoviru 70.1 1.1 2.5E-05 41.0 -0.6 15 64-78 91-105 (369)
128 PF05970 PIF1: PIF1-like helic 70.1 0.68 1.5E-05 43.3 -2.2 38 37-78 3-40 (364)
129 PF03215 Rad17: Rad17 cell cyc 69.5 1.3 2.8E-05 43.7 -0.5 31 48-78 31-63 (519)
130 PRK12723 flagellar biosynthesi 69.4 1.3 2.9E-05 41.9 -0.4 23 60-82 174-196 (388)
131 PF07728 AAA_5: AAA domain (dy 69.2 0.83 1.8E-05 36.1 -1.6 15 63-77 2-16 (139)
132 TIGR00376 DNA helicase, putati 69.2 2.1 4.5E-05 43.3 0.9 20 63-82 176-195 (637)
133 KOG0741|consensus 69.2 2.9 6.4E-05 41.1 1.9 48 62-114 258-310 (744)
134 PRK14722 flhF flagellar biosyn 69.0 1.5 3.3E-05 41.3 -0.1 25 60-84 137-161 (374)
135 KOG0953|consensus 68.9 1.6 3.6E-05 42.9 0.1 47 63-116 194-248 (700)
136 PF07724 AAA_2: AAA domain (Cd 68.8 0.76 1.6E-05 38.3 -1.9 15 62-76 5-19 (171)
137 KOG0727|consensus 68.5 1.2 2.6E-05 39.8 -0.8 60 35-94 159-246 (408)
138 TIGR00348 hsdR type I site-spe 68.4 2.4 5.2E-05 43.1 1.1 37 48-85 247-288 (667)
139 PRK06547 hypothetical protein; 68.3 1.7 3.6E-05 36.3 -0.0 29 50-78 5-33 (172)
140 PLN00020 ribulose bisphosphate 67.9 2.6 5.6E-05 39.9 1.2 72 26-105 110-185 (413)
141 PF13238 AAA_18: AAA domain; P 67.7 1.2 2.5E-05 34.1 -1.0 18 63-80 1-18 (129)
142 TIGR02903 spore_lon_C ATP-depe 67.6 1 2.2E-05 45.3 -1.6 43 28-78 151-193 (615)
143 COG1219 ClpX ATP-dependent pro 67.5 2.6 5.7E-05 38.9 1.1 16 61-76 98-113 (408)
144 PF05729 NACHT: NACHT domain 67.2 1.6 3.6E-05 34.8 -0.2 25 63-87 3-27 (166)
145 PF10412 TrwB_AAD_bind: Type I 67.1 1.7 3.7E-05 41.0 -0.2 40 62-105 17-59 (386)
146 cd01120 RecA-like_NTPases RecA 67.0 1.8 4E-05 34.2 -0.0 22 63-84 2-23 (165)
147 PLN03025 replication factor C 66.6 2.6 5.7E-05 38.5 1.0 22 61-82 35-56 (319)
148 PRK11331 5-methylcytosine-spec 66.0 2.3 5E-05 41.1 0.5 32 45-78 181-212 (459)
149 COG4096 HsdR Type I site-speci 65.8 4.8 0.0001 41.5 2.6 38 48-86 174-211 (875)
150 PRK11776 ATP-dependent RNA hel 65.7 2.4 5.2E-05 40.8 0.6 25 50-76 33-57 (460)
151 KOG2373|consensus 65.7 3.7 7.9E-05 38.4 1.7 28 50-78 261-291 (514)
152 PRK04296 thymidine kinase; Pro 64.8 1.9 4.2E-05 36.4 -0.3 24 63-86 5-28 (190)
153 TIGR02881 spore_V_K stage V sp 64.7 1.4 3E-05 39.1 -1.2 20 61-80 43-62 (261)
154 PF13555 AAA_29: P-loop contai 64.6 1.3 2.9E-05 30.6 -1.1 14 64-77 27-40 (62)
155 KOG0739|consensus 64.5 1.5 3.3E-05 40.2 -1.0 66 29-94 131-223 (439)
156 PF06414 Zeta_toxin: Zeta toxi 64.5 1.7 3.6E-05 36.9 -0.7 23 60-82 15-37 (199)
157 COG1125 OpuBA ABC-type proline 63.9 1.8 3.8E-05 38.9 -0.7 13 66-78 33-45 (309)
158 PF07693 KAP_NTPase: KAP famil 63.7 1.6 3.4E-05 39.6 -1.1 20 58-77 18-37 (325)
159 PTZ00454 26S protease regulato 63.5 2.5 5.5E-05 40.2 0.2 18 61-78 180-197 (398)
160 PF06309 Torsin: Torsin; Inte 63.1 0.66 1.4E-05 36.9 -3.2 46 65-114 58-114 (127)
161 PRK05986 cob(I)alamin adenolsy 62.9 2.2 4.8E-05 36.4 -0.3 27 61-87 23-49 (191)
162 PRK09361 radB DNA repair and r 62.6 2.9 6.3E-05 35.9 0.5 35 48-82 8-45 (225)
163 PTZ00424 helicase 45; Provisio 62.5 2.9 6.4E-05 39.1 0.5 27 49-77 56-82 (401)
164 PRK05703 flhF flagellar biosyn 62.4 2.4 5.1E-05 40.7 -0.2 24 62-85 223-246 (424)
165 PF03193 DUF258: Protein of un 62.3 1.7 3.8E-05 36.0 -1.0 31 50-82 27-57 (161)
166 PRK04328 hypothetical protein; 62.1 2.7 5.9E-05 37.1 0.2 27 49-75 9-38 (249)
167 TIGR01618 phage_P_loop phage n 61.9 1.5 3.3E-05 38.2 -1.5 18 61-78 13-30 (220)
168 TIGR02237 recomb_radB DNA repa 61.6 2.2 4.7E-05 36.2 -0.5 19 60-78 12-30 (209)
169 PRK13342 recombination factor 61.5 1.7 3.7E-05 41.4 -1.3 23 57-79 33-55 (413)
170 COG1419 FlhF Flagellar GTP-bin 61.4 3.8 8.2E-05 38.9 1.0 45 41-85 180-228 (407)
171 PRK11192 ATP-dependent RNA hel 61.4 3.2 6.9E-05 39.5 0.5 26 49-76 29-54 (434)
172 TIGR01242 26Sp45 26S proteasom 61.3 1.7 3.6E-05 40.6 -1.4 17 62-78 158-174 (364)
173 TIGR02639 ClpA ATP-dependent C 61.2 3.9 8.4E-05 42.0 1.1 39 48-86 191-229 (731)
174 KOG0335|consensus 61.2 3.1 6.7E-05 40.3 0.4 20 56-77 109-128 (482)
175 TIGR00631 uvrb excinuclease AB 60.8 1.5 3.2E-05 44.5 -1.9 50 28-82 2-51 (655)
176 PRK01297 ATP-dependent RNA hel 60.6 3.4 7.3E-05 40.0 0.5 26 49-76 115-140 (475)
177 COG3598 RepA RecA-family ATPas 60.5 2.5 5.4E-05 39.1 -0.4 76 32-109 62-142 (402)
178 PRK11131 ATP-dependent RNA hel 60.4 4.1 8.9E-05 44.3 1.1 40 41-87 73-112 (1294)
179 PF00063 Myosin_head: Myosin h 60.3 3.1 6.7E-05 42.4 0.2 36 42-78 67-103 (689)
180 KOG0726|consensus 60.3 3.4 7.5E-05 37.8 0.5 33 62-94 221-276 (440)
181 PTZ00361 26 proteosome regulat 60.2 3.1 6.8E-05 40.1 0.2 17 62-78 219-235 (438)
182 PRK06067 flagellar accessory p 60.1 3.5 7.6E-05 35.8 0.5 34 48-81 10-46 (234)
183 TIGR01241 FtsH_fam ATP-depende 59.9 2.7 5.9E-05 41.0 -0.2 19 62-80 90-108 (495)
184 PRK00440 rfc replication facto 59.9 2.7 5.8E-05 37.9 -0.3 24 57-80 35-58 (319)
185 TIGR03744 traC_PFL_4706 conjug 59.9 3 6.5E-05 43.9 0.0 28 59-86 474-501 (893)
186 PRK04837 ATP-dependent RNA hel 59.9 3.5 7.5E-05 39.2 0.5 25 50-76 37-61 (423)
187 cd01123 Rad51_DMC1_radA Rad51_ 59.5 3 6.6E-05 35.9 0.0 30 49-78 5-37 (235)
188 KOG0652|consensus 59.5 4.2 9E-05 36.7 0.9 14 62-75 207-220 (424)
189 PRK04195 replication factor C 59.0 2.8 6.1E-05 40.7 -0.3 30 49-78 27-57 (482)
190 PRK10536 hypothetical protein; 58.6 3 6.4E-05 37.4 -0.2 20 61-80 75-94 (262)
191 PRK10590 ATP-dependent RNA hel 58.2 4.1 8.8E-05 39.3 0.6 27 49-77 29-55 (456)
192 KOG3859|consensus 57.5 2.7 5.8E-05 38.1 -0.7 34 45-78 26-60 (406)
193 TIGR00635 ruvB Holliday juncti 57.4 1.9 4.2E-05 38.8 -1.7 17 62-78 32-48 (305)
194 COG2256 MGS1 ATPase related to 57.1 3 6.5E-05 39.6 -0.4 54 39-94 28-81 (436)
195 TIGR00708 cobA cob(I)alamin ad 57.1 3.1 6.8E-05 34.9 -0.3 27 61-87 6-32 (173)
196 TIGR02640 gas_vesic_GvpN gas v 56.9 4.4 9.6E-05 36.0 0.6 30 47-78 10-39 (262)
197 TIGR02746 TraC-F-type type-IV 56.9 3.5 7.5E-05 42.6 -0.1 25 60-84 430-454 (797)
198 PF02534 T4SS-DNA_transf: Type 56.7 4.4 9.5E-05 39.0 0.6 23 61-85 45-67 (469)
199 PF05496 RuvB_N: Holliday junc 56.5 4.4 9.5E-05 35.6 0.5 52 33-86 22-75 (233)
200 TIGR01313 therm_gnt_kin carboh 56.4 2.8 6E-05 34.0 -0.8 13 64-76 2-14 (163)
201 COG0606 Predicted ATPase with 56.1 1.9 4.2E-05 41.6 -1.9 20 63-82 201-223 (490)
202 cd00561 CobA_CobO_BtuR ATP:cor 56.0 3.7 8.1E-05 33.9 -0.0 27 61-87 3-29 (159)
203 TIGR03819 heli_sec_ATPase heli 55.9 4.1 8.9E-05 37.9 0.2 32 46-78 165-196 (340)
204 TIGR01359 UMP_CMP_kin_fam UMP- 55.9 2.8 6E-05 34.6 -0.8 14 63-76 2-15 (183)
205 cd02021 GntK Gluconate kinase 55.6 2.8 6E-05 33.5 -0.9 14 63-76 2-15 (150)
206 PRK13767 ATP-dependent helicas 55.4 4.9 0.00011 42.2 0.7 26 51-78 40-65 (876)
207 PRK12726 flagellar biosynthesi 55.2 3.9 8.6E-05 38.8 -0.0 22 62-83 208-229 (407)
208 cd01126 TraG_VirD4 The TraG/Tr 55.2 4.7 0.0001 37.9 0.5 21 63-85 2-22 (384)
209 cd01124 KaiC KaiC is a circadi 55.2 3.8 8.3E-05 33.7 -0.1 16 63-78 2-17 (187)
210 TIGR03881 KaiC_arch_4 KaiC dom 55.1 4.6 0.0001 34.7 0.4 33 50-82 7-42 (229)
211 cd01393 recA_like RecA is a b 55.1 5.1 0.00011 34.3 0.7 34 48-81 4-40 (226)
212 PRK07261 topology modulation p 55.0 2.9 6.3E-05 34.6 -0.9 14 63-76 3-16 (171)
213 PF00735 Septin: Septin; Inte 54.8 2.9 6.3E-05 37.8 -0.9 20 57-76 1-20 (281)
214 PHA02244 ATPase-like protein 54.5 4.9 0.00011 37.9 0.5 36 41-78 102-137 (383)
215 CHL00081 chlI Mg-protoporyphyr 54.4 5.4 0.00012 37.3 0.8 46 27-80 13-58 (350)
216 PRK00080 ruvB Holliday junctio 54.4 2.4 5.3E-05 38.9 -1.5 18 61-78 52-69 (328)
217 PRK00131 aroK shikimate kinase 54.3 2.9 6.3E-05 33.9 -1.0 17 62-78 6-22 (175)
218 smart00242 MYSc Myosin. Large 54.1 5.9 0.00013 40.4 1.0 37 41-78 73-110 (677)
219 PRK05580 primosome assembly pr 54.0 5.3 0.00012 40.7 0.7 18 61-78 163-180 (679)
220 PRK08118 topology modulation p 53.6 3.1 6.8E-05 34.3 -0.8 13 63-75 4-16 (167)
221 PF12775 AAA_7: P-loop contain 53.5 4.3 9.3E-05 36.5 -0.0 28 50-78 24-51 (272)
222 PF13476 AAA_23: AAA domain; P 53.5 3.3 7.2E-05 34.2 -0.7 15 63-77 22-36 (202)
223 TIGR00614 recQ_fam ATP-depende 53.4 6 0.00013 38.3 0.9 26 49-76 17-42 (470)
224 COG0630 VirB11 Type IV secreto 53.4 3.4 7.3E-05 38.0 -0.8 21 62-82 145-165 (312)
225 cd02025 PanK Pantothenate kina 53.3 3.1 6.8E-05 36.0 -1.0 12 67-78 6-17 (220)
226 COG1220 HslU ATP-dependent pro 53.2 4.1 9E-05 38.0 -0.2 55 63-117 53-139 (444)
227 TIGR01389 recQ ATP-dependent D 53.0 6.1 0.00013 39.4 0.9 27 49-77 19-45 (591)
228 COG3842 PotA ABC-type spermidi 52.9 3.3 7.1E-05 38.7 -1.0 14 65-78 36-49 (352)
229 PF06048 DUF927: Domain of unk 52.9 3.2 6.9E-05 37.5 -1.0 29 49-78 183-211 (286)
230 KOG0736|consensus 52.8 5 0.00011 41.2 0.3 17 60-76 705-721 (953)
231 cd01394 radB RadB. The archaea 52.5 5.4 0.00012 34.0 0.4 33 49-81 5-40 (218)
232 KOG0330|consensus 52.5 6 0.00013 37.4 0.7 26 50-77 90-115 (476)
233 PRK10416 signal recognition pa 52.5 4.6 9.9E-05 37.2 -0.1 20 61-80 115-134 (318)
234 PLN00206 DEAD-box ATP-dependen 52.4 6.1 0.00013 38.8 0.8 25 50-76 150-174 (518)
235 PHA02653 RNA helicase NPH-II; 52.3 6.1 0.00013 40.3 0.8 25 51-77 172-196 (675)
236 KOG0730|consensus 52.2 3.8 8.2E-05 41.1 -0.6 41 237-277 649-689 (693)
237 TIGR02688 conserved hypothetic 52.0 6.3 0.00014 37.9 0.8 25 57-83 208-232 (449)
238 PRK11034 clpA ATP-dependent Cl 51.9 7 0.00015 40.4 1.2 26 61-86 208-233 (758)
239 cd01383 MYSc_type_VIII Myosin 51.9 5.5 0.00012 40.6 0.4 36 42-78 74-110 (677)
240 cd01381 MYSc_type_VII Myosin m 51.8 5.4 0.00012 40.6 0.4 36 42-78 68-104 (671)
241 cd00464 SK Shikimate kinase (S 51.6 3.5 7.6E-05 32.8 -0.9 16 62-77 1-16 (154)
242 KOG0926|consensus 51.4 4.7 0.0001 41.6 -0.2 19 60-78 271-289 (1172)
243 PF13173 AAA_14: AAA domain 51.2 2.8 6.1E-05 32.7 -1.4 20 62-81 4-23 (128)
244 CHL00181 cbbX CbbX; Provisiona 51.1 3.7 8E-05 37.2 -0.9 16 63-78 62-77 (287)
245 PRK11634 ATP-dependent RNA hel 51.1 6.1 0.00013 39.9 0.6 25 51-77 36-60 (629)
246 TIGR00595 priA primosomal prot 51.1 5.8 0.00012 39.0 0.4 15 64-78 1-15 (505)
247 cd02023 UMPK Uridine monophosp 51.0 3.6 7.7E-05 34.6 -0.9 13 65-77 4-16 (198)
248 TIGR01650 PD_CobS cobaltochela 51.0 9.5 0.00021 35.3 1.8 37 38-76 43-80 (327)
249 cd00820 PEPCK_HprK Phosphoenol 50.7 3.6 7.9E-05 31.7 -0.8 15 63-77 18-32 (107)
250 cd01384 MYSc_type_XI Myosin mo 50.3 7.9 0.00017 39.5 1.2 36 42-78 70-106 (674)
251 cd01428 ADK Adenylate kinase ( 50.2 3.9 8.4E-05 33.9 -0.8 15 63-77 2-16 (194)
252 PF00158 Sigma54_activat: Sigm 50.1 3.6 7.9E-05 34.1 -1.0 48 57-109 19-66 (168)
253 TIGR02322 phosphon_PhnN phosph 49.8 4.1 9E-05 33.5 -0.7 18 63-80 4-21 (179)
254 COG1136 SalX ABC-type antimicr 49.6 3.9 8.4E-05 35.8 -0.9 15 64-78 35-49 (226)
255 smart00763 AAA_PrkA PrkA AAA d 49.5 6.1 0.00013 37.1 0.3 19 59-77 77-95 (361)
256 cd01385 MYSc_type_IX Myosin mo 49.4 8.1 0.00017 39.5 1.2 36 42-78 76-112 (692)
257 PRK15483 type III restriction- 49.0 6.9 0.00015 41.3 0.6 14 68-81 67-80 (986)
258 cd01377 MYSc_type_II Myosin mo 49.0 5.1 0.00011 40.9 -0.3 37 41-78 72-109 (693)
259 PHA02624 large T antigen; Prov 49.0 6.1 0.00013 39.6 0.2 32 49-80 418-451 (647)
260 cd01387 MYSc_type_XV Myosin mo 48.9 9.8 0.00021 38.8 1.7 36 42-78 69-105 (677)
261 cd00124 MYSc Myosin motor doma 48.9 7.5 0.00016 39.6 0.8 37 41-78 67-104 (679)
262 PRK04537 ATP-dependent RNA hel 48.8 7 0.00015 39.0 0.6 26 50-77 38-63 (572)
263 PRK06995 flhF flagellar biosyn 48.8 5.6 0.00012 38.8 -0.1 22 61-82 257-278 (484)
264 PF04548 AIG1: AIG1 family; I 48.7 4.1 8.8E-05 35.0 -1.0 19 62-80 2-20 (212)
265 KOG0354|consensus 48.7 9.6 0.00021 39.0 1.5 45 31-78 44-94 (746)
266 PRK14531 adenylate kinase; Pro 48.7 4.2 9.2E-05 33.9 -0.8 14 63-76 5-18 (183)
267 cd01378 MYSc_type_I Myosin mot 48.5 9 0.00019 39.1 1.3 36 42-78 68-104 (674)
268 TIGR03689 pup_AAA proteasome A 48.5 3.8 8.2E-05 40.3 -1.3 17 62-78 218-234 (512)
269 TIGR03743 SXT_TraD conjugative 48.5 5.9 0.00013 40.1 -0.0 26 61-86 177-202 (634)
270 TIGR01967 DEAH_box_HrpA ATP-de 48.3 9.1 0.0002 41.8 1.4 40 41-87 66-105 (1283)
271 KOG0161|consensus 48.3 8.7 0.00019 43.4 1.3 30 183-212 227-256 (1930)
272 cd01382 MYSc_type_VI Myosin mo 48.1 8.2 0.00018 39.6 1.0 35 43-78 74-109 (717)
273 KOG2721|consensus 48.1 10 0.00023 32.8 1.4 56 15-70 14-70 (260)
274 TIGR00064 ftsY signal recognit 47.8 5.2 0.00011 35.9 -0.4 21 61-81 73-93 (272)
275 CHL00195 ycf46 Ycf46; Provisio 47.8 3.7 8E-05 40.1 -1.5 17 61-77 260-276 (489)
276 PRK13341 recombination factor 47.8 4 8.6E-05 41.9 -1.3 24 57-80 49-72 (725)
277 cd01380 MYSc_type_V Myosin mot 47.7 6 0.00013 40.4 -0.1 35 43-78 69-104 (691)
278 COG3839 MalK ABC-type sugar tr 47.7 4.4 9.5E-05 37.7 -0.9 15 64-78 33-47 (338)
279 COG3829 RocR Transcriptional r 47.5 3.6 7.8E-05 40.4 -1.6 65 25-102 239-305 (560)
280 cd01983 Fer4_NifH The Fer4_Nif 47.5 6.1 0.00013 28.0 -0.0 20 64-83 3-22 (99)
281 TIGR01243 CDC48 AAA family ATP 47.4 6.1 0.00013 40.6 -0.1 17 62-78 489-505 (733)
282 KOG0340|consensus 47.3 9.3 0.0002 35.8 1.1 27 49-77 35-61 (442)
283 cd03274 ABC_SMC4_euk Eukaryoti 47.2 4.6 9.9E-05 34.8 -0.9 16 65-80 30-45 (212)
284 PRK06217 hypothetical protein; 47.0 4.6 0.0001 33.6 -0.9 14 63-76 4-17 (183)
285 COG1702 PhoH Phosphate starvat 47.0 3.8 8.3E-05 38.0 -1.4 36 149-185 226-261 (348)
286 PRK00771 signal recognition pa 46.7 6.1 0.00013 38.1 -0.2 22 60-81 95-116 (437)
287 smart00488 DEXDc2 DEAD-like he 46.6 7.2 0.00016 35.3 0.3 36 37-78 10-45 (289)
288 smart00489 DEXDc3 DEAD-like he 46.6 7.2 0.00016 35.3 0.3 36 37-78 10-45 (289)
289 TIGR02759 TraD_Ftype type IV c 46.6 6.5 0.00014 39.2 -0.0 25 63-91 179-203 (566)
290 TIGR02880 cbbX_cfxQ probable R 46.5 4.8 0.0001 36.3 -0.9 17 62-78 60-76 (284)
291 PRK13700 conjugal transfer pro 46.4 6.7 0.00015 40.1 0.0 41 63-107 188-232 (732)
292 TIGR03817 DECH_helic helicase/ 46.3 7.6 0.00016 40.0 0.4 26 49-76 42-67 (742)
293 TIGR02030 BchI-ChlI magnesium 46.2 5.4 0.00012 37.0 -0.6 31 48-78 13-43 (337)
294 PRK06696 uridine kinase; Valid 45.8 7.3 0.00016 33.6 0.2 30 48-77 7-39 (223)
295 COG5019 CDC3 Septin family pro 45.8 5.9 0.00013 37.1 -0.4 21 57-77 20-40 (373)
296 TIGR03880 KaiC_arch_3 KaiC dom 45.7 7.7 0.00017 33.3 0.3 30 51-80 4-36 (224)
297 PRK11057 ATP-dependent DNA hel 45.6 8.8 0.00019 38.5 0.8 26 49-76 31-56 (607)
298 cd00983 recA RecA is a bacter 45.6 9.3 0.0002 35.4 0.8 33 46-78 37-73 (325)
299 TIGR03346 chaperone_ClpB ATP-d 45.5 9.4 0.0002 40.0 1.0 39 48-86 182-220 (852)
300 PRK12727 flagellar biosynthesi 45.4 6.7 0.00014 38.8 -0.1 24 62-85 352-375 (559)
301 PTZ00301 uridine kinase; Provi 45.3 6.1 0.00013 34.1 -0.4 17 66-82 9-25 (210)
302 cd01850 CDC_Septin CDC/Septin. 45.2 3.7 8.1E-05 36.9 -1.8 20 57-76 1-20 (276)
303 PRK08233 hypothetical protein; 45.0 5.2 0.00011 32.8 -0.9 15 64-78 7-21 (182)
304 PF12774 AAA_6: Hydrolytic ATP 45.0 5.7 0.00012 34.8 -0.6 15 64-78 36-50 (231)
305 PHA01747 putative ATP-dependen 44.9 5 0.00011 37.8 -1.0 29 49-77 179-207 (425)
306 PRK01172 ski2-like helicase; P 44.8 8.4 0.00018 39.1 0.5 26 49-76 28-53 (674)
307 PF03668 ATP_bind_2: P-loop AT 44.8 8.1 0.00017 35.0 0.3 27 63-89 4-45 (284)
308 TIGR00176 mobB molybdopterin-g 44.8 8 0.00017 31.6 0.3 20 65-84 4-23 (155)
309 PRK10865 protein disaggregatio 44.7 9.3 0.0002 40.1 0.8 39 48-86 187-225 (857)
310 TIGR03877 thermo_KaiC_1 KaiC d 44.6 7.8 0.00017 33.8 0.2 26 50-75 8-36 (237)
311 CHL00176 ftsH cell division pr 44.5 7.8 0.00017 39.2 0.2 17 62-78 218-234 (638)
312 TIGR00929 VirB4_CagE type IV s 44.3 6 0.00013 40.7 -0.7 26 60-85 434-459 (785)
313 TIGR01360 aden_kin_iso1 adenyl 44.3 5.5 0.00012 32.8 -0.8 16 63-78 6-21 (188)
314 PRK10917 ATP-dependent DNA hel 44.3 11 0.00023 38.5 1.1 22 57-78 279-300 (681)
315 PRK11545 gntK gluconate kinase 44.1 7.4 0.00016 31.9 -0.1 13 66-78 1-13 (163)
316 KOG0742|consensus 44.1 8 0.00017 37.1 0.2 14 62-75 386-399 (630)
317 PRK06762 hypothetical protein; 44.1 5.1 0.00011 32.5 -1.0 14 63-76 5-18 (166)
318 PRK14974 cell division protein 43.9 7.1 0.00015 36.3 -0.2 23 60-82 140-162 (336)
319 TIGR02768 TraA_Ti Ti-type conj 43.8 7.4 0.00016 40.1 -0.1 30 50-80 359-388 (744)
320 CHL00095 clpC Clp protease ATP 43.7 11 0.00024 39.3 1.2 37 49-85 189-225 (821)
321 TIGR03158 cas3_cyano CRISPR-as 43.7 8.9 0.00019 35.7 0.4 26 52-77 6-31 (357)
322 PRK09401 reverse gyrase; Revie 43.7 11 0.00023 41.0 1.1 25 49-75 86-110 (1176)
323 PRK14532 adenylate kinase; Pro 43.4 5.7 0.00012 33.0 -0.8 15 63-77 3-17 (188)
324 COG1122 CbiO ABC-type cobalt t 43.1 3 6.5E-05 36.7 -2.7 18 61-78 31-48 (235)
325 PRK09270 nucleoside triphospha 43.0 5 0.00011 34.8 -1.3 20 58-77 31-50 (229)
326 PRK10876 recB exonuclease V su 42.8 8.4 0.00018 41.9 0.1 19 68-86 25-43 (1181)
327 PF13481 AAA_25: AAA domain; P 42.8 8.5 0.00019 31.9 0.1 23 63-85 35-57 (193)
328 TIGR02902 spore_lonB ATP-depen 42.8 9 0.0002 37.8 0.3 41 28-76 62-102 (531)
329 PF00485 PRK: Phosphoribulokin 42.6 7 0.00015 32.9 -0.4 12 65-76 4-15 (194)
330 PRK11889 flhF flagellar biosyn 42.5 8 0.00017 37.0 -0.1 21 61-81 242-262 (436)
331 TIGR01817 nifA Nif-specific re 42.3 3.4 7.3E-05 40.7 -2.8 45 26-76 191-235 (534)
332 PRK09354 recA recombinase A; P 42.2 8.9 0.00019 35.8 0.2 33 46-78 42-78 (349)
333 PF08477 Miro: Miro-like prote 42.2 7.2 0.00016 29.3 -0.4 14 63-76 2-15 (119)
334 PRK13889 conjugal transfer rel 42.2 6.7 0.00014 41.7 -0.7 29 49-78 352-380 (988)
335 COG0283 Cmk Cytidylate kinase 41.7 11 0.00024 32.8 0.6 24 66-89 10-46 (222)
336 TIGR01613 primase_Cterm phage/ 41.7 5.4 0.00012 36.2 -1.3 27 60-91 76-102 (304)
337 cd02020 CMPK Cytidine monophos 41.4 7.7 0.00017 30.4 -0.3 15 63-77 2-16 (147)
338 TIGR02236 recomb_radA DNA repa 41.4 9.5 0.00021 34.6 0.2 33 48-80 80-115 (310)
339 TIGR02173 cyt_kin_arch cytidyl 41.4 6.3 0.00014 31.8 -0.9 15 63-77 3-17 (171)
340 COG0467 RAD55 RecA-superfamily 41.4 8.8 0.00019 33.8 0.0 25 52-76 12-39 (260)
341 TIGR00643 recG ATP-dependent D 41.3 12 0.00025 37.8 0.9 17 61-77 257-273 (630)
342 PF04466 Terminase_3: Phage te 41.2 8.9 0.00019 36.2 0.0 17 63-79 5-21 (387)
343 PRK04040 adenylate kinase; Pro 41.2 6.4 0.00014 33.2 -0.9 15 63-77 5-19 (188)
344 cd02027 APSK Adenosine 5'-phos 41.1 6.3 0.00014 31.8 -0.9 14 63-76 2-15 (149)
345 TIGR00609 recB exodeoxyribonuc 41.0 9.4 0.0002 41.1 0.2 19 68-86 17-35 (1087)
346 TIGR02397 dnaX_nterm DNA polym 41.0 8.2 0.00018 35.4 -0.3 25 54-78 29-54 (355)
347 PF02367 UPF0079: Uncharacteri 40.9 5.7 0.00012 31.4 -1.1 22 61-82 16-37 (123)
348 TIGR00602 rad24 checkpoint pro 40.9 15 0.00032 37.2 1.5 16 63-78 113-128 (637)
349 PRK14721 flhF flagellar biosyn 40.9 8.5 0.00018 36.9 -0.2 23 61-83 192-214 (420)
350 PRK14729 miaA tRNA delta(2)-is 40.9 8 0.00017 35.4 -0.4 17 62-78 6-22 (300)
351 PRK10867 signal recognition pa 40.8 8.6 0.00019 37.0 -0.2 23 60-82 100-122 (433)
352 PRK14723 flhF flagellar biosyn 40.7 5.5 0.00012 41.0 -1.6 22 61-82 186-207 (767)
353 PRK13850 type IV secretion sys 40.7 13 0.00028 37.9 1.1 27 58-86 137-163 (670)
354 cd03115 SRP The signal recogni 40.7 9 0.0002 31.3 -0.0 18 64-81 4-21 (173)
355 PF00931 NB-ARC: NB-ARC domain 40.5 11 0.00025 33.2 0.6 30 48-77 5-36 (287)
356 KOG0745|consensus 40.5 14 0.0003 35.7 1.1 15 62-76 228-242 (564)
357 TIGR03238 dnd_assoc_3 dnd syst 40.4 8.2 0.00018 37.7 -0.4 18 61-78 33-50 (504)
358 COG1126 GlnQ ABC-type polar am 40.3 6.4 0.00014 34.4 -1.0 13 65-77 33-45 (240)
359 PRK05480 uridine/cytidine kina 40.3 9.5 0.00021 32.3 0.0 16 63-78 9-24 (209)
360 cd01379 MYSc_type_III Myosin m 40.3 8.5 0.00018 39.1 -0.3 35 43-78 69-104 (653)
361 TIGR00231 small_GTP small GTP- 40.2 5.3 0.00012 30.8 -1.5 15 63-77 4-18 (161)
362 PF03205 MobB: Molybdopterin g 40.2 9 0.00019 30.7 -0.1 22 63-84 3-24 (140)
363 TIGR01447 recD exodeoxyribonuc 40.1 9 0.00019 38.4 -0.2 22 64-85 164-185 (586)
364 PRK10078 ribose 1,5-bisphospho 40.0 5.5 0.00012 33.3 -1.5 14 63-76 5-18 (186)
365 PTZ00110 helicase; Provisional 40.0 10 0.00022 37.5 0.2 23 52-76 161-183 (545)
366 PRK11664 ATP-dependent RNA hel 39.9 13 0.00027 38.9 0.9 33 42-77 5-37 (812)
367 cd03271 ABC_UvrA_II The excisi 39.9 14 0.00031 33.0 1.1 24 64-87 25-48 (261)
368 COG1118 CysA ABC-type sulfate/ 39.9 7 0.00015 36.0 -0.9 14 65-78 33-46 (345)
369 PRK10865 protein disaggregatio 39.7 7.2 0.00016 40.9 -0.9 18 61-78 599-616 (857)
370 PRK12724 flagellar biosynthesi 39.6 5.9 0.00013 38.0 -1.4 22 61-82 224-245 (432)
371 PRK03839 putative kinase; Prov 39.6 7 0.00015 32.3 -0.9 13 63-75 3-15 (180)
372 TIGR03263 guanyl_kin guanylate 39.4 8.7 0.00019 31.5 -0.3 14 63-76 4-17 (180)
373 PRK05342 clpX ATP-dependent pr 39.3 7.4 0.00016 37.2 -0.9 17 61-77 109-125 (412)
374 TIGR01351 adk adenylate kinase 39.3 7.3 0.00016 33.2 -0.8 14 63-76 2-15 (210)
375 PLN03137 ATP-dependent DNA hel 39.3 13 0.00028 40.1 0.8 26 49-76 466-491 (1195)
376 COG0444 DppD ABC-type dipeptid 39.1 5.6 0.00012 36.6 -1.6 17 66-82 37-56 (316)
377 PRK14530 adenylate kinase; Pro 39.1 7.3 0.00016 33.3 -0.9 14 63-76 6-19 (215)
378 TIGR03754 conj_TOL_TraD conjug 39.0 10 0.00023 38.3 0.1 24 63-86 183-206 (643)
379 TIGR00554 panK_bact pantothena 39.0 7.1 0.00015 35.5 -1.0 15 63-77 65-79 (290)
380 PRK14970 DNA polymerase III su 39.0 9.2 0.0002 35.6 -0.3 32 49-80 27-59 (367)
381 PRK15424 propionate catabolism 38.8 4.3 9.4E-05 40.2 -2.6 27 57-88 239-265 (538)
382 COG4619 ABC-type uncharacteriz 38.8 15 0.00032 31.2 0.9 14 63-76 32-45 (223)
383 cd01386 MYSc_type_XVIII Myosin 38.7 13 0.00029 38.4 0.8 36 42-78 68-104 (767)
384 TIGR02655 circ_KaiC circadian 38.5 10 0.00022 37.0 -0.1 28 49-76 7-37 (484)
385 KOG0344|consensus 38.5 11 0.00025 37.2 0.3 25 50-76 165-189 (593)
386 cd03276 ABC_SMC6_euk Eukaryoti 38.4 9.4 0.0002 32.4 -0.3 17 65-81 26-42 (198)
387 KOG0728|consensus 38.4 17 0.00037 32.7 1.3 34 61-94 182-238 (404)
388 COG0059 IlvC Ketol-acid reduct 38.4 25 0.00054 32.3 2.4 36 79-114 202-241 (338)
389 PRK05022 anaerobic nitric oxid 38.4 4.8 0.0001 39.5 -2.4 44 57-105 207-250 (509)
390 PRK14701 reverse gyrase; Provi 38.3 15 0.00032 41.3 1.2 30 49-82 85-114 (1638)
391 KOG0348|consensus 38.3 12 0.00025 37.1 0.3 24 51-76 167-190 (708)
392 COG0563 Adk Adenylate kinase a 38.2 7.8 0.00017 32.5 -0.8 15 63-77 3-17 (178)
393 PRK13531 regulatory ATPase Rav 38.2 11 0.00024 36.9 0.1 29 47-77 28-56 (498)
394 cd03270 ABC_UvrA_I The excisio 38.0 9.4 0.0002 33.0 -0.4 19 63-81 24-42 (226)
395 KOG3886|consensus 38.0 16 0.00034 32.5 1.0 19 63-82 7-25 (295)
396 cd00071 GMPK Guanosine monopho 37.9 9.3 0.0002 30.4 -0.4 12 64-75 3-14 (137)
397 TIGR01074 rep ATP-dependent DN 37.9 12 0.00026 37.8 0.4 19 61-79 15-33 (664)
398 PRK06851 hypothetical protein; 37.9 11 0.00025 35.4 0.2 34 51-84 21-54 (367)
399 COG2255 RuvB Holliday junction 37.8 13 0.00028 34.0 0.4 14 63-76 55-68 (332)
400 PF00025 Arf: ADP-ribosylation 37.8 10 0.00023 31.2 -0.1 27 50-76 3-30 (175)
401 PRK13873 conjugal transfer ATP 37.8 11 0.00023 39.4 -0.1 24 62-85 443-466 (811)
402 PF14532 Sigma54_activ_2: Sigm 37.8 7.2 0.00016 30.8 -1.0 19 58-76 19-37 (138)
403 COG0464 SpoVK ATPases of the A 37.6 12 0.00026 36.4 0.3 19 59-77 275-293 (494)
404 PRK15429 formate hydrogenlyase 37.6 4.7 0.0001 41.1 -2.7 20 57-76 396-415 (686)
405 PF06745 KaiC: KaiC; InterPro 37.5 11 0.00023 32.4 -0.1 27 50-76 6-35 (226)
406 COG1137 YhbG ABC-type (unclass 37.5 8 0.00017 33.6 -0.8 14 65-78 35-48 (243)
407 PRK11784 tRNA 2-selenouridine 37.4 8.8 0.00019 35.8 -0.6 18 63-80 144-161 (345)
408 cd00984 DnaB_C DnaB helicase C 37.3 13 0.00027 32.2 0.3 22 63-84 16-37 (242)
409 PRK04301 radA DNA repair and r 37.2 13 0.00029 33.9 0.5 34 48-81 87-123 (317)
410 TIGR01243 CDC48 AAA family ATP 37.2 10 0.00022 38.9 -0.3 18 61-78 213-230 (733)
411 PRK13721 conjugal transfer ATP 37.1 9.7 0.00021 39.8 -0.5 22 61-82 450-471 (844)
412 KOG0390|consensus 36.9 12 0.00027 38.5 0.2 41 39-80 242-283 (776)
413 KOG0743|consensus 36.8 12 0.00025 36.1 0.0 33 226-258 407-441 (457)
414 PRK10820 DNA-binding transcrip 36.8 4.9 0.00011 39.6 -2.6 20 57-76 224-243 (520)
415 PRK08533 flagellar accessory p 36.8 10 0.00022 33.0 -0.3 18 61-78 25-42 (230)
416 COG1131 CcmA ABC-type multidru 36.7 8.2 0.00018 35.0 -1.0 13 66-78 37-49 (293)
417 PHA02774 E1; Provisional 36.7 10 0.00022 38.0 -0.4 31 52-82 424-456 (613)
418 TIGR02012 tigrfam_recA protein 36.6 14 0.0003 34.1 0.5 32 47-78 38-73 (321)
419 TIGR01054 rgy reverse gyrase. 36.6 15 0.00032 40.0 0.8 25 49-75 84-108 (1171)
420 TIGR00959 ffh signal recogniti 36.4 9.4 0.0002 36.7 -0.7 23 60-82 99-121 (428)
421 TIGR02238 recomb_DMC1 meiotic 36.3 14 0.0003 33.9 0.5 32 47-78 80-114 (313)
422 COG3451 VirB4 Type IV secretor 36.2 13 0.00027 38.8 0.2 25 64-88 440-464 (796)
423 cd02019 NK Nucleoside/nucleoti 36.2 10 0.00022 26.2 -0.3 12 65-76 4-15 (69)
424 TIGR03345 VI_ClpV1 type VI sec 36.2 17 0.00037 38.2 1.1 39 48-86 196-234 (852)
425 PRK09302 circadian clock prote 36.2 13 0.00028 36.4 0.2 30 48-77 16-48 (509)
426 PRK14494 putative molybdopteri 36.1 9.9 0.00021 33.3 -0.5 21 64-84 5-25 (229)
427 PRK10751 molybdopterin-guanine 36.1 12 0.00025 31.4 -0.1 18 66-83 12-29 (173)
428 cd03240 ABC_Rad50 The catalyti 36.1 6.9 0.00015 33.4 -1.5 17 62-78 24-40 (204)
429 TIGR00382 clpX endopeptidase C 35.9 8.9 0.00019 36.7 -0.9 18 61-78 117-134 (413)
430 PRK00300 gmk guanylate kinase; 35.8 11 0.00023 31.7 -0.3 15 62-76 7-21 (205)
431 PRK14527 adenylate kinase; Pro 35.8 11 0.00023 31.6 -0.3 16 62-77 8-23 (191)
432 cd03238 ABC_UvrA The excision 35.5 8.7 0.00019 32.1 -0.9 15 64-78 25-39 (176)
433 TIGR00235 udk uridine kinase. 35.4 11 0.00024 32.0 -0.4 15 63-77 9-23 (207)
434 KOG0651|consensus 35.3 12 0.00026 34.6 -0.1 69 26-94 127-223 (388)
435 PRK14962 DNA polymerase III su 35.3 11 0.00025 36.6 -0.3 17 62-78 38-54 (472)
436 PRK06731 flhF flagellar biosyn 35.3 14 0.00031 33.2 0.4 22 61-82 76-97 (270)
437 PF01745 IPT: Isopentenyl tran 35.3 13 0.00027 32.6 -0.0 14 64-77 5-18 (233)
438 PHA02530 pseT polynucleotide k 35.2 8.8 0.00019 34.4 -1.0 16 62-77 4-19 (300)
439 PTZ00014 myosin-A; Provisional 35.1 12 0.00027 39.0 -0.1 35 43-78 166-201 (821)
440 PF10923 DUF2791: P-loop Domai 35.1 12 0.00026 35.8 -0.1 68 49-116 38-113 (416)
441 cd00227 CPT Chloramphenicol (C 35.1 11 0.00024 31.0 -0.3 15 62-76 4-18 (175)
442 COG0324 MiaA tRNA delta(2)-iso 35.0 11 0.00024 34.5 -0.3 16 63-78 6-21 (308)
443 PF03796 DnaB_C: DnaB-like hel 35.0 15 0.00033 32.3 0.5 36 49-85 6-44 (259)
444 PRK10875 recD exonuclease V su 35.0 15 0.00032 37.1 0.5 24 61-85 169-192 (615)
445 TIGR03574 selen_PSTK L-seryl-t 35.0 9.4 0.0002 33.4 -0.9 16 63-78 2-17 (249)
446 TIGR00390 hslU ATP-dependent p 34.9 9.7 0.00021 36.6 -0.8 17 61-77 48-64 (441)
447 KOG1547|consensus 34.9 16 0.00035 32.6 0.6 32 45-76 30-62 (336)
448 PRK10263 DNA translocase FtsK; 34.9 13 0.00027 40.6 -0.1 23 62-84 1012-1034(1355)
449 KOG0328|consensus 34.8 19 0.00042 32.8 1.1 27 49-77 55-81 (400)
450 TIGR02442 Cob-chelat-sub cobal 34.8 22 0.00047 36.0 1.6 49 28-89 1-49 (633)
451 KOG0924|consensus 34.6 7.9 0.00017 39.3 -1.5 21 58-78 369-389 (1042)
452 TIGR02329 propionate_PrpR prop 34.4 6.2 0.00013 39.0 -2.3 44 27-76 208-251 (526)
453 PRK00091 miaA tRNA delta(2)-is 34.3 12 0.00025 34.4 -0.4 16 62-77 6-21 (307)
454 TIGR01425 SRP54_euk signal rec 34.2 7.5 0.00016 37.4 -1.7 22 60-81 100-121 (429)
455 PRK01184 hypothetical protein; 34.2 9.7 0.00021 31.5 -0.8 14 63-76 4-17 (184)
456 PF13304 AAA_21: AAA domain; P 34.2 13 0.00029 31.0 0.0 15 65-79 4-18 (303)
457 PRK13891 conjugal transfer pro 34.2 13 0.00029 38.9 0.0 25 61-85 489-513 (852)
458 PRK14961 DNA polymerase III su 34.1 12 0.00027 34.9 -0.3 17 62-78 40-56 (363)
459 TIGR00580 mfd transcription-re 34.1 17 0.00036 38.5 0.7 32 47-78 459-490 (926)
460 cd01918 HprK_C HprK/P, the bif 34.1 8.4 0.00018 31.5 -1.2 22 60-81 14-35 (149)
461 TIGR03783 Bac_Flav_CT_G Bacter 34.0 13 0.00028 38.9 -0.2 25 60-84 438-462 (829)
462 cd03279 ABC_sbcCD SbcCD and ot 34.0 9.8 0.00021 32.5 -0.9 18 62-79 30-47 (213)
463 PRK06305 DNA polymerase III su 33.9 9.8 0.00021 36.8 -1.0 42 29-78 15-57 (451)
464 KOG1514|consensus 33.8 13 0.00028 37.8 -0.1 33 49-81 409-443 (767)
465 PF04310 MukB: MukB N-terminal 33.7 9 0.0002 33.1 -1.1 16 66-81 33-48 (227)
466 PF04665 Pox_A32: Poxvirus A32 33.6 13 0.00028 32.9 -0.2 17 65-81 18-34 (241)
467 PRK04863 mukB cell division pr 33.5 12 0.00026 41.6 -0.5 21 62-82 29-49 (1486)
468 PF05872 DUF853: Bacterial pro 33.4 16 0.00035 35.4 0.4 13 66-78 25-37 (502)
469 PF02463 SMC_N: RecF/RecN/SMC 33.3 14 0.00031 31.4 0.0 14 63-76 27-40 (220)
470 PLN03187 meiotic recombination 33.2 14 0.0003 34.5 -0.1 32 47-78 110-144 (344)
471 PRK00279 adk adenylate kinase; 33.2 13 0.00027 31.8 -0.3 14 63-76 3-16 (215)
472 KOG1532|consensus 33.1 15 0.00032 33.5 0.1 19 59-77 18-36 (366)
473 PLN02200 adenylate kinase fami 33.1 11 0.00023 33.1 -0.8 15 62-76 45-59 (234)
474 TIGR01587 cas3_core CRISPR-ass 32.9 13 0.00028 34.2 -0.3 16 63-78 2-17 (358)
475 COG1783 XtmB Phage terminase l 32.9 28 0.0006 33.0 1.8 30 62-94 26-55 (414)
476 cd03242 ABC_RecF RecF is a rec 32.8 12 0.00026 33.4 -0.6 15 64-78 25-39 (270)
477 PRK05416 glmZ(sRNA)-inactivati 32.8 8.6 0.00019 34.9 -1.5 17 62-78 8-24 (288)
478 PF09439 SRPRB: Signal recogni 32.7 12 0.00025 31.7 -0.6 14 62-75 5-18 (181)
479 PRK11034 clpA ATP-dependent Cl 32.7 11 0.00025 38.9 -0.8 18 61-78 489-506 (758)
480 PRK12337 2-phosphoglycerate ki 32.7 12 0.00026 36.4 -0.6 23 59-81 254-276 (475)
481 TIGR01547 phage_term_2 phage t 32.5 15 0.00032 34.6 -0.0 16 63-78 4-19 (396)
482 COG1162 Predicted GTPases [Gen 32.5 9.9 0.00022 34.7 -1.1 31 50-82 156-186 (301)
483 PRK09825 idnK D-gluconate kina 32.4 8.6 0.00019 32.0 -1.5 16 63-78 6-21 (176)
484 COG1643 HrpA HrpA-like helicas 32.4 16 0.00034 38.2 0.2 27 50-77 56-82 (845)
485 PF03029 ATP_bind_1: Conserved 32.4 13 0.00028 32.7 -0.4 14 66-79 2-15 (238)
486 PRK14528 adenylate kinase; Pro 32.2 11 0.00024 31.6 -0.8 15 63-77 4-18 (186)
487 cd00544 CobU Adenosylcobinamid 32.1 13 0.00029 30.8 -0.3 14 63-76 2-15 (169)
488 cd03241 ABC_RecN RecN ATPase i 32.1 28 0.0006 31.1 1.7 14 65-78 26-39 (276)
489 PRK06645 DNA polymerase III su 31.9 15 0.00033 36.1 -0.0 24 55-78 37-61 (507)
490 cd03278 ABC_SMC_barmotin Barmo 31.8 10 0.00023 32.1 -1.0 15 64-78 26-40 (197)
491 PRK13880 conjugal transfer cou 31.7 18 0.0004 36.6 0.5 17 61-77 176-192 (636)
492 PF01926 MMR_HSR1: 50S ribosom 31.7 13 0.00029 28.0 -0.4 13 64-76 3-15 (116)
493 PHA02558 uvsW UvsW helicase; P 31.6 21 0.00045 34.9 0.9 28 51-80 122-149 (501)
494 cd02028 UMPK_like Uridine mono 31.6 11 0.00024 31.4 -0.9 15 64-78 3-17 (179)
495 TIGR00174 miaA tRNA isopenteny 31.5 14 0.0003 33.6 -0.3 16 63-78 2-17 (287)
496 TIGR00150 HI0065_YjeE ATPase, 31.5 11 0.00024 30.1 -0.8 21 62-82 24-44 (133)
497 TIGR02639 ClpA ATP-dependent C 31.4 11 0.00025 38.7 -1.1 18 61-78 485-502 (731)
498 cd03272 ABC_SMC3_euk Eukaryoti 31.4 12 0.00025 32.5 -0.9 15 64-78 27-41 (243)
499 COG1763 MobB Molybdopterin-gua 31.3 22 0.00047 29.4 0.8 19 66-84 8-26 (161)
500 TIGR03878 thermo_KaiC_2 KaiC d 31.2 13 0.00029 32.9 -0.5 17 60-76 36-52 (259)
No 1
>KOG4280|consensus
Probab=100.00 E-value=7.5e-62 Score=463.26 Aligned_cols=215 Identities=33% Similarity=0.489 Sum_probs=201.8
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh-------HHHHHHHHHHHHHcCc---
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS-------AMIMKTLQHVMQRCNK--- 94 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~-------Gii~r~l~~lf~~~~~--- 94 (279)
.+.|+||.||+++++|++||+.++.|+|+++++|||+||||||||||||||||. |||||++.+||.++..
T Consensus 51 ~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~ 130 (574)
T KOG4280|consen 51 PKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKE 130 (574)
T ss_pred CCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccc
Confidence 557999999999999999999999999999999999999999999999999998 8999999999998876
Q ss_pred ---cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccccccceeE
Q psy7226 95 ---DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQL 171 (279)
Q Consensus 95 ---~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~l 171 (279)
|.|++||+|||||.|+|||++. ....+.+++++..|++|.|++++.|.++++++.+
T Consensus 131 ~~~f~vrvS~lEiYnE~i~DLL~~~---------------------~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~ 189 (574)
T KOG4280|consen 131 KTRFLVRVSYLEIYNESIRDLLSPV---------------------NPKGLELREDPKCGVYVENLSEMDVESAEDAQQL 189 (574)
T ss_pred cceEEEEeehHHHHhHHHHHHhCcc---------------------CcCCceeeEcCCCceEecCcceeecCCHHHHHHH
Confidence 7799999999999999999954 2267899999999999999999999999999999
Q ss_pred EEecccceeeEEEeecccccCceeeeeeehh------------hhhhhhhccccCccceecccchhhhhhhhcccccccc
Q psy7226 172 IVTGNENKVTAVTKMNAQSSRSHTICTIYLG------------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLH 239 (279)
Q Consensus 172 l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~------------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~ 239 (279)
|..|..+|.+++|.||..|||||+||+|+|. +.|||+|||||||||..+++++|.|++|+.+||+||+
T Consensus 190 l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs 269 (574)
T KOG4280|consen 190 LVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLS 269 (574)
T ss_pred HHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHH
Confidence 9999999999999999999999999999997 5799999999999999999999999999999999999
Q ss_pred hhhhhHHHhcCchhHHHHHHh
Q psy7226 240 YLEQEEEEEKGKEEEEEEEKK 260 (279)
Q Consensus 240 aL~~vi~aL~~~~~~~~~~~~ 260 (279)
+||+||.||+++.+.=...+.
T Consensus 270 ~LG~vI~aLvd~~~~HIPYRd 290 (574)
T KOG4280|consen 270 ALGNVISALVDGSKTHIPYRD 290 (574)
T ss_pred HHHHHHHHHhccccCCCCcch
Confidence 999999999999874333333
No 2
>KOG0245|consensus
Probab=100.00 E-value=7.1e-60 Score=461.39 Aligned_cols=208 Identities=32% Similarity=0.444 Sum_probs=195.8
Q ss_pred eeEeeecccCCC-------CCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh--------HHHHHHHHHHHH
Q psy7226 26 QVFIFDNIFGPN-------DSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS--------AMIMKTLQHVMQ 90 (279)
Q Consensus 26 ~~f~FD~Vf~~~-------a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~--------Gii~r~l~~lf~ 90 (279)
..|.||+.|+.. ++|..||++++.|+|+++|+|||+||||||||||||||||. |||||.+++||.
T Consensus 47 ~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ 126 (1221)
T KOG0245|consen 47 PKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFS 126 (1221)
T ss_pred CceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHH
Confidence 359999888655 68999999999999999999999999999999999999998 899999999999
Q ss_pred HcCc-------cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhcc
Q psy7226 91 RCNK-------DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLD 163 (279)
Q Consensus 91 ~~~~-------~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~ 163 (279)
++.. |.|.|||+|||||+|+|||+. +....++++++.|..|.||.+|+.+.|+
T Consensus 127 ri~~nq~~~~sy~VevSymEIYcErVrDLL~~--------------------p~~kg~LRVREHP~lGPYVedLS~~aV~ 186 (1221)
T KOG0245|consen 127 RIADNQSQQMSYSVEVSYMEIYCERVRDLLNA--------------------PKSKGGLRVREHPILGPYVEDLSKLAVT 186 (1221)
T ss_pred HHhhcccccceEEEEEeehhHHHHHHHHHhhC--------------------CCCCCCceeeccCccChhHhHhhhcccc
Confidence 9876 899999999999999999982 2234789999999999999999999999
Q ss_pred ccccceeEEEecccceeeEEEeecccccCceeeeeeehh-------------hhhhhhhccccCccceecccchhhhhhh
Q psy7226 164 SLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYLG-------------AMAKLHLVDLAGSEQLFSLSDNYLLRNE 230 (279)
Q Consensus 164 s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~-------------~~s~l~~VDLAGsEr~~~~~~~g~r~~E 230 (279)
|..|+..+|..|++.|++++|.||..|||||+||+|.++ .+|+|+|||||||||...++++|.|++|
T Consensus 187 Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKE 266 (1221)
T KOG0245|consen 187 SYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKE 266 (1221)
T ss_pred cHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeeeeeEEeccCcccccccCCCccchhc
Confidence 999999999999999999999999999999999999986 6799999999999999999999999999
Q ss_pred hcccccccchhhhhHHHhcCchh
Q psy7226 231 ARKINLSLHYLEQEEEEEKGKEE 253 (279)
Q Consensus 231 ~~~IN~SL~aL~~vi~aL~~~~~ 253 (279)
|.+|||||++||+||.||++.+.
T Consensus 267 Ga~INKSLtTLGkVISALAe~~~ 289 (1221)
T KOG0245|consen 267 GANINKSLTTLGKVISALAESQK 289 (1221)
T ss_pred ccccchHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999854
No 3
>KOG0243|consensus
Probab=100.00 E-value=6.6e-60 Score=468.03 Aligned_cols=217 Identities=32% Similarity=0.475 Sum_probs=195.0
Q ss_pred eceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh--------------HHHHHHHHHHH
Q psy7226 24 DHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS--------------AMIMKTLQHVM 89 (279)
Q Consensus 24 ~~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~--------------Gii~r~l~~lf 89 (279)
-.+.|.||+||+|++.|.+||+.++.|+|..|+.|||||||||||||+||||||. |||||++.+||
T Consensus 93 ~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IF 172 (1041)
T KOG0243|consen 93 IDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIF 172 (1041)
T ss_pred ccceeecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHH
Confidence 3778999999999999999999999999999999999999999999999999998 79999999999
Q ss_pred HHcCc----cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhcccc
Q psy7226 90 QRCNK----DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSL 165 (279)
Q Consensus 90 ~~~~~----~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~ 165 (279)
..+.. |.|.|||+|+|||.++|||++....... .+ +....++. +..+|+.++||.++.|.++
T Consensus 173 d~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~----------~~-~k~~~~~~---~~kggV~vkGlEEi~V~~A 238 (1041)
T KOG0243|consen 173 DTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSDKK----------LR-IKDDSTIV---DGKGGVIVKGLEEIIVTNA 238 (1041)
T ss_pred HHHHhcCCeEEEEEEehhhhhHHHHHhcCCccccccc----------cc-cccCCccc---CCcCcEEEecceeeeecch
Confidence 98765 9999999999999999999966321100 00 00001111 6688999999999999999
Q ss_pred ccceeEEEecccceeeEEEeecccccCceeeeeeehh------------hhhhhhhccccCccceecccchhhhhhhhcc
Q psy7226 166 NSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYLG------------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARK 233 (279)
Q Consensus 166 ~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~------------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~ 233 (279)
.|++.+|.+|..+|++++|.||..|||||+||+|+|. ..|+|+||||||||.+..+|+.+.|.+|+..
T Consensus 239 ~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~ 318 (1041)
T KOG0243|consen 239 DEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGE 318 (1041)
T ss_pred hHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHhhh
Confidence 9999999999999999999999999999999999995 6799999999999999999999999999999
Q ss_pred cccccchhhhhHHHhcCchhH
Q psy7226 234 INLSLHYLEQEEEEEKGKEEE 254 (279)
Q Consensus 234 IN~SL~aL~~vi~aL~~~~~~ 254 (279)
||+||++||+||+||.+..+|
T Consensus 319 INqSLLTLGRVInALVe~s~H 339 (1041)
T KOG0243|consen 319 INQSLLTLGRVINALVEHSGH 339 (1041)
T ss_pred hhHHHHHHHHHHHHHHccCCC
Confidence 999999999999999998776
No 4
>KOG0240|consensus
Probab=100.00 E-value=6e-59 Score=434.30 Aligned_cols=217 Identities=31% Similarity=0.446 Sum_probs=206.0
Q ss_pred eeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh---------HHHHHHHHHHHHHcCc--
Q psy7226 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS---------AMIMKTLQHVMQRCNK-- 94 (279)
Q Consensus 26 ~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~---------Gii~r~l~~lf~~~~~-- 94 (279)
..|.||+||.|+++|++||+.++.|+|++++.|||+||||||||||||||||. ||+||++++||.++..
T Consensus 49 ~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~ 128 (607)
T KOG0240|consen 49 KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSME 128 (607)
T ss_pred ccceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999999999999997 8999999999999877
Q ss_pred ----cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhcccccccee
Q psy7226 95 ----DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQ 170 (279)
Q Consensus 95 ----~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~ 170 (279)
|.|+|||+|||+|+++|||+|.. .++.+.+|...+++++|++...|.+++++++
T Consensus 129 ~n~efhVkVsy~EIYmEKi~DLL~~~k----------------------~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~ 186 (607)
T KOG0240|consen 129 ENLEFHVKVSYFEIYMEKIRDLLDPEK----------------------TNLSVHEDKNRVPYVKGVTERFVSSPDEVLD 186 (607)
T ss_pred ccceEEEEEEeehhhhhHHHHHhCccc----------------------CCceeecccCCCceecCceeEEecCHHHHHH
Confidence 88999999999999999998543 7889999999999999999999999999999
Q ss_pred EEEecccceeeEEEeecccccCceeeeeeehh---------hhhhhhhccccCccceecccchhhhhhhhcccccccchh
Q psy7226 171 LIVTGNENKVTAVTKMNAQSSRSHTICTIYLG---------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYL 241 (279)
Q Consensus 171 ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~---------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~aL 241 (279)
.++.|..+|.++.|.||.+|||||+||+|+|. ..|+|+||||||||+..+++++|.-+.|+++||+||+||
T Consensus 187 ~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaL 266 (607)
T KOG0240|consen 187 VIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSAL 266 (607)
T ss_pred HHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHH
Confidence 99999999999999999999999999999997 689999999999999999999999999999999999999
Q ss_pred hhhHHHhcCchhHHHHHHhhccc
Q psy7226 242 EQEEEEEKGKEEEEEEEKKKGKK 264 (279)
Q Consensus 242 ~~vi~aL~~~~~~~~~~~~~~~~ 264 (279)
|+||+||+++..+-.+.+..|.+
T Consensus 267 gnvI~aLa~g~~shipYRDSKLT 289 (607)
T KOG0240|consen 267 GNVINALAEGPKSHIPYRDSKLT 289 (607)
T ss_pred HHHHHHHhcCCCCCCcchhhHHH
Confidence 99999999997766666665544
No 5
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=4.3e-58 Score=423.47 Aligned_cols=205 Identities=31% Similarity=0.425 Sum_probs=192.6
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh--------------HHHHHHHHHHHH
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS--------------AMIMKTLQHVMQ 90 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~--------------Gii~r~l~~lf~ 90 (279)
.+.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+ ||+||++++||.
T Consensus 40 ~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~ 119 (337)
T cd01373 40 PRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFS 119 (337)
T ss_pred CcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999996 799999999998
Q ss_pred HcCc----------cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhh
Q psy7226 91 RCNK----------DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVK 160 (279)
Q Consensus 91 ~~~~----------~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 160 (279)
.+.. +.|++||+|||||+++|||++.. ..+.+++++.+++++.|++++
T Consensus 120 ~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~----------------------~~l~i~e~~~~~~~v~gl~~~ 177 (337)
T cd01373 120 LIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS----------------------RNLKIREDIKKGVYVENLTEE 177 (337)
T ss_pred HHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC----------------------CCceEEECCCCCEEeCCCEEE
Confidence 7642 68999999999999999997431 467888999999999999999
Q ss_pred hccccccceeEEEecccceeeEEEeecccccCceeeeeeehh-----------hhhhhhhccccCccceecccchhhhhh
Q psy7226 161 KLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYLG-----------AMAKLHLVDLAGSEQLFSLSDNYLLRN 229 (279)
Q Consensus 161 ~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~-----------~~s~l~~VDLAGsEr~~~~~~~g~r~~ 229 (279)
.|.|++|++++|..|..+|.+++|.+|..|||||+||+|+|. ..|+|+|||||||||..++++.|.+++
T Consensus 178 ~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~ 257 (337)
T cd01373 178 YVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLK 257 (337)
T ss_pred EeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEEECCCCCcccccCCccHhhh
Confidence 999999999999999999999999999999999999999995 358999999999999999999999999
Q ss_pred hhcccccccchhhhhHHHhcCc
Q psy7226 230 EARKINLSLHYLEQEEEEEKGK 251 (279)
Q Consensus 230 E~~~IN~SL~aL~~vi~aL~~~ 251 (279)
|+..||+||++|++||.+|+++
T Consensus 258 E~~~IN~SL~~L~~vi~aL~~~ 279 (337)
T cd01373 258 EAKNINKSLSTLGHVIMALVDV 279 (337)
T ss_pred hhccccHHHHHHHHHHHHHHhh
Confidence 9999999999999999999864
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.5e-57 Score=420.02 Aligned_cols=207 Identities=31% Similarity=0.483 Sum_probs=196.0
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh------HHHHHHHHHHHHHcCc----
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------AMIMKTLQHVMQRCNK---- 94 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~------Gii~r~l~~lf~~~~~---- 94 (279)
.+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+ |||||++++||..+..
T Consensus 53 ~~~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~ 132 (338)
T cd01370 53 ELKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDD 132 (338)
T ss_pred ceEEEeccccCCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccC
Confidence 578999999999999999999999999999999999999999999999999997 7999999999998764
Q ss_pred --cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccccccceeEE
Q psy7226 95 --DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLI 172 (279)
Q Consensus 95 --~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll 172 (279)
+.|++||+|||||+++|||++. ..++.+++++.+++++.|++++.|.+++|++++|
T Consensus 133 ~~~~v~vS~~EIyne~v~DLL~~~----------------------~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l 190 (338)
T cd01370 133 KEFEVSLSYLEIYNETIRDLLSPS----------------------SGPLELREDPNQGIVVAGLTEHQPKSAEEILELL 190 (338)
T ss_pred ceEEEEEEEEEEECCEEEECCCCC----------------------CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHH
Confidence 6799999999999999999843 2578899999999999999999999999999999
Q ss_pred EecccceeeEEEeecccccCceeeeeeehh------------hhhhhhhccccCccceecccchhhhhhhhcccccccch
Q psy7226 173 VTGNENKVTAVTKMNAQSSRSHTICTIYLG------------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHY 240 (279)
Q Consensus 173 ~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~------------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~a 240 (279)
..|.++|.+++|.+|..|||||+||+|++. ..|+|+|||||||||..+++..|.+++|+..||+||++
T Consensus 191 ~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~ 270 (338)
T cd01370 191 MKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLA 270 (338)
T ss_pred HHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHH
Confidence 999999999999999999999999999996 35889999999999999999999999999999999999
Q ss_pred hhhhHHHhcCchh
Q psy7226 241 LEQEEEEEKGKEE 253 (279)
Q Consensus 241 L~~vi~aL~~~~~ 253 (279)
|++||.+|++++.
T Consensus 271 L~~vi~~L~~~~~ 283 (338)
T cd01370 271 LGNCINALVDGKK 283 (338)
T ss_pred HHHHHHHHHhccC
Confidence 9999999998863
No 7
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=4.1e-57 Score=452.55 Aligned_cols=210 Identities=32% Similarity=0.444 Sum_probs=196.4
Q ss_pred EEEeeceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh----------------HHHHH
Q psy7226 20 WLFFDHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS----------------AMIMK 83 (279)
Q Consensus 20 ~~~~~~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~----------------Gii~r 83 (279)
.+.++++.|.||+||+++++|++||+.++.|+|+.+++|||+||||||||||||||||+ |||||
T Consensus 126 sl~I~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPR 205 (1320)
T PLN03188 126 SLTINGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPR 205 (1320)
T ss_pred eEEEeCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHH
Confidence 45567899999999999999999999999999999999999999999999999999996 69999
Q ss_pred HHHHHHHHcCc-----------cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCc
Q psy7226 84 TLQHVMQRCNK-----------DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGR 152 (279)
Q Consensus 84 ~l~~lf~~~~~-----------~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (279)
++++||..+.. |.|+|||+|||||+|+|||++.. ..+.+++++.+++
T Consensus 206 aledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~----------------------k~L~IRED~kgGv 263 (1320)
T PLN03188 206 VFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQ----------------------KNLQIREDVKSGV 263 (1320)
T ss_pred HHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccccc----------------------CCceEEEcCCCCe
Confidence 99999987642 78999999999999999998431 4578899999999
Q ss_pred ccccchhhhccccccceeEEEecccceeeEEEeecccccCceeeeeeehh-------------hhhhhhhccccCcccee
Q psy7226 153 SAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYLG-------------AMAKLHLVDLAGSEQLF 219 (279)
Q Consensus 153 ~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~-------------~~s~l~~VDLAGsEr~~ 219 (279)
+|.||+++.|.+++|+.++|..|..+|++++|.+|..|||||+||+|.|. ..|+|+|||||||||..
T Consensus 264 ~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~k 343 (1320)
T PLN03188 264 YVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQK 343 (1320)
T ss_pred EeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhcc
Confidence 99999999999999999999999999999999999999999999999985 35889999999999999
Q ss_pred cccchhhhhhhhcccccccchhhhhHHHhcCc
Q psy7226 220 SLSDNYLLRNEARKINLSLHYLEQEEEEEKGK 251 (279)
Q Consensus 220 ~~~~~g~r~~E~~~IN~SL~aL~~vi~aL~~~ 251 (279)
++++.|.+++|+..||+||++||+||.+|+..
T Consensus 344 kTga~G~RLkEA~~INKSLsaLGnVI~ALae~ 375 (1320)
T PLN03188 344 LTGAAGDRLKEAGNINRSLSQLGNLINILAEI 375 (1320)
T ss_pred ccCcccHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999865
No 8
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=3.1e-57 Score=418.94 Aligned_cols=213 Identities=31% Similarity=0.461 Sum_probs=198.5
Q ss_pred eceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh------HHHHHHHHHHHHHcCccch
Q psy7226 24 DHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------AMIMKTLQHVMQRCNKDDV 97 (279)
Q Consensus 24 ~~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~------Gii~r~l~~lf~~~~~~~v 97 (279)
..+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+ |||||++++||+.+..+.|
T Consensus 53 ~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~~~v 132 (345)
T cd01368 53 KETKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGGYSV 132 (345)
T ss_pred CceEeecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHheeE
Confidence 4678999999999999999999999999999999999999999999999999998 7999999999999999999
Q ss_pred hhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccccccceeEEEeccc
Q psy7226 98 YMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNE 177 (279)
Q Consensus 98 ~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~ 177 (279)
.+||+|||||+|+|||++.... .....++.+++++.+++++.|++++.|.|++|+.++|..|..
T Consensus 133 ~~S~~EIyne~v~DLL~~~~~~----------------~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~ 196 (345)
T cd01368 133 FVSYVEIYNNYIYDLLEDSPSS----------------TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQK 196 (345)
T ss_pred EEEEEEEeCCEeEeCCCCcccc----------------ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhc
Confidence 9999999999999999865321 122357888999999999999999999999999999999999
Q ss_pred ceeeEEEeecccccCceeeeeeehh-----------------hhhhhhhccccCccceecccchhhhhhhhcccccccch
Q psy7226 178 NKVTAVTKMNAQSSRSHTICTIYLG-----------------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHY 240 (279)
Q Consensus 178 ~R~~~~t~~n~~SSRSH~i~~i~v~-----------------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~a 240 (279)
+|.+++|.+|..|||||+||+|++. ..|+|+|||||||||..++++.|.+++|+..||+||++
T Consensus 197 ~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~a 276 (345)
T cd01368 197 NRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMT 276 (345)
T ss_pred cceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHH
Confidence 9999999999999999999999985 24789999999999999999999999999999999999
Q ss_pred hhhhHHHhcCch
Q psy7226 241 LEQEEEEEKGKE 252 (279)
Q Consensus 241 L~~vi~aL~~~~ 252 (279)
|++||.+|++++
T Consensus 277 L~~vi~aL~~~~ 288 (345)
T cd01368 277 LGKCIEVLRENQ 288 (345)
T ss_pred HHHHHHHHHhhh
Confidence 999999998754
No 9
>KOG0242|consensus
Probab=100.00 E-value=2.6e-57 Score=446.07 Aligned_cols=216 Identities=32% Similarity=0.480 Sum_probs=200.4
Q ss_pred eeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh------HHHHHHHHHHHHHcCc-----
Q psy7226 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------AMIMKTLQHVMQRCNK----- 94 (279)
Q Consensus 26 ~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~------Gii~r~l~~lf~~~~~----- 94 (279)
..|.||+||+++++|++||+..++|+|+++++|+|++|||||||||||||||. ||||+++.+||+.+..
T Consensus 53 ~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~ 132 (675)
T KOG0242|consen 53 EKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGERE 132 (675)
T ss_pred cceeeeeecCCCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCce
Confidence 78999999999999999999999999999999999999999999999999998 7899999999999876
Q ss_pred cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccccccceeEEEe
Q psy7226 95 DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVT 174 (279)
Q Consensus 95 ~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~ 174 (279)
|.|.+||+|||||.|+|||+|+. ..+.+++|+.++++|.||++..|.|+++++.+|..
T Consensus 133 f~v~vSYlEIYNE~I~DLL~~~~----------------------~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~ 190 (675)
T KOG0242|consen 133 FSVRVSYLEIYNERIRDLLNPDG----------------------GDLRLREDSEGGIVVPGLTEETVSSREELLELLQK 190 (675)
T ss_pred eEEEEEEEEEeccccccccCCCC----------------------CCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHH
Confidence 88999999999999999998542 44899999999999999999999999999999999
Q ss_pred cccceeeEEEeecccccCceeeeeeehhh--------hhhhhhccccCccceecccchhhhhhhhcccccccchhhhhHH
Q psy7226 175 GNENKVTAVTKMNAQSSRSHTICTIYLGA--------MAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQEEE 246 (279)
Q Consensus 175 g~~~R~~~~t~~n~~SSRSH~i~~i~v~~--------~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~aL~~vi~ 246 (279)
|..+|+++.|.+|..|||||+||+|.+.. .++|+|||||||||...+++.|.|++||.+||+||++||+||+
T Consensus 191 g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~ 270 (675)
T KOG0242|consen 191 GNKNRTTGETNLNEQSSRSHAILRITVESRGREASSRVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVIN 270 (675)
T ss_pred hhccCcccccccccccchhhheeeEEEEeccccccchhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999972 3669999999999999999999999999999999999999999
Q ss_pred HhcCchhHH-HHHHhhcc
Q psy7226 247 EEKGKEEEE-EEEKKKGK 263 (279)
Q Consensus 247 aL~~~~~~~-~~~~~~~~ 263 (279)
+|+++.... ...+..|.
T Consensus 271 ~Ls~~~~~~hipYRDSKL 288 (675)
T KOG0242|consen 271 KLSEGKRPRHIPYRDSKL 288 (675)
T ss_pred HHccccccCCCCccccHH
Confidence 999985433 44444443
No 10
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.7e-55 Score=404.04 Aligned_cols=206 Identities=33% Similarity=0.471 Sum_probs=194.4
Q ss_pred eceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh------HHHHHHHHHHHHHcCc---
Q psy7226 24 DHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------AMIMKTLQHVMQRCNK--- 94 (279)
Q Consensus 24 ~~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~------Gii~r~l~~lf~~~~~--- 94 (279)
+.+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+ ||+||++++||..+..
T Consensus 49 ~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~~ 128 (322)
T cd01367 49 EKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPND 128 (322)
T ss_pred CCceEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhcccc
Confidence 3678999999999999999999999999999999999999999999999999999 9999999999999875
Q ss_pred -cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccccccceeEEE
Q psy7226 95 -DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIV 173 (279)
Q Consensus 95 -~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~ 173 (279)
+.|++||+|||+|+++|||++. .++.+++++.+++++.|++++.|.|++|+.++|.
T Consensus 129 ~~~v~~S~~EIy~e~v~DLL~~~-----------------------~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~ 185 (322)
T cd01367 129 DLGVTVSFFEIYGGKLFDLLNDR-----------------------KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIE 185 (322)
T ss_pred ccEEEEEEEeeecCchhhhccCc-----------------------cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHH
Confidence 7999999999999999999842 5688889999999999999999999999999999
Q ss_pred ecccceeeEEEeecccccCceeeeeeehh------hhhhhhhccccCccceeccc-chhhhhhhhcccccccchhhhhHH
Q psy7226 174 TGNENKVTAVTKMNAQSSRSHTICTIYLG------AMAKLHLVDLAGSEQLFSLS-DNYLLRNEARKINLSLHYLEQEEE 246 (279)
Q Consensus 174 ~g~~~R~~~~t~~n~~SSRSH~i~~i~v~------~~s~l~~VDLAGsEr~~~~~-~~g~r~~E~~~IN~SL~aL~~vi~ 246 (279)
.|..+|..++|.+|..|||||+||+|++. ..|+|+|||||||||....+ ..+.+++|+..||+||++|++||.
T Consensus 186 ~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~ 265 (322)
T cd01367 186 SGNSLRTTGSTGANDQSSRSHAILQIILKNKKLNKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIR 265 (322)
T ss_pred HHhcccccccCcCCCCcccceEEEEEEEEEecCCeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHH
Confidence 99999999999999999999999999997 36799999999999998765 468999999999999999999999
Q ss_pred HhcCch
Q psy7226 247 EEKGKE 252 (279)
Q Consensus 247 aL~~~~ 252 (279)
+|++++
T Consensus 266 al~~~~ 271 (322)
T cd01367 266 ALASNK 271 (322)
T ss_pred HHhcCC
Confidence 999875
No 11
>KOG0239|consensus
Probab=100.00 E-value=1.1e-54 Score=426.26 Aligned_cols=215 Identities=32% Similarity=0.415 Sum_probs=200.0
Q ss_pred eEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh-------HHHHHHHHHHHHHcCc-----
Q psy7226 27 VFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS-------AMIMKTLQHVMQRCNK----- 94 (279)
Q Consensus 27 ~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~-------Gii~r~l~~lf~~~~~----- 94 (279)
.|.||+||+|.++|++||.++ .|+|+++++|||+||||||||||||||||. ||+||+++.||..+..
T Consensus 361 ~f~fdkVf~p~~sQ~~VF~e~-~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~ 439 (670)
T KOG0239|consen 361 SFKFDKVFGPLASQDDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGW 439 (670)
T ss_pred cceeeeecCCcccHHHHHHHH-HHHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCc
Confidence 499999999999999999997 999999999999999999999999999998 6999999999988766
Q ss_pred -cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccccccceeEEE
Q psy7226 95 -DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIV 173 (279)
Q Consensus 95 -~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~ 173 (279)
|.+.++|+|||||.++|||++.. ....+.|+.++.+..+|.+++.+.|.+.+++..++.
T Consensus 440 ~y~~~~s~~EIYNe~i~DlL~~~~--------------------~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~ 499 (670)
T KOG0239|consen 440 KYDKTVSMLEIYNEAIRDLLSDES--------------------YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLE 499 (670)
T ss_pred eEEeeeehhHHHHHHHHHhccccc--------------------cccceeEEEcCCCceecccceEEecCCHHHHHHHHH
Confidence 88999999999999999998431 236788889999999999999999999999999999
Q ss_pred ecccceeeEEEeecccccCceeeeeeehh---------hhhhhhhccccCccceecccchhhhhhhhcccccccchhhhh
Q psy7226 174 TGNENKVTAVTKMNAQSSRSHTICTIYLG---------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQE 244 (279)
Q Consensus 174 ~g~~~R~~~~t~~n~~SSRSH~i~~i~v~---------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~aL~~v 244 (279)
.|..+|.+++|.+|.+|||||+||+++|. ..|.|+|||||||||+.+++.+|.|++|+.+||+||++||.|
T Consensus 500 ~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdV 579 (670)
T KOG0239|consen 500 IGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDV 579 (670)
T ss_pred HhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHH
Confidence 99999999999999999999999999997 679999999999999999999999999999999999999999
Q ss_pred HHHhcCchhHHHHHHhhcc
Q psy7226 245 EEEEKGKEEEEEEEKKKGK 263 (279)
Q Consensus 245 i~aL~~~~~~~~~~~~~~~ 263 (279)
|.||+...+|- +.|+.|.
T Consensus 580 i~AL~~k~~Hi-PyRNSKL 597 (670)
T KOG0239|consen 580 ISALASKRSHI-PYRNSKL 597 (670)
T ss_pred HHHHhhcCCCC-cccccch
Confidence 99999987775 5555443
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=5.8e-55 Score=405.63 Aligned_cols=211 Identities=34% Similarity=0.467 Sum_probs=196.2
Q ss_pred ceeEeeecccCCC-------CCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh------HHHHHHHHHHHHH
Q psy7226 25 HQVFIFDNIFGPN-------DSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------AMIMKTLQHVMQR 91 (279)
Q Consensus 25 ~~~f~FD~Vf~~~-------a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~------Gii~r~l~~lf~~ 91 (279)
.+.|.||+||+++ ++|++||+.++.|+|+++++|+|+||||||||||||||||+ ||+||++++||+.
T Consensus 47 ~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~ 126 (356)
T cd01365 47 PKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQR 126 (356)
T ss_pred ceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHH
Confidence 5689999999999 99999999999999999999999999999999999999998 8999999999987
Q ss_pred cCc-------cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccc
Q psy7226 92 CNK-------DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDS 164 (279)
Q Consensus 92 ~~~-------~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s 164 (279)
+.. +.|++||+|||+|+++|||++.. .....+.+++++.+++++.|++++.|.|
T Consensus 127 ~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~-------------------~~~~~l~i~~~~~~g~~v~gl~~~~v~s 187 (356)
T cd01365 127 IESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKK-------------------KNKGNLKVREHPVLGPYVEDLSKVAVTS 187 (356)
T ss_pred HhhccccCceEEEEEEEEEEECCeeeeCCCCCc-------------------cCCcCceEEECCCCCEEeCCCEEEEeCC
Confidence 753 78999999999999999998542 1235678888999999999999999999
Q ss_pred cccceeEEEecccceeeEEEeecccccCceeeeeeehh-------------hhhhhhhccccCccceecccchhhhhhhh
Q psy7226 165 LNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYLG-------------AMAKLHLVDLAGSEQLFSLSDNYLLRNEA 231 (279)
Q Consensus 165 ~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~-------------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~ 231 (279)
++|+..+|..|.++|..++|.+|..|||||+||+|++. ..|+|+|||||||||..+.+..+.+++|+
T Consensus 188 ~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~ 267 (356)
T cd01365 188 YEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEG 267 (356)
T ss_pred HHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeecccccccccccccchhhHHH
Confidence 99999999999999999999999999999999999985 46899999999999999999999999999
Q ss_pred cccccccchhhhhHHHhcCchhH
Q psy7226 232 RKINLSLHYLEQEEEEEKGKEEE 254 (279)
Q Consensus 232 ~~IN~SL~aL~~vi~aL~~~~~~ 254 (279)
..||+||++|++||.+|+..+..
T Consensus 268 ~~IN~SL~aL~~vi~~l~~~~~~ 290 (356)
T cd01365 268 SNINKSLTTLGKVISALADNSSA 290 (356)
T ss_pred HHHhHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999987544
No 13
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=5.5e-55 Score=400.19 Aligned_cols=206 Identities=32% Similarity=0.461 Sum_probs=194.4
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh------HHHHHHHHHHHHHcCc----
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------AMIMKTLQHVMQRCNK---- 94 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~------Gii~r~l~~lf~~~~~---- 94 (279)
.+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+ |||||++++||+....
T Consensus 46 ~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~~~ 125 (319)
T cd01376 46 TKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQAWT 125 (319)
T ss_pred ccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcccc
Confidence 478999999999999999999999999999999999999999999999999997 8999999999987754
Q ss_pred cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccccccceeEEEe
Q psy7226 95 DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVT 174 (279)
Q Consensus 95 ~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~ 174 (279)
+.|++||+|||+|.++|||++. ...+.+++++.+++++.|++++.|.+++|+.+++..
T Consensus 126 ~~v~~S~~EIy~e~v~DLL~~~----------------------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~ 183 (319)
T cd01376 126 GAFSMSYYEIYNEKVYDLLEPA----------------------KKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIP 183 (319)
T ss_pred ceEEEEEEEEECCEeeEccCCC----------------------CCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHH
Confidence 7899999999999999999843 145778889999999999999999999999999999
Q ss_pred cccceeeEEEeecccccCceeeeeeehh-------hhhhhhhccccCccceecccchhhhhhhhcccccccchhhhhHHH
Q psy7226 175 GNENKVTAVTKMNAQSSRSHTICTIYLG-------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQEEEE 247 (279)
Q Consensus 175 g~~~R~~~~t~~n~~SSRSH~i~~i~v~-------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~aL~~vi~a 247 (279)
|.++|..++|.+|..|||||+||+|++. ..|+|+|||||||||..+.+.+|.+++|+..||+||++|++||.+
T Consensus 184 ~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~a 263 (319)
T cd01376 184 ASKNRTVAATKLNDNSSRSHAVLRIKVTQPASNIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDA 263 (319)
T ss_pred HHhhhccccCcCCCccCCCeEEEEEEEEEECCCceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999997 358999999999999999999999999999999999999999999
Q ss_pred hcCch
Q psy7226 248 EKGKE 252 (279)
Q Consensus 248 L~~~~ 252 (279)
|+.+.
T Consensus 264 L~~~~ 268 (319)
T cd01376 264 LNKGL 268 (319)
T ss_pred HhcCC
Confidence 99865
No 14
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=6.5e-55 Score=402.00 Aligned_cols=212 Identities=35% Similarity=0.510 Sum_probs=196.1
Q ss_pred eceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh---------HHHHHHHHHHHHHcCc
Q psy7226 24 DHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS---------AMIMKTLQHVMQRCNK 94 (279)
Q Consensus 24 ~~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~---------Gii~r~l~~lf~~~~~ 94 (279)
..+.|.||+||++ ++|++||+.++.|+|+++++|+|+||||||+|||||||||+ ||+||++++||..+..
T Consensus 46 ~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~ 124 (334)
T cd01375 46 EDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAM 124 (334)
T ss_pred CceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHh
Confidence 4568999999999 99999999999999999999999999999999999999997 7999999999998754
Q ss_pred -----cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccccccce
Q psy7226 95 -----DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAV 169 (279)
Q Consensus 95 -----~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~ 169 (279)
+.|++||+|||+|+++|||++.... ......+.+++++.+++++.|++++.|.+++|++
T Consensus 125 ~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~----------------~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~ 188 (334)
T cd01375 125 RATKTYTVHVSYLEIYNEQLYDLLGDTPEA----------------LESLPAVTILEDSEQNIHVKGLSLHSATTEEEAL 188 (334)
T ss_pred ccCcceEEEEEEEEEECCEeecCCCCCccc----------------cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHH
Confidence 7899999999999999999865210 1123567888999999999999999999999999
Q ss_pred eEEEecccceeeEEEeecccccCceeeeeeehh-----------hhhhhhhccccCccceecccchhhhhhhhccccccc
Q psy7226 170 QLIVTGNENKVTAVTKMNAQSSRSHTICTIYLG-----------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSL 238 (279)
Q Consensus 170 ~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~-----------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL 238 (279)
.+|..|..+|..++|.+|..|||||+||+|++. ..|+|+|||||||||..+.+..+.+++|++.||+||
T Consensus 189 ~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL 268 (334)
T cd01375 189 NLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSL 268 (334)
T ss_pred HHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhH
Confidence 999999999999999999999999999999997 348999999999999999999999999999999999
Q ss_pred chhhhhHHHhcCch
Q psy7226 239 HYLEQEEEEEKGKE 252 (279)
Q Consensus 239 ~aL~~vi~aL~~~~ 252 (279)
++|++||.+|++++
T Consensus 269 ~~L~~vi~~l~~~~ 282 (334)
T cd01375 269 SFLEQVINALSEKA 282 (334)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999886
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=9.6e-55 Score=400.80 Aligned_cols=208 Identities=35% Similarity=0.514 Sum_probs=194.6
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh---------HHHHHHHHHHHHHcCc-
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS---------AMIMKTLQHVMQRCNK- 94 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~---------Gii~r~l~~lf~~~~~- 94 (279)
.+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+ |||||++++||..+..
T Consensus 47 ~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~ 126 (333)
T cd01371 47 PKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKA 126 (333)
T ss_pred CceeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhc
Confidence 567999999999999999999999999999999999999999999999999997 7999999999998754
Q ss_pred ----cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhcccccccee
Q psy7226 95 ----DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQ 170 (279)
Q Consensus 95 ----~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~ 170 (279)
+.|.|||+|||+|+++|||++. ....+.+++++.+++++.|++++.|.+++|+..
T Consensus 127 ~~~~~~v~~S~~Eiy~e~v~DLL~~~---------------------~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~ 185 (333)
T cd01371 127 ENVQFLVRVSYLEIYNEEVRDLLGKD---------------------QKKKLELKERPDRGVYVKDLSMFVVKNAEEMDK 185 (333)
T ss_pred cCccEEEEEEEEEeeCCeeeeCCCCC---------------------CCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHH
Confidence 7899999999999999999843 224677889999999999999999999999999
Q ss_pred EEEecccceeeEEEeecccccCceeeeeeehh------------hhhhhhhccccCccceecccchhhhhhhhccccccc
Q psy7226 171 LIVTGNENKVTAVTKMNAQSSRSHTICTIYLG------------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSL 238 (279)
Q Consensus 171 ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~------------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL 238 (279)
+|..|.++|..++|.+|..|||||+||+|+|. ..|+|+|||||||||..+.+..+.+++|+..||+||
T Consensus 186 ~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL 265 (333)
T cd01371 186 LMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSL 265 (333)
T ss_pred HHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHH
Confidence 99999999999999999999999999999996 258999999999999999999999999999999999
Q ss_pred chhhhhHHHhcCchh
Q psy7226 239 HYLEQEEEEEKGKEE 253 (279)
Q Consensus 239 ~aL~~vi~aL~~~~~ 253 (279)
++|++||.+|++++.
T Consensus 266 ~~L~~vi~al~~~~~ 280 (333)
T cd01371 266 SALGNVISALVDGKS 280 (333)
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999997654
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=2.3e-54 Score=397.21 Aligned_cols=207 Identities=35% Similarity=0.511 Sum_probs=195.5
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh---------HHHHHHHHHHHHHcCc-
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS---------AMIMKTLQHVMQRCNK- 94 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~---------Gii~r~l~~lf~~~~~- 94 (279)
.+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||+|||||||||+ ||+||++++||+.+..
T Consensus 42 ~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~ 121 (325)
T cd01369 42 GKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSM 121 (325)
T ss_pred ceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhc
Confidence 679999999999999999999999999999999999999999999999999996 8999999999998754
Q ss_pred -----cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccccccce
Q psy7226 95 -----DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAV 169 (279)
Q Consensus 95 -----~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~ 169 (279)
+.|++||+|||+|.++|||++. ...+.+++++.+++++.|++++.|.|++|+.
T Consensus 122 ~~~~~~~v~~S~~EIy~e~v~DLL~~~----------------------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~ 179 (325)
T cd01369 122 DENLEFHVKVSYLEIYMEKIRDLLDVS----------------------KDNLQVHEDKNRGVYVKGLTERFVSSPEEVL 179 (325)
T ss_pred cCCceEEEEEEEEEEECCChhhcccCc----------------------cCCceEEEcCCCCEEEcCCEEEEcCCHHHHH
Confidence 7899999999999999999843 1567888899999999999999999999999
Q ss_pred eEEEecccceeeEEEeecccccCceeeeeeehh---------hhhhhhhccccCccceecccchhhhhhhhcccccccch
Q psy7226 170 QLIVTGNENKVTAVTKMNAQSSRSHTICTIYLG---------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHY 240 (279)
Q Consensus 170 ~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~---------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~a 240 (279)
++|..|.++|.+++|.+|..|||||+||+|+|. ..|+|+||||||+||..+.+..+.+++|+..||+||++
T Consensus 180 ~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~ 259 (325)
T cd01369 180 EVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSA 259 (325)
T ss_pred HHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHH
Confidence 999999999999999999999999999999996 46899999999999999999999999999999999999
Q ss_pred hhhhHHHhcCchh
Q psy7226 241 LEQEEEEEKGKEE 253 (279)
Q Consensus 241 L~~vi~aL~~~~~ 253 (279)
|++||.+|++++.
T Consensus 260 L~~vi~aL~~~~~ 272 (325)
T cd01369 260 LGNVINALTDGKS 272 (325)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999998763
No 17
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=4.9e-54 Score=398.98 Aligned_cols=210 Identities=33% Similarity=0.520 Sum_probs=195.0
Q ss_pred eceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh-----------------HHHHHHHH
Q psy7226 24 DHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS-----------------AMIMKTLQ 86 (279)
Q Consensus 24 ~~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~-----------------Gii~r~l~ 86 (279)
..+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+ |||||+++
T Consensus 46 ~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~ 125 (352)
T cd01364 46 STKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALY 125 (352)
T ss_pred cceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHH
Confidence 3578999999999999999999999999999999999999999999999999995 79999999
Q ss_pred HHHHHcCc----cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCC--CCCCcccccchhh
Q psy7226 87 HVMQRCNK----DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPAS--PGNGRSAASLTVK 160 (279)
Q Consensus 87 ~lf~~~~~----~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~ 160 (279)
+||+.+.. +.|++||+|||+|+++|||++.. ....++.++++ ..+++++.|++++
T Consensus 126 ~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~-------------------~~~~~l~i~e~~~~~~g~~v~gl~~~ 186 (352)
T cd01364 126 QLFEKLESQNTEYSVKVSYLELYNEELFDLLSSES-------------------DLNKPLRIFDDTNNKGGVVIQGLEEI 186 (352)
T ss_pred HHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCcc-------------------ccCccceEEeccCcCCCEEeCCcEEE
Confidence 99988864 88999999999999999998542 12356788888 5889999999999
Q ss_pred hccccccceeEEEecccceeeEEEeecccccCceeeeeeehh------------hhhhhhhccccCccceecccchhhhh
Q psy7226 161 KLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYLG------------AMAKLHLVDLAGSEQLFSLSDNYLLR 228 (279)
Q Consensus 161 ~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~------------~~s~l~~VDLAGsEr~~~~~~~g~r~ 228 (279)
.|.+++|+.++|..|.++|.+++|.+|..|||||+||+|++. ..|+|+||||||+||..+.++.+.++
T Consensus 187 ~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~ 266 (352)
T cd01364 187 TVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRA 266 (352)
T ss_pred EeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccEEEEEEEEEECCCccccccccCcchhh
Confidence 999999999999999999999999999999999999999986 25899999999999999999999999
Q ss_pred hhhcccccccchhhhhHHHhcCch
Q psy7226 229 NEARKINLSLHYLEQEEEEEKGKE 252 (279)
Q Consensus 229 ~E~~~IN~SL~aL~~vi~aL~~~~ 252 (279)
+|+..||+||++|++||.+|++++
T Consensus 267 ~e~~~iN~SL~~L~~vi~al~~~~ 290 (352)
T cd01364 267 REAGNINQSLLTLGRVINALVEKS 290 (352)
T ss_pred HHHhhhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999765
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=4.3e-54 Score=394.73 Aligned_cols=205 Identities=33% Similarity=0.478 Sum_probs=194.4
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh------HHHHHHHHHHHHHcCc----
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------AMIMKTLQHVMQRCNK---- 94 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~------Gii~r~l~~lf~~~~~---- 94 (279)
.+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||+|||||||||+ ||+||++++||..+..
T Consensus 39 ~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~ 118 (321)
T cd01374 39 GQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDR 118 (321)
T ss_pred CeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCc
Confidence 689999999999999999999999999999999999999999999999999999 9999999999998754
Q ss_pred -cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccccccceeEEE
Q psy7226 95 -DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIV 173 (279)
Q Consensus 95 -~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~ 173 (279)
+.|++||+|||+|+++|||++.. .++.+++++.+++++.|++++.|.|++|+.++|.
T Consensus 119 ~~~v~~S~~Eiy~e~v~DLL~~~~----------------------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~ 176 (321)
T cd01374 119 EFLLRVSYLEIYNEKIKDLLSPSP----------------------QELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIA 176 (321)
T ss_pred eEEEEEEEEEEEcCEeEEccCCCC----------------------CCceEEECCCCCEEeCCceEEEeCCHHHHHHHHH
Confidence 68999999999999999998542 5688889999999999999999999999999999
Q ss_pred ecccceeeEEEeecccccCceeeeeeehh------------hhhhhhhccccCccceecccchhhhhhhhcccccccchh
Q psy7226 174 TGNENKVTAVTKMNAQSSRSHTICTIYLG------------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYL 241 (279)
Q Consensus 174 ~g~~~R~~~~t~~n~~SSRSH~i~~i~v~------------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~aL 241 (279)
.|.++|..++|.+|..|||||+||+|++. ..|+|+||||||+||..+.+ .+.+++|+..||+||++|
T Consensus 177 ~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L 255 (321)
T cd01374 177 RGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTL 255 (321)
T ss_pred HHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHH
Confidence 99999999999999999999999999997 23799999999999999988 899999999999999999
Q ss_pred hhhHHHhcCch
Q psy7226 242 EQEEEEEKGKE 252 (279)
Q Consensus 242 ~~vi~aL~~~~ 252 (279)
++||.+|++++
T Consensus 256 ~~vi~al~~~~ 266 (321)
T cd01374 256 GTVISKLSEGK 266 (321)
T ss_pred HHHHHHHHhcC
Confidence 99999999986
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.5e-53 Score=394.07 Aligned_cols=211 Identities=34% Similarity=0.507 Sum_probs=197.0
Q ss_pred eceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh------------HHHHHHHHHHHHH
Q psy7226 24 DHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------------AMIMKTLQHVMQR 91 (279)
Q Consensus 24 ~~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~------------Gii~r~l~~lf~~ 91 (279)
+.+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+ |||||++++||..
T Consensus 38 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~ 117 (341)
T cd01372 38 TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKK 117 (341)
T ss_pred CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999999996 6999999999998
Q ss_pred cCc------cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhcccc
Q psy7226 92 CNK------DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSL 165 (279)
Q Consensus 92 ~~~------~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~ 165 (279)
+.. +.|.+||+|||+|+++|||++.. .....+.+++++.+++++.|++++.|.++
T Consensus 118 ~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~-------------------~~~~~l~i~e~~~~~~~i~gl~~~~v~s~ 178 (341)
T cd01372 118 IDEKKDEPDFQLKVSFLELYNEEVRDLLSPST-------------------SEKSPIQIREDSKGNIIIVGLTEVTVNSA 178 (341)
T ss_pred HHhccccceEEEEEEEEEeECCeeecCCCCcc-------------------cCCCCceEEECCCCCEecCCCEEEEECCH
Confidence 864 78999999999999999998542 12367888999999999999999999999
Q ss_pred ccceeEEEecccceeeEEEeecccccCceeeeeeehh-------------------hhhhhhhccccCccceecccchhh
Q psy7226 166 NSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYLG-------------------AMAKLHLVDLAGSEQLFSLSDNYL 226 (279)
Q Consensus 166 ~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~-------------------~~s~l~~VDLAGsEr~~~~~~~g~ 226 (279)
+|++++|..|..+|...+|.+|..|||||+||+|+|. ..|+|+||||||+|+..+.+..+.
T Consensus 179 ~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~ 258 (341)
T cd01372 179 QEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGD 258 (341)
T ss_pred HHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCcccccccCchh
Confidence 9999999999999999999999999999999999995 247899999999999999999999
Q ss_pred hhhhhcccccccchhhhhHHHhcCchh
Q psy7226 227 LRNEARKINLSLHYLEQEEEEEKGKEE 253 (279)
Q Consensus 227 r~~E~~~IN~SL~aL~~vi~aL~~~~~ 253 (279)
+++|+..||+||++|++||++|+.++.
T Consensus 259 ~~~e~~~in~sl~aL~~vi~al~~~~~ 285 (341)
T cd01372 259 RLKEGISINSGLLALGNVISALGDESK 285 (341)
T ss_pred HhHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998764
No 20
>KOG0247|consensus
Probab=100.00 E-value=1.8e-52 Score=399.61 Aligned_cols=217 Identities=29% Similarity=0.456 Sum_probs=197.3
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh------HHHHHHHHHHHHHcCc----
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------AMIMKTLQHVMQRCNK---- 94 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~------Gii~r~l~~lf~~~~~---- 94 (279)
.+.|.|-+||+|+++|.+||+.++.|+|.+++-|.|..+|+||.|||||||||. ||+||++..||..++.
T Consensus 80 e~~fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~ 159 (809)
T KOG0247|consen 80 EKKFSFTKVFGPSVTQADVFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAK 159 (809)
T ss_pred eeEeeeeeecCCCccHHHHHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceecc
Confidence 567999999999999999999999999999999999999999999999999998 8999999999987654
Q ss_pred ------------------------------------------------------------------cchhhhHHHHhhhh
Q psy7226 95 ------------------------------------------------------------------DDVYMSYLQLYSEK 108 (279)
Q Consensus 95 ------------------------------------------------------------------~~v~vS~~EIy~E~ 108 (279)
|.|+|||+|||||.
T Consensus 160 k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~ 239 (809)
T KOG0247|consen 160 KPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNY 239 (809)
T ss_pred CceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHH
Confidence 45999999999999
Q ss_pred hhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccccccceeEEEecccceeeEEEeecc
Q psy7226 109 CYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNA 188 (279)
Q Consensus 109 v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~ 188 (279)
|||||.+...- ...+....++++.++..+|.|++++.|.+.+||+.+|+.|.++|+.++|..|.
T Consensus 240 iYDLLe~~s~q----------------~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~ 303 (809)
T KOG0247|consen 240 IYDLLEDASFQ----------------GKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNA 303 (809)
T ss_pred HHHhhcccccc----------------chhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccc
Confidence 99999854210 11112366788999999999999999999999999999999999999999999
Q ss_pred cccCceeeeeeehh-----------hhhhhhhccccCccceecccchhhhhhhhcccccccchhhhhHHHhcCchhHHHH
Q psy7226 189 QSSRSHTICTIYLG-----------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQEEEEEKGKEEEEEE 257 (279)
Q Consensus 189 ~SSRSH~i~~i~v~-----------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~ 257 (279)
.|||||+||+|.+- ..|.|.|||||||||..+++++|.|++|+.+||.||++||+||.+|.+++.....
T Consensus 304 ~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~ 383 (809)
T KOG0247|consen 304 NSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQ 383 (809)
T ss_pred cccccceeEEEEeeecccccccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999986 5688999999999999999999999999999999999999999999998765543
No 21
>KOG0246|consensus
Probab=100.00 E-value=1e-52 Score=391.82 Aligned_cols=223 Identities=29% Similarity=0.428 Sum_probs=207.0
Q ss_pred cccccccceeEEEEeeceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh----------
Q psy7226 9 FQNRERQQTKIWLFFDHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS---------- 78 (279)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~---------- 78 (279)
+-..+...-+++-|++++.|.||++||+.+++++||..+++|||..+|+|--+|+||||||||||||||.
T Consensus 241 ~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~ 320 (676)
T KOG0246|consen 241 VVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDC 320 (676)
T ss_pred EeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccc
Confidence 3345577888899999999999999999999999999999999999999999999999999999999994
Q ss_pred --HHHHHHHHHHHHHcCc-------cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCC
Q psy7226 79 --AMIMKTLQHVMQRCNK-------DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPG 149 (279)
Q Consensus 79 --Gii~r~l~~lf~~~~~-------~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (279)
||...+.+++|..+.. ..|++||||||+.++||||++. ..+.+.+|.+
T Consensus 321 s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k-----------------------~KLrvLEDg~ 377 (676)
T KOG0246|consen 321 SKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLNDK-----------------------KKLRVLEDGN 377 (676)
T ss_pred cccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhccc-----------------------cceEEeecCC
Confidence 8999999999988876 7899999999999999999843 6788899999
Q ss_pred CCcccccchhhhccccccceeEEEecccceeeEEEeecccccCceeeeeeehh------hhhhhhhccccCccceec-cc
Q psy7226 150 NGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYLG------AMAKLHLVDLAGSEQLFS-LS 222 (279)
Q Consensus 150 ~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~------~~s~l~~VDLAGsEr~~~-~~ 222 (279)
..++|.||++..|.+.+|++.+|..|+..|+++.|..|+.|||||+||+|.+. ..|++.||||||+||-.. +.
T Consensus 378 QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~~~k~hGKfSlIDLAGnERGaDts~ 457 (676)
T KOG0246|consen 378 QQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHGEFKLHGKFSLIDLAGNERGADTSS 457 (676)
T ss_pred ceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCCcceeEeEEEEEEccCCccCCcccc
Confidence 99999999999999999999999999999999999999999999999999997 568999999999999775 44
Q ss_pred chhhhhhhhcccccccchhhhhHHHhcCchhH
Q psy7226 223 DNYLLRNEARKINLSLHYLEQEEEEEKGKEEE 254 (279)
Q Consensus 223 ~~g~r~~E~~~IN~SL~aL~~vi~aL~~~~~~ 254 (279)
+..+...||+.|||||+||..||+||..++.|
T Consensus 458 adRqtRlEGAEINKSLLALKECIRaLg~nk~H 489 (676)
T KOG0246|consen 458 ADRQTRLEGAEINKSLLALKECIRALGRNKSH 489 (676)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHhcCCCCC
Confidence 56788899999999999999999999998875
No 22
>KOG0241|consensus
Probab=100.00 E-value=1.4e-51 Score=398.47 Aligned_cols=211 Identities=30% Similarity=0.421 Sum_probs=198.3
Q ss_pred eeceeEeeecccCCC-------CCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh------HHHHHHHHHHH
Q psy7226 23 FDHQVFIFDNIFGPN-------DSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------AMIMKTLQHVM 89 (279)
Q Consensus 23 ~~~~~f~FD~Vf~~~-------a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~------Gii~r~l~~lf 89 (279)
...++|.||++|.+. +.|+.||+.++..+|+.+|+|||+||||||||||||||||. |||||.+..||
T Consensus 50 k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lF 129 (1714)
T KOG0241|consen 50 KGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLF 129 (1714)
T ss_pred CCCceeecccccccCCccccccccchhHHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHH
Confidence 346799999999776 57999999999999999999999999999999999999998 89999999999
Q ss_pred HHcCc-------cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhc
Q psy7226 90 QRCNK-------DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKL 162 (279)
Q Consensus 90 ~~~~~-------~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v 162 (279)
.++.. ++|.+||+|||||+++|||.|+. ....+.++++.-.|.++.||+...|
T Consensus 130 e~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~--------------------ssqtlkVrehsvlGp~vdGLS~laV 189 (1714)
T KOG0241|consen 130 ERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKG--------------------SSQTLKVREHSVLGPYVDGLSQLAV 189 (1714)
T ss_pred HHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCC--------------------CcceeEEeecccccccccchhhhhc
Confidence 99876 89999999999999999999763 2267889999999999999999999
Q ss_pred cccccceeEEEecccceeeEEEeecccccCceeeeeeehh-------------hhhhhhhccccCccceecccchhhhhh
Q psy7226 163 DSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYLG-------------AMAKLHLVDLAGSEQLFSLSDNYLLRN 229 (279)
Q Consensus 163 ~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~-------------~~s~l~~VDLAGsEr~~~~~~~g~r~~ 229 (279)
.|++|+..++..|.++|++++|.||..|||||+||.|.++ ..|||++||||||||..++++.|.|++
T Consensus 190 ~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlk 269 (1714)
T KOG0241|consen 190 TSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLK 269 (1714)
T ss_pred ccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhh
Confidence 9999999999999999999999999999999999999986 679999999999999999999999999
Q ss_pred hhcccccccchhhhhHHHhcCchh
Q psy7226 230 EARKINLSLHYLEQEEEEEKGKEE 253 (279)
Q Consensus 230 E~~~IN~SL~aL~~vi~aL~~~~~ 253 (279)
|+.+||+||++||.||.||+++..
T Consensus 270 egsNinkSLttLglVIsaLadq~n 293 (1714)
T KOG0241|consen 270 EGSNINKSLTTLGLVISALADQKN 293 (1714)
T ss_pred hcCCcchhhHHHHHHHHHHHHhhc
Confidence 999999999999999999998744
No 23
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=3.1e-52 Score=383.61 Aligned_cols=207 Identities=33% Similarity=0.489 Sum_probs=193.4
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh------HHHHHHHHHHHHHcCc----
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------AMIMKTLQHVMQRCNK---- 94 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~------Gii~r~l~~lf~~~~~---- 94 (279)
.+.|.||+||+++++|++||+. +.|+|+++++|+|+||||||+|||||||||+ ||+|+++++||..+..
T Consensus 44 ~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~ 122 (329)
T cd01366 44 KKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEK 122 (329)
T ss_pred ceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhcc
Confidence 3689999999999999999998 5999999999999999999999999999997 7999999999987654
Q ss_pred ---cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccccccceeE
Q psy7226 95 ---DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQL 171 (279)
Q Consensus 95 ---~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~l 171 (279)
+.|++||+|||+|+++|||++.. ....++.+++++.+++++.|++++.|.|++|+.++
T Consensus 123 ~~~~~v~~S~~EIy~e~v~DLL~~~~-------------------~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~ 183 (329)
T cd01366 123 GWSYTITASMLEIYNETIRDLLATKP-------------------APKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRL 183 (329)
T ss_pred CceEEEEEEEEEEECCEeEECCCCCc-------------------CCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHH
Confidence 67999999999999999998541 22367888899999999999999999999999999
Q ss_pred EEecccceeeEEEeecccccCceeeeeeehh---------hhhhhhhccccCccceecccchhhhhhhhcccccccchhh
Q psy7226 172 IVTGNENKVTAVTKMNAQSSRSHTICTIYLG---------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLE 242 (279)
Q Consensus 172 l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~---------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~aL~ 242 (279)
|..|..+|....|.+|..|||||+||+|+|. ..|+|+||||||+|+..+.++.+.+++|+..||+||++|+
T Consensus 184 l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~ 263 (329)
T cd01366 184 LNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALG 263 (329)
T ss_pred HHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHH
Confidence 9999999999999999999999999999996 4689999999999999999999999999999999999999
Q ss_pred hhHHHhcCc
Q psy7226 243 QEEEEEKGK 251 (279)
Q Consensus 243 ~vi~aL~~~ 251 (279)
+||.+|+.+
T Consensus 264 ~vl~~l~~~ 272 (329)
T cd01366 264 DVISALRSK 272 (329)
T ss_pred HHHHHHhcC
Confidence 999999986
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=5.4e-52 Score=382.77 Aligned_cols=215 Identities=36% Similarity=0.513 Sum_probs=194.3
Q ss_pred EEEEeeceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehH--------HHHHHHHHHHH
Q psy7226 19 IWLFFDHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSA--------MIMKTLQHVMQ 90 (279)
Q Consensus 19 ~~~~~~~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~G--------ii~r~l~~lf~ 90 (279)
.......+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+| |+|+++++||.
T Consensus 34 ~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~ 113 (335)
T PF00225_consen 34 SNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFS 113 (335)
T ss_dssp EEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHH
T ss_pred ccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEeeccccccccccccccccccccchhhhHHHHHhh
Confidence 3344457799999999999999999999999999999999999999999999999999995 99999999999
Q ss_pred HcCc--------cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCC-cccccchhhh
Q psy7226 91 RCNK--------DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNG-RSAASLTVKK 161 (279)
Q Consensus 91 ~~~~--------~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~ 161 (279)
.+.. +.|+|||+|||+|+++|||++.. .....++.+++++..| +++.|++++.
T Consensus 114 ~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~------------------~~~~~~l~i~~~~~~g~~~i~~l~~~~ 175 (335)
T PF00225_consen 114 QIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNN------------------SKSRKPLKIREDSNKGSVYIKGLTEVE 175 (335)
T ss_dssp HHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTS------------------SSTTSEBEEEEETTTEEEEETTSEEEE
T ss_pred hhccccccccccccccccchhhhhhhhhhhcCccc------------------cccccccceeeccccccceeecccccc
Confidence 8753 68999999999999999999652 1112467888888766 9999999999
Q ss_pred ccccccceeEEEecccceeeEEEeecccccCceeeeeeehh-------------hhhhhhhccccCccceecccc-hhhh
Q psy7226 162 LDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYLG-------------AMAKLHLVDLAGSEQLFSLSD-NYLL 227 (279)
Q Consensus 162 v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~-------------~~s~l~~VDLAGsEr~~~~~~-~g~r 227 (279)
|.+++|+.++|..|.++|....|.+|..|||||+||+|+|. ..|+|+||||||+|+..+.++ .+.+
T Consensus 176 v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~ 255 (335)
T PF00225_consen 176 VKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLAGSERLKKSGASDGQR 255 (335)
T ss_dssp ESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEESTGGCGCSSSSHHH
T ss_pred ccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeeccccccccccccccccc
Confidence 99999999999999999999999999999999999999997 247899999999999999886 4888
Q ss_pred hhhhcccccccchhhhhHHHhcCc
Q psy7226 228 RNEARKINLSLHYLEQEEEEEKGK 251 (279)
Q Consensus 228 ~~E~~~IN~SL~aL~~vi~aL~~~ 251 (279)
++|+..||+||.+|++||.+|+.+
T Consensus 256 ~~e~~~in~Sl~~L~~vi~~L~~~ 279 (335)
T PF00225_consen 256 LKESSNINKSLSALGNVIRALAQG 279 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccccceecchhhhhhhhHhhhhcc
Confidence 999999999999999999999998
No 25
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.9e-50 Score=371.49 Aligned_cols=208 Identities=37% Similarity=0.552 Sum_probs=195.7
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehH------HHHHHHHHHHHHcCc----
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSA------MIMKTLQHVMQRCNK---- 94 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~G------ii~r~l~~lf~~~~~---- 94 (279)
.+.|.||+||+++++|++||+.++.|+|+++++|+|+|||+||+|||||||||+| |+|+++++||..+..
T Consensus 44 ~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~ 123 (328)
T cd00106 44 PKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEK 123 (328)
T ss_pred ceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhcccc
Confidence 5899999999999999999999999999999999999999999999999999995 999999999998754
Q ss_pred ---cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccccccceeE
Q psy7226 95 ---DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQL 171 (279)
Q Consensus 95 ---~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~l 171 (279)
+.|.+||+|||+|+++|||++.. ...++.+++++.+++++.|++++.|.|++|++++
T Consensus 124 ~~~~~v~~S~~Ei~~e~v~DLL~~~~--------------------~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~ 183 (328)
T cd00106 124 NKSFSVSVSYLEIYNEKVYDLLSPEP--------------------PSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSL 183 (328)
T ss_pred CceEEEEEEEEEEECCEeEECCCCCC--------------------CCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHH
Confidence 68999999999999999998531 2367888999999999999999999999999999
Q ss_pred EEecccceeeEEEeecccccCceeeeeeehh-----------hhhhhhhccccCccceecccchhhhhhhhcccccccch
Q psy7226 172 IVTGNENKVTAVTKMNAQSSRSHTICTIYLG-----------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHY 240 (279)
Q Consensus 172 l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~-----------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~a 240 (279)
|..|..+|....|.+|..|||||+||+|++. ..|+|+||||||+|+..+.+..+.+++|++.||+||.+
T Consensus 184 l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~ 263 (328)
T cd00106 184 LQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSA 263 (328)
T ss_pred HHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHH
Confidence 9999999999999999999999999999996 25899999999999999998999999999999999999
Q ss_pred hhhhHHHhcCch
Q psy7226 241 LEQEEEEEKGKE 252 (279)
Q Consensus 241 L~~vi~aL~~~~ 252 (279)
|++||.+|+.++
T Consensus 264 L~~vl~~l~~~~ 275 (328)
T cd00106 264 LGNVISALSSGQ 275 (328)
T ss_pred HHHHHHHHHhcC
Confidence 999999999876
No 26
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=3.5e-50 Score=370.82 Aligned_cols=205 Identities=39% Similarity=0.552 Sum_probs=194.4
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh------HHHHHHHHHHHHHcCc----
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------AMIMKTLQHVMQRCNK---- 94 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~------Gii~r~l~~lf~~~~~---- 94 (279)
.+.|.||+||+++++|++||+.++.|+|+.+++|+|+|||+||+|||||||||+ ||+|+++++||..+..
T Consensus 45 ~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~ 124 (335)
T smart00129 45 EKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEG 124 (335)
T ss_pred CeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccC
Confidence 578999999999999999999999999999999999999999999999999999 9999999999997754
Q ss_pred --cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccccccceeEE
Q psy7226 95 --DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLI 172 (279)
Q Consensus 95 --~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll 172 (279)
+.|++||+|||+|.++|||++. ..++.+++++.+++++.|++++.|.|++|+.++|
T Consensus 125 ~~~~v~~S~~ei~~e~v~DLL~~~----------------------~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l 182 (335)
T smart00129 125 WQFQVKVSYLEIYNEKIRDLLNPS----------------------PKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLL 182 (335)
T ss_pred ceEEEEEEEEEEECCEEEECcCCC----------------------CCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHH
Confidence 7799999999999999999843 2568888999999999999999999999999999
Q ss_pred EecccceeeEEEeecccccCceeeeeeehh-----------hhhhhhhccccCccceecccchhhhhhhhcccccccchh
Q psy7226 173 VTGNENKVTAVTKMNAQSSRSHTICTIYLG-----------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYL 241 (279)
Q Consensus 173 ~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~-----------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~aL 241 (279)
..|..+|.+.+|.+|..|||||+||+|++. ..|+|+||||||+||..+.++.+.+++|+..||+||.+|
T Consensus 183 ~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L 262 (335)
T smart00129 183 EKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSAL 262 (335)
T ss_pred HHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHH
Confidence 999999999999999999999999999998 369999999999999999999999999999999999999
Q ss_pred hhhHHHhcCc
Q psy7226 242 EQEEEEEKGK 251 (279)
Q Consensus 242 ~~vi~aL~~~ 251 (279)
++||.+|++.
T Consensus 263 ~~~l~~l~~~ 272 (335)
T smart00129 263 GNVINALADG 272 (335)
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 27
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-45 Score=357.31 Aligned_cols=205 Identities=38% Similarity=0.552 Sum_probs=192.5
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh------HHHHHHHHHHHHHcCc----
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------AMIMKTLQHVMQRCNK---- 94 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~------Gii~r~l~~lf~~~~~---- 94 (279)
..+|.||+||++.++|++||+..+.|+++.++.|||+||||||||||||||||. ||||+++..||..+..
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~ 134 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMT 134 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccC
Confidence 446999999999999999999999999999999999999999999999999997 8999999999997543
Q ss_pred --cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccccccceeEE
Q psy7226 95 --DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLI 172 (279)
Q Consensus 95 --~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll 172 (279)
+.+.+||+|||||+++|||.+.. ..+.++++...++.+.+++...+.+.++++.+|
T Consensus 135 ~~~~v~is~lEiYnEk~~DLl~~~~----------------------~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l 192 (568)
T COG5059 135 KDFAVSISYLEIYNEKIYDLLSPNE----------------------ESLNIREDSLLGVKVAGLTEKHVSSKEEILDLL 192 (568)
T ss_pred cceeeEeehhHHHhhHHHhhccCcc----------------------ccccccccCCCceEeecceEEecCChHHHHHHH
Confidence 88999999999999999998553 226788999999999999999999999999999
Q ss_pred EecccceeeEEEeecccccCceeeeeeehh---------hhhhhhhccccCccceecccchhhhhhhhcccccccchhhh
Q psy7226 173 VTGNENKVTAVTKMNAQSSRSHTICTIYLG---------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQ 243 (279)
Q Consensus 173 ~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~---------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~aL~~ 243 (279)
.+|..+|+++.|.+|..|||||+||++.+. ..+++.+|||||||++..++..+.|++|+..||+||.+||+
T Consensus 193 ~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~ 272 (568)
T COG5059 193 RKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGN 272 (568)
T ss_pred HHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHH
Confidence 999999999999999999999999999997 34689999999999999999999999999999999999999
Q ss_pred hHHHhcCc
Q psy7226 244 EEEEEKGK 251 (279)
Q Consensus 244 vi~aL~~~ 251 (279)
||.+|.+.
T Consensus 273 vI~~L~~~ 280 (568)
T COG5059 273 VINALGDK 280 (568)
T ss_pred HHHHHhcc
Confidence 99999974
No 28
>KOG0244|consensus
Probab=100.00 E-value=4.4e-46 Score=364.70 Aligned_cols=213 Identities=32% Similarity=0.415 Sum_probs=197.1
Q ss_pred EEEeeceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh----------HHHHHHHHHHH
Q psy7226 20 WLFFDHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS----------AMIMKTLQHVM 89 (279)
Q Consensus 20 ~~~~~~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~----------Gii~r~l~~lf 89 (279)
.....+..|.||+||+...+|.++|+.++.|+++.+|+|||++++|||||||||||||. |+|||++..+|
T Consensus 26 v~ig~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f 105 (913)
T KOG0244|consen 26 VAIGKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLF 105 (913)
T ss_pred eeecCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCceeecccccccccccCCcCcchHHHHH
Confidence 34455889999999999999999999999999999999999999999999999999997 99999999999
Q ss_pred HHcCc-----cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccc
Q psy7226 90 QRCNK-----DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDS 164 (279)
Q Consensus 90 ~~~~~-----~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s 164 (279)
.++.. +.|.++|+|||+|.|+||+.|.. ....+.+++ +.+++.+.++++..|.+
T Consensus 106 ~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~--------------------~~~~i~~~e-~~g~it~~glte~tv~~ 164 (913)
T KOG0244|consen 106 TRIGKTESFVFRITVSFVELYNEEVLDLLKPSR--------------------LKANIKLRE-PKGEITIRGLTEKTVRM 164 (913)
T ss_pred HHHHhhhccceeeeeeeeeccchhhhhhcChhh--------------------hhhceeccc-cCCceEEEeehHHHHHH
Confidence 99876 88999999999999999998432 123366666 77889999999999999
Q ss_pred cccceeEEEecccceeeEEEeecccccCceeeeeeehh----------hhhhhhhccccCccceecccchhhhhhhhccc
Q psy7226 165 LNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYLG----------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKI 234 (279)
Q Consensus 165 ~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~----------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~I 234 (279)
..++...+..|...|++++|.||..|||||+||++.++ .+++|+|||||||||.++++++|.|++||++|
T Consensus 165 ~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInI 244 (913)
T KOG0244|consen 165 KLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGINI 244 (913)
T ss_pred HHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccccccchhhhhhccCc
Confidence 99999999999999999999999999999999999997 35999999999999999999999999999999
Q ss_pred ccccchhhhhHHHhcCchh
Q psy7226 235 NLSLHYLEQEEEEEKGKEE 253 (279)
Q Consensus 235 N~SL~aL~~vi~aL~~~~~ 253 (279)
|.+|++||+||.||.+.+.
T Consensus 245 N~gLL~LgnVIsaLg~~kk 263 (913)
T KOG0244|consen 245 NGGLLALGNVISALGEAKK 263 (913)
T ss_pred chHHHHHHHHHHHHHhhhc
Confidence 9999999999999988765
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.9e-35 Score=251.25 Aligned_cols=130 Identities=38% Similarity=0.572 Sum_probs=119.8
Q ss_pred eehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh------HHHHHHHHHHHHHcCccchhhhHHHHhhhhhhhhcCCC
Q psy7226 43 IFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS------AMIMKTLQHVMQRCNKDDVYMSYLQLYSEKCYDLLNGN 116 (279)
Q Consensus 43 vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~------Gii~r~l~~lf~~~~~~~v~vS~~EIy~E~v~DLL~~~ 116 (279)
||+.++ |+|+.+++|+|+|||+||||||||||||+ ||+|+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999998 99999999999999999999999999998 888888766
Q ss_pred eeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccccccceeEEEecccceeeEEEeecccccCceee
Q psy7226 117 KEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTI 196 (279)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i 196 (279)
+++++..|..+|..+.|.+|..|||||+|
T Consensus 58 ---------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i 86 (186)
T cd01363 58 ---------------------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSV 86 (186)
T ss_pred ---------------------------------------------------HHHHHhhccccccccccCCCCccCcccEE
Confidence 44556678889999999999999999999
Q ss_pred eeeehh------------hhhhhhhccccCccceecccchhhhhhhhcccccccchhhhhHHHhcCchh
Q psy7226 197 CTIYLG------------AMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQEEEEEKGKEE 253 (279)
Q Consensus 197 ~~i~v~------------~~s~l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~aL~~vi~aL~~~~~ 253 (279)
|+|++. ..++|+||||||||+..+.+..+.+++|+..||+||++|++||.+|++++.
T Consensus 87 ~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~ 155 (186)
T cd01363 87 FRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDS 155 (186)
T ss_pred EEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 999996 358999999999999999999999999999999999999999999998753
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.05 E-value=2.9e-07 Score=90.78 Aligned_cols=198 Identities=20% Similarity=0.172 Sum_probs=127.0
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh----HHHHHHHHHHHHHcCc------
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS----AMIMKTLQHVMQRCNK------ 94 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~----Gii~r~l~~lf~~~~~------ 94 (279)
...|.||.+|.+...+..++... .-+++..++| +++|++++++++++|. ++....+...+.....
T Consensus 352 ~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 426 (568)
T COG5059 352 IEEIKFDLSEDRSEIEILVFREQ-SQLSQSSLSG----IFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGW 426 (568)
T ss_pred HHHHHhhhhhhhhhhhhHHHHHH-Hhhhhhhhhh----HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhhHH
Confidence 34688999999998888888776 7777777778 8999999999999997 4444554666655444
Q ss_pred -cchhhhHHHHhhhhhhhhcCCCeeeEEeceeeeccCCCccccCCCCCCCCCCCCCCCcccccchhhhccccccceeEEE
Q psy7226 95 -DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIV 173 (279)
Q Consensus 95 -~~v~vS~~EIy~E~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~ 173 (279)
+...+-++++|-....++........ . .........+.+. ...++. ......+.....
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~e~~~~~------------~--~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~- 485 (568)
T COG5059 427 KYKSTLQFLRIEIDRLLLLREEELSKK------------K--TKIHKLNKLRHDL-----SSLLSS-IPEETSDRVESE- 485 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCh------------H--HHHHHHHHHHHHH-----HHhhhh-cchhhhhhhhhh-
Confidence 44555566665222222222100000 0 0000000000000 000000 000001111111
Q ss_pred ecccceeeEEEeecccccCceeeeeeehh----hhhh--hhhccccCccceecccchhhhhhhhcccccccchhhhhHHH
Q psy7226 174 TGNENKVTAVTKMNAQSSRSHTICTIYLG----AMAK--LHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQEEEE 247 (279)
Q Consensus 174 ~g~~~R~~~~t~~n~~SSRSH~i~~i~v~----~~s~--l~~VDLAGsEr~~~~~~~g~r~~E~~~IN~SL~aL~~vi~a 247 (279)
.+...+..+.+..|..++|+|.+|..... ..+. +..|||||+||. .+...+.++++...+|++|..++.+|.+
T Consensus 486 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~ 564 (568)
T COG5059 486 KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTKELSLNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHA 564 (568)
T ss_pred hhccchhhcccchhhhhcccchhhhhcccchhhhhHHHHhhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhh
Confidence 45677888889999999999999988775 2222 699999999999 8899999999999999999999999998
Q ss_pred hc
Q psy7226 248 EK 249 (279)
Q Consensus 248 L~ 249 (279)
+.
T Consensus 565 ~~ 566 (568)
T COG5059 565 LG 566 (568)
T ss_pred cc
Confidence 75
No 31
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.75 E-value=0.0044 Score=59.87 Aligned_cols=76 Identities=25% Similarity=0.506 Sum_probs=49.6
Q ss_pred eeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHH-------------HHHHHHHc
Q psy7226 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKT-------------LQHVMQRC 92 (279)
Q Consensus 26 ~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~-------------l~~lf~~~ 92 (279)
..|....-|.|.-+|-+ .+..|++.+-+|...-++ .|.|||||||||..+|.++ ..+|+...
T Consensus 3 ~~F~l~s~f~PaGDQP~----AI~~Lv~gi~~g~~~QtL-LGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Ef 77 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE----AIAELVEGIENGLKHQTL-LGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEF 77 (663)
T ss_pred CceEeccCCCCCCCcHH----HHHHHHHHHhcCceeeEE-eeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHH
Confidence 35777778888888743 356677776666655444 4999999999998544432 22333333
Q ss_pred Cc------cchhhhHHHHhh
Q psy7226 93 NK------DDVYMSYLQLYS 106 (279)
Q Consensus 93 ~~------~~v~vS~~EIy~ 106 (279)
.+ +...+||+..|.
T Consensus 78 k~fFP~NaVEYFVSYYDYYQ 97 (663)
T COG0556 78 KEFFPENAVEYFVSYYDYYQ 97 (663)
T ss_pred HHhCcCcceEEEeeeccccC
Confidence 32 567778887764
No 32
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.58 E-value=0.0028 Score=55.17 Aligned_cols=56 Identities=27% Similarity=0.404 Sum_probs=32.8
Q ss_pred eeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHH
Q psy7226 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 26 ~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
..|+||.... ...++..|..+ ..+.+.--..+| .++-||++|+||||-|.++...+
T Consensus 3 ~~~tFdnfv~-g~~N~~a~~~~-~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~Ai~~~~ 58 (219)
T PF00308_consen 3 PKYTFDNFVV-GESNELAYAAA-KAIAENPGERYN-PLFLYGPSGLGKTHLLQAIANEA 58 (219)
T ss_dssp TT-SCCCS---TTTTHHHHHHH-HHHHHSTTTSSS-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCccccCCc-CCcHHHHHHHH-HHHHhcCCCCCC-ceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999774 34455565443 444433111233 47889999999999766665443
No 33
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.62 E-value=0.01 Score=53.77 Aligned_cols=36 Identities=33% Similarity=0.523 Sum_probs=30.5
Q ss_pred hHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHH
Q psy7226 48 LVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMK 83 (279)
Q Consensus 48 ~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r 83 (279)
+.|++..+.+--++.|+.-|+||||||+||.-||..
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~ 148 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLAAMIDY 148 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHH
Confidence 457788888999999999999999999998766543
No 34
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.39 E-value=0.028 Score=54.32 Aligned_cols=71 Identities=23% Similarity=0.313 Sum_probs=43.9
Q ss_pred ccccceeEEEEeeceeEeeec-----ccC---------CCCC----CcceehhhhHHhHHhhhcchhhhhhhhcccCCCc
Q psy7226 12 RERQQTKIWLFFDHQVFIFDN-----IFG---------PNDS----NETIFTEVLVPLINHMFNGINATLLAYGQTGGGK 73 (279)
Q Consensus 12 ~~~~~~~~~~~~~~~~f~FD~-----Vf~---------~~a~----Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGK 73 (279)
+-.|.+.+++.++++.+.|-- +|+ .... ++--|..--...+..++..-++.|+.-|+|||||
T Consensus 192 R~PQdGr~~~~~~~~~vd~RvStlP~~~GEkvVlRil~~~~~~l~l~~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGK 271 (500)
T COG2804 192 RLPQDGRIRLKLNGRKVDFRVSTLPTFYGEKVVLRILDKDQVILDLEKLGMSPFQLARLLRLLNRPQGLILVTGPTGSGK 271 (500)
T ss_pred cCCCCceEEEEeCCeeEEEEEecCCCCCCcEEEEEEeccccccCCHHHhCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCH
Confidence 446666777777766655541 222 2221 1111222224455677888888999999999999
Q ss_pred eEeehHHHH
Q psy7226 74 TYTVSAMIM 82 (279)
Q Consensus 74 TyTm~Gii~ 82 (279)
|.||+.++.
T Consensus 272 TTTLY~~L~ 280 (500)
T COG2804 272 TTTLYAALS 280 (500)
T ss_pred HHHHHHHHH
Confidence 999885543
No 35
>PRK06893 DNA replication initiation factor; Validated
Probab=94.33 E-value=0.021 Score=49.95 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=35.3
Q ss_pred eeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHH
Q psy7226 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 26 ~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
..++||..+..... ..+..+...+-.+++..++-||++|+||||.+..+...++
T Consensus 11 ~~~~fd~f~~~~~~------~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~ 64 (229)
T PRK06893 11 DDETLDNFYADNNL------LLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYL 64 (229)
T ss_pred CcccccccccCChH------HHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788988865421 1222233333356777789999999999998877655543
No 36
>PRK12377 putative replication protein; Provisional
Probab=93.13 E-value=0.027 Score=50.05 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=37.1
Q ss_pred EeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHH
Q psy7226 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 28 f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
.+||........|..++..+ ..+++.+..+. ..++-||++|+||||.+..|...++
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a-~~~a~~~~~~~-~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQA-KSIADELMTGC-TNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred CCcCCcccCChhHHHHHHHH-HHHHHHHHhcC-CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 36676554444555555543 56666655543 4577889999999999887766554
No 37
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=92.47 E-value=0.051 Score=44.54 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=20.1
Q ss_pred hhhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 60 NATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
..-++..++||||||++|..++.+...
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCcChhhhhhhhcccc
Confidence 444566789999999999876655554
No 38
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.45 E-value=0.034 Score=55.40 Aligned_cols=57 Identities=25% Similarity=0.301 Sum_probs=36.9
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHH
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
+..|+||..+-.. ++...|.. +..+++..-.++|. ||-||.+|+||||.+..|...+
T Consensus 282 ~~~~TFDnFvvG~-sN~~A~aa-a~avae~~~~~~Np-L~LyG~sGsGKTHLL~AIa~~a 338 (617)
T PRK14086 282 NPKYTFDTFVIGA-SNRFAHAA-AVAVAEAPAKAYNP-LFIYGESGLGKTHLLHAIGHYA 338 (617)
T ss_pred CCCCCHhhhcCCC-ccHHHHHH-HHHHHhCccccCCc-EEEECCCCCCHHHHHHHHHHHH
Confidence 4568999866333 34444433 34455443345665 7899999999999988665544
No 39
>PRK06526 transposase; Provisional
Probab=92.26 E-value=0.038 Score=49.24 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.5
Q ss_pred hhhhcccCCCceEeehHHHHHHH
Q psy7226 63 LLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
|+.||++|+||||.+.+|...++
T Consensus 101 lll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 101 VVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred EEEEeCCCCchHHHHHHHHHHHH
Confidence 68899999999999988765554
No 40
>PRK08116 hypothetical protein; Validated
Probab=91.93 E-value=0.04 Score=49.43 Aligned_cols=58 Identities=21% Similarity=0.360 Sum_probs=36.7
Q ss_pred eEeeecccCCCCCCcceehhhhHHhHHhhhc--chhhhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 27 VFIFDNIFGPNDSNETIFTEVLVPLINHMFN--GINATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 27 ~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~--G~n~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
.++||... .+..+...|.. +...++.+.. ..+..++-||++|+||||.+..|....++
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~ 140 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIE 140 (268)
T ss_pred hcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46677644 34444445544 3666665543 23456899999999999988776555443
No 41
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.88 E-value=0.033 Score=51.74 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=33.6
Q ss_pred eceeEeeecccCCCCCCcceehhhhHHhHHhhhc-chhhhhhhhcccCCCceEeehHHHH
Q psy7226 24 DHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFN-GINATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 24 ~~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~-G~n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
+.+.|.-|++.+.-...++-++.+ ...+..++. +...+++-||++|+|||+++.-++.
T Consensus 4 ~~~~l~~~~~p~~l~gRe~e~~~l-~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~ 62 (365)
T TIGR02928 4 NRDLLEPDYVPDRIVHRDEQIEEL-AKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMK 62 (365)
T ss_pred ChhhCCCCCCCCCCCCcHHHHHHH-HHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 344455555554334444444444 334444444 4556789999999999987654433
No 42
>PRK06620 hypothetical protein; Validated
Probab=91.83 E-value=0.019 Score=49.75 Aligned_cols=51 Identities=27% Similarity=0.401 Sum_probs=32.5
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchh---hhhhhhcccCCCceEeehH
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGIN---ATLLAYGQTGGGKTYTVSA 79 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n---~~i~aYG~tgSGKTyTm~G 79 (279)
+..|+||...... ++...|..+ ..+.+. . |+| -.++-||++|+||||.+..
T Consensus 10 ~~~~tfd~Fvvg~-~N~~a~~~~-~~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 10 SSKYHPDEFIVSS-SNDQAYNII-KNWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCCchhhEecc-cHHHHHHHH-HHHHHc-c-ccCCCcceEEEECCCCCCHHHHHHH
Confidence 4458899877444 345566555 333321 1 333 3489999999999998763
No 43
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.51 E-value=0.059 Score=47.27 Aligned_cols=54 Identities=9% Similarity=0.234 Sum_probs=33.8
Q ss_pred eeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHH
Q psy7226 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 26 ~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
..|+||..+.. .+...+..+ ..+.. ......++-||++|+||||.+..+...+.
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l-~~~~~---~~~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAAL-QNALR---QEHSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CcCCccccccC--ccHHHHHHH-HHHHh---CCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34678876643 455555443 33322 22224688999999999999886655443
No 44
>PRK07952 DNA replication protein DnaC; Validated
Probab=91.16 E-value=0.059 Score=47.76 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=34.2
Q ss_pred eEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHH
Q psy7226 27 VFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 27 ~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
..+||........|..++..+ ...++....+. ..++-+|++|+||||.+..|...+
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a-~~~~~~~~~~~-~~~~l~G~~GtGKThLa~aia~~l 123 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKA-RQYVEEFDGNI-ASFIFSGKPGTGKNHLAAAICNEL 123 (244)
T ss_pred CCccccccCCCchHHHHHHHH-HHHHHhhccCC-ceEEEECCCCCCHHHHHHHHHHHH
Confidence 356676543333444455443 44444443333 367888999999999888766544
No 45
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.13 E-value=0.063 Score=51.68 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=35.2
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHH
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
+..|+||.... ..++...|..+ ..+.+. -..+|. ++-||++|+||||.|..+....
T Consensus 99 ~~~~tFdnFv~-g~~n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ai~~~l 154 (440)
T PRK14088 99 NPDYTFENFVV-GPGNSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_pred CCCCccccccc-CCchHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHHHHHHHHH
Confidence 45688888774 34445555543 333332 112554 8999999999999887655443
No 46
>PRK05642 DNA replication initiation factor; Validated
Probab=91.03 E-value=0.11 Score=45.58 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=31.0
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcc---h-hhhhhhhcccCCCceEeehHHHH
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNG---I-NATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G---~-n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
+..|+||..+... + ..+...+....++ . ...++-||++|+||||-+..+..
T Consensus 13 ~~~~tfdnF~~~~--~-----~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~ 67 (234)
T PRK05642 13 RDDATFANYYPGA--N-----AAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACL 67 (234)
T ss_pred CCcccccccCcCC--h-----HHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3458899877432 2 2234444433322 1 23578899999999998776543
No 47
>PRK08727 hypothetical protein; Validated
Probab=90.38 E-value=0.091 Score=46.04 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=19.6
Q ss_pred hhhhhhcccCCCceEeehHHHHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
-.++-||++|+||||.+..+...+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~ 66 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAE 66 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999998876655443
No 48
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=90.21 E-value=0.095 Score=50.49 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=33.5
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHH
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
+..|+||.... ...+...|..+ ..+.+.--..+| .++-||++|+||||.+..+...+
T Consensus 116 ~~~~tfd~fv~-g~~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 116 NPKYTFDNFVV-GKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred CCCCccccccc-CCCcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 35677887442 23444444443 334332112334 47889999999999887665443
No 49
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=89.94 E-value=0.094 Score=49.73 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=32.1
Q ss_pred eeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHH
Q psy7226 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 26 ~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
..|+||.... ...+...|..+ ..+.+.--..+| .++-||++|+||||.+..+...+
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~~~-~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ai~~~l 160 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLHAIGNEI 160 (405)
T ss_pred CCCccccccc-CCcHHHHHHHH-HHHHhCcCccCC-eEEEECCCCCcHHHHHHHHHHHH
Confidence 4678887442 33444444333 333333111233 46789999999999876654433
No 50
>PRK06835 DNA replication protein DnaC; Validated
Probab=89.85 E-value=0.14 Score=47.37 Aligned_cols=37 Identities=30% Similarity=0.468 Sum_probs=26.7
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
...++.+-.+. -.++-||++|+||||.+.+|...++.
T Consensus 173 ~~f~~~f~~~~-~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 173 KNFIENFDKNN-ENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred HHHHHHHhccC-CcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 45565554443 56899999999999988877665543
No 51
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=89.76 E-value=0.074 Score=49.94 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=17.1
Q ss_pred chhhhhhhhcccCCCceEeehH
Q psy7226 58 GINATLLAYGQTGGGKTYTVSA 79 (279)
Q Consensus 58 G~n~~i~aYG~tgSGKTyTm~G 79 (279)
+....++-||++|+|||+++.-
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~ 74 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKK 74 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHH
Confidence 3445688999999999987553
No 52
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=89.71 E-value=0.12 Score=51.46 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=25.3
Q ss_pred hHHhhhcchhhhhhhhcccCCCceEeehHHHH
Q psy7226 51 LINHMFNGINATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 51 lv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
.+..++..-++.|+..|+||||||.||..++.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~ 338 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYTALN 338 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHHHHH
Confidence 44566667778888999999999999876554
No 53
>PRK09087 hypothetical protein; Validated
Probab=89.58 E-value=0.045 Score=47.85 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=30.0
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
...|+||..+..+. +..+|.. +.....-.+..++-||++||||||.+.
T Consensus 15 ~~~~~~~~Fi~~~~-N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 15 DPAYGRDDLLVTES-NRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCChhceeecCc-hHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 34578888774333 3445553 232222224457889999999999876
No 54
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=88.90 E-value=0.16 Score=42.65 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=20.6
Q ss_pred hhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
-.++-+|++|+||||...+|.-.++.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 34788999999999998887666554
No 55
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=88.76 E-value=0.12 Score=39.49 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=18.6
Q ss_pred hhhhcccCCCceEeehHHHHHHHHH
Q psy7226 63 LLAYGQTGGGKTYTVSAMIMKTLQH 87 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~r~l~~ 87 (279)
++.+|++|+|||+++...+.+....
T Consensus 3 ~~i~~~~G~GKT~~~~~~~~~~~~~ 27 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDS 27 (144)
T ss_pred EEEECCCCCchhHHHHHHHHHHHhc
Confidence 4567999999999987666554443
No 56
>PRK10436 hypothetical protein; Provisional
Probab=88.74 E-value=0.14 Score=49.61 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=24.2
Q ss_pred hHHhhhcchhhhhhhhcccCCCceEeehHHH
Q psy7226 51 LINHMFNGINATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 51 lv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii 81 (279)
.+..++..-++.|+..|+||||||.||..++
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l 239 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYSAL 239 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHHHH
Confidence 3455566677888999999999999987544
No 57
>PRK08181 transposase; Validated
Probab=88.65 E-value=0.16 Score=45.64 Aligned_cols=28 Identities=36% Similarity=0.679 Sum_probs=21.8
Q ss_pred cchhhhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 57 NGINATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 57 ~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
.|.| ++-||++|+||||.+.+|...+++
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHHHHHHHHH
Confidence 3444 788999999999998877665544
No 58
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.25 E-value=0.24 Score=42.47 Aligned_cols=53 Identities=21% Similarity=0.341 Sum_probs=32.2
Q ss_pred eeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHH
Q psy7226 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 26 ~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
..++||.... + .+..+++.+ ..+ +.......|+-||++|+|||+.+..+....
T Consensus 10 ~~~~~~~~~~-~-~~~~~~~~l-~~~---~~~~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 10 DDPTFDNFYA-G-GNAELLAAL-RQL---AAGKGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CchhhcCcCc-C-CcHHHHHHH-HHH---HhcCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3467777663 2 333333333 222 224556678999999999998876655443
No 59
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.17 E-value=0.16 Score=45.51 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=37.3
Q ss_pred eeEeeecccCCCC---------CCcceehhh-hHHhHHhhhcchhhhhhhhcccCCCceEeehHH
Q psy7226 26 QVFIFDNIFGPND---------SNETIFTEV-LVPLINHMFNGINATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 26 ~~f~FD~Vf~~~a---------~Q~~vf~~~-~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gi 80 (279)
-.|+....|..+. +.-.-|++. +.+.++.+.--.-+.|+-.|+|||||+.||..+
T Consensus 83 gRfRvnAf~qr~~~g~VlRrI~~~IPt~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmAaM 147 (375)
T COG5008 83 GRFRVNAFYQRGLAGLVLRRIETKIPTFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMAAM 147 (375)
T ss_pred ceEEeehhhhcCcchhhhhhhhccCCcHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHHHH
Confidence 3566666665443 223345555 456777777677778888899999999998744
No 60
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=88.10 E-value=0.16 Score=49.49 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=24.2
Q ss_pred hHHhhhcchhhhhhhhcccCCCceEeehHHHH
Q psy7226 51 LINHMFNGINATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 51 lv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
.+..++...++.|+..|+||||||.||..++.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a~L~ 264 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYAALS 264 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHh
Confidence 44455666667788889999999999876543
No 61
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.75 E-value=0.17 Score=43.82 Aligned_cols=53 Identities=19% Similarity=0.326 Sum_probs=31.5
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHH
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
.+.|+||..+... .+..... +..++.. ......++-||++|+||||.+..+..
T Consensus 12 ~~~~~~d~f~~~~--~~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ai~~ 64 (227)
T PRK08903 12 PPPPTFDNFVAGE--NAELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLLQALVA 64 (227)
T ss_pred CChhhhcccccCC--cHHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4458888877322 2223322 3444331 13345688999999999987665544
No 62
>PRK08939 primosomal protein DnaI; Reviewed
Probab=87.69 E-value=0.12 Score=47.33 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=28.6
Q ss_pred CCcceehhhhHHhHHhhhcc-hhhhhhhhcccCCCceEeehHHHHHHH
Q psy7226 39 SNETIFTEVLVPLINHMFNG-INATLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 39 ~Q~~vf~~~~~plv~~~l~G-~n~~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
.+..++..+ ...++....| ..-.++-||++|+||||.+.+|...++
T Consensus 135 ~~~~~~~~~-~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 135 DRLDALMAA-LDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred HHHHHHHHH-HHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 333444432 4444443332 223588999999999999887766654
No 63
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=87.61 E-value=0.15 Score=39.51 Aligned_cols=30 Identities=30% Similarity=0.297 Sum_probs=19.0
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
..+...+.......++.+|++|+|||+.+.
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 333333333234467889999999996544
No 64
>PF13245 AAA_19: Part of AAA domain
Probab=87.46 E-value=0.19 Score=36.20 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=16.3
Q ss_pred hhhhcccCCCceEeehHHHHHHH
Q psy7226 63 LLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
++.-|+.|||||+|+..++-..+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 33469999999998665554444
No 65
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=87.42 E-value=0.22 Score=45.50 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=24.3
Q ss_pred ehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHH
Q psy7226 44 FTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 44 f~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii 81 (279)
|......++..++.+. ..|+-.|+||||||++|..++
T Consensus 117 ~~~~~~~~L~~~v~~~-~~ilI~G~tGSGKTTll~al~ 153 (299)
T TIGR02782 117 MTAAQRDVLREAVLAR-KNILVVGGTGSGKTTLANALL 153 (299)
T ss_pred CCHHHHHHHHHHHHcC-CeEEEECCCCCCHHHHHHHHH
Confidence 3333455666666643 456677999999998866544
No 66
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=86.79 E-value=0.21 Score=44.46 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=34.7
Q ss_pred eEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHH
Q psy7226 27 VFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 27 ~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
.|.+..+-.....+..++... ..+++.+-.| ..++-||++|+||||.+.+|...++
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~--~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALEDL-ASLVEFFERG--ENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred CcccccccCCcchhHHHHHHH-HHHHHHhccC--CcEEEECCCCCcHHHHHHHHHHHHH
Confidence 344444333444556666665 5555444433 3467789999999998887665554
No 67
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=86.38 E-value=0.29 Score=39.62 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=24.1
Q ss_pred HhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHHHHHHHH
Q psy7226 50 PLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQHVMQR 91 (279)
Q Consensus 50 plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~~lf~~ 91 (279)
.+++.+.+|.+ ++..|+||+|||.... .-++..+.+.
T Consensus 6 ~~~~~i~~~~~--~li~aptGsGKT~~~~---~~~l~~~~~~ 42 (169)
T PF00270_consen 6 EAIEAIISGKN--VLISAPTGSGKTLAYI---LPALNRLQEG 42 (169)
T ss_dssp HHHHHHHTTSE--EEEECSTTSSHHHHHH---HHHHHHHHTT
T ss_pred HHHHHHHcCCC--EEEECCCCCccHHHHH---HHHHhhhccC
Confidence 34555567777 5677999999998844 3344445444
No 68
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=86.09 E-value=0.25 Score=42.77 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=17.1
Q ss_pred hhcccCCCceEeehHHHHHHH
Q psy7226 65 AYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 65 aYG~tgSGKTyTm~Gii~r~l 85 (279)
-+|.||||||+|+.-|+-..+
T Consensus 28 I~G~TGsGKS~~~~~ll~~l~ 48 (229)
T PF01935_consen 28 IFGTTGSGKSNTVKVLLEELL 48 (229)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 458999999999887766665
No 69
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.08 E-value=0.21 Score=46.45 Aligned_cols=32 Identities=31% Similarity=0.577 Sum_probs=23.1
Q ss_pred HhHHhhhcchhhhhhhhcccCCCceEeehHHH
Q psy7226 50 PLINHMFNGINATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 50 plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii 81 (279)
|.+..++.-....|+-.|+||||||+||..++
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~al~ 143 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLASMI 143 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHHHHH
Confidence 45555554445668888999999999986554
No 70
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=85.85 E-value=0.29 Score=46.11 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=21.4
Q ss_pred hHHhhhcchhhhhhhhcccCCCceEeehHHHH
Q psy7226 51 LINHMFNGINATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 51 lv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
+++.++. .++.|+..|+||||||+||..++.
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~al~~ 171 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAASIYQ 171 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHHHHHH
Confidence 4444443 445677889999999999866543
No 71
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=85.72 E-value=0.22 Score=46.61 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=21.0
Q ss_pred hhhcchhhhhhhhcccCCCceEeehHHH
Q psy7226 54 HMFNGINATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 54 ~~l~G~n~~i~aYG~tgSGKTyTm~Gii 81 (279)
.++.-....|+-.|+||||||.||..++
T Consensus 128 ~~~~~~~glilI~GpTGSGKTTtL~aLl 155 (358)
T TIGR02524 128 DAIAPQEGIVFITGATGSGKSTLLAAII 155 (358)
T ss_pred HHHhccCCEEEEECCCCCCHHHHHHHHH
Confidence 3444456788889999999999876554
No 72
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=85.36 E-value=0.18 Score=38.52 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=16.2
Q ss_pred hhhhhcccCCCceEeehHHHH
Q psy7226 62 TLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gii~ 82 (279)
.++-+|++|||||+++..++.
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~ 24 (148)
T smart00382 4 VILIVGPPGSGKTTLARALAR 24 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 467789999999988765543
No 73
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=85.36 E-value=0.22 Score=46.83 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=19.2
Q ss_pred HHhhhc-chhhhhhhhcccCCCceEeeh
Q psy7226 52 INHMFN-GINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 52 v~~~l~-G~n~~i~aYG~tgSGKTyTm~ 78 (279)
+..++. +....++.||.||+|||.|+-
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~~ 60 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATVK 60 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHHH
Confidence 444444 444449999999999998754
No 74
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=85.23 E-value=0.26 Score=43.84 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=19.8
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEeehHHH
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii 81 (279)
..++..++.+. +.|+-.|+||||||.+|.-++
T Consensus 117 ~~~l~~~v~~~-~~ili~G~tGSGKTT~l~all 148 (270)
T PF00437_consen 117 AEFLRSAVRGR-GNILISGPTGSGKTTLLNALL 148 (270)
T ss_dssp HHHHHHCHHTT-EEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhccccc-eEEEEECCCccccchHHHHHh
Confidence 33444433333 445556999999998875443
No 75
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=85.18 E-value=0.32 Score=43.58 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=22.4
Q ss_pred hHHhhhcchhhhhhhhcccCCCceEeehHHHH
Q psy7226 51 LINHMFNGINATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 51 lv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
.+..++..-...|+-.|+||||||.+|..++.
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~all~ 102 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLYSALS 102 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHHHHh
Confidence 34455554455677779999999998765543
No 76
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=85.04 E-value=0.28 Score=47.37 Aligned_cols=52 Identities=29% Similarity=0.327 Sum_probs=31.8
Q ss_pred eEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHH
Q psy7226 27 VFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 27 ~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii 81 (279)
.|+||...... +++..|.. +..+...--..+| .++-||++|+||||.|..+.
T Consensus 111 ~~tFdnFv~g~-~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~Ai~ 162 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLKAAK 162 (450)
T ss_pred ccchhcccCCC-cHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHHHHH
Confidence 48999876443 44445533 3444332111234 47889999999999876553
No 77
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=84.95 E-value=0.35 Score=44.63 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=22.1
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEeehHHHH
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
..++..++.+.. .|+-.|.||||||++|..|+.
T Consensus 134 ~~~L~~~v~~~~-nilI~G~tGSGKTTll~aL~~ 166 (323)
T PRK13833 134 ASVIRSAIDSRL-NIVISGGTGSGKTTLANAVIA 166 (323)
T ss_pred HHHHHHHHHcCC-eEEEECCCCCCHHHHHHHHHH
Confidence 455555555332 366779999999988765443
No 78
>PF12846 AAA_10: AAA-like domain
Probab=84.69 E-value=0.27 Score=43.67 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=15.8
Q ss_pred hhhhhcccCCCceEeehHHH
Q psy7226 62 TLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gii 81 (279)
-++..|.||||||++|..++
T Consensus 3 h~~i~G~tGsGKT~~~~~l~ 22 (304)
T PF12846_consen 3 HTLILGKTGSGKTTLLKNLL 22 (304)
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 45677999999998877444
No 79
>KOG0729|consensus
Probab=84.11 E-value=0.68 Score=41.69 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=26.4
Q ss_pred hhhhhcccCCCceEeeh-----------------------HHHHHHHHHHHHHcCc
Q psy7226 62 TLLAYGQTGGGKTYTVS-----------------------AMIMKTLQHVMQRCNK 94 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~-----------------------Gii~r~l~~lf~~~~~ 94 (279)
-|+.||+.|+|||...- |-=.|.+++||+....
T Consensus 213 gvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mart 268 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMART 268 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcc
Confidence 47999999999997642 5566889999988755
No 80
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=83.84 E-value=0.17 Score=39.29 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=13.3
Q ss_pred hhhhhhhcccCCCceEeehH
Q psy7226 60 NATLLAYGQTGGGKTYTVSA 79 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~G 79 (279)
..+++.+|++|+|||.++.-
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHH
Confidence 34678899999999976543
No 81
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=83.55 E-value=0.36 Score=44.76 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=20.2
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEeehHH
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gi 80 (279)
..++..++.+.- .|+..|+||||||.+|..+
T Consensus 150 ~~~L~~~v~~~~-nili~G~tgSGKTTll~aL 180 (332)
T PRK13900 150 KEFLEHAVISKK-NIIISGGTSTGKTTFTNAA 180 (332)
T ss_pred HHHHHHHHHcCC-cEEEECCCCCCHHHHHHHH
Confidence 345555554433 3566699999999876544
No 82
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=83.53 E-value=0.35 Score=46.67 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=34.3
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhh--hcc--hhhhhhhhcccCCCceEeehHHHHHH
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHM--FNG--INATLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~--l~G--~n~~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
+..|+||..... .++...|.. +..+.+.. ..| +| .++-||++|+||||.+..+....
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~-a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~Ai~~~l 165 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRI-LQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQAAVHAL 165 (445)
T ss_pred CccccccceeeC-CcHHHHHHH-HHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHHHHHHHH
Confidence 456888887643 344444433 24443322 123 34 36789999999999887665544
No 83
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=83.51 E-value=0.37 Score=44.39 Aligned_cols=34 Identities=32% Similarity=0.339 Sum_probs=22.6
Q ss_pred hHHhHHhhhcchhhhhhhhcccCCCceEeehHHHH
Q psy7226 48 LVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 48 ~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
...++..++.+. ..|+-.|.||||||++|..|+.
T Consensus 137 ~~~~L~~~v~~~-~~ilI~G~tGSGKTTll~aL~~ 170 (319)
T PRK13894 137 QREAIIAAVRAH-RNILVIGGTGSGKTTLVNAIIN 170 (319)
T ss_pred HHHHHHHHHHcC-CeEEEECCCCCCHHHHHHHHHH
Confidence 345666666654 3455569999999977655543
No 84
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=83.36 E-value=0.28 Score=41.79 Aligned_cols=20 Identities=45% Similarity=0.677 Sum_probs=15.7
Q ss_pred hhhhhhcccCCCceEeehHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gi 80 (279)
+.|+-.|+||||||+++.-+
T Consensus 2 GlilI~GptGSGKTTll~~l 21 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAM 21 (198)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35667799999999887654
No 85
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=83.13 E-value=0.28 Score=46.65 Aligned_cols=51 Identities=25% Similarity=0.376 Sum_probs=29.6
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
+..|+||.... +.++.-.|... . .+...-.+.---+|-||++|+||||-|.
T Consensus 81 ~~~ytFdnFv~-g~~N~~A~aa~-~-~va~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVV-GPSNRLAYAAA-K-AVAENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheee-CCchHHHHHHH-H-HHHhccCCcCCcEEEECCCCCCHHHHHH
Confidence 45688998664 33333333222 1 1111112223357889999999999886
No 86
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=82.96 E-value=0.33 Score=41.24 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=16.6
Q ss_pred hhhhhcccCCCceEeehHHHHHH
Q psy7226 62 TLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
-++.+|.||||||.++..++...
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l 62 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSL 62 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHHHHHH
Confidence 56888999999999887665544
No 87
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=82.94 E-value=0.43 Score=36.37 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=18.5
Q ss_pred hhhhcccCCCceEeehHHHHHHHHHH
Q psy7226 63 LLAYGQTGGGKTYTVSAMIMKTLQHV 88 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~r~l~~l 88 (279)
|+-||++|.|||+.+.-|+...++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46799999999987665554444444
No 88
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=82.57 E-value=0.44 Score=40.42 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=21.1
Q ss_pred hHHhhhcchhhhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 51 LINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 51 lv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
.|..++.... ..+..|+.|||||+|+..++..++.
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~~~i~~~~~ 43 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLASIIAQLLQ 43 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHHHHHHHH--
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHHHHHHHhcc
Confidence 3444454333 3445699999999998877776644
No 89
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=82.47 E-value=0.34 Score=40.74 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=20.6
Q ss_pred hhHHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 47 VLVPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 47 ~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
-..+++..++... ..++-.|++|||||.+|.
T Consensus 13 ~~~~~l~~~v~~g-~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 13 LQAAYLWLAVEAR-KNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHHHhCC-CEEEEECCCCCCHHHHHH
Confidence 3466666666542 234556999999997754
No 90
>KOG2543|consensus
Probab=82.38 E-value=0.41 Score=44.93 Aligned_cols=15 Identities=53% Similarity=0.975 Sum_probs=13.1
Q ss_pred hhhhcccCCCceEee
Q psy7226 63 LLAYGQTGGGKTYTV 77 (279)
Q Consensus 63 i~aYG~tgSGKTyTm 77 (279)
|+-||.+||||||++
T Consensus 33 ~~iyG~sgTGKT~~~ 47 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLV 47 (438)
T ss_pred EEEeccCCCchhHHH
Confidence 478999999999874
No 91
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=82.31 E-value=0.5 Score=40.20 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=20.8
Q ss_pred HhHHhhhcchhhhhhhhcccCCCceEeehHH
Q psy7226 50 PLINHMFNGINATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 50 plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gi 80 (279)
..+..++...+-.++..|+.||||||+|..+
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~ 38 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKAL 38 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHH
Confidence 4555666544444455699999999986544
No 92
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=82.23 E-value=0.4 Score=44.64 Aligned_cols=33 Identities=33% Similarity=0.480 Sum_probs=21.1
Q ss_pred hHHhHHhhhcchhhhhhhhcccCCCceEeehHHH
Q psy7226 48 LVPLINHMFNGINATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 48 ~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii 81 (279)
...++..++.+. ..|+..|+||||||++|..++
T Consensus 151 ~~~~l~~~v~~~-~nilI~G~tGSGKTTll~aLl 183 (344)
T PRK13851 151 LEAFLHACVVGR-LTMLLCGPTGSGKTTMSKTLI 183 (344)
T ss_pred HHHHHHHHHHcC-CeEEEECCCCccHHHHHHHHH
Confidence 345555555432 235666999999998866443
No 93
>PRK06921 hypothetical protein; Provisional
Probab=81.91 E-value=0.4 Score=43.00 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=20.9
Q ss_pred hhhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 60 NATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
.-.++-||++|+||||.+..|...+++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 345788999999999998877655443
No 94
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=81.37 E-value=0.97 Score=28.82 Aligned_cols=19 Identities=47% Similarity=0.707 Sum_probs=12.7
Q ss_pred HHhhccchhhhhHHHHhhh
Q psy7226 258 EKKKGKKKKEKEEEEKEEN 276 (279)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~ 276 (279)
.+.++|||+.||.|++|.+
T Consensus 30 kqIrgKkk~KKeie~ke~~ 48 (49)
T PF11044_consen 30 KQIRGKKKEKKEIERKEDK 48 (49)
T ss_pred HHHHhhhhhHHHHHHHhhc
Confidence 4556777777777777654
No 95
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.34 E-value=0.61 Score=43.49 Aligned_cols=54 Identities=28% Similarity=0.479 Sum_probs=36.0
Q ss_pred cceehhhhHHhHH-hhhc--chh--hhhhhhcccCCCceEeeh-----------------------HHHHHHHHHHHHHc
Q psy7226 41 ETIFTEVLVPLIN-HMFN--GIN--ATLLAYGQTGGGKTYTVS-----------------------AMIMKTLQHVMQRC 92 (279)
Q Consensus 41 ~~vf~~~~~plv~-~~l~--G~n--~~i~aYG~tgSGKTyTm~-----------------------Gii~r~l~~lf~~~ 92 (279)
+++.+.+--||.. ..|. |.. --|+.||+.|+|||-..- |==+|.++++|...
T Consensus 161 ~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lA 240 (406)
T COG1222 161 QEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELA 240 (406)
T ss_pred HHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHH
Confidence 3444455455553 2343 433 347999999999986431 56679999999887
Q ss_pred Cc
Q psy7226 93 NK 94 (279)
Q Consensus 93 ~~ 94 (279)
.+
T Consensus 241 re 242 (406)
T COG1222 241 RE 242 (406)
T ss_pred hh
Confidence 76
No 96
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=80.76 E-value=0.71 Score=37.91 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=19.7
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHHHH
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQH 87 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~~ 87 (279)
..+++....+....++-+|.+|+|||+.+.-++.+....
T Consensus 13 ~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 13 RDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp HHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 334443335666778999999999998765444444333
No 97
>PRK09183 transposase/IS protein; Provisional
Probab=80.16 E-value=0.75 Score=41.00 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=19.1
Q ss_pred cchhhhhhhhcccCCCceEeehHHHHHH
Q psy7226 57 NGINATLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 57 ~G~n~~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
.|.| ++-+|++|+||||.+..|...+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHHHHHHH
Confidence 3544 5678999999999988764433
No 98
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=79.57 E-value=0.41 Score=40.66 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=20.4
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
..+...+-.|.+.+++-||+.|+|||+.|.
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 444444445667889999999999997543
No 99
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=79.29 E-value=0.32 Score=37.54 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=12.2
Q ss_pred hhhhcccCCCceEee
Q psy7226 63 LLAYGQTGGGKTYTV 77 (279)
Q Consensus 63 i~aYG~tgSGKTyTm 77 (279)
|+-||+.|+|||+.+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 467899999999653
No 100
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=79.05 E-value=0.57 Score=41.29 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=15.1
Q ss_pred hhhhhhhcccCCCceEeeh
Q psy7226 60 NATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~ 78 (279)
...++-+|++|+|||+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 4467789999999997654
No 101
>PF13479 AAA_24: AAA domain
Probab=78.31 E-value=0.39 Score=41.41 Aligned_cols=18 Identities=39% Similarity=0.684 Sum_probs=15.2
Q ss_pred hhhhhhcccCCCceEeeh
Q psy7226 61 ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~ 78 (279)
..++.||++|+|||+++.
T Consensus 4 ~~~lIyG~~G~GKTt~a~ 21 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAA 21 (213)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999998765
No 102
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=77.83 E-value=0.91 Score=36.89 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=20.9
Q ss_pred hHHhhhcchhhhhhhhcccCCCceEeehHHHHHHH
Q psy7226 51 LINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 51 lv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
++..+.++. ..++..|++|||||.++...+.+.+
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHHHHHHHHHh
Confidence 344444442 2345568999999998765544443
No 103
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=77.81 E-value=0.52 Score=41.78 Aligned_cols=50 Identities=24% Similarity=0.447 Sum_probs=31.8
Q ss_pred Hhhhcchhhh-hhhhcccCCCceEeehHHHHHHHHHHHHHcCccchhhhHHHHhhhhhhhh
Q psy7226 53 NHMFNGINAT-LLAYGQTGGGKTYTVSAMIMKTLQHVMQRCNKDDVYMSYLQLYSEKCYDL 112 (279)
Q Consensus 53 ~~~l~G~n~~-i~aYG~tgSGKTyTm~Gii~r~l~~lf~~~~~~~v~vS~~EIy~E~v~DL 112 (279)
..++.|..+- ++.||..|+|||.++-.++......= +..+||..+.+.||
T Consensus 44 ~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----------LRlIev~k~~L~~l 94 (249)
T PF05673_consen 44 EQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG----------LRLIEVSKEDLGDL 94 (249)
T ss_pred HHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----------ceEEEECHHHhccH
Confidence 4567776654 67799999999987666655443322 44566666554433
No 104
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=77.78 E-value=0.71 Score=41.68 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=18.3
Q ss_pred hhhhhcccCCCceEeehHHHHHHH
Q psy7226 62 TLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
.|+-.|++|+|||+|+..|.....
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 455569999999999887765543
No 105
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=77.70 E-value=0.96 Score=46.68 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=34.3
Q ss_pred HhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHHHHHHHHc-Cc-----cchhhhHHHHhh
Q psy7226 50 PLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQHVMQRC-NK-----DDVYMSYLQLYS 106 (279)
Q Consensus 50 plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~~lf~~~-~~-----~~v~vS~~EIy~ 106 (279)
..+..+.+|.|+.|+| |||||||-+.+ +| ++..|+..- .. +.+++|=+-=-|
T Consensus 29 ~a~~~i~~G~nvLiiA--PTGsGKTeAAf--Lp-il~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 29 YAIPEIHSGENVLIIA--PTGSGKTEAAF--LP-VINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred HHHHHHhCCCceEEEc--CCCCChHHHHH--HH-HHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 3456678999999888 99999997743 33 445555552 11 567777766543
No 106
>KOG0989|consensus
Probab=77.68 E-value=0.79 Score=41.92 Aligned_cols=37 Identities=30% Similarity=0.313 Sum_probs=23.8
Q ss_pred cceehhhhHHhHHhhhcchhh-hhhhhcccCCCceEee
Q psy7226 41 ETIFTEVLVPLINHMFNGINA-TLLAYGQTGGGKTYTV 77 (279)
Q Consensus 41 ~~vf~~~~~plv~~~l~G~n~-~i~aYG~tgSGKTyTm 77 (279)
+-++++.+-.++...+.+.+. -.+-||+.|+|||.|.
T Consensus 37 e~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred hhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 344555555555555544443 3568999999999884
No 107
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=77.12 E-value=1.1 Score=48.15 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=23.7
Q ss_pred HhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 50 PLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 50 plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
.+++.+-+|....++ .-+||||||+||.+++.+.+.
T Consensus 424 ai~~a~~~g~r~~Ll-~maTGSGKT~tai~li~~L~~ 459 (1123)
T PRK11448 424 AVEKAIVEGQREILL-AMATGTGKTRTAIALMYRLLK 459 (1123)
T ss_pred HHHHHHHhccCCeEE-EeCCCCCHHHHHHHHHHHHHh
Confidence 334444456554444 478999999999887766543
No 108
>KOG1803|consensus
Probab=77.03 E-value=1.5 Score=43.42 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=20.5
Q ss_pred hHHhhhcchhhhhhhhcccCCCceEeehHHHHHH
Q psy7226 51 LINHMFNGINATLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 51 lv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
.+.-+++-. ...+-.||.|+|||+|+--||.++
T Consensus 193 Av~~~~~~k-~l~~I~GPPGTGKT~TlvEiI~ql 225 (649)
T KOG1803|consen 193 AVSFAINNK-DLLIIHGPPGTGKTRTLVEIISQL 225 (649)
T ss_pred HHHHHhccC-CceEeeCCCCCCceeeHHHHHHHH
Confidence 333334443 334556999999999987444443
No 109
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=77.03 E-value=0.74 Score=39.31 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=16.6
Q ss_pred hhhhcccCCCceEeehHHHHHH
Q psy7226 63 LLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
|+-.|+||+|||.|+.-|..+.
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHH
Confidence 4567999999999977554443
No 110
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=76.24 E-value=0.82 Score=40.81 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=18.4
Q ss_pred hhhhhhhhcccCCCceEeehHHHHHHHHHHHHH
Q psy7226 59 INATLLAYGQTGGGKTYTVSAMIMKTLQHVMQR 91 (279)
Q Consensus 59 ~n~~i~aYG~tgSGKTyTm~Gii~r~l~~lf~~ 91 (279)
.+..++..|..|||||+||. .|++.-|...
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~---~ri~~ll~~~ 41 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLL---ERIAYLLYEG 41 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHH---HHHHHHHHTS
T ss_pred CCCCEEEEeCCCCCchHHHH---HHHHHhhccc
Confidence 45566667889999999954 4444444433
No 111
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=76.06 E-value=0.44 Score=45.09 Aligned_cols=18 Identities=39% Similarity=0.632 Sum_probs=14.6
Q ss_pred hhhhhhcccCCCceEeeh
Q psy7226 61 ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~ 78 (279)
..|+-||++|+|||+...
T Consensus 166 ~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CceEEECCCCCChHHHHH
Confidence 458889999999996643
No 112
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=76.05 E-value=1.4 Score=39.67 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=26.2
Q ss_pred hhhhhcccCCCceEeeh-----------------------HHHHHHHHHHHHHcCc
Q psy7226 62 TLLAYGQTGGGKTYTVS-----------------------AMIMKTLQHVMQRCNK 94 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~-----------------------Gii~r~l~~lf~~~~~ 94 (279)
.|+-||++|+|||.+.- |=-.+-+++||++..+
T Consensus 153 nVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~ 208 (368)
T COG1223 153 NVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARK 208 (368)
T ss_pred eeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 46889999999998742 5566888889988766
No 113
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=75.79 E-value=0.8 Score=41.76 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=17.6
Q ss_pred cchhhhhhhhcccCCCceEeehHH
Q psy7226 57 NGINATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 57 ~G~n~~i~aYG~tgSGKTyTm~Gi 80 (279)
.|....++-||++|+|||+++..+
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la~~~ 56 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAVRAL 56 (337)
T ss_pred CCCCceEEEECCCCCCHHHHHHHH
Confidence 344335788999999999876544
No 114
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=75.31 E-value=0.72 Score=42.78 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=21.8
Q ss_pred hHHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 48 LVPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 48 ~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
...++..+..++ +.|+-.|.||||||+++.
T Consensus 162 ~a~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 162 AAKFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 345555566665 567778999999998764
No 115
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=75.27 E-value=0.58 Score=35.84 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=11.8
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
|+-.|++|||||+.
T Consensus 2 I~I~G~~gsGKST~ 15 (121)
T PF13207_consen 2 IIISGPPGSGKSTL 15 (121)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999965
No 116
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=75.25 E-value=0.63 Score=36.70 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=12.8
Q ss_pred hhhhcccCCCceEeeh
Q psy7226 63 LLAYGQTGGGKTYTVS 78 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~ 78 (279)
|+.+|++|||||+...
T Consensus 2 ii~~G~pgsGKSt~a~ 17 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAK 17 (143)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5678999999997543
No 117
>PRK13764 ATPase; Provisional
Probab=74.54 E-value=1 Score=45.08 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=18.6
Q ss_pred hhhhhhcccCCCceEeehHHHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
..|+..|+||||||+++..++...
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i 281 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFY 281 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 347888999999999987665433
No 118
>PHA00729 NTP-binding motif containing protein
Probab=73.93 E-value=1.3 Score=38.71 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=25.2
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHH
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
..++..+..|--..|+.+|.+|+||||....|.-++.
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445554443334688999999999988777666544
No 119
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=73.39 E-value=0.81 Score=41.55 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=28.6
Q ss_pred eeecccCCCCCCcceehhhhHHhHHhhh-cchh-hhhhhhcccCCCceEeehHH
Q psy7226 29 IFDNIFGPNDSNETIFTEVLVPLINHMF-NGIN-ATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 29 ~FD~Vf~~~a~Q~~vf~~~~~plv~~~l-~G~n-~~i~aYG~tgSGKTyTm~Gi 80 (279)
.++.-|-|..-.+-+.++.+...+..++ .|.- ..++-||++|+|||+.+..+
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l 63 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKAL 63 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHH
Confidence 3444444433333334444333443433 4442 35566899999999886654
No 120
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=72.70 E-value=0.83 Score=47.62 Aligned_cols=32 Identities=34% Similarity=0.452 Sum_probs=21.8
Q ss_pred HhHHhhhc--chhhhhhhhcccCCCceEeehHHH
Q psy7226 50 PLINHMFN--GINATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 50 plv~~~l~--G~n~~i~aYG~tgSGKTyTm~Gii 81 (279)
..|..++. |-+.+++-||++|+|||.|+--++
T Consensus 769 sfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 769 GFLESGIKQSGSNQILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred HHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 34444443 344567799999999998876554
No 121
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=72.64 E-value=1.2 Score=42.49 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=17.7
Q ss_pred hhhhhhcccCCCceEeehHHHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
--++.+|+||||||..+..++..+
T Consensus 43 ~h~~i~g~tGsGKt~~i~~l~~~~ 66 (410)
T cd01127 43 AHTMIIGTTGTGKTTQIRELLASI 66 (410)
T ss_pred ccEEEEcCCCCCHHHHHHHHHHHH
Confidence 356788999999998765555543
No 122
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=72.14 E-value=1.2 Score=40.71 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=18.8
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
.+++..++.+.- .++-.|++|||||..|.
T Consensus 134 ~~~l~~~v~~~~-~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 134 KEFLRLAIASRK-NIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHhhCCC-EEEEECCCCCCHHHHHH
Confidence 445555555443 34455999999997654
No 123
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=71.85 E-value=1.2 Score=38.45 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=13.8
Q ss_pred hhhhhhhhcccCCCceEeeh
Q psy7226 59 INATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 59 ~n~~i~aYG~tgSGKTyTm~ 78 (279)
.+-.+++.|+.|||||+...
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHH
T ss_pred hCCeEEEECCCCCcHHHHHH
Confidence 55578899999999998743
No 124
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=71.82 E-value=1.7 Score=39.88 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=21.8
Q ss_pred cchhhhhhhhcccCCCceEeehHHHHHH
Q psy7226 57 NGINATLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 57 ~G~n~~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
...+.-++-||+.|||||.+|.-++..+
T Consensus 20 ~~~~~r~vL~G~~GsGKS~~L~q~~~~A 47 (309)
T PF10236_consen 20 SSKNNRYVLTGERGSGKSVLLAQAVHYA 47 (309)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4666778899999999999987554443
No 125
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=71.79 E-value=1.8 Score=36.27 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=18.7
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEe
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
...++.++.|.| ++..++||+|||.+
T Consensus 27 ~~~~~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 27 ARAIPPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHHHHHhcCCc--EEEECCCCCcHHHH
Confidence 344555566877 46668999999977
No 126
>KOG0735|consensus
Probab=70.33 E-value=1.5 Score=44.53 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=16.2
Q ss_pred hhhhhhhhcccCCCceEeeh
Q psy7226 59 INATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 59 ~n~~i~aYG~tgSGKTyTm~ 78 (279)
...-|+.||+.|+||||...
T Consensus 700 ~~~giLLyGppGcGKT~la~ 719 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLAS 719 (952)
T ss_pred cccceEEECCCCCcHHHHHH
Confidence 34568999999999998654
No 127
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=70.09 E-value=1.1 Score=40.95 Aligned_cols=15 Identities=40% Similarity=0.789 Sum_probs=12.8
Q ss_pred hhhcccCCCceEeeh
Q psy7226 64 LAYGQTGGGKTYTVS 78 (279)
Q Consensus 64 ~aYG~tgSGKTyTm~ 78 (279)
..||+|||||++.+-
T Consensus 91 ~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 91 VVYGPTGSGKSQLLR 105 (369)
T ss_pred EEECCCCCCHHHHHH
Confidence 579999999998754
No 128
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=70.07 E-value=0.68 Score=43.34 Aligned_cols=38 Identities=24% Similarity=0.545 Sum_probs=26.3
Q ss_pred CCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 37 NDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 37 ~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
+..|..+|+.++..+.. .+| ..+|.-|+.|+||||.+-
T Consensus 3 n~eQ~~~~~~v~~~~~~--~~~--~~~fv~G~~GtGKs~l~~ 40 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN--EEG--LNFFVTGPAGTGKSFLIK 40 (364)
T ss_pred CHHHHHHHHHHHHHHHc--cCC--cEEEEEcCCCCChhHHHH
Confidence 34577888887554432 334 455778999999999863
No 129
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=69.49 E-value=1.3 Score=43.67 Aligned_cols=31 Identities=39% Similarity=0.582 Sum_probs=22.3
Q ss_pred hHHhHHhhhcchh--hhhhhhcccCCCceEeeh
Q psy7226 48 LVPLINHMFNGIN--ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 48 ~~plv~~~l~G~n--~~i~aYG~tgSGKTyTm~ 78 (279)
++..++..+.|.. -.++.+||+|+|||.|+.
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~ 63 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVK 63 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHHH
Confidence 4666666665543 356789999999998854
No 130
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=69.37 E-value=1.3 Score=41.88 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=18.3
Q ss_pred hhhhhhhcccCCCceEeehHHHH
Q psy7226 60 NATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
...|+.+|+||+|||.|+.-+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35678899999999999775543
No 131
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=69.23 E-value=0.83 Score=36.06 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=12.3
Q ss_pred hhhhcccCCCceEee
Q psy7226 63 LLAYGQTGGGKTYTV 77 (279)
Q Consensus 63 i~aYG~tgSGKTyTm 77 (279)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999653
No 132
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=69.20 E-value=2.1 Score=43.32 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=15.9
Q ss_pred hhhhcccCCCceEeehHHHH
Q psy7226 63 LLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~ 82 (279)
++-.|+.|||||+|+..++.
T Consensus 176 ~lI~GpPGTGKT~t~~~ii~ 195 (637)
T TIGR00376 176 FLIHGPPGTGKTRTLVELIR 195 (637)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999875443
No 133
>KOG0741|consensus
Probab=69.16 E-value=2.9 Score=41.13 Aligned_cols=48 Identities=23% Similarity=0.461 Sum_probs=34.9
Q ss_pred hhhhhcccCCCceEeehHHHHHHHHHHHHHcCc-----cchhhhHHHHhhhhhhhhcC
Q psy7226 62 TLLAYGQTGGGKTYTVSAMIMKTLQHVMQRCNK-----DDVYMSYLQLYSEKCYDLLN 114 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gii~r~l~~lf~~~~~-----~~v~vS~~EIy~E~v~DLL~ 114 (279)
-|+.||+.|+||| +|.|-+-.+...... -.|-=-|+.=..+.|++|++
T Consensus 258 GiLLyGPPGTGKT-----LiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFa 310 (744)
T KOG0741|consen 258 GILLYGPPGTGKT-----LIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFA 310 (744)
T ss_pred eEEEECCCCCChh-----HHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHH
Confidence 3789999999999 777777777665544 23444555556788999986
No 134
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=68.97 E-value=1.5 Score=41.28 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=19.5
Q ss_pred hhhhhhhcccCCCceEeehHHHHHH
Q psy7226 60 NATLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
...++-.|+||+|||+|+.-|..+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456678999999999988776654
No 135
>KOG0953|consensus
Probab=68.94 E-value=1.6 Score=42.86 Aligned_cols=47 Identities=28% Similarity=0.457 Sum_probs=30.5
Q ss_pred hhhhcccCCCceEeehHHHHHHHHHHHHHcCc---cchhhhHHHHhhhh-----hhhhcCCC
Q psy7226 63 LLAYGQTGGGKTYTVSAMIMKTLQHVMQRCNK---DDVYMSYLQLYSEK-----CYDLLNGN 116 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~r~l~~lf~~~~~---~~v~vS~~EIy~E~-----v~DLL~~~ 116 (279)
||..|+|.||||| ++++.++..... ..+++-..|||+.. --||+.+.
T Consensus 194 i~H~GPTNSGKTy-------~ALqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGe 248 (700)
T KOG0953|consen 194 IMHVGPTNSGKTY-------RALQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGE 248 (700)
T ss_pred EEEeCCCCCchhH-------HHHHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccc
Confidence 7889999999998 466666654433 34556666776432 25666543
No 136
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=68.81 E-value=0.76 Score=38.34 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=12.6
Q ss_pred hhhhhcccCCCceEe
Q psy7226 62 TLLAYGQTGGGKTYT 76 (279)
Q Consensus 62 ~i~aYG~tgSGKTyT 76 (279)
.++-+|+||+|||++
T Consensus 5 ~~ll~GpsGvGKT~l 19 (171)
T PF07724_consen 5 NFLLAGPSGVGKTEL 19 (171)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999974
No 137
>KOG0727|consensus
Probab=68.50 E-value=1.2 Score=39.83 Aligned_cols=60 Identities=25% Similarity=0.397 Sum_probs=37.1
Q ss_pred CCCCCCcceehhhhHHhHHhhh-c--chh--hhhhhhcccCCCceEeeh-----------------------HHHHHHHH
Q psy7226 35 GPNDSNETIFTEVLVPLINHMF-N--GIN--ATLLAYGQTGGGKTYTVS-----------------------AMIMKTLQ 86 (279)
Q Consensus 35 ~~~a~Q~~vf~~~~~plv~~~l-~--G~n--~~i~aYG~tgSGKTyTm~-----------------------Gii~r~l~ 86 (279)
+-+..-++|-+.+--||...-+ . |.. -.++.||+.|+|||-..- |-=||.++
T Consensus 159 gld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvr 238 (408)
T KOG0727|consen 159 GLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVR 238 (408)
T ss_pred cchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHH
Confidence 3333344555555556554322 1 322 347899999999984321 66688888
Q ss_pred HHHHHcCc
Q psy7226 87 HVMQRCNK 94 (279)
Q Consensus 87 ~lf~~~~~ 94 (279)
++|....+
T Consensus 239 dvfrlake 246 (408)
T KOG0727|consen 239 DVFRLAKE 246 (408)
T ss_pred HHHHHHhc
Confidence 88887765
No 138
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=68.36 E-value=2.4 Score=43.10 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=24.1
Q ss_pred hHHhHHhhhc-----chhhhhhhhcccCCCceEeehHHHHHHH
Q psy7226 48 LVPLINHMFN-----GINATLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 48 ~~plv~~~l~-----G~n~~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
+..+++.+.. |.+..++. -+||||||+||..++-+.+
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~~la~~l~ 288 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTMLFAARKAL 288 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHHHHHHHHH
Confidence 4556666655 33444443 3899999999987765544
No 139
>PRK06547 hypothetical protein; Provisional
Probab=68.25 E-value=1.7 Score=36.33 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=18.1
Q ss_pred HhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 50 PLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 50 plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
..+..+..+.---|.-+|.+|||||+...
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~ 33 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAG 33 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHH
Confidence 33444444444445566999999996543
No 140
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=67.93 E-value=2.6 Score=39.88 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=38.4
Q ss_pred eeEeeecccCCCCCCcceehhhhHHhHHhhhc--c--hhhhhhhhcccCCCceEeehHHHHHHHHHHHHHcCccchhhhH
Q psy7226 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFN--G--INATLLAYGQTGGGKTYTVSAMIMKTLQHVMQRCNKDDVYMSY 101 (279)
Q Consensus 26 ~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~--G--~n~~i~aYG~tgSGKTyTm~Gii~r~l~~lf~~~~~~~v~vS~ 101 (279)
+++.||.+.+.-.--..+.+.++..+....+. | .---++-||+.|+|||+. ++.++..+....+.+|.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll--------AraiA~elg~~~i~vsa 181 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ--------CELVFKKMGIEPIVMSA 181 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH--------HHHHHHHcCCCeEEEEH
Confidence 44566666544433333444444444444442 1 122356799999999954 34445555544455555
Q ss_pred HHHh
Q psy7226 102 LQLY 105 (279)
Q Consensus 102 ~EIy 105 (279)
=||.
T Consensus 182 ~eL~ 185 (413)
T PLN00020 182 GELE 185 (413)
T ss_pred HHhh
Confidence 5554
No 141
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=67.70 E-value=1.2 Score=34.13 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=13.0
Q ss_pred hhhhcccCCCceEeehHH
Q psy7226 63 LLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gi 80 (279)
|+-.|.+|||||+...-|
T Consensus 1 I~i~G~~GsGKtTia~~L 18 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKEL 18 (129)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHH
Confidence 455799999999654433
No 142
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=67.64 E-value=1 Score=45.26 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=28.3
Q ss_pred EeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 28 f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
-.||.+++. .... ..++..+..++...++-||++|+|||+.+.
T Consensus 151 ~~~~~iiGq----s~~~----~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr 193 (615)
T TIGR02903 151 RAFSEIVGQ----ERAI----KALLAKVASPFPQHIILYGPPGVGKTTAAR 193 (615)
T ss_pred CcHHhceeC----cHHH----HHHHHHHhcCCCCeEEEECCCCCCHHHHHH
Confidence 456666643 3333 334555556777778889999999996644
No 143
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.51 E-value=2.6 Score=38.95 Aligned_cols=16 Identities=44% Similarity=0.696 Sum_probs=13.4
Q ss_pred hhhhhhcccCCCceEe
Q psy7226 61 ATLLAYGQTGGGKTYT 76 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyT 76 (279)
+-|+..|+||||||+.
T Consensus 98 SNILLiGPTGsGKTlL 113 (408)
T COG1219 98 SNILLIGPTGSGKTLL 113 (408)
T ss_pred ccEEEECCCCCcHHHH
Confidence 4578889999999964
No 144
>PF05729 NACHT: NACHT domain
Probab=67.24 E-value=1.6 Score=34.80 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=17.9
Q ss_pred hhhhcccCCCceEeehHHHHHHHHH
Q psy7226 63 LLAYGQTGGGKTYTVSAMIMKTLQH 87 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~r~l~~ 87 (279)
++-+|..|+|||..|..++......
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhc
Confidence 4568999999998776555544433
No 145
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=67.08 E-value=1.7 Score=41.03 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=24.2
Q ss_pred hhhhhcccCCCceEeehHHHHHHHHHHHHHcCc---cchhhhHHHHh
Q psy7226 62 TLLAYGQTGGGKTYTVSAMIMKTLQHVMQRCNK---DDVYMSYLQLY 105 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gii~r~l~~lf~~~~~---~~v~vS~~EIy 105 (279)
-++..|.||||||.+|..++..+... -.. +.....|++-|
T Consensus 17 ~~li~G~~GsGKT~~i~~ll~~~~~~----g~~~iI~D~kg~~~~~f 59 (386)
T PF10412_consen 17 HILIIGATGSGKTQAIRHLLDQIRAR----GDRAIIYDPKGEFTERF 59 (386)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHT----T-EEEEEEETTHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHc----CCEEEEEECCchHHHHh
Confidence 35677999999997666655554333 222 55667777653
No 146
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=66.97 E-value=1.8 Score=34.23 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=16.0
Q ss_pred hhhhcccCCCceEeehHHHHHH
Q psy7226 63 LLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
++-+|++|+|||+.+..++-..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 3568999999998766554443
No 147
>PLN03025 replication factor C subunit; Provisional
Probab=66.63 E-value=2.6 Score=38.55 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=16.9
Q ss_pred hhhhhhcccCCCceEeehHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
..++-||+.|+|||+++..+.-
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~ 56 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAH 56 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3466799999999988766543
No 148
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=66.02 E-value=2.3 Score=41.10 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=21.7
Q ss_pred hhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 45 TEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 45 ~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
+..+..++..+..|.|. +-||++|+|||+...
T Consensus 181 e~~le~l~~~L~~~~~i--il~GppGtGKT~lA~ 212 (459)
T PRK11331 181 ETTIETILKRLTIKKNI--ILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHHHHHHhcCCCE--EEECCCCCCHHHHHH
Confidence 33455566666666654 449999999997644
No 149
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=65.78 E-value=4.8 Score=41.47 Aligned_cols=38 Identities=34% Similarity=0.461 Sum_probs=28.6
Q ss_pred hHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 48 LVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 48 ~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
+..+++.+-+|.+-.+++. .||+|||+|.+-||.|.++
T Consensus 174 I~rv~Eaf~~g~~raLlvM-ATGTGKTrTAiaii~rL~r 211 (875)
T COG4096 174 IRRVIEAFSKGQNRALLVM-ATGTGKTRTAIAIIDRLIK 211 (875)
T ss_pred HHHHHHHHhcCCceEEEEE-ecCCCcceeHHHHHHHHHh
Confidence 5667777888988865543 5999999998876666554
No 150
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=65.73 E-value=2.4 Score=40.76 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=18.8
Q ss_pred HhHHhhhcchhhhhhhhcccCCCceEe
Q psy7226 50 PLINHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 50 plv~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
..+..+++|.| ++..++||||||.+
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHH
Confidence 34556678887 56678999999965
No 151
>KOG2373|consensus
Probab=65.66 E-value=3.7 Score=38.43 Aligned_cols=28 Identities=43% Similarity=0.711 Sum_probs=19.3
Q ss_pred HhHHhhhcchh---hhhhhhcccCCCceEeeh
Q psy7226 50 PLINHMFNGIN---ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 50 plv~~~l~G~n---~~i~aYG~tgSGKTyTm~ 78 (279)
|.+...+.|.- -+|++ |+||||||.-|.
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEeh
Confidence 44455555443 45666 999999999886
No 152
>PRK04296 thymidine kinase; Provisional
Probab=64.75 E-value=1.9 Score=36.38 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=19.3
Q ss_pred hhhhcccCCCceEeehHHHHHHHH
Q psy7226 63 LLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
++-+|+.|+|||..+.+++.+...
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~ 28 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE 28 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH
Confidence 466899999999888888777654
No 153
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=64.68 E-value=1.4 Score=39.12 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=15.5
Q ss_pred hhhhhhcccCCCceEeehHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gi 80 (279)
..++-||++|+|||++...+
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 34677999999999775544
No 154
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=64.61 E-value=1.3 Score=30.59 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=11.0
Q ss_pred hhhcccCCCceEee
Q psy7226 64 LAYGQTGGGKTYTV 77 (279)
Q Consensus 64 ~aYG~tgSGKTyTm 77 (279)
+-.|++|||||..|
T Consensus 27 li~G~nGsGKSTll 40 (62)
T PF13555_consen 27 LITGPNGSGKSTLL 40 (62)
T ss_pred EEECCCCCCHHHHH
Confidence 45699999999554
No 155
>KOG0739|consensus
Probab=64.50 E-value=1.5 Score=40.17 Aligned_cols=66 Identities=21% Similarity=0.484 Sum_probs=41.4
Q ss_pred eeecccCCCCCCcceehhhhHHhH-Hhhhcchh---hhhhhhcccCCCceEeeh-----------------------HHH
Q psy7226 29 IFDNIFGPNDSNETIFTEVLVPLI-NHMFNGIN---ATLLAYGQTGGGKTYTVS-----------------------AMI 81 (279)
Q Consensus 29 ~FD~Vf~~~a~Q~~vf~~~~~plv-~~~l~G~n---~~i~aYG~tgSGKTyTm~-----------------------Gii 81 (279)
.++.|=+-+..-+.+=+.++-|+- .++|.|.- ..|+.||+.|+||+|..- |--
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 334444444333444444455543 56777765 568999999999999642 555
Q ss_pred HHHHHHHHHHcCc
Q psy7226 82 MKTLQHVMQRCNK 94 (279)
Q Consensus 82 ~r~l~~lf~~~~~ 94 (279)
-+.+..||+...+
T Consensus 211 EkLVknLFemARe 223 (439)
T KOG0739|consen 211 EKLVKNLFEMARE 223 (439)
T ss_pred HHHHHHHHHHHHh
Confidence 5667777776655
No 156
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=64.49 E-value=1.7 Score=36.91 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=15.0
Q ss_pred hhhhhhhcccCCCceEeehHHHH
Q psy7226 60 NATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
...++.-|+.|||||+.+..++.
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~ 37 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLE 37 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHhhh
Confidence 34567789999999976554433
No 157
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=63.92 E-value=1.8 Score=38.88 Aligned_cols=13 Identities=46% Similarity=0.744 Sum_probs=11.3
Q ss_pred hcccCCCceEeeh
Q psy7226 66 YGQTGGGKTYTVS 78 (279)
Q Consensus 66 YG~tgSGKTyTm~ 78 (279)
.|++|||||+||-
T Consensus 33 iGpSGsGKTTtLk 45 (309)
T COG1125 33 IGPSGSGKTTTLK 45 (309)
T ss_pred ECCCCCcHHHHHH
Confidence 4999999999874
No 158
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=63.71 E-value=1.6 Score=39.61 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=16.8
Q ss_pred chhhhhhhhcccCCCceEee
Q psy7226 58 GINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 58 G~n~~i~aYG~tgSGKTyTm 77 (279)
.-+.+|.-+|+.|||||+.|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45678889999999999764
No 159
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=63.53 E-value=2.5 Score=40.17 Aligned_cols=18 Identities=39% Similarity=0.625 Sum_probs=14.8
Q ss_pred hhhhhhcccCCCceEeeh
Q psy7226 61 ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~ 78 (279)
-.|+-||++|+|||+.+.
T Consensus 180 kgvLL~GppGTGKT~LAk 197 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAK 197 (398)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458889999999997653
No 160
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=63.13 E-value=0.66 Score=36.87 Aligned_cols=46 Identities=22% Similarity=0.220 Sum_probs=27.7
Q ss_pred hhcccCCCceEeehHHHHHHHHHHHHHcCc---cc--------hhhhHHHHhhhhhhhhcC
Q psy7226 65 AYGQTGGGKTYTVSAMIMKTLQHVMQRCNK---DD--------VYMSYLQLYSEKCYDLLN 114 (279)
Q Consensus 65 aYG~tgSGKTyTm~Gii~r~l~~lf~~~~~---~~--------v~vS~~EIy~E~v~DLL~ 114 (279)
-.|+||+||||+- ..+.+.||..--. +. -.-+.++-|.+++.+.+.
T Consensus 58 fHG~tGtGKn~v~----~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I~ 114 (127)
T PF06309_consen 58 FHGWTGTGKNFVS----RLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWIR 114 (127)
T ss_pred eecCCCCcHHHHH----HHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHHH
Confidence 4599999999862 3334455654222 11 123567778887777664
No 161
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=62.87 E-value=2.2 Score=36.39 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=23.9
Q ss_pred hhhhhhcccCCCceEeehHHHHHHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIMKTLQH 87 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~r~l~~ 87 (279)
..|..||.+|.|||+...|+..|++..
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~ 49 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGH 49 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHC
Confidence 578899999999999999998888764
No 162
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=62.60 E-value=2.9 Score=35.93 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=24.5
Q ss_pred hHHhHHhhhcch---hhhhhhhcccCCCceEeehHHHH
Q psy7226 48 LVPLINHMFNGI---NATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 48 ~~plv~~~l~G~---n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
.-|-+|.++.|- ...++-+|++|||||..+.-++.
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~ 45 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAV 45 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 456677888533 34567889999999977654443
No 163
>PTZ00424 helicase 45; Provisional
Probab=62.45 E-value=2.9 Score=39.10 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=19.8
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEee
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm 77 (279)
...+..+++|.|. +..++||||||.+.
T Consensus 56 ~~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 56 QRGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 3455667788885 45689999999754
No 164
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=62.44 E-value=2.4 Score=40.70 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=18.3
Q ss_pred hhhhhcccCCCceEeehHHHHHHH
Q psy7226 62 TLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
.++-.|++|+|||+|+..|..+..
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 456669999999999886655543
No 165
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=62.33 E-value=1.7 Score=35.95 Aligned_cols=31 Identities=26% Similarity=0.575 Sum_probs=19.9
Q ss_pred HhHHhhhcchhhhhhhhcccCCCceEeehHHHH
Q psy7226 50 PLINHMFNGINATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 50 plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
+-+...+.| ..++| .|++|.|||..+-.|+|
T Consensus 27 ~~l~~~l~~-k~~vl-~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 27 EELKELLKG-KTSVL-LGQSGVGKSSLINALLP 57 (161)
T ss_dssp HHHHHHHTT-SEEEE-ECSTTSSHHHHHHHHHT
T ss_pred HHHHHHhcC-CEEEE-ECCCCCCHHHHHHHHHh
Confidence 334455667 44444 49999999966555544
No 166
>PRK04328 hypothetical protein; Provisional
Probab=62.09 E-value=2.7 Score=37.09 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=21.7
Q ss_pred HHhHHhhhcc---hhhhhhhhcccCCCceE
Q psy7226 49 VPLINHMFNG---INATLLAYGQTGGGKTY 75 (279)
Q Consensus 49 ~plv~~~l~G---~n~~i~aYG~tgSGKTy 75 (279)
-+-+|.++.| ....++-+|++|+|||.
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 4567888876 57788889999999994
No 167
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=61.88 E-value=1.5 Score=38.22 Aligned_cols=18 Identities=44% Similarity=0.739 Sum_probs=15.3
Q ss_pred hhhhhhcccCCCceEeeh
Q psy7226 61 ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~ 78 (279)
..++-||++|+|||+++-
T Consensus 13 ~~~liyG~~G~GKtt~a~ 30 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIK 30 (220)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 457899999999998764
No 168
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=61.60 E-value=2.2 Score=36.19 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=15.0
Q ss_pred hhhhhhhcccCCCceEeeh
Q psy7226 60 NATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~ 78 (279)
...+.-||++|||||..+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~ 30 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICM 30 (209)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4566788999999997654
No 169
>PRK13342 recombination factor protein RarA; Reviewed
Probab=61.54 E-value=1.7 Score=41.40 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=17.0
Q ss_pred cchhhhhhhhcccCCCceEeehH
Q psy7226 57 NGINATLLAYGQTGGGKTYTVSA 79 (279)
Q Consensus 57 ~G~n~~i~aYG~tgSGKTyTm~G 79 (279)
.+.-..++-||+.|+|||+.+.-
T Consensus 33 ~~~~~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 33 AGRLSSMILWGPPGTGKTTLARI 55 (413)
T ss_pred cCCCceEEEECCCCCCHHHHHHH
Confidence 45445677799999999976543
No 170
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=61.43 E-value=3.8 Score=38.91 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=28.0
Q ss_pred cceehhhhHHhHHhhhcc----hhhhhhhhcccCCCceEeehHHHHHHH
Q psy7226 41 ETIFTEVLVPLINHMFNG----INATLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 41 ~~vf~~~~~plv~~~l~G----~n~~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
...|.....-++.++.+- ...-|.-.||||-|||+|+.=|..|..
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 344555444454444443 244556679999999999876555544
No 171
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=61.37 E-value=3.2 Score=39.53 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=19.9
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEe
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
...+..+++|.+ +++.++||||||.+
T Consensus 29 ~~ai~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 29 AEAIPPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHHHHHhCCCC--EEEECCCCChHHHH
Confidence 344556678887 67778999999976
No 172
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=61.31 E-value=1.7 Score=40.65 Aligned_cols=17 Identities=41% Similarity=0.677 Sum_probs=14.4
Q ss_pred hhhhhcccCCCceEeeh
Q psy7226 62 TLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~ 78 (279)
.++-||++|+|||+.+.
T Consensus 158 gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAK 174 (364)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47889999999997754
No 173
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=61.23 E-value=3.9 Score=42.01 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=27.6
Q ss_pred hHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 48 LVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 48 ~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
+..+++-+..+....++-||++|+|||..+.|+..+...
T Consensus 191 i~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 191 LERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 344554444444556788999999999988888777654
No 174
>KOG0335|consensus
Probab=61.22 E-value=3.1 Score=40.32 Aligned_cols=20 Identities=45% Similarity=0.604 Sum_probs=15.4
Q ss_pred hcchhhhhhhhcccCCCceEee
Q psy7226 56 FNGINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 56 l~G~n~~i~aYG~tgSGKTyTm 77 (279)
.+|.. ++|++|||||||+.-
T Consensus 109 ~~Grd--l~acAqTGsGKT~aF 128 (482)
T KOG0335|consen 109 SGGRD--LMACAQTGSGKTAAF 128 (482)
T ss_pred ecCCc--eEEEccCCCcchHHH
Confidence 34554 489999999999873
No 175
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=60.83 E-value=1.5 Score=44.48 Aligned_cols=50 Identities=26% Similarity=0.497 Sum_probs=31.9
Q ss_pred EeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHH
Q psy7226 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 28 f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
|....-|.|.-.|..-++. +++.+-+|.... +.+|.||||||+||..++.
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~ 51 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIA 51 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHH
Confidence 4455567777777665544 444444553222 3679999999999875543
No 176
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=60.60 E-value=3.4 Score=40.01 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=19.5
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEe
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
...+..+++|.|+.+ ..+||||||.+
T Consensus 115 ~~ai~~~~~G~dvi~--~apTGSGKTla 140 (475)
T PRK01297 115 AQVLGYTLAGHDAIG--RAQTGTGKTAA 140 (475)
T ss_pred HHHHHHHhCCCCEEE--ECCCCChHHHH
Confidence 345667789988654 45999999965
No 177
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=60.54 E-value=2.5 Score=39.09 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=46.2
Q ss_pred cccCCCCCCcceehhhhHHhHHhhh-cchhhhhhhhcccCCCceEeeh--HHHHHHHHHHHHH-c-CccchhhhHHHHhh
Q psy7226 32 NIFGPNDSNETIFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTVS--AMIMKTLQHVMQR-C-NKDDVYMSYLQLYS 106 (279)
Q Consensus 32 ~Vf~~~a~Q~~vf~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyTm~--Gii~r~l~~lf~~-~-~~~~v~vS~~EIy~ 106 (279)
.|-..+.++.+-=.++...+|+.++ .|+. .|.||..|.|||+.+. +|..-+-..+|.. . +.-.|-.=-+|.|.
T Consensus 62 ~v~a~~~~~~eWdrs~~P~lId~~fr~g~~--~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~r 139 (402)
T COG3598 62 QVQAEAMRLSEWDRSNSPQLIDEFFRKGYV--SILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYR 139 (402)
T ss_pred EehhhhcChhhcCcccChhhhhHHhhcCee--EEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccCh
Confidence 5555555544433444455676655 4654 4779999999998876 7777777788872 2 22333333356665
Q ss_pred hhh
Q psy7226 107 EKC 109 (279)
Q Consensus 107 E~v 109 (279)
|.+
T Consensus 140 e~~ 142 (402)
T COG3598 140 EDI 142 (402)
T ss_pred HHH
Confidence 543
No 178
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=60.36 E-value=4.1 Score=44.31 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=23.9
Q ss_pred cceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHHHH
Q psy7226 41 ETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQH 87 (279)
Q Consensus 41 ~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~~ 87 (279)
-.||..- ..++ ..+.+..+ ++..|+||||||. .||..+.+
T Consensus 73 LPi~~~r-~~Il-~ai~~~~V-viI~GeTGSGKTT----qlPq~lle 112 (1294)
T PRK11131 73 LPVSQKK-QDIL-EAIRDHQV-VIVAGETGSGKTT----QLPKICLE 112 (1294)
T ss_pred CCHHHHH-HHHH-HHHHhCCe-EEEECCCCCCHHH----HHHHHHHH
Confidence 4455543 3444 34455444 4555999999997 45655444
No 179
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=60.32 E-value=3.1 Score=42.38 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=26.0
Q ss_pred ceehhhhHHhHHhhh-cchhhhhhhhcccCCCceEeeh
Q psy7226 42 TIFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 42 ~vf~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
.||.-. ......++ .+.|-||+..|.+|||||.++-
T Consensus 67 Hif~~a-~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~k 103 (689)
T PF00063_consen 67 HIFAVA-QRAYRQMLRTRQNQSIIISGESGSGKTETSK 103 (689)
T ss_dssp SHHHHH-HHHHHHHHHHTSEEEEEEEESTTSSHHHHHH
T ss_pred ccchhh-hcccccccccccccceeeccccccccccchH
Confidence 455444 33334443 5889999999999999999854
No 180
>KOG0726|consensus
Probab=60.28 E-value=3.4 Score=37.78 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=26.1
Q ss_pred hhhhhcccCCCceEeeh-----------------------HHHHHHHHHHHHHcCc
Q psy7226 62 TLLAYGQTGGGKTYTVS-----------------------AMIMKTLQHVMQRCNK 94 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~-----------------------Gii~r~l~~lf~~~~~ 94 (279)
-|+.||..|+|||...- |==|+.+++||+...+
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e 276 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE 276 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHh
Confidence 36889999999986431 5568889999988766
No 181
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=60.18 E-value=3.1 Score=40.07 Aligned_cols=17 Identities=35% Similarity=0.653 Sum_probs=13.9
Q ss_pred hhhhhcccCCCceEeeh
Q psy7226 62 TLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~ 78 (279)
.++-||++|+|||.++-
T Consensus 219 gVLL~GPPGTGKT~LAr 235 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAK 235 (438)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999997654
No 182
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=60.08 E-value=3.5 Score=35.76 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=24.1
Q ss_pred hHHhHHhhhcch---hhhhhhhcccCCCceEeehHHH
Q psy7226 48 LVPLINHMFNGI---NATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 48 ~~plv~~~l~G~---n~~i~aYG~tgSGKTyTm~Gii 81 (279)
+-+-+|.++.|- ..+++.+|.+|||||+-...++
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~ 46 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFV 46 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHH
Confidence 456677777643 5667788999999997655443
No 183
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=59.93 E-value=2.7 Score=40.99 Aligned_cols=19 Identities=37% Similarity=0.520 Sum_probs=15.4
Q ss_pred hhhhhcccCCCceEeehHH
Q psy7226 62 TLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gi 80 (279)
.++-||++|+|||+.+..+
T Consensus 90 giLL~GppGtGKT~la~al 108 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAV 108 (495)
T ss_pred cEEEECCCCCCHHHHHHHH
Confidence 5788999999999876533
No 184
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=59.92 E-value=2.7 Score=37.89 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=17.1
Q ss_pred cchhhhhhhhcccCCCceEeehHH
Q psy7226 57 NGINATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 57 ~G~n~~i~aYG~tgSGKTyTm~Gi 80 (279)
.|....++-||+.|+|||+++.-+
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~~~l 58 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAALAL 58 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHH
Confidence 344344788999999999776533
No 185
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=59.90 E-value=3 Score=43.86 Aligned_cols=28 Identities=39% Similarity=0.662 Sum_probs=22.3
Q ss_pred hhhhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 59 INATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 59 ~n~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
.|.-.+..|+||||||++|..++...+.
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~~li~q~~~ 501 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLTNLLMQVMA 501 (893)
T ss_pred CcccEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3666678899999999999877766654
No 186
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=59.87 E-value=3.5 Score=39.22 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=18.8
Q ss_pred HhHHhhhcchhhhhhhhcccCCCceEe
Q psy7226 50 PLINHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 50 plv~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
..+..+++|.|. ++-++||||||.+
T Consensus 37 ~aip~il~g~dv--i~~ApTGsGKTla 61 (423)
T PRK04837 37 LALPLTLAGRDV--AGQAQTGTGKTMA 61 (423)
T ss_pred HHHHHHhCCCcE--EEECCCCchHHHH
Confidence 345567789885 5566999999976
No 187
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=59.54 E-value=3 Score=35.91 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=22.2
Q ss_pred HHhHHhhhcc---hhhhhhhhcccCCCceEeeh
Q psy7226 49 VPLINHMFNG---INATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 49 ~plv~~~l~G---~n~~i~aYG~tgSGKTyTm~ 78 (279)
-+-+|.++.| ....+.-+|++|||||..+.
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLCH 37 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHHH
Confidence 4567777775 44566788999999997654
No 188
>KOG0652|consensus
Probab=59.52 E-value=4.2 Score=36.67 Aligned_cols=14 Identities=50% Similarity=0.859 Sum_probs=12.3
Q ss_pred hhhhhcccCCCceE
Q psy7226 62 TLLAYGQTGGGKTY 75 (279)
Q Consensus 62 ~i~aYG~tgSGKTy 75 (279)
-++.||+.|+|||.
T Consensus 207 GvLmYGPPGTGKTl 220 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTL 220 (424)
T ss_pred ceEeeCCCCCcHHH
Confidence 47899999999994
No 189
>PRK04195 replication factor C large subunit; Provisional
Probab=58.97 E-value=2.8 Score=40.75 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=20.1
Q ss_pred HHhHHhhhcch-hhhhhhhcccCCCceEeeh
Q psy7226 49 VPLINHMFNGI-NATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 49 ~plv~~~l~G~-n~~i~aYG~tgSGKTyTm~ 78 (279)
..++.....|. .-.++-||++|+|||+++.
T Consensus 27 ~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 27 REWIESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 44444444443 4567889999999997654
No 190
>PRK10536 hypothetical protein; Provisional
Probab=58.63 E-value=3 Score=37.36 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=16.3
Q ss_pred hhhhhhcccCCCceEeehHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gi 80 (279)
..++..|++||||||....+
T Consensus 75 ~lV~i~G~aGTGKT~La~a~ 94 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAK 94 (262)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 37889999999999886543
No 191
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=58.15 E-value=4.1 Score=39.27 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=19.9
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEee
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm 77 (279)
...+..+++|.| +++..+||||||.+.
T Consensus 29 ~~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 29 QQAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 344566678887 566679999999763
No 192
>KOG3859|consensus
Probab=57.47 E-value=2.7 Score=38.11 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=25.6
Q ss_pred hhhhHHhHH-hhhcchhhhhhhhcccCCCceEeeh
Q psy7226 45 TEVLVPLIN-HMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 45 ~~~~~plv~-~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
+.+-..||. ++-+|+.--|+|.|.||.|||..|-
T Consensus 26 dsLPdQLV~ksv~~GF~FNilCvGETg~GKsTLmd 60 (406)
T KOG3859|consen 26 DSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMD 60 (406)
T ss_pred ccChHHHHHHHHhcCceEEEEEeccCCccHHHHHH
Confidence 333345664 4557999999999999999997653
No 193
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=57.37 E-value=1.9 Score=38.84 Aligned_cols=17 Identities=47% Similarity=0.628 Sum_probs=14.1
Q ss_pred hhhhhcccCCCceEeeh
Q psy7226 62 TLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~ 78 (279)
.++-||++|+|||+.+.
T Consensus 32 ~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAH 48 (305)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 36779999999997755
No 194
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=57.13 E-value=3 Score=39.56 Aligned_cols=54 Identities=24% Similarity=0.367 Sum_probs=31.6
Q ss_pred CCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHHHHHHHHcCc
Q psy7226 39 SNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQHVMQRCNK 94 (279)
Q Consensus 39 ~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~~lf~~~~~ 94 (279)
.|+.+.-. ..|+=.-+-.|.-.+.+-||+.|+||| |+.-+|......-|..+..
T Consensus 28 GQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKT-TlA~liA~~~~~~f~~~sA 81 (436)
T COG2256 28 GQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKT-TLARLIAGTTNAAFEALSA 81 (436)
T ss_pred ChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHH-HHHHHHHHhhCCceEEecc
Confidence 35455433 233333333566677888999999999 5554555554444544443
No 195
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=57.07 E-value=3.1 Score=34.86 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=22.9
Q ss_pred hhhhhhcccCCCceEeehHHHHHHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIMKTLQH 87 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~r~l~~ 87 (279)
+.|..|+.+|.|||+...|+..|++..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~ 32 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGH 32 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHC
Confidence 467788889999999999998888754
No 196
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=56.90 E-value=4.4 Score=36.01 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=19.4
Q ss_pred hhHHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 47 VLVPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 47 ~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
+.+.++..+..|.+. +-+|++|+|||....
T Consensus 10 l~~~~l~~l~~g~~v--LL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 10 VTSRALRYLKSGYPV--HLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHHHhcCCeE--EEEcCCCCCHHHHHH
Confidence 334444445556554 568999999996543
No 197
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=56.87 E-value=3.5 Score=42.61 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=19.0
Q ss_pred hhhhhhhcccCCCceEeehHHHHHH
Q psy7226 60 NATLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
|.-++..|.||||||++|.-|+...
T Consensus 430 n~n~~I~G~tGsGKS~~~~~l~~~~ 454 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQELIVDN 454 (797)
T ss_pred ccceEEEcCCCCCHHHHHHHHHHHH
Confidence 3446777999999999988666444
No 198
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=56.66 E-value=4.4 Score=39.02 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=17.8
Q ss_pred hhhhhhcccCCCceEeehHHHHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
.-++..|+||||||.++ ++|.++
T Consensus 45 ~h~lvig~tgSGKt~~~--viP~ll 67 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF--VIPNLL 67 (469)
T ss_pred eEEEEEeCCCCCcccee--eHhHHH
Confidence 45788899999999987 456544
No 199
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=56.45 E-value=4.4 Score=35.57 Aligned_cols=52 Identities=27% Similarity=0.310 Sum_probs=30.2
Q ss_pred ccCCCCCCcceehhhhHHhHHhhhc-c-hhhhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 33 IFGPNDSNETIFTEVLVPLINHMFN-G-INATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 33 Vf~~~a~Q~~vf~~~~~plv~~~l~-G-~n~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
-|++-..|+++-... ..+++.+.. + .-..++-||+.|.||| |+..||...+.
T Consensus 22 ~L~efiGQ~~l~~~l-~i~i~aa~~r~~~l~h~lf~GPPG~GKT-TLA~IIA~e~~ 75 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNL-KILIRAAKKRGEALDHMLFYGPPGLGKT-TLARIIANELG 75 (233)
T ss_dssp SCCCS-S-HHHHHHH-HHHHHHHHCTTS---EEEEESSTTSSHH-HHHHHHHHHCT
T ss_pred CHHHccCcHHHHhhh-HHHHHHHHhcCCCcceEEEECCCccchh-HHHHHHHhccC
Confidence 345556677777653 667766653 2 2345788999999998 44444444333
No 200
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=56.37 E-value=2.8 Score=34.03 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=10.3
Q ss_pred hhhcccCCCceEe
Q psy7226 64 LAYGQTGGGKTYT 76 (279)
Q Consensus 64 ~aYG~tgSGKTyT 76 (279)
+..|++|||||+.
T Consensus 2 ~l~G~~GsGKSTl 14 (163)
T TIGR01313 2 VLMGVAGSGKSTI 14 (163)
T ss_pred EEECCCCCCHHHH
Confidence 4569999999843
No 201
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=56.06 E-value=1.9 Score=41.62 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=15.9
Q ss_pred hhhhcccCCCceEeeh---HHHH
Q psy7226 63 LLAYGQTGGGKTYTVS---AMIM 82 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~---Gii~ 82 (279)
++.||+.|||||.... ||+|
T Consensus 201 Ll~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 201 LLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred EEEecCCCCchHHhhhhhcccCC
Confidence 5788999999997743 6665
No 202
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=56.04 E-value=3.7 Score=33.92 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=22.6
Q ss_pred hhhhhhcccCCCceEeehHHHHHHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIMKTLQH 87 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~r~l~~ 87 (279)
+.|..|+.+|.|||+...|+..|++..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~ 29 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH 29 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 356778889999999999998888765
No 203
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=55.93 E-value=4.1 Score=37.87 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=22.7
Q ss_pred hhhHHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 46 EVLVPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 46 ~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
.....++..++.+. ..|+-.|.||||||.+|.
T Consensus 165 ~~~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 165 PGVARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 34466777766654 566777999999997654
No 204
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=55.87 E-value=2.8 Score=34.63 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=11.9
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
|+.+|+.|||||+.
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999965
No 205
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=55.56 E-value=2.8 Score=33.47 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=11.4
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
|+..|+.|||||+.
T Consensus 2 i~l~G~~GsGKST~ 15 (150)
T cd02021 2 IVVMGVSGSGKSTV 15 (150)
T ss_pred EEEEcCCCCCHHHH
Confidence 45679999999965
No 206
>PRK13767 ATP-dependent helicase; Provisional
Probab=55.40 E-value=4.9 Score=42.18 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=18.8
Q ss_pred hHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 51 LINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 51 lv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
.+..+++|.|+.|. .+||||||...+
T Consensus 40 Ai~~il~g~nvli~--APTGSGKTlaa~ 65 (876)
T PRK13767 40 AIPLIHEGKNVLIS--SPTGSGKTLAAF 65 (876)
T ss_pred HHHHHHcCCCEEEE--CCCCCcHHHHHH
Confidence 44556789886554 599999998743
No 207
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.21 E-value=3.9 Score=38.78 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=17.3
Q ss_pred hhhhhcccCCCceEeehHHHHH
Q psy7226 62 TLLAYGQTGGGKTYTVSAMIMK 83 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gii~r 83 (279)
.++-.|++|+|||+|+..|...
T Consensus 208 ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4567799999999998876544
No 208
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=55.19 E-value=4.7 Score=37.86 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=15.8
Q ss_pred hhhhcccCCCceEeehHHHHHHH
Q psy7226 63 LLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
++..|+||||||+++. +|..+
T Consensus 2 ~lv~g~tGsGKt~~~v--iP~ll 22 (384)
T cd01126 2 VLVFAPTRSGKGVGFV--IPNLL 22 (384)
T ss_pred eeEecCCCCCCccEEE--ccchh
Confidence 4678999999999873 55444
No 209
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=55.17 E-value=3.8 Score=33.71 Aligned_cols=16 Identities=38% Similarity=0.355 Sum_probs=12.8
Q ss_pred hhhhcccCCCceEeeh
Q psy7226 63 LLAYGQTGGGKTYTVS 78 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~ 78 (279)
++-+|++|+|||..+.
T Consensus 2 ~li~G~~G~GKT~l~~ 17 (187)
T cd01124 2 TLLSGGPGTGKTTFAL 17 (187)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 4678999999997544
No 210
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=55.13 E-value=4.6 Score=34.74 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=22.2
Q ss_pred HhHHhhhc-ch--hhhhhhhcccCCCceEeehHHHH
Q psy7226 50 PLINHMFN-GI--NATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 50 plv~~~l~-G~--n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
+-+|.++. |. ..+++-+|++|+|||+.+..++.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~ 42 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAY 42 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHH
Confidence 44566663 43 45677889999999976654443
No 211
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=55.12 E-value=5.1 Score=34.26 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=23.0
Q ss_pred hHHhHHhhhc-ch--hhhhhhhcccCCCceEeehHHH
Q psy7226 48 LVPLINHMFN-GI--NATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 48 ~~plv~~~l~-G~--n~~i~aYG~tgSGKTyTm~Gii 81 (279)
.-+-+|.++. |. ...+.-+|++|+|||..+.-++
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia 40 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLA 40 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHH
Confidence 3466777775 33 3445678999999998765443
No 212
>PRK07261 topology modulation protein; Provisional
Probab=54.95 E-value=2.9 Score=34.64 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=11.2
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
|+-.|.+|||||+-
T Consensus 3 i~i~G~~GsGKSTl 16 (171)
T PRK07261 3 IAIIGYSGSGKSTL 16 (171)
T ss_pred EEEEcCCCCCHHHH
Confidence 45679999999954
No 213
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=54.79 E-value=2.9 Score=37.80 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=17.1
Q ss_pred cchhhhhhhhcccCCCceEe
Q psy7226 57 NGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 57 ~G~n~~i~aYG~tgSGKTyT 76 (279)
.|++-+||..|++|+|||.-
T Consensus 1 kg~~fnImVvG~sG~GKTTF 20 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTF 20 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHH
T ss_pred CCceEEEEEECCCCCCHHHH
Confidence 37788999999999999943
No 214
>PHA02244 ATPase-like protein
Probab=54.47 E-value=4.9 Score=37.93 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=21.4
Q ss_pred cceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 41 ETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 41 ~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
...+......+...+-.|.+ |+-+|++|+|||+.+.
T Consensus 102 sp~~~~~~~ri~r~l~~~~P--VLL~GppGtGKTtLA~ 137 (383)
T PHA02244 102 NPTFHYETADIAKIVNANIP--VFLKGGAGSGKNHIAE 137 (383)
T ss_pred CHHHHHHHHHHHHHHhcCCC--EEEECCCCCCHHHHHH
Confidence 33444443444333334555 4558999999997654
No 215
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=54.43 E-value=5.4 Score=37.29 Aligned_cols=46 Identities=28% Similarity=0.491 Sum_probs=29.7
Q ss_pred eEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHH
Q psy7226 27 VFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 27 ~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gi 80 (279)
.|.|+.|-+.+ + ...-|+..+.+..-+.|+-+|.+|||||+.+-++
T Consensus 13 ~~pf~~ivGq~----~----~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~ 58 (350)
T CHL00081 13 VFPFTAIVGQE----E----MKLALILNVIDPKIGGVMIMGDRGTGKSTTIRAL 58 (350)
T ss_pred CCCHHHHhChH----H----HHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 57888777644 2 2344444554433345788999999999875433
No 216
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=54.40 E-value=2.4 Score=38.87 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=14.9
Q ss_pred hhhhhhcccCCCceEeeh
Q psy7226 61 ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~ 78 (279)
..++-||++|+|||+.+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 357789999999998765
No 217
>PRK00131 aroK shikimate kinase; Reviewed
Probab=54.28 E-value=2.9 Score=33.89 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=13.9
Q ss_pred hhhhhcccCCCceEeeh
Q psy7226 62 TLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~ 78 (279)
.|+.+|.+|||||+...
T Consensus 6 ~i~l~G~~GsGKstla~ 22 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGR 22 (175)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 57888999999996643
No 218
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=54.06 E-value=5.9 Score=40.38 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=26.4
Q ss_pred cceehhhhHHhHHhhh-cchhhhhhhhcccCCCceEeeh
Q psy7226 41 ETIFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 41 ~~vf~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
-.||.-+ ......++ .+.|-||+.-|.+|||||.+.-
T Consensus 73 PHifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k 110 (677)
T smart00242 73 PHVFAIA-DNAYRNMLNDKENQSIIISGESGAGKTENTK 110 (677)
T ss_pred CCHHHHH-HHHHHHHHhcCCCceEEEecCCCCcchHHHH
Confidence 3455444 33333433 5899999999999999999865
No 219
>PRK05580 primosome assembly protein PriA; Validated
Probab=53.98 E-value=5.3 Score=40.69 Aligned_cols=18 Identities=39% Similarity=0.449 Sum_probs=14.5
Q ss_pred hhhhhhcccCCCceEeeh
Q psy7226 61 ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~ 78 (279)
..++.+|+||||||....
T Consensus 163 ~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 163 SPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CcEEEECCCCChHHHHHH
Confidence 347888999999997653
No 220
>PRK08118 topology modulation protein; Reviewed
Probab=53.63 E-value=3.1 Score=34.34 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=11.0
Q ss_pred hhhhcccCCCceE
Q psy7226 63 LLAYGQTGGGKTY 75 (279)
Q Consensus 63 i~aYG~tgSGKTy 75 (279)
|+-.|+.|||||+
T Consensus 4 I~I~G~~GsGKST 16 (167)
T PRK08118 4 IILIGSGGSGKST 16 (167)
T ss_pred EEEECCCCCCHHH
Confidence 5667999999994
No 221
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=53.55 E-value=4.3 Score=36.48 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=17.9
Q ss_pred HhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 50 PLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 50 plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
-+++.++.. +--++-.|++|+|||.++.
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHHH
Confidence 344444443 3345778999999996543
No 222
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=53.50 E-value=3.3 Score=34.17 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=11.8
Q ss_pred hhhhcccCCCceEee
Q psy7226 63 LLAYGQTGGGKTYTV 77 (279)
Q Consensus 63 i~aYG~tgSGKTyTm 77 (279)
.+-||++|+|||..|
T Consensus 22 ~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 22 NVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 356799999999654
No 223
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.40 E-value=6 Score=38.28 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=19.2
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEe
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
...|..++.|.++ ++..+||||||.+
T Consensus 17 ~~ai~~~l~g~dv--lv~apTGsGKTl~ 42 (470)
T TIGR00614 17 LEVINAVLLGRDC--FVVMPTGGGKSLC 42 (470)
T ss_pred HHHHHHHHcCCCE--EEEcCCCCcHhHH
Confidence 4456677889875 4556999999954
No 224
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=53.37 E-value=3.4 Score=37.95 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=15.8
Q ss_pred hhhhhcccCCCceEeehHHHH
Q psy7226 62 TLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gii~ 82 (279)
+|+-.|.||||||+.|.-++.
T Consensus 145 siii~G~t~sGKTt~lnall~ 165 (312)
T COG0630 145 SIIICGGTASGKTTLLNALLD 165 (312)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 456679999999988764433
No 225
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=53.26 E-value=3.1 Score=36.05 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=10.4
Q ss_pred cccCCCceEeeh
Q psy7226 67 GQTGGGKTYTVS 78 (279)
Q Consensus 67 G~tgSGKTyTm~ 78 (279)
|++|||||+++.
T Consensus 6 G~sGSGKTTla~ 17 (220)
T cd02025 6 GSVAVGKSTTAR 17 (220)
T ss_pred CCCCCCHHHHHH
Confidence 999999998754
No 226
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.23 E-value=4.1 Score=37.98 Aligned_cols=55 Identities=22% Similarity=0.272 Sum_probs=36.5
Q ss_pred hhhhcccCCCceEeeh---------------------HHHHHHHHHHHHHcCc-----------cchhhhHHHHhhhhhh
Q psy7226 63 LLAYGQTGGGKTYTVS---------------------AMIMKTLQHVMQRCNK-----------DDVYMSYLQLYSEKCY 110 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~---------------------Gii~r~l~~lf~~~~~-----------~~v~vS~~EIy~E~v~ 110 (279)
|+..|+||-|||-..- |-+.|-++.+...+-+ ..|..-.-|.-.|++.
T Consensus 53 ILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRil 132 (444)
T COG1220 53 ILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERIL 132 (444)
T ss_pred eEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999996531 5444444433333222 4566667777899999
Q ss_pred hhcCCCe
Q psy7226 111 DLLNGNK 117 (279)
Q Consensus 111 DLL~~~~ 117 (279)
|+|-|..
T Consensus 133 d~Lvp~~ 139 (444)
T COG1220 133 DALVPPA 139 (444)
T ss_pred HHhcCCc
Confidence 9998653
No 227
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=52.98 E-value=6.1 Score=39.42 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=20.3
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEee
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm 77 (279)
..++..+++|.++. +.-+||+|||.+.
T Consensus 19 ~~~i~~il~g~dvl--v~~PTG~GKTl~y 45 (591)
T TIGR01389 19 EEIISHVLDGRDVL--VVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHHcCCCEE--EEcCCCccHhHHH
Confidence 55667778999854 4459999999763
No 228
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=52.88 E-value=3.3 Score=38.75 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=11.6
Q ss_pred hhcccCCCceEeeh
Q psy7226 65 AYGQTGGGKTYTVS 78 (279)
Q Consensus 65 aYG~tgSGKTyTm~ 78 (279)
-.|++|||||++|-
T Consensus 36 lLGPSGcGKTTlLR 49 (352)
T COG3842 36 LLGPSGCGKTTLLR 49 (352)
T ss_pred EECCCCCCHHHHHH
Confidence 34999999998863
No 229
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=52.88 E-value=3.2 Score=37.50 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=19.0
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
.||+ ..+.--+..+-.||+|++|||.++.
T Consensus 183 ~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~ 211 (286)
T PF06048_consen 183 APLL-SLLGVEGFGFHLYGQSSSGKTTALQ 211 (286)
T ss_pred HHHH-HHhCCCceEEEEEeCCCCCHHHHHH
Confidence 3444 3334444556678999999997764
No 230
>KOG0736|consensus
Probab=52.81 E-value=5 Score=41.18 Aligned_cols=17 Identities=41% Similarity=0.720 Sum_probs=14.6
Q ss_pred hhhhhhhcccCCCceEe
Q psy7226 60 NATLLAYGQTGGGKTYT 76 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyT 76 (279)
-+-|+-||+.|+|||-.
T Consensus 705 RSGILLYGPPGTGKTLl 721 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLL 721 (953)
T ss_pred cceeEEECCCCCchHHH
Confidence 36799999999999964
No 231
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=52.51 E-value=5.4 Score=34.03 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=22.3
Q ss_pred HHhHHhhhc-chh--hhhhhhcccCCCceEeehHHH
Q psy7226 49 VPLINHMFN-GIN--ATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 49 ~plv~~~l~-G~n--~~i~aYG~tgSGKTyTm~Gii 81 (279)
-+-+|.++. |.. ..+..+|++|||||..+.-++
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a 40 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLA 40 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHH
Confidence 345677775 433 346788999999997755443
No 232
>KOG0330|consensus
Probab=52.50 E-value=6 Score=37.43 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=19.3
Q ss_pred HhHHhhhcchhhhhhhhcccCCCceEee
Q psy7226 50 PLINHMFNGINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 50 plv~~~l~G~n~~i~aYG~tgSGKTyTm 77 (279)
..|..++.|.++..+| +||||||-+-
T Consensus 90 ~aiP~~L~g~dvIglA--eTGSGKT~af 115 (476)
T KOG0330|consen 90 EAIPVALGGRDVIGLA--ETGSGKTGAF 115 (476)
T ss_pred hhcchhhCCCcEEEEe--ccCCCchhhh
Confidence 3455578898875555 9999999774
No 233
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=52.48 E-value=4.6 Score=37.21 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=15.4
Q ss_pred hhhhhhcccCCCceEeehHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gi 80 (279)
..|.-.|++|+|||.|+.-|
T Consensus 115 ~vi~lvGpnGsGKTTt~~kL 134 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKL 134 (318)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 35556799999999987644
No 234
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=52.39 E-value=6.1 Score=38.80 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=18.4
Q ss_pred HhHHhhhcchhhhhhhhcccCCCceEe
Q psy7226 50 PLINHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 50 plv~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
..+..++.|.|+ ++..+||||||.+
T Consensus 150 ~aip~il~g~dv--iv~ApTGSGKTla 174 (518)
T PLN00206 150 QAIPAALSGRSL--LVSADTGSGKTAS 174 (518)
T ss_pred HHHHHHhcCCCE--EEEecCCCCccHH
Confidence 345566788874 5667999999965
No 235
>PHA02653 RNA helicase NPH-II; Provisional
Probab=52.32 E-value=6.1 Score=40.26 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=17.7
Q ss_pred hHHhhhcchhhhhhhhcccCCCceEee
Q psy7226 51 LINHMFNGINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 51 lv~~~l~G~n~~i~aYG~tgSGKTyTm 77 (279)
++..+..|.+ ++..|+||||||..+
T Consensus 172 il~~i~~gkd--vIv~A~TGSGKTtqv 196 (675)
T PHA02653 172 IFEAWISRKP--VVLTGGTGVGKTSQV 196 (675)
T ss_pred HHHHHHhCCC--EEEECCCCCCchhHH
Confidence 3444556765 478899999999653
No 236
>KOG0730|consensus
Probab=52.18 E-value=3.8 Score=41.12 Aligned_cols=41 Identities=24% Similarity=0.111 Sum_probs=25.6
Q ss_pred ccchhhhhHHHhcCchhHHHHHHhhccchhhhhHHHHhhhc
Q psy7226 237 SLHYLEQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEENL 277 (279)
Q Consensus 237 SL~aL~~vi~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (279)
.+.||.+-|.+.-=...|=++..+..++--..+..++.|..
T Consensus 649 ~~~a~~e~i~a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~f 689 (693)
T KOG0730|consen 649 ALLALRESIEATEITWQHFEEALKAVRPSLTSELLEKYEDF 689 (693)
T ss_pred HHHHHHHhcccccccHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 45566666666666666666666666666666666666543
No 237
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=52.00 E-value=6.3 Score=37.88 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=19.3
Q ss_pred cchhhhhhhhcccCCCceEeehHHHHH
Q psy7226 57 NGINATLLAYGQTGGGKTYTVSAMIMK 83 (279)
Q Consensus 57 ~G~n~~i~aYG~tgSGKTyTm~Gii~r 83 (279)
.++|. +-.|++|+||||...++-+.
T Consensus 208 ~~~Nl--i~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 208 PNYNL--IELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred cCCcE--EEECCCCCCHHHHHHHHhHH
Confidence 45664 56799999999998876665
No 238
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=51.89 E-value=7 Score=40.38 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=20.0
Q ss_pred hhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
..++-||++|+|||+.+.|+..+++.
T Consensus 208 ~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 34456999999999998888765543
No 239
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=51.87 E-value=5.5 Score=40.61 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=26.2
Q ss_pred ceehhhhHHhHHhhh-cchhhhhhhhcccCCCceEeeh
Q psy7226 42 TIFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 42 ~vf~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
.||.-. ......++ .+.|-||+.-|.+|||||.+.-
T Consensus 74 HifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 110 (677)
T cd01383 74 HVYAIA-DTAYNEMMRDEVNQSIIISGESGAGKTETAK 110 (677)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEecCCCCCcchHHH
Confidence 355443 34444444 5899999999999999999965
No 240
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=51.85 E-value=5.4 Score=40.58 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=26.0
Q ss_pred ceehhhhHHhHHhhh-cchhhhhhhhcccCCCceEeeh
Q psy7226 42 TIFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 42 ~vf~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
.||.-+ ......++ .|.|-||+.-|.+|||||.+.-
T Consensus 68 HifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTes~K 104 (671)
T cd01381 68 HIFAIS-DNAYTNMQREKKNQCIIISGESGAGKTESTK 104 (671)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEEcCCCCCeehHHH
Confidence 355433 33344444 5899999999999999999965
No 241
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=51.55 E-value=3.5 Score=32.78 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=12.8
Q ss_pred hhhhhcccCCCceEee
Q psy7226 62 TLLAYGQTGGGKTYTV 77 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm 77 (279)
+|+.+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 3677899999999653
No 242
>KOG0926|consensus
Probab=51.44 E-value=4.7 Score=41.57 Aligned_cols=19 Identities=42% Similarity=0.692 Sum_probs=14.9
Q ss_pred hhhhhhhcccCCCceEeeh
Q psy7226 60 NATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~ 78 (279)
|-.++.+|+||||||+-+.
T Consensus 271 n~vvIIcGeTGsGKTTQvP 289 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQVP 289 (1172)
T ss_pred CCeEEEecCCCCCccccch
Confidence 4456667999999998764
No 243
>PF13173 AAA_14: AAA domain
Probab=51.21 E-value=2.8 Score=32.72 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=14.9
Q ss_pred hhhhhcccCCCceEeehHHH
Q psy7226 62 TLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gii 81 (279)
.++-+|+.|+|||+.|.-++
T Consensus 4 ~~~l~G~R~vGKTtll~~~~ 23 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLA 23 (128)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35678999999998755443
No 244
>CHL00181 cbbX CbbX; Provisional
Probab=51.13 E-value=3.7 Score=37.17 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.2
Q ss_pred hhhhcccCCCceEeeh
Q psy7226 63 LLAYGQTGGGKTYTVS 78 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~ 78 (279)
++-||++|+|||+...
T Consensus 62 ill~G~pGtGKT~lAr 77 (287)
T CHL00181 62 MSFTGSPGTGKTTVAL 77 (287)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5679999999997644
No 245
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=51.06 E-value=6.1 Score=39.89 Aligned_cols=25 Identities=44% Similarity=0.696 Sum_probs=18.9
Q ss_pred hHHhhhcchhhhhhhhcccCCCceEee
Q psy7226 51 LINHMFNGINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 51 lv~~~l~G~n~~i~aYG~tgSGKTyTm 77 (279)
.+..++.|.+ ++..+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4555677876 577789999999763
No 246
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.05 E-value=5.8 Score=38.96 Aligned_cols=15 Identities=47% Similarity=0.643 Sum_probs=12.2
Q ss_pred hhhcccCCCceEeeh
Q psy7226 64 LAYGQTGGGKTYTVS 78 (279)
Q Consensus 64 ~aYG~tgSGKTyTm~ 78 (279)
+-+|+||||||-..+
T Consensus 1 LL~g~TGsGKT~v~l 15 (505)
T TIGR00595 1 LLFGVTGSGKTEVYL 15 (505)
T ss_pred CccCCCCCCHHHHHH
Confidence 357999999998754
No 247
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=51.03 E-value=3.6 Score=34.63 Aligned_cols=13 Identities=38% Similarity=0.555 Sum_probs=10.6
Q ss_pred hhcccCCCceEee
Q psy7226 65 AYGQTGGGKTYTV 77 (279)
Q Consensus 65 aYG~tgSGKTyTm 77 (279)
--|++|||||+++
T Consensus 4 i~G~~GsGKSTl~ 16 (198)
T cd02023 4 IAGGSGSGKTTVA 16 (198)
T ss_pred EECCCCCCHHHHH
Confidence 3599999999765
No 248
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=51.03 E-value=9.5 Score=35.32 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=22.8
Q ss_pred CCCcceehhh-hHHhHHhhhcchhhhhhhhcccCCCceEe
Q psy7226 38 DSNETIFTEV-LVPLINHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 38 a~Q~~vf~~~-~~plv~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
.+..-+|+.- ...++..+..+. -|+-.|++|+|||..
T Consensus 43 ~d~~y~f~~~~~~~vl~~l~~~~--~ilL~G~pGtGKTtl 80 (327)
T TIGR01650 43 IDPAYLFDKATTKAICAGFAYDR--RVMVQGYHGTGKSTH 80 (327)
T ss_pred CCCCccCCHHHHHHHHHHHhcCC--cEEEEeCCCChHHHH
Confidence 3344566533 344444444443 478899999999954
No 249
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=50.73 E-value=3.6 Score=31.66 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=11.5
Q ss_pred hhhhcccCCCceEee
Q psy7226 63 LLAYGQTGGGKTYTV 77 (279)
Q Consensus 63 i~aYG~tgSGKTyTm 77 (279)
+.-.|++|||||.++
T Consensus 18 v~I~GpSGsGKSTLl 32 (107)
T cd00820 18 VLITGDSGIGKTELA 32 (107)
T ss_pred EEEEcCCCCCHHHHH
Confidence 345699999999654
No 250
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=50.32 E-value=7.9 Score=39.46 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=26.0
Q ss_pred ceehhhhHHhHHhhh-cchhhhhhhhcccCCCceEeeh
Q psy7226 42 TIFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 42 ~vf~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
.||.-+ ......++ .|.|-||+.-|.+|||||.+.-
T Consensus 70 HifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 106 (674)
T cd01384 70 HVFAIA-DAAYRAMINEGKSQSILVSGESGAGKTETTK 106 (674)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEECCCCCCchhHHH
Confidence 355443 33334444 5899999999999999999865
No 251
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=50.16 E-value=3.9 Score=33.94 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=12.1
Q ss_pred hhhhcccCCCceEee
Q psy7226 63 LLAYGQTGGGKTYTV 77 (279)
Q Consensus 63 i~aYG~tgSGKTyTm 77 (279)
|+.+|+.|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999543
No 252
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=50.10 E-value=3.6 Score=34.13 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=27.0
Q ss_pred cchhhhhhhhcccCCCceEeehHHHHHHHHHHHHHcCccchhhhHHHHhhhhh
Q psy7226 57 NGINATLLAYGQTGGGKTYTVSAMIMKTLQHVMQRCNKDDVYMSYLQLYSEKC 109 (279)
Q Consensus 57 ~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~~lf~~~~~~~v~vS~~EIy~E~v 109 (279)
..++..|+-+|.+||||+ ++.+++...-.+...--|.+.|-.+..|.+
T Consensus 19 a~~~~pVlI~GE~GtGK~-----~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~ 66 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKE-----LLARAIHNNSPRKNGPFISVNCAALPEELL 66 (168)
T ss_dssp TTSTS-EEEECSTTSSHH-----HHHHHHHHCSTTTTS-EEEEETTTS-HHHH
T ss_pred hCCCCCEEEEcCCCCcHH-----HHHHHHHHhhhcccCCeEEEehhhhhcchh
Confidence 477789999999999999 445555553333333333343334444444
No 253
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=49.82 E-value=4.1 Score=33.53 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=13.5
Q ss_pred hhhhcccCCCceEeehHH
Q psy7226 63 LLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gi 80 (279)
|+-.|++|||||..+..|
T Consensus 4 ~~i~G~sGsGKttl~~~l 21 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYA 21 (179)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 456799999999765433
No 254
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=49.57 E-value=3.9 Score=35.83 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=11.6
Q ss_pred hhhcccCCCceEeeh
Q psy7226 64 LAYGQTGGGKTYTVS 78 (279)
Q Consensus 64 ~aYG~tgSGKTyTm~ 78 (279)
.-.|++|||||+-|.
T Consensus 35 aI~GpSGSGKSTLLn 49 (226)
T COG1136 35 AIVGPSGSGKSTLLN 49 (226)
T ss_pred EEECCCCCCHHHHHH
Confidence 345999999997654
No 255
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=49.52 E-value=6.1 Score=37.06 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=14.3
Q ss_pred hhhhhhhhcccCCCceEee
Q psy7226 59 INATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 59 ~n~~i~aYG~tgSGKTyTm 77 (279)
.+-.+.-.|++|+|||...
T Consensus 77 ~r~il~L~GPPGsGKStla 95 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3455677899999999653
No 256
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=49.42 E-value=8.1 Score=39.51 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=25.8
Q ss_pred ceehhhhHHhHHhhh-cchhhhhhhhcccCCCceEeeh
Q psy7226 42 TIFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 42 ~vf~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
.||.-. ......++ .|.|-||+.-|.+|||||.|.-
T Consensus 76 Hiy~iA-~~Ay~~m~~~~~~QsIiisGESGAGKTet~K 112 (692)
T cd01385 76 HIFAIA-DVAYYNMLRKKVNQCIVISGESGSGKTESTN 112 (692)
T ss_pred CHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 355433 33333444 5889999999999999999965
No 257
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=49.05 E-value=6.9 Score=41.33 Aligned_cols=14 Identities=43% Similarity=0.831 Sum_probs=11.4
Q ss_pred ccCCCceEeehHHH
Q psy7226 68 QTGGGKTYTVSAMI 81 (279)
Q Consensus 68 ~tgSGKTyTm~Gii 81 (279)
+||||||||+.+.|
T Consensus 67 ~TGtGKT~~~~~~i 80 (986)
T PRK15483 67 ETGTGKTYVYTRLM 80 (986)
T ss_pred CCCCCHHHHHHHHH
Confidence 69999999876544
No 258
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=49.04 E-value=5.1 Score=40.93 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=26.6
Q ss_pred cceehhhhHHhHHhhh-cchhhhhhhhcccCCCceEeeh
Q psy7226 41 ETIFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 41 ~~vf~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
-.||.-. ......++ .+.|-||+.-|.+|||||.+.-
T Consensus 72 PHiyaiA-~~Ay~~m~~~~~~QsIiiSGESGAGKTes~K 109 (693)
T cd01377 72 PHIFAIA-DNAYRSMLQDRENQSILITGESGAGKTENTK 109 (693)
T ss_pred CCHHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHHHH
Confidence 3455543 34444444 5999999999999999999854
No 259
>PHA02624 large T antigen; Provisional
Probab=48.99 E-value=6.1 Score=39.63 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=22.8
Q ss_pred HHhHHhhhcchhh--hhhhhcccCCCceEeehHH
Q psy7226 49 VPLINHMFNGINA--TLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 49 ~plv~~~l~G~n~--~i~aYG~tgSGKTyTm~Gi 80 (279)
..++..++.|..- |++-||+.|||||+-..+|
T Consensus 418 ~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sL 451 (647)
T PHA02624 418 YDILKLIVENVPKRRYWLFKGPVNSGKTTLAAAL 451 (647)
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3445566666554 8999999999999765444
No 260
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=48.94 E-value=9.8 Score=38.81 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=26.3
Q ss_pred ceehhhhHHhHHhhh-cchhhhhhhhcccCCCceEeeh
Q psy7226 42 TIFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 42 ~vf~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
.||.-+ ......++ .|.|-||+.-|.+|||||.+.-
T Consensus 69 HifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k 105 (677)
T cd01387 69 HLFAIA-NLAFAKMLDAKQNQCVIISGESGSGKTEATK 105 (677)
T ss_pred CHHHHH-HHHHHHHHhcCCCceEEEEcCCCCCeehHHH
Confidence 355443 33344444 5899999999999999999965
No 261
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=48.90 E-value=7.5 Score=39.64 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=26.9
Q ss_pred cceehhhhHHhHHhhh-cchhhhhhhhcccCCCceEeeh
Q psy7226 41 ETIFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 41 ~~vf~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
-.+|.-+ ......++ .|.|-||+.-|.+|||||.+.-
T Consensus 67 PHifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k 104 (679)
T cd00124 67 PHVFAIA-DRAYRNMLRDRRNQSIIISGESGAGKTENTK 104 (679)
T ss_pred CCHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 3455443 44444555 4899999999999999999864
No 262
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=48.80 E-value=7 Score=38.98 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=19.5
Q ss_pred HhHHhhhcchhhhhhhhcccCCCceEee
Q psy7226 50 PLINHMFNGINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 50 plv~~~l~G~n~~i~aYG~tgSGKTyTm 77 (279)
..|..+++|.|+ ++..+||||||.+.
T Consensus 38 ~~ip~~l~G~Dv--i~~ApTGSGKTlaf 63 (572)
T PRK04537 38 LTLPVALPGGDV--AGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHHhCCCCE--EEEcCCCCcHHHHH
Confidence 345667889884 55679999999663
No 263
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=48.78 E-value=5.6 Score=38.82 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=17.0
Q ss_pred hhhhhhcccCCCceEeehHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
..+.-.|++|+|||+|+.-|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 3566779999999999775543
No 264
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=48.72 E-value=4.1 Score=34.96 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=14.8
Q ss_pred hhhhhcccCCCceEeehHH
Q psy7226 62 TLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gi 80 (279)
.|+..|.||||||.+.-.|
T Consensus 2 ~IlllG~tGsGKSs~~N~i 20 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSI 20 (212)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3677899999999765555
No 265
>KOG0354|consensus
Probab=48.71 E-value=9.6 Score=39.00 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=30.3
Q ss_pred ecccCCCCCCcceehhh------hHHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 31 DNIFGPNDSNETIFTEV------LVPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 31 D~Vf~~~a~Q~~vf~~~------~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
+.-+++++-|..+|-.- -..++..++ |.|+.|.+ |||+|||+...
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~l--PTG~GKTfIAa 94 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIAL--PTGSGKTFIAA 94 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEe--ecCCCccchHH
Confidence 44455666665555433 245778888 99975554 99999998754
No 266
>PRK14531 adenylate kinase; Provisional
Probab=48.68 E-value=4.2 Score=33.88 Aligned_cols=14 Identities=43% Similarity=0.622 Sum_probs=12.0
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
|+.+|+.|||||+.
T Consensus 5 i~i~G~pGsGKsT~ 18 (183)
T PRK14531 5 LLFLGPPGAGKGTQ 18 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 66789999999965
No 267
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=48.50 E-value=9 Score=39.05 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=26.1
Q ss_pred ceehhhhHHhHHhhh-cchhhhhhhhcccCCCceEeeh
Q psy7226 42 TIFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 42 ~vf~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
.||.-+ ......++ .|.|-||+.-|.+|||||.+.-
T Consensus 68 HifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 104 (674)
T cd01378 68 HIYALA-DNAYRSMKSENENQCVIISGESGAGKTEAAK 104 (674)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEEcCCCCCcchHHH
Confidence 355443 33334444 5899999999999999999964
No 268
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=48.49 E-value=3.8 Score=40.30 Aligned_cols=17 Identities=41% Similarity=0.673 Sum_probs=13.9
Q ss_pred hhhhhcccCCCceEeeh
Q psy7226 62 TLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~ 78 (279)
.|+-||++|+|||+..-
T Consensus 218 GILLyGPPGTGKT~LAK 234 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAK 234 (512)
T ss_pred ceEEECCCCCcHHHHHH
Confidence 47889999999996543
No 269
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=48.48 E-value=5.9 Score=40.07 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=19.7
Q ss_pred hhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
.=++..|.||+|||..+..++...+.
T Consensus 177 ~H~lv~G~TGsGKT~l~~~l~~q~i~ 202 (634)
T TIGR03743 177 GHTLVLGTTGVGKTRLAELLITQDIR 202 (634)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34567799999999887667666665
No 270
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=48.30 E-value=9.1 Score=41.77 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=23.5
Q ss_pred cceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHHHH
Q psy7226 41 ETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQH 87 (279)
Q Consensus 41 ~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~~ 87 (279)
-.||+.. ..++ ..+.+.. .++..|.||||||. .+|..+-+
T Consensus 66 LPi~~~~-~~Il-~~l~~~~-vvii~g~TGSGKTT----qlPq~lle 105 (1283)
T TIGR01967 66 LPVSAKR-EDIA-EAIAENQ-VVIIAGETGSGKTT----QLPKICLE 105 (1283)
T ss_pred CCHHHHH-HHHH-HHHHhCc-eEEEeCCCCCCcHH----HHHHHHHH
Confidence 4455443 4444 3445544 45556999999997 44555443
No 271
>KOG0161|consensus
Probab=48.27 E-value=8.7 Score=43.43 Aligned_cols=30 Identities=30% Similarity=0.234 Sum_probs=24.0
Q ss_pred EEeecccccCceeeeeeehhhhhhhhhccc
Q psy7226 183 VTKMNAQSSRSHTICTIYLGAMAKLHLVDL 212 (279)
Q Consensus 183 ~t~~n~~SSRSH~i~~i~v~~~s~l~~VDL 212 (279)
.|..|..|||-|-++.|+....|+|.-.|+
T Consensus 227 ~tvrn~NssRFgkfirI~F~~~G~i~~a~I 256 (1930)
T KOG0161|consen 227 KTVRNDNSSRFGKFIRIHFDATGKIAGADI 256 (1930)
T ss_pred hhhcCCCCcccceeEEEecCCCCccchhhH
Confidence 466788999999999999987777665555
No 272
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=48.14 E-value=8.2 Score=39.63 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=25.5
Q ss_pred eehhhhHHhHHhhh-cchhhhhhhhcccCCCceEeeh
Q psy7226 43 IFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 43 vf~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
||.-. ......++ .|.|-||+.-|.+|||||.+.-
T Consensus 74 ifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTes~K 109 (717)
T cd01382 74 VFAIA-DKAYRDMKVLKMSQSIIVSGESGAGKTENTK 109 (717)
T ss_pred HHHHH-HHHHHHHHhcCCCCeEEEecCCCCChhHHHH
Confidence 45433 33333443 5899999999999999999965
No 273
>KOG2721|consensus
Probab=48.07 E-value=10 Score=32.78 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=40.0
Q ss_pred cceeEEEEeeceeEe-eecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccC
Q psy7226 15 QQTKIWLFFDHQVFI-FDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTG 70 (279)
Q Consensus 15 ~~~~~~~~~~~~~f~-FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tg 70 (279)
...=+.+++|++.|. |.++.+-+-.+++---.++..+-..++.-++-.|||||++.
T Consensus 14 p~~~iVvRIDGr~FhrFs~~h~FeKPNDe~aLnLMnscA~~Vl~ef~DIv~AyG~SD 70 (260)
T KOG2721|consen 14 PPCWIVVRIDGRDFHRFSKVHEFEKPNDETALNLMNSCASAVLEEFPDIVFAYGYSD 70 (260)
T ss_pred cceEEEEEEcCcchhhhhhhhcccCCChHHHHHHHHHHHHHHHHhccceEEEeccCc
Confidence 344477888888764 88887766666554444445555567889999999999976
No 274
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=47.84 E-value=5.2 Score=35.92 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=15.8
Q ss_pred hhhhhhcccCCCceEeehHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii 81 (279)
.+|+..|++|+|||.|+.-+.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 345555999999999976554
No 275
>CHL00195 ycf46 Ycf46; Provisional
Probab=47.78 E-value=3.7 Score=40.14 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=14.2
Q ss_pred hhhhhhcccCCCceEee
Q psy7226 61 ATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm 77 (279)
-.|+-||+.|+|||.+.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 34899999999999654
No 276
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=47.75 E-value=4 Score=41.93 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=17.9
Q ss_pred cchhhhhhhhcccCCCceEeehHH
Q psy7226 57 NGINATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 57 ~G~n~~i~aYG~tgSGKTyTm~Gi 80 (279)
.+.-..++-||++|+|||+++..+
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~aI 72 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARII 72 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHHHH
Confidence 344456788999999999776544
No 277
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=47.69 E-value=6 Score=40.44 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=25.6
Q ss_pred eehhhhHHhHHhhh-cchhhhhhhhcccCCCceEeeh
Q psy7226 43 IFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 43 vf~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
||.-+ ......++ .|.|-||+.-|.+|||||.+.-
T Consensus 69 ifaiA-~~Ay~~m~~~~~~QsIiiSGESGaGKTes~K 104 (691)
T cd01380 69 IFAIA-EEAYKQMTRDEKNQSIIVSGESGAGKTVSAK 104 (691)
T ss_pred HHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHHHH
Confidence 55443 33333444 6999999999999999999864
No 278
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=47.67 E-value=4.4 Score=37.67 Aligned_cols=15 Identities=27% Similarity=0.508 Sum_probs=12.1
Q ss_pred hhhcccCCCceEeeh
Q psy7226 64 LAYGQTGGGKTYTVS 78 (279)
Q Consensus 64 ~aYG~tgSGKTyTm~ 78 (279)
.-.|++|+|||++|-
T Consensus 33 vllGPSGcGKSTlLr 47 (338)
T COG3839 33 VLLGPSGCGKSTLLR 47 (338)
T ss_pred EEECCCCCCHHHHHH
Confidence 345999999998864
No 279
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=47.52 E-value=3.6 Score=40.43 Aligned_cols=65 Identities=18% Similarity=0.460 Sum_probs=42.5
Q ss_pred ceeEeeecccCCCCCCcceehhhhHHhHH--hhhcchhhhhhhhcccCCCceEeehHHHHHHHHHHHHHcCccchhhhHH
Q psy7226 25 HQVFIFDNIFGPNDSNETIFTEVLVPLIN--HMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQHVMQRCNKDDVYMSYL 102 (279)
Q Consensus 25 ~~~f~FD~Vf~~~a~Q~~vf~~~~~plv~--~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~~lf~~~~~~~v~vS~~ 102 (279)
...|+||.+.+.... ...++. .-+.+.+++|+-+|.||+||- ++.+.+..+-.+...--|.+-|-
T Consensus 239 ~a~y~f~~Iig~S~~--------m~~~~~~akr~A~tdstVLi~GESGTGKE-----lfA~~IH~~S~R~~~PFIaiNCa 305 (560)
T COG3829 239 KAKYTFDDIIGESPA--------MLRVLELAKRIAKTDSTVLILGESGTGKE-----LFARAIHNLSPRANGPFIAINCA 305 (560)
T ss_pred ccccchhhhccCCHH--------HHHHHHHHHhhcCCCCcEEEecCCCccHH-----HHHHHHHhcCcccCCCeEEEecc
Confidence 446888888876533 222222 335789999999999999997 66666666665555433333333
No 280
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=47.49 E-value=6.1 Score=28.03 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=13.8
Q ss_pred hhhcccCCCceEeehHHHHH
Q psy7226 64 LAYGQTGGGKTYTVSAMIMK 83 (279)
Q Consensus 64 ~aYG~tgSGKTyTm~Gii~r 83 (279)
+.+|..|+|||.+...+...
T Consensus 3 ~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 3 VVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 44577899999776555443
No 281
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=47.45 E-value=6.1 Score=40.59 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=13.7
Q ss_pred hhhhhcccCCCceEeeh
Q psy7226 62 TLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~ 78 (279)
.|+-||++|+|||+.+.
T Consensus 489 giLL~GppGtGKT~lak 505 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLAK 505 (733)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46789999999996543
No 282
>KOG0340|consensus
Probab=47.28 E-value=9.3 Score=35.81 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=21.9
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEee
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm 77 (279)
..+|..+++|.+| +.+..||||||...
T Consensus 35 ~~cIpkILeGrdc--ig~AkTGsGKT~AF 61 (442)
T KOG0340|consen 35 QACIPKILEGRDC--IGCAKTGSGKTAAF 61 (442)
T ss_pred hhhhHHHhccccc--ccccccCCCcchhh
Confidence 4567788999997 56779999999874
No 283
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=47.17 E-value=4.6 Score=34.75 Aligned_cols=16 Identities=31% Similarity=0.644 Sum_probs=12.4
Q ss_pred hhcccCCCceEeehHH
Q psy7226 65 AYGQTGGGKTYTVSAM 80 (279)
Q Consensus 65 aYG~tgSGKTyTm~Gi 80 (279)
-.|+.|||||.+|.-|
T Consensus 30 ivGpNGaGKSTll~~i 45 (212)
T cd03274 30 IVGPNGSGKSNVIDSM 45 (212)
T ss_pred EECCCCCCHHHHHHHH
Confidence 4599999999776543
No 284
>PRK06217 hypothetical protein; Validated
Probab=47.05 E-value=4.6 Score=33.61 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=11.3
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
|+-.|.+|||||+.
T Consensus 4 I~i~G~~GsGKSTl 17 (183)
T PRK06217 4 IHITGASGSGTTTL 17 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 56679999999943
No 285
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=47.00 E-value=3.8 Score=37.98 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=28.1
Q ss_pred CCCcccccchhhhccccccceeEEEecccceeeEEEe
Q psy7226 149 GNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTK 185 (279)
Q Consensus 149 ~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~ 185 (279)
.+-+.+.++-.+.=+++.++.=+++.|.. ++...-+
T Consensus 226 ~~vIEiAPlAyMRGRTL~dAfVIlDEaQN-tT~~QmK 261 (348)
T COG1702 226 RGVIEIAPLAYMRGRTLNDAFVILDEAQN-TTVGQMK 261 (348)
T ss_pred cCcEEecchhhhhcCCCCCeEEEEecccc-cchhhhc
Confidence 45567888889999999999999998866 6655444
No 286
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=46.75 E-value=6.1 Score=38.09 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=17.5
Q ss_pred hhhhhhhcccCCCceEeehHHH
Q psy7226 60 NATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~Gii 81 (279)
...|+-+|.+|+|||+|..-+.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4567788999999999976554
No 287
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=46.62 E-value=7.2 Score=35.30 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=21.2
Q ss_pred CCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 37 NDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 37 ~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
...|.++-+. +.+.+-+|.++ +.=.+||+|||.+..
T Consensus 10 r~~Q~~~m~~----v~~~~~~~~~~--~~eapTGtGKTl~~L 45 (289)
T smart00488 10 YPIQYEFMEE----LKRVLDRGKIG--ILESPTGTGKTLSLL 45 (289)
T ss_pred CHHHHHHHHH----HHHHHHcCCcE--EEECCCCcchhHHHH
Confidence 4445444333 33444466554 455699999998744
No 288
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=46.62 E-value=7.2 Score=35.30 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=21.2
Q ss_pred CCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 37 NDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 37 ~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
...|.++-+. +.+.+-+|.++ +.=.+||+|||.+..
T Consensus 10 r~~Q~~~m~~----v~~~~~~~~~~--~~eapTGtGKTl~~L 45 (289)
T smart00489 10 YPIQYEFMEE----LKRVLDRGKIG--ILESPTGTGKTLSLL 45 (289)
T ss_pred CHHHHHHHHH----HHHHHHcCCcE--EEECCCCcchhHHHH
Confidence 4445444333 33444466554 455699999998744
No 289
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=46.56 E-value=6.5 Score=39.20 Aligned_cols=25 Identities=44% Similarity=0.646 Sum_probs=16.9
Q ss_pred hhhhcccCCCceEeehHHHHHHHHHHHHH
Q psy7226 63 LLAYGQTGGGKTYTVSAMIMKTLQHVMQR 91 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~r~l~~lf~~ 91 (279)
++.+|.||||||.. |+..+..+..+
T Consensus 179 ~li~G~tGsGKs~~----i~~ll~~~~~~ 203 (566)
T TIGR02759 179 ILIHGTTGSGKSVA----IRKLLRWIRQR 203 (566)
T ss_pred eEEEcCCCCCHHHH----HHHHHHHHHhc
Confidence 57889999999954 34445554433
No 290
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=46.49 E-value=4.8 Score=36.31 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=13.5
Q ss_pred hhhhhcccCCCceEeeh
Q psy7226 62 TLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~ 78 (279)
-++-+|++|+|||+...
T Consensus 60 ~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVAL 76 (284)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 36788999999996543
No 291
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=46.37 E-value=6.7 Score=40.08 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=26.2
Q ss_pred hhhhcccCCCceEeehHHHHHHHHHHHHHcCc---cchhhhHHHH-hhh
Q psy7226 63 LLAYGQTGGGKTYTVSAMIMKTLQHVMQRCNK---DDVYMSYLQL-YSE 107 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~r~l~~lf~~~~~---~~v~vS~~EI-y~E 107 (279)
++..|.||||||..|..|+..+. .+-.. +.....|++- |+.
T Consensus 188 ~li~GttGSGKS~~i~~LL~~ir----~RGdrAIIyD~~GeFv~~FY~p 232 (732)
T PRK13700 188 FCLHGTVGAGKSEVIRRLANYAR----QRGDMVVIYDRSGEFVKSYYDP 232 (732)
T ss_pred eEEeCCCCCCHHHHHHHHHHHHH----HcCCeEEEEeCCCchHHHhcCC
Confidence 36679999999997777666432 22222 5666677765 443
No 292
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=46.33 E-value=7.6 Score=40.03 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=19.9
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEe
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
...+..+++|.|+.+.| +||||||..
T Consensus 42 ~~ai~~il~G~nvvv~a--pTGSGKTla 67 (742)
T TIGR03817 42 ARAAELAHAGRHVVVAT--GTASGKSLA 67 (742)
T ss_pred HHHHHHHHCCCCEEEEC--CCCCcHHHH
Confidence 44556778999976655 899999955
No 293
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=46.15 E-value=5.4 Score=37.04 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=22.3
Q ss_pred hHHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 48 LVPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 48 ~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
..-++-.+++..-.-++-.|.+|+|||..+-
T Consensus 13 ~~al~~~~~~~~~g~vli~G~~G~gKttl~r 43 (337)
T TIGR02030 13 KLALLLNVIDPKIGGVMVMGDRGTGKSTAVR 43 (337)
T ss_pred HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHH
Confidence 4555666677555567888999999996543
No 294
>PRK06696 uridine kinase; Validated
Probab=45.82 E-value=7.3 Score=33.57 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=19.2
Q ss_pred hHHhHHhhh---cchhhhhhhhcccCCCceEee
Q psy7226 48 LVPLINHMF---NGINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 48 ~~plv~~~l---~G~n~~i~aYG~tgSGKTyTm 77 (279)
+..+.+.++ .+....|.-.|.+|||||+..
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 344444444 344455667799999999654
No 295
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=45.80 E-value=5.9 Score=37.09 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=18.8
Q ss_pred cchhhhhhhhcccCCCceEee
Q psy7226 57 NGINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 57 ~G~n~~i~aYG~tgSGKTyTm 77 (279)
.|..-+||..|++|+|||.-+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
Confidence 599999999999999999644
No 296
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=45.74 E-value=7.7 Score=33.30 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=19.6
Q ss_pred hHHhhhc-ch--hhhhhhhcccCCCceEeehHH
Q psy7226 51 LINHMFN-GI--NATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 51 lv~~~l~-G~--n~~i~aYG~tgSGKTyTm~Gi 80 (279)
-+|.++. |. ...++-+|.+|+|||.-+..+
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~ 36 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQF 36 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3556664 32 445666899999999755444
No 297
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=45.62 E-value=8.8 Score=38.51 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=19.0
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEe
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
...+..++.|.++.+ ..+||+|||.+
T Consensus 31 ~~ai~~il~g~dvlv--~apTGsGKTl~ 56 (607)
T PRK11057 31 QEIIDAVLSGRDCLV--VMPTGGGKSLC 56 (607)
T ss_pred HHHHHHHHcCCCEEE--EcCCCchHHHH
Confidence 445566778988754 46999999954
No 298
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=45.60 E-value=9.3 Score=35.35 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=24.8
Q ss_pred hhhHHhHHhhhc--chh--hhhhhhcccCCCceEeeh
Q psy7226 46 EVLVPLINHMFN--GIN--ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 46 ~~~~plv~~~l~--G~n--~~i~aYG~tgSGKTyTm~ 78 (279)
.+..+-+|.++. |.. ..+.-||++|||||..+.
T Consensus 37 sTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal 73 (325)
T cd00983 37 PTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLAL 73 (325)
T ss_pred cCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 446788899887 443 456789999999996554
No 299
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=45.47 E-value=9.4 Score=39.99 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=27.2
Q ss_pred hHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 48 LVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 48 ~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
+..++.-+..+....++-+|++|+|||+.+.|+..++..
T Consensus 182 i~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 182 IRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 455554444444445566899999999999888777654
No 300
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=45.36 E-value=6.7 Score=38.82 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=18.0
Q ss_pred hhhhhcccCCCceEeehHHHHHHH
Q psy7226 62 TLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
.|.-.|++|+|||+++..|..+..
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 444559999999999877666543
No 301
>PTZ00301 uridine kinase; Provisional
Probab=45.30 E-value=6.1 Score=34.09 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=12.3
Q ss_pred hcccCCCceEeehHHHH
Q psy7226 66 YGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 66 YG~tgSGKTyTm~Gii~ 82 (279)
-|++|||||+....|..
T Consensus 9 aG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 9 SGASGSGKSSLSTNIVS 25 (210)
T ss_pred ECCCcCCHHHHHHHHHH
Confidence 39999999976544433
No 302
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=45.19 E-value=3.7 Score=36.89 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=17.2
Q ss_pred cchhhhhhhhcccCCCceEe
Q psy7226 57 NGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 57 ~G~n~~i~aYG~tgSGKTyT 76 (279)
.|+...|+..|++|+|||..
T Consensus 1 ~g~~f~I~vvG~sg~GKSTl 20 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTF 20 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHH
Confidence 37788899999999999954
No 303
>PRK08233 hypothetical protein; Provisional
Probab=45.03 E-value=5.2 Score=32.76 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=11.2
Q ss_pred hhhcccCCCceEeeh
Q psy7226 64 LAYGQTGGGKTYTVS 78 (279)
Q Consensus 64 ~aYG~tgSGKTyTm~ 78 (279)
.--|++|||||+...
T Consensus 7 ~I~G~~GsGKtTla~ 21 (182)
T PRK08233 7 TIAAVSGGGKTTLTE 21 (182)
T ss_pred EEECCCCCCHHHHHH
Confidence 345999999996543
No 304
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=45.03 E-value=5.7 Score=34.82 Aligned_cols=15 Identities=40% Similarity=0.523 Sum_probs=12.9
Q ss_pred hhhcccCCCceEeeh
Q psy7226 64 LAYGQTGGGKTYTVS 78 (279)
Q Consensus 64 ~aYG~tgSGKTyTm~ 78 (279)
..+|++|+|||.|+-
T Consensus 36 ~~~GpagtGKtetik 50 (231)
T PF12774_consen 36 ALSGPAGTGKTETIK 50 (231)
T ss_dssp EEESSTTSSHHHHHH
T ss_pred CCcCCCCCCchhHHH
Confidence 468999999999964
No 305
>PHA01747 putative ATP-dependent protease
Probab=44.88 E-value=5 Score=37.84 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=22.4
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEee
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm 77 (279)
-|+++.-..+.|.-++=.|+.|+||||+-
T Consensus 179 iPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 179 LPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 46666445677777888999999999873
No 306
>PRK01172 ski2-like helicase; Provisional
Probab=44.84 E-value=8.4 Score=39.06 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=18.7
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEe
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
...+..+.+|.| ++..++||||||..
T Consensus 28 ~~ai~~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 28 RMAIEQLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHHHHHhcCCc--EEEECCCCchHHHH
Confidence 344555677877 46668999999965
No 307
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=44.83 E-value=8.1 Score=35.02 Aligned_cols=27 Identities=15% Similarity=0.437 Sum_probs=20.4
Q ss_pred hhhhcccCCCceEeeh---------------HHHHHHHHHHH
Q psy7226 63 LLAYGQTGGGKTYTVS---------------AMIMKTLQHVM 89 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~---------------Gii~r~l~~lf 89 (279)
|+.-|.+|||||..|. .++|..++.+-
T Consensus 4 vIiTGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 4 VIITGLSGAGKSTALRALEDLGYYCVDNLPPSLLPQLIELLA 45 (284)
T ss_pred EEEeCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHHHHHHHHH
Confidence 4455999999999875 67777776655
No 308
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=44.79 E-value=8 Score=31.58 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=14.3
Q ss_pred hhcccCCCceEeehHHHHHH
Q psy7226 65 AYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 65 aYG~tgSGKTyTm~Gii~r~ 84 (279)
-.|.+|||||+.+.-++...
T Consensus 4 i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 4 IVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 34999999997766555533
No 309
>PRK10865 protein disaggregation chaperone; Provisional
Probab=44.67 E-value=9.3 Score=40.06 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=27.2
Q ss_pred hHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 48 LVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 48 ~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
+..+++-+.......++-+|++|+|||+.+.|+..++..
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 444554333444445677899999999999888877654
No 310
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=44.62 E-value=7.8 Score=33.77 Aligned_cols=26 Identities=31% Similarity=0.630 Sum_probs=18.6
Q ss_pred HhHHhhhc-ch--hhhhhhhcccCCCceE
Q psy7226 50 PLINHMFN-GI--NATLLAYGQTGGGKTY 75 (279)
Q Consensus 50 plv~~~l~-G~--n~~i~aYG~tgSGKTy 75 (279)
+-+|.++. |. ..+++-+|++|||||.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 44566664 33 4667889999999994
No 311
>CHL00176 ftsH cell division protein; Validated
Probab=44.48 E-value=7.8 Score=39.21 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.5
Q ss_pred hhhhhcccCCCceEeeh
Q psy7226 62 TLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~ 78 (279)
.|+-||++|+|||+.+.
T Consensus 218 gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAK 234 (638)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47889999999997754
No 312
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=44.31 E-value=6 Score=40.67 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=20.0
Q ss_pred hhhhhhhcccCCCceEeehHHHHHHH
Q psy7226 60 NATLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
|.-++..|.||||||++|.-|+.+..
T Consensus 434 ~~n~~I~G~tGsGKS~~~~~l~~~~~ 459 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLLNFLLAQMQ 459 (785)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhh
Confidence 55567789999999999876665544
No 313
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=44.30 E-value=5.5 Score=32.80 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=12.5
Q ss_pred hhhhcccCCCceEeeh
Q psy7226 63 LLAYGQTGGGKTYTVS 78 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~ 78 (279)
|+..|+.|||||+.+.
T Consensus 6 i~i~G~~GsGKsTl~~ 21 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCE 21 (188)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4567999999997643
No 314
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=44.28 E-value=11 Score=38.52 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=16.2
Q ss_pred cchhhhhhhhcccCCCceEeeh
Q psy7226 57 NGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 57 ~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
.+...-++..|+||||||....
T Consensus 279 ~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 279 SPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred ccCCceEEEECCCCCcHHHHHH
Confidence 3444457888999999997654
No 315
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=44.13 E-value=7.4 Score=31.92 Aligned_cols=13 Identities=38% Similarity=0.636 Sum_probs=10.9
Q ss_pred hcccCCCceEeeh
Q psy7226 66 YGQTGGGKTYTVS 78 (279)
Q Consensus 66 YG~tgSGKTyTm~ 78 (279)
.|.+|||||+.+.
T Consensus 1 ~G~sGsGKSTla~ 13 (163)
T PRK11545 1 MGVSGSGKSAVAS 13 (163)
T ss_pred CCCCCCcHHHHHH
Confidence 4999999997765
No 316
>KOG0742|consensus
Probab=44.13 E-value=8 Score=37.10 Aligned_cols=14 Identities=50% Similarity=0.878 Sum_probs=12.2
Q ss_pred hhhhhcccCCCceE
Q psy7226 62 TLLAYGQTGGGKTY 75 (279)
Q Consensus 62 ~i~aYG~tgSGKTy 75 (279)
-|+-||+.|+|||-
T Consensus 386 NilfyGPPGTGKTm 399 (630)
T KOG0742|consen 386 NILFYGPPGTGKTM 399 (630)
T ss_pred heeeeCCCCCCchH
Confidence 47899999999984
No 317
>PRK06762 hypothetical protein; Provisional
Probab=44.07 E-value=5.1 Score=32.52 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=11.1
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
|+-.|..|||||+.
T Consensus 5 i~i~G~~GsGKST~ 18 (166)
T PRK06762 5 IIIRGNSGSGKTTI 18 (166)
T ss_pred EEEECCCCCCHHHH
Confidence 45579999999953
No 318
>PRK14974 cell division protein FtsY; Provisional
Probab=43.86 E-value=7.1 Score=36.28 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=17.8
Q ss_pred hhhhhhhcccCCCceEeehHHHH
Q psy7226 60 NATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
...|+-.|++|+|||.|+.-+..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35677889999999998765543
No 319
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=43.82 E-value=7.4 Score=40.13 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=20.0
Q ss_pred HhHHhhhcchhhhhhhhcccCCCceEeehHH
Q psy7226 50 PLINHMFNGINATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 50 plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gi 80 (279)
..+..++.+.. .++-.|..|+||||+|..+
T Consensus 359 ~Av~~i~~s~~-~~il~G~aGTGKTtll~~i 388 (744)
T TIGR02768 359 EAVRHVTGSGD-IAVVVGRAGTGKSTMLKAA 388 (744)
T ss_pred HHHHHHhcCCC-EEEEEecCCCCHHHHHHHH
Confidence 34555565433 3456699999999987654
No 320
>CHL00095 clpC Clp protease ATP binding subunit
Probab=43.70 E-value=11 Score=39.28 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=25.0
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHH
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
..+++-+.......++-||++|.|||..+.|+..+..
T Consensus 189 ~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 189 ERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred HHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3344333332333567899999999999888877664
No 321
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=43.70 E-value=8.9 Score=35.72 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=19.2
Q ss_pred HHhhhcchhhhhhhhcccCCCceEee
Q psy7226 52 INHMFNGINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 52 v~~~l~G~n~~i~aYG~tgSGKTyTm 77 (279)
++.+.+|.+..++...+||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 34556777666677799999999753
No 322
>PRK09401 reverse gyrase; Reviewed
Probab=43.67 E-value=11 Score=41.00 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=18.6
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceE
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTY 75 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTy 75 (279)
...+..++.|.|..+. .+||||||.
T Consensus 86 ~~~i~~il~g~dv~i~--ApTGsGKT~ 110 (1176)
T PRK09401 86 RTWAKRLLLGESFAII--APTGVGKTT 110 (1176)
T ss_pred HHHHHHHHCCCcEEEE--cCCCCCHHH
Confidence 3455667889887555 599999994
No 323
>PRK14532 adenylate kinase; Provisional
Probab=43.45 E-value=5.7 Score=33.00 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=12.4
Q ss_pred hhhhcccCCCceEee
Q psy7226 63 LLAYGQTGGGKTYTV 77 (279)
Q Consensus 63 i~aYG~tgSGKTyTm 77 (279)
|+..|+.|||||+..
T Consensus 3 i~~~G~pGsGKsT~a 17 (188)
T PRK14532 3 LILFGPPAAGKGTQA 17 (188)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999653
No 324
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=43.15 E-value=3 Score=36.70 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=13.7
Q ss_pred hhhhhhcccCCCceEeeh
Q psy7226 61 ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~ 78 (279)
-.+..+|++|||||+.+-
T Consensus 31 e~~~i~G~nGsGKSTL~~ 48 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLK 48 (235)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 355678999999996543
No 325
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=43.04 E-value=5 Score=34.75 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=13.6
Q ss_pred chhhhhhhhcccCCCceEee
Q psy7226 58 GINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 58 G~n~~i~aYG~tgSGKTyTm 77 (279)
+....|.-.|++|||||+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 33334445699999999654
No 326
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=42.85 E-value=8.4 Score=41.85 Aligned_cols=19 Identities=37% Similarity=0.728 Sum_probs=15.2
Q ss_pred ccCCCceEeehHHHHHHHH
Q psy7226 68 QTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 68 ~tgSGKTyTm~Gii~r~l~ 86 (279)
..|||||||+.+++.|.+-
T Consensus 25 SAGTGKTyTIa~lyLrLlL 43 (1181)
T PRK10876 25 SAGTGKTFTIAALYLRLLL 43 (1181)
T ss_pred CCCCcHHHHHHHHHHHHHc
Confidence 3699999999888776654
No 327
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=42.84 E-value=8.5 Score=31.86 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=18.1
Q ss_pred hhhhcccCCCceEeehHHHHHHH
Q psy7226 63 LLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
.+-+|++|+|||+.+.-++...+
T Consensus 35 ~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 35 TLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp EEEEECSTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 56679999999998876666555
No 328
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=42.83 E-value=9 Score=37.84 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=25.8
Q ss_pred EeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEe
Q psy7226 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 28 f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
-.|+.+++.+. .+..+...+.......|+-||++|+|||+.
T Consensus 62 ~~f~~iiGqs~--------~i~~l~~al~~~~~~~vLi~Ge~GtGKt~l 102 (531)
T TIGR02902 62 KSFDEIIGQEE--------GIKALKAALCGPNPQHVIIYGPPGVGKTAA 102 (531)
T ss_pred CCHHHeeCcHH--------HHHHHHHHHhCCCCceEEEECCCCCCHHHH
Confidence 45666665442 234444444555556678899999999954
No 329
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=42.59 E-value=7 Score=32.86 Aligned_cols=12 Identities=42% Similarity=0.584 Sum_probs=10.1
Q ss_pred hhcccCCCceEe
Q psy7226 65 AYGQTGGGKTYT 76 (279)
Q Consensus 65 aYG~tgSGKTyT 76 (279)
-.|++|||||+.
T Consensus 4 I~G~sgSGKTTl 15 (194)
T PF00485_consen 4 IAGPSGSGKTTL 15 (194)
T ss_dssp EEESTTSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 459999999965
No 330
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=42.46 E-value=8 Score=36.99 Aligned_cols=21 Identities=43% Similarity=0.526 Sum_probs=16.4
Q ss_pred hhhhhhcccCCCceEeehHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii 81 (279)
..|+-.|++|+|||+|+.-|.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 456778999999999876443
No 331
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=42.33 E-value=3.4 Score=40.71 Aligned_cols=45 Identities=27% Similarity=0.323 Sum_probs=27.6
Q ss_pred eeEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEe
Q psy7226 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 26 ~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
..+.||.+.+.+.. ...+ ...+.. +...+..|+-+|.+||||++.
T Consensus 191 ~~~~~~~liG~s~~----~~~~-~~~~~~-~a~~~~pvli~Ge~GtGK~~l 235 (534)
T TIGR01817 191 RSGKEDGIIGKSPA----MRQV-VDQARV-VARSNSTVLLRGESGTGKELI 235 (534)
T ss_pred ccCccCceEECCHH----HHHH-HHHHHH-HhCcCCCEEEECCCCccHHHH
Confidence 34678888765543 2222 122222 235677889999999999943
No 332
>PRK09354 recA recombinase A; Provisional
Probab=42.25 E-value=8.9 Score=35.85 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=24.7
Q ss_pred hhhHHhHHhhhc-c-h--hhhhhhhcccCCCceEeeh
Q psy7226 46 EVLVPLINHMFN-G-I--NATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 46 ~~~~plv~~~l~-G-~--n~~i~aYG~tgSGKTyTm~ 78 (279)
.+..|-+|.++. | + ...+.-||++|||||..+.
T Consensus 42 sTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal 78 (349)
T PRK09354 42 STGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLAL 78 (349)
T ss_pred cCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHH
Confidence 346788899887 4 3 3456789999999997654
No 333
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=42.19 E-value=7.2 Score=29.35 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=11.1
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
|+..|..|+|||..
T Consensus 2 I~V~G~~g~GKTsL 15 (119)
T PF08477_consen 2 IVVLGDSGVGKTSL 15 (119)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECcCCCCHHHH
Confidence 45679999999953
No 334
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=42.17 E-value=6.7 Score=41.68 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=21.4
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
...|..++.+.+.++ ..|..|+||||+|-
T Consensus 352 r~Av~~il~s~~v~v-v~G~AGTGKTT~l~ 380 (988)
T PRK13889 352 ADALAHVTDGRDLGV-VVGYAGTGKSAMLG 380 (988)
T ss_pred HHHHHHHhcCCCeEE-EEeCCCCCHHHHHH
Confidence 345667777766555 66999999999864
No 335
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=41.69 E-value=11 Score=32.81 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=19.1
Q ss_pred hcccCCCceEeeh-------------HHHHHHHHHHH
Q psy7226 66 YGQTGGGKTYTVS-------------AMIMKTLQHVM 89 (279)
Q Consensus 66 YG~tgSGKTyTm~-------------Gii~r~l~~lf 89 (279)
=||+||||+...- |.+.|++-...
T Consensus 10 DGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~ 46 (222)
T COG0283 10 DGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAA 46 (222)
T ss_pred eCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHH
Confidence 4999999997643 88888877764
No 336
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=41.68 E-value=5.4 Score=36.21 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=18.9
Q ss_pred hhhhhhhcccCCCceEeehHHHHHHHHHHHHH
Q psy7226 60 NATLLAYGQTGGGKTYTVSAMIMKTLQHVMQR 91 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~Gii~r~l~~lf~~ 91 (279)
...++.||..|+|||.. ..++..||..
T Consensus 76 ~~~~~l~G~g~nGKStl-----~~~l~~l~G~ 102 (304)
T TIGR01613 76 QKLFFLYGNGGNGKSTF-----QNLLSNLLGD 102 (304)
T ss_pred eEEEEEECCCCCcHHHH-----HHHHHHHhCh
Confidence 35678899999999943 4455566643
No 337
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=41.45 E-value=7.7 Score=30.36 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=11.6
Q ss_pred hhhhcccCCCceEee
Q psy7226 63 LLAYGQTGGGKTYTV 77 (279)
Q Consensus 63 i~aYG~tgSGKTyTm 77 (279)
|+-.|++|||||+..
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999643
No 338
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=41.43 E-value=9.5 Score=34.62 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=22.9
Q ss_pred hHHhHHhhhcch---hhhhhhhcccCCCceEeehHH
Q psy7226 48 LVPLINHMFNGI---NATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 48 ~~plv~~~l~G~---n~~i~aYG~tgSGKTyTm~Gi 80 (279)
..+-++.++.|- ...+.-||++|||||..+.-+
T Consensus 80 g~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~ 115 (310)
T TIGR02236 80 GSKELDELLGGGIETQAITEVFGEFGSGKTQICHQL 115 (310)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 345667777643 445678899999999765533
No 339
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=41.39 E-value=6.3 Score=31.85 Aligned_cols=15 Identities=33% Similarity=0.508 Sum_probs=11.9
Q ss_pred hhhhcccCCCceEee
Q psy7226 63 LLAYGQTGGGKTYTV 77 (279)
Q Consensus 63 i~aYG~tgSGKTyTm 77 (279)
|.-+|+.|||||+..
T Consensus 3 I~i~G~~GSGKstia 17 (171)
T TIGR02173 3 ITISGPPGSGKTTVA 17 (171)
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999553
No 340
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=41.37 E-value=8.8 Score=33.84 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=17.5
Q ss_pred HHhhhcc---hhhhhhhhcccCCCceEe
Q psy7226 52 INHMFNG---INATLLAYGQTGGGKTYT 76 (279)
Q Consensus 52 v~~~l~G---~n~~i~aYG~tgSGKTyT 76 (279)
++.++.| ....++-+|..|||||.-
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f 39 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIF 39 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHH
Confidence 4555553 345678899999999943
No 341
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=41.31 E-value=12 Score=37.83 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=13.7
Q ss_pred hhhhhhcccCCCceEee
Q psy7226 61 ATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm 77 (279)
..++..|+||||||...
T Consensus 257 ~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 257 MNRLLQGDVGSGKTLVA 273 (630)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 34688899999999764
No 342
>PF04466 Terminase_3: Phage terminase large subunit; InterPro: IPR006701 Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possesses an endonuclease and ATPase activity that requires Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences [, ].; GO: 0006323 DNA packaging; PDB: 2WBN_A 2WC9_A.
Probab=41.23 E-value=8.9 Score=36.25 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=0.0
Q ss_pred hhhhcccCCCceEeehH
Q psy7226 63 LLAYGQTGGGKTYTVSA 79 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~G 79 (279)
+++||..|||||++...
T Consensus 5 ~v~~GGrGS~KS~~~a~ 21 (387)
T PF04466_consen 5 IVLKGGRGSGKSSFIAQ 21 (387)
T ss_dssp -----------------
T ss_pred EEEECCCCchHHHHHHH
Confidence 57899999999999763
No 343
>PRK04040 adenylate kinase; Provisional
Probab=41.21 E-value=6.4 Score=33.22 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=12.4
Q ss_pred hhhhcccCCCceEee
Q psy7226 63 LLAYGQTGGGKTYTV 77 (279)
Q Consensus 63 i~aYG~tgSGKTyTm 77 (279)
|+.+|..|||||+.+
T Consensus 5 i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 5 VVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEeCCCCCHHHHH
Confidence 567899999999654
No 344
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=41.08 E-value=6.3 Score=31.76 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=11.1
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
|+..|.+|||||+.
T Consensus 2 i~i~G~~GsGKSTl 15 (149)
T cd02027 2 IWLTGLSGSGKSTI 15 (149)
T ss_pred EEEEcCCCCCHHHH
Confidence 45679999999854
No 345
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.99 E-value=9.4 Score=41.11 Aligned_cols=19 Identities=32% Similarity=0.683 Sum_probs=14.8
Q ss_pred ccCCCceEeehHHHHHHHH
Q psy7226 68 QTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 68 ~tgSGKTyTm~Gii~r~l~ 86 (279)
..||||||||.+++.|.+-
T Consensus 17 sAGtGKT~ti~~~~lrll~ 35 (1087)
T TIGR00609 17 SAGTGKTFTIAQLYLRLLL 35 (1087)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4699999998877766554
No 346
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=40.98 E-value=8.2 Score=35.43 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=17.1
Q ss_pred hhhcchh-hhhhhhcccCCCceEeeh
Q psy7226 54 HMFNGIN-ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 54 ~~l~G~n-~~i~aYG~tgSGKTyTm~ 78 (279)
.+-.|.- -.++-||+.|+|||.+..
T Consensus 29 ~~~~~~~~~~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 29 AIKNGRIAHAYLFSGPRGTGKTSIAR 54 (355)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 3334543 356889999999996643
No 347
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=40.93 E-value=5.7 Score=31.37 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=17.1
Q ss_pred hhhhhhcccCCCceEeehHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
..|+-+|.-|||||+-+-|++.
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~ 37 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLAR 37 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999976666544
No 348
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.91 E-value=15 Score=37.21 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=14.2
Q ss_pred hhhhcccCCCceEeeh
Q psy7226 63 LLAYGQTGGGKTYTVS 78 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~ 78 (279)
++-||++|+|||.++.
T Consensus 113 llL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 113 LLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998876
No 349
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.89 E-value=8.5 Score=36.90 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=17.4
Q ss_pred hhhhhhcccCCCceEeehHHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIMK 83 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~r 83 (279)
..|...|++|+|||+|+.-|..+
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35667799999999998755443
No 350
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=40.86 E-value=8 Score=35.37 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=13.1
Q ss_pred hhhhhcccCCCceEeeh
Q psy7226 62 TLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~ 78 (279)
.|+-.|+||||||....
T Consensus 6 ii~I~GpTasGKS~LAl 22 (300)
T PRK14729 6 IVFIFGPTAVGKSNILF 22 (300)
T ss_pred EEEEECCCccCHHHHHH
Confidence 35667999999996543
No 351
>PRK10867 signal recognition particle protein; Provisional
Probab=40.83 E-value=8.6 Score=37.04 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=17.6
Q ss_pred hhhhhhhcccCCCceEeehHHHH
Q psy7226 60 NATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
...|+..|++|||||+|..-+..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 35677779999999998765543
No 352
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.74 E-value=5.5 Score=41.04 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=17.0
Q ss_pred hhhhhhcccCCCceEeehHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
.+|.-.|++|+|||+|+.-|.-
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 3567789999999999774443
No 353
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=40.72 E-value=13 Score=37.86 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=20.5
Q ss_pred chhhhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 58 GINATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 58 G~n~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
+.+.-++.+|+||||||..+ +||..+.
T Consensus 137 ~~~~hvlviApTgSGKgvg~--VIPnLL~ 163 (670)
T PRK13850 137 GEQPHSLVVAPTRAGKGVGV--VIPTLLT 163 (670)
T ss_pred CCCceEEEEecCCCCceeee--hHhHHhc
Confidence 33445788999999999987 6776654
No 354
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=40.68 E-value=9 Score=31.31 Aligned_cols=18 Identities=39% Similarity=0.477 Sum_probs=13.3
Q ss_pred hhhcccCCCceEeehHHH
Q psy7226 64 LAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 64 ~aYG~tgSGKTyTm~Gii 81 (279)
+-.|++|+|||.++..+.
T Consensus 4 ~~~G~~G~GKTt~~~~la 21 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLA 21 (173)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 445999999997755443
No 355
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=40.52 E-value=11 Score=33.18 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=21.1
Q ss_pred hHHhHHhhhc--chhhhhhhhcccCCCceEee
Q psy7226 48 LVPLINHMFN--GINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 48 ~~plv~~~l~--G~n~~i~aYG~tgSGKTyTm 77 (279)
+..+.+.+.+ .....|.-+|..|.|||..+
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 3455555555 45566778999999999654
No 356
>KOG0745|consensus
Probab=40.46 E-value=14 Score=35.74 Aligned_cols=15 Identities=47% Similarity=0.711 Sum_probs=12.3
Q ss_pred hhhhhcccCCCceEe
Q psy7226 62 TLLAYGQTGGGKTYT 76 (279)
Q Consensus 62 ~i~aYG~tgSGKTyT 76 (279)
-|+..|+||||||+.
T Consensus 228 NvLllGPtGsGKTll 242 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLL 242 (564)
T ss_pred cEEEECCCCCchhHH
Confidence 457789999999964
No 357
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=40.42 E-value=8.2 Score=37.68 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=13.9
Q ss_pred hhhhhhcccCCCceEeeh
Q psy7226 61 ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~ 78 (279)
-.|+-+|++|||||+.|-
T Consensus 33 Eiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 33 SLLFLCGSSGDGKSEILA 50 (504)
T ss_pred CEEEEECCCCCCHHHHHh
Confidence 345678999999998654
No 358
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=40.30 E-value=6.4 Score=34.43 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=10.5
Q ss_pred hhcccCCCceEee
Q psy7226 65 AYGQTGGGKTYTV 77 (279)
Q Consensus 65 aYG~tgSGKTyTm 77 (279)
-.|++|||||+.+
T Consensus 33 iiGpSGSGKSTlL 45 (240)
T COG1126 33 IIGPSGSGKSTLL 45 (240)
T ss_pred EECCCCCCHHHHH
Confidence 4599999999654
No 359
>PRK05480 uridine/cytidine kinase; Provisional
Probab=40.29 E-value=9.5 Score=32.33 Aligned_cols=16 Identities=38% Similarity=0.464 Sum_probs=12.0
Q ss_pred hhhhcccCCCceEeeh
Q psy7226 63 LLAYGQTGGGKTYTVS 78 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~ 78 (279)
|.--|.+|||||+.+.
T Consensus 9 I~I~G~sGsGKTTl~~ 24 (209)
T PRK05480 9 IGIAGGSGSGKTTVAS 24 (209)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4456999999996543
No 360
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=40.26 E-value=8.5 Score=39.06 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=24.8
Q ss_pred eehhhhHHhHHhhh-cchhhhhhhhcccCCCceEeeh
Q psy7226 43 IFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 43 vf~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
+|.-. ......++ .+.|-||+.-|.+|||||.|+-
T Consensus 69 ifavA-~~Ay~~m~~~~~~QsIiisGESGsGKTet~K 104 (653)
T cd01379 69 IFAIA-DAAYQSLVTYNQDQCIVISGESGSGKTESAH 104 (653)
T ss_pred HHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 55432 33333333 4889999999999999999965
No 361
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=40.21 E-value=5.3 Score=30.78 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=11.8
Q ss_pred hhhhcccCCCceEee
Q psy7226 63 LLAYGQTGGGKTYTV 77 (279)
Q Consensus 63 i~aYG~tgSGKTyTm 77 (279)
|...|.+|||||..+
T Consensus 4 i~~~G~~~~GKstl~ 18 (161)
T TIGR00231 4 IVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999643
No 362
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=40.17 E-value=9 Score=30.73 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=15.6
Q ss_pred hhhhcccCCCceEeehHHHHHH
Q psy7226 63 LLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
|.-.|..+||||..+.-|+...
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4456999999997655555544
No 363
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=40.08 E-value=9 Score=38.39 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=16.6
Q ss_pred hhhcccCCCceEeehHHHHHHH
Q psy7226 64 LAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 64 ~aYG~tgSGKTyTm~Gii~r~l 85 (279)
+-.|..|||||||+..|+....
T Consensus 164 vitGgpGTGKTt~v~~ll~~l~ 185 (586)
T TIGR01447 164 LITGGPGTGKTTTVARLLLALV 185 (586)
T ss_pred EEEcCCCCCHHHHHHHHHHHHH
Confidence 3458899999999887765543
No 364
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=40.05 E-value=5.5 Score=33.26 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=11.1
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
|+-.|++|||||..
T Consensus 5 i~l~G~sGsGKsTl 18 (186)
T PRK10078 5 IWLMGPSGSGKDSL 18 (186)
T ss_pred EEEECCCCCCHHHH
Confidence 44579999999954
No 365
>PTZ00110 helicase; Provisional
Probab=39.97 E-value=10 Score=37.55 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=17.2
Q ss_pred HHhhhcchhhhhhhhcccCCCceEe
Q psy7226 52 INHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 52 v~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
+..+++|.+. ++..+||||||.+
T Consensus 161 ip~~l~G~dv--I~~ApTGSGKTla 183 (545)
T PTZ00110 161 WPIALSGRDM--IGIAETGSGKTLA 183 (545)
T ss_pred HHHHhcCCCE--EEEeCCCChHHHH
Confidence 4456778865 5567999999965
No 366
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=39.95 E-value=13 Score=38.87 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=21.5
Q ss_pred ceehhhhHHhHHhhhcchhhhhhhhcccCCCceEee
Q psy7226 42 TIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 42 ~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm 77 (279)
.||... ..+++.+-++. .++..|+||||||..+
T Consensus 5 Pi~~~~-~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 5 PVAAVL-PELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred CHHHHH-HHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 344443 55666654444 3567899999999764
No 367
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=39.94 E-value=14 Score=32.96 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=16.8
Q ss_pred hhhcccCCCceEeehHHHHHHHHH
Q psy7226 64 LAYGQTGGGKTYTVSAMIMKTLQH 87 (279)
Q Consensus 64 ~aYG~tgSGKTyTm~Gii~r~l~~ 87 (279)
.-.|.+|||||.-+..++..++..
T Consensus 25 ~vtGvSGsGKStL~~~~l~~~~~~ 48 (261)
T cd03271 25 CVTGVSGSGKSSLINDTLYPALAR 48 (261)
T ss_pred EEECCCCCchHHHHHHHHHHHHHH
Confidence 345999999998877555444443
No 368
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=39.93 E-value=7 Score=35.95 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=11.6
Q ss_pred hhcccCCCceEeeh
Q psy7226 65 AYGQTGGGKTYTVS 78 (279)
Q Consensus 65 aYG~tgSGKTyTm~ 78 (279)
-+|++|||||.++-
T Consensus 33 LlGpSGaGKsTlLR 46 (345)
T COG1118 33 LLGPSGAGKSTLLR 46 (345)
T ss_pred EECCCCCcHHHHHH
Confidence 46999999998753
No 369
>PRK10865 protein disaggregation chaperone; Provisional
Probab=39.67 E-value=7.2 Score=40.88 Aligned_cols=18 Identities=39% Similarity=0.488 Sum_probs=14.5
Q ss_pred hhhhhhcccCCCceEeeh
Q psy7226 61 ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~ 78 (279)
+.++-+|++|+|||++..
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~ 616 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCK 616 (857)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 467778999999998643
No 370
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.57 E-value=5.9 Score=38.00 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=16.5
Q ss_pred hhhhhhcccCCCceEeehHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
..++..|++|+|||+|+.-|..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3466779999999998765443
No 371
>PRK03839 putative kinase; Provisional
Probab=39.57 E-value=7 Score=32.26 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=10.8
Q ss_pred hhhhcccCCCceE
Q psy7226 63 LLAYGQTGGGKTY 75 (279)
Q Consensus 63 i~aYG~tgSGKTy 75 (279)
|+-.|..|||||+
T Consensus 3 I~l~G~pGsGKsT 15 (180)
T PRK03839 3 IAITGTPGVGKTT 15 (180)
T ss_pred EEEECCCCCCHHH
Confidence 4567999999995
No 372
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=39.37 E-value=8.7 Score=31.51 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=11.4
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
|...|++|||||..
T Consensus 4 i~l~G~~GsGKsTl 17 (180)
T TIGR03263 4 IVISGPSGVGKSTL 17 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 45679999999953
No 373
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=39.34 E-value=7.4 Score=37.21 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=14.0
Q ss_pred hhhhhhcccCCCceEee
Q psy7226 61 ATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm 77 (279)
..|+-+|++|+|||+..
T Consensus 109 ~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 109 SNILLIGPTGSGKTLLA 125 (412)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45888999999999654
No 374
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=39.28 E-value=7.3 Score=33.17 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=11.6
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
|+.+|+.|||||+.
T Consensus 2 I~i~G~pGsGKsT~ 15 (210)
T TIGR01351 2 LVLLGPPGSGKGTQ 15 (210)
T ss_pred EEEECCCCCCHHHH
Confidence 56689999999864
No 375
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=39.25 E-value=13 Score=40.12 Aligned_cols=26 Identities=38% Similarity=0.636 Sum_probs=20.6
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEe
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
..+|..++.|.++.+++ +||+|||.+
T Consensus 466 ~eaI~aiL~GrDVLVim--PTGSGKSLc 491 (1195)
T PLN03137 466 REIINATMSGYDVFVLM--PTGGGKSLT 491 (1195)
T ss_pred HHHHHHHHcCCCEEEEc--CCCccHHHH
Confidence 55677889999976555 999999965
No 376
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=39.12 E-value=5.6 Score=36.56 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=13.2
Q ss_pred hcccCCCceEeeh---HHHH
Q psy7226 66 YGQTGGGKTYTVS---AMIM 82 (279)
Q Consensus 66 YG~tgSGKTyTm~---Gii~ 82 (279)
-|.+|||||.|.. |++|
T Consensus 37 VGESGsGKS~~~~aim~llp 56 (316)
T COG0444 37 VGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred EcCCCCCHHHHHHHHHhccC
Confidence 4999999998865 5554
No 377
>PRK14530 adenylate kinase; Provisional
Probab=39.09 E-value=7.3 Score=33.31 Aligned_cols=14 Identities=36% Similarity=0.620 Sum_probs=11.6
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
|+-.|++|||||+.
T Consensus 6 I~i~G~pGsGKsT~ 19 (215)
T PRK14530 6 ILLLGAPGAGKGTQ 19 (215)
T ss_pred EEEECCCCCCHHHH
Confidence 56689999999954
No 378
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=39.05 E-value=10 Score=38.30 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=17.8
Q ss_pred hhhhcccCCCceEeehHHHHHHHH
Q psy7226 63 LLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
.+..|.||+|||..+..++...+.
T Consensus 183 tlV~GtTGsGKT~l~~~li~q~i~ 206 (643)
T TIGR03754 183 TLVLGTTRVGKTRLAELLITQDIR 206 (643)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHH
Confidence 366799999999887766555443
No 379
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=39.04 E-value=7.1 Score=35.49 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=11.7
Q ss_pred hhhhcccCCCceEee
Q psy7226 63 LLAYGQTGGGKTYTV 77 (279)
Q Consensus 63 i~aYG~tgSGKTyTm 77 (279)
|---|++|||||+++
T Consensus 65 IGIaG~~GSGKSTla 79 (290)
T TIGR00554 65 ISIAGSVAVGKSTTA 79 (290)
T ss_pred EEEECCCCCCHHHHH
Confidence 335599999999775
No 380
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.02 E-value=9.2 Score=35.56 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=20.3
Q ss_pred HHhHHhhhcchh-hhhhhhcccCCCceEeehHH
Q psy7226 49 VPLINHMFNGIN-ATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 49 ~plv~~~l~G~n-~~i~aYG~tgSGKTyTm~Gi 80 (279)
..+...+-.|.- -.++-||+.|+|||+++.-+
T Consensus 27 ~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 27 NTLLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 333333334543 36778999999999765433
No 381
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=38.78 E-value=4.3 Score=40.17 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=20.4
Q ss_pred cchhhhhhhhcccCCCceEeehHHHHHHHHHH
Q psy7226 57 NGINATLLAYGQTGGGKTYTVSAMIMKTLQHV 88 (279)
Q Consensus 57 ~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~~l 88 (279)
...+..|+-+|.+||||+ ++.+.+...
T Consensus 239 A~s~~pVLI~GE~GTGKe-----~~A~~IH~~ 265 (538)
T PRK15424 239 ARSSAAVLIQGETGTGKE-----LAAQAIHRE 265 (538)
T ss_pred hCCCCcEEEECCCCCCHH-----HHHHHHHHh
Confidence 456788999999999999 445555554
No 382
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=38.76 E-value=15 Score=31.19 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=10.8
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
|.-.|++|+|||.-
T Consensus 32 iaitGPSG~GKStl 45 (223)
T COG4619 32 IAITGPSGCGKSTL 45 (223)
T ss_pred EEEeCCCCccHHHH
Confidence 44569999999943
No 383
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=38.73 E-value=13 Score=38.40 Aligned_cols=36 Identities=17% Similarity=0.383 Sum_probs=25.8
Q ss_pred ceehhhhHHhHHhhh-cchhhhhhhhcccCCCceEeeh
Q psy7226 42 TIFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 42 ~vf~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
.||.-. ......++ .|.|-||+.-|.+|||||.|.-
T Consensus 68 HifaiA-~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK 104 (767)
T cd01386 68 HIYSLA-QTAYRALLETRRDQSIIFLGRSGAGKTTSCK 104 (767)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEecCCCCCcHHHHH
Confidence 355443 33333444 5899999999999999999864
No 384
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=38.55 E-value=10 Score=37.02 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=21.0
Q ss_pred HHhHHhhhcc---hhhhhhhhcccCCCceEe
Q psy7226 49 VPLINHMFNG---INATLLAYGQTGGGKTYT 76 (279)
Q Consensus 49 ~plv~~~l~G---~n~~i~aYG~tgSGKTyT 76 (279)
-|=+|.++.| ...+++-+|++|||||.-
T Consensus 7 I~gLD~il~GGlp~g~~~Li~G~pGsGKT~l 37 (484)
T TIGR02655 7 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLF 37 (484)
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHH
Confidence 3456777764 467788999999999954
No 385
>KOG0344|consensus
Probab=38.47 E-value=11 Score=37.20 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=17.4
Q ss_pred HhHHhhhcchhhhhhhhcccCCCceEe
Q psy7226 50 PLINHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 50 plv~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
+++..++.+.+ ++|+++||||||+.
T Consensus 165 ~aipvfl~~r~--~lAcapTGsgKtla 189 (593)
T KOG0344|consen 165 QAIPVFLEKRD--VLACAPTGSGKTLA 189 (593)
T ss_pred hhhhhhhcccc--eEEeccCCCcchhh
Confidence 33444455555 59999999999665
No 386
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=38.40 E-value=9.4 Score=32.38 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=12.9
Q ss_pred hhcccCCCceEeehHHH
Q psy7226 65 AYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 65 aYG~tgSGKTyTm~Gii 81 (279)
-+|++|+|||..|.+|.
T Consensus 26 i~G~NGsGKStll~ai~ 42 (198)
T cd03276 26 IVGNNGSGKSAILTALT 42 (198)
T ss_pred EECCCCCcHHHHHHHHH
Confidence 47999999996655543
No 387
>KOG0728|consensus
Probab=38.39 E-value=17 Score=32.70 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=24.2
Q ss_pred hhhhhhcccCCCceEeeh-----------------------HHHHHHHHHHHHHcCc
Q psy7226 61 ATLLAYGQTGGGKTYTVS-----------------------AMIMKTLQHVMQRCNK 94 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~-----------------------Gii~r~l~~lf~~~~~ 94 (279)
--++.||+.|+|||...- |-=.|.+++||-...+
T Consensus 182 KGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmare 238 (404)
T KOG0728|consen 182 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMARE 238 (404)
T ss_pred cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 347899999999985421 4456778888866544
No 388
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=38.38 E-value=25 Score=32.31 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCc--cchhhhHHHHhhhh--hhhhcC
Q psy7226 79 AMIMKTLQHVMQRCNK--DDVYMSYLQLYSEK--CYDLLN 114 (279)
Q Consensus 79 Gii~r~l~~lf~~~~~--~~v~vS~~EIy~E~--v~DLL~ 114 (279)
|.+.-.+..-|+.+-+ +.-.+.|+|+++|- |.||+-
T Consensus 202 Ggl~~li~agfetLvEaGy~PE~AyfE~lhE~klIvdLiy 241 (338)
T COG0059 202 GGLQALIKAGFETLVEAGYQPELAYFECLHELKLIVDLIY 241 (338)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555655544 88999999998865 899985
No 389
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=38.35 E-value=4.8 Score=39.45 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=26.4
Q ss_pred cchhhhhhhhcccCCCceEeehHHHHHHHHHHHHHcCccchhhhHHHHh
Q psy7226 57 NGINATLLAYGQTGGGKTYTVSAMIMKTLQHVMQRCNKDDVYMSYLQLY 105 (279)
Q Consensus 57 ~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~~lf~~~~~~~v~vS~~EIy 105 (279)
...+..|+-+|.+|+||++ +.+++.....+...--+.+.|-.+.
T Consensus 207 a~~~~pVlI~Ge~GtGK~~-----~A~~ih~~s~r~~~p~v~v~c~~~~ 250 (509)
T PRK05022 207 AASDLNVLILGETGVGKEL-----VARAIHAASPRADKPLVYLNCAALP 250 (509)
T ss_pred hCCCCcEEEECCCCccHHH-----HHHHHHHhCCcCCCCeEEEEcccCC
Confidence 4667889999999999994 3455554443333323333333333
No 390
>PRK14701 reverse gyrase; Provisional
Probab=38.34 E-value=15 Score=41.30 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=21.9
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEeehHHHH
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
...+..+++|.+. ++.++||||||. +++++
T Consensus 85 ~~~i~~il~G~d~--li~APTGsGKTl--~~~~~ 114 (1638)
T PRK14701 85 KTWAKRILRGKSF--SIVAPTGMGKST--FGAFI 114 (1638)
T ss_pred HHHHHHHHcCCCE--EEEEcCCCCHHH--HHHHH
Confidence 4566778889876 456799999997 44443
No 391
>KOG0348|consensus
Probab=38.28 E-value=12 Score=37.07 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=17.9
Q ss_pred hHHhhhcchhhhhhhhcccCCCceEe
Q psy7226 51 LINHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 51 lv~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
.|..+++|.++.|-| |||||||-.
T Consensus 167 ~IP~lL~grD~lV~a--QTGSGKTLA 190 (708)
T KOG0348|consen 167 AIPVLLEGRDALVRA--QTGSGKTLA 190 (708)
T ss_pred chhhhhcCcceEEEc--CCCCcccHH
Confidence 445567898886655 999999854
No 392
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=38.21 E-value=7.8 Score=32.50 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=11.5
Q ss_pred hhhhcccCCCceEee
Q psy7226 63 LLAYGQTGGGKTYTV 77 (279)
Q Consensus 63 i~aYG~tgSGKTyTm 77 (279)
|+-.|++|||||+-.
T Consensus 3 iiilG~pGaGK~T~A 17 (178)
T COG0563 3 ILILGPPGAGKSTLA 17 (178)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999643
No 393
>PRK13531 regulatory ATPase RavA; Provisional
Probab=38.17 E-value=11 Score=36.89 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=20.0
Q ss_pred hhHHhHHhhhcchhhhhhhhcccCCCceEee
Q psy7226 47 VLVPLINHMFNGINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 47 ~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm 77 (279)
++.-++..++.|.+ |+-+|++|+|||+..
T Consensus 28 vI~lll~aalag~h--VLL~GpPGTGKT~LA 56 (498)
T PRK13531 28 AIRLCLLAALSGES--VFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHHccCCC--EEEECCCChhHHHHH
Confidence 34555555666655 577899999999653
No 394
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=38.00 E-value=9.4 Score=33.04 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=14.7
Q ss_pred hhhhcccCCCceEeehHHH
Q psy7226 63 LLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii 81 (279)
+--.|++|||||..+.|++
T Consensus 24 ~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 24 VVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 3456999999998876655
No 395
>KOG3886|consensus
Probab=37.99 E-value=16 Score=32.45 Aligned_cols=19 Identities=32% Similarity=0.779 Sum_probs=14.4
Q ss_pred hhhhcccCCCceEeehHHHH
Q psy7226 63 LLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~ 82 (279)
|+..|-|||||| +|.+|+.
T Consensus 7 vlLMGrsGsGKs-SmrsiiF 25 (295)
T KOG3886|consen 7 VLLMGRSGSGKS-SMRSIIF 25 (295)
T ss_pred EEEeccCCCCcc-ccchhhh
Confidence 456799999999 5666655
No 396
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=37.94 E-value=9.3 Score=30.35 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=9.7
Q ss_pred hhhcccCCCceE
Q psy7226 64 LAYGQTGGGKTY 75 (279)
Q Consensus 64 ~aYG~tgSGKTy 75 (279)
.-.|++|||||.
T Consensus 3 ~i~GpsGsGKst 14 (137)
T cd00071 3 VLSGPSGVGKST 14 (137)
T ss_pred EEECCCCCCHHH
Confidence 345999999994
No 397
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=37.91 E-value=12 Score=37.79 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=14.7
Q ss_pred hhhhhhcccCCCceEeehH
Q psy7226 61 ATLLAYGQTGGGKTYTVSA 79 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~G 79 (279)
..++..|..|||||.||..
T Consensus 15 ~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 15 GPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCEEEEecCCCCHHHHHHH
Confidence 3456677889999999763
No 398
>PRK06851 hypothetical protein; Provisional
Probab=37.87 E-value=11 Score=35.36 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=23.6
Q ss_pred hHHhhhcchhhhhhhhcccCCCceEeehHHHHHH
Q psy7226 51 LINHMFNGINATLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 51 lv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
+.+.++++.+-.++--|.+|+|||++|.-++-..
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~~~i~~~~ 54 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLMKKIGEEF 54 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445556666667778999999998876544433
No 399
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=37.83 E-value=13 Score=33.99 Aligned_cols=14 Identities=43% Similarity=0.655 Sum_probs=12.3
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
|+-||+.|-|||..
T Consensus 55 vLl~GPPGlGKTTL 68 (332)
T COG2255 55 VLLFGPPGLGKTTL 68 (332)
T ss_pred EEeeCCCCCcHHHH
Confidence 68999999999954
No 400
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=37.83 E-value=10 Score=31.20 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=20.2
Q ss_pred HhHHhhhc-chhhhhhhhcccCCCceEe
Q psy7226 50 PLINHMFN-GINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 50 plv~~~l~-G~n~~i~aYG~tgSGKTyT 76 (279)
.++..+.. .....|+..|..|||||..
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtl 30 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTL 30 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHH
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHH
Confidence 34555554 6777889999999999953
No 401
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=37.80 E-value=11 Score=39.35 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=17.9
Q ss_pred hhhhhcccCCCceEeehHHHHHHH
Q psy7226 62 TLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
-.+..|+||||||+.|--|+.+.+
T Consensus 443 n~~I~G~tGsGKS~l~~~l~~~~~ 466 (811)
T PRK13873 443 HTLVVGPTGAGKSVLLALMALQFR 466 (811)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhh
Confidence 345689999999998876655444
No 402
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=37.76 E-value=7.2 Score=30.80 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=14.9
Q ss_pred chhhhhhhhcccCCCceEe
Q psy7226 58 GINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 58 G~n~~i~aYG~tgSGKTyT 76 (279)
..+..|+-+|..||||++.
T Consensus 19 ~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp CSSS-EEEECCTTSSHHHH
T ss_pred CCCCcEEEEcCCCCCHHHH
Confidence 5566788899999999954
No 403
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=37.62 E-value=12 Score=36.39 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=15.4
Q ss_pred hhhhhhhhcccCCCceEee
Q psy7226 59 INATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 59 ~n~~i~aYG~tgSGKTyTm 77 (279)
....++-||+.|+|||+..
T Consensus 275 ~~~giLl~GpPGtGKT~lA 293 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLA 293 (494)
T ss_pred CCCeeEEECCCCCCHHHHH
Confidence 3346899999999999764
No 404
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=37.60 E-value=4.7 Score=41.06 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=16.3
Q ss_pred cchhhhhhhhcccCCCceEe
Q psy7226 57 NGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 57 ~G~n~~i~aYG~tgSGKTyT 76 (279)
...+..|+-+|++|||||+.
T Consensus 396 a~~~~pVLI~GE~GTGK~~l 415 (686)
T PRK15429 396 AQSDSTVLILGETGTGKELI 415 (686)
T ss_pred hCCCCCEEEECCCCcCHHHH
Confidence 45567789999999999953
No 405
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=37.51 E-value=11 Score=32.40 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=19.0
Q ss_pred HhHHhhhc-c--hhhhhhhhcccCCCceEe
Q psy7226 50 PLINHMFN-G--INATLLAYGQTGGGKTYT 76 (279)
Q Consensus 50 plv~~~l~-G--~n~~i~aYG~tgSGKTyT 76 (279)
|-+|.++. | .+..++.+|++|||||.-
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 34566663 2 346778899999999954
No 406
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=37.49 E-value=8 Score=33.59 Aligned_cols=14 Identities=43% Similarity=0.570 Sum_probs=11.4
Q ss_pred hhcccCCCceEeeh
Q psy7226 65 AYGQTGGGKTYTVS 78 (279)
Q Consensus 65 aYG~tgSGKTyTm~ 78 (279)
-.||.|+|||+|..
T Consensus 35 LLGPNGAGKTT~Fy 48 (243)
T COG1137 35 LLGPNGAGKTTTFY 48 (243)
T ss_pred EECCCCCCceeEEE
Confidence 35999999998853
No 407
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=37.43 E-value=8.8 Score=35.79 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=13.3
Q ss_pred hhhhcccCCCceEeehHH
Q psy7226 63 LLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gi 80 (279)
+.-.|.||||||++|.-|
T Consensus 144 ivl~G~TGsGKT~iL~~L 161 (345)
T PRK11784 144 VVLGGNTGSGKTELLQAL 161 (345)
T ss_pred EecCCCCcccHHHHHHHH
Confidence 446699999999765433
No 408
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=37.30 E-value=13 Score=32.16 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=14.7
Q ss_pred hhhhcccCCCceEeehHHHHHH
Q psy7226 63 LLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
++-.|++|+|||..+.-++...
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~ 37 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENI 37 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 3445999999997655444333
No 409
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=37.25 E-value=13 Score=33.90 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=23.0
Q ss_pred hHHhHHhhhcch---hhhhhhhcccCCCceEeehHHH
Q psy7226 48 LVPLINHMFNGI---NATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 48 ~~plv~~~l~G~---n~~i~aYG~tgSGKTyTm~Gii 81 (279)
..+-++.++.|- ...+.-||++|||||..+.-++
T Consensus 87 g~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~ 123 (317)
T PRK04301 87 GSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLA 123 (317)
T ss_pred CCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHH
Confidence 345666777642 4456678999999997655443
No 410
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=37.19 E-value=10 Score=38.95 Aligned_cols=18 Identities=39% Similarity=0.632 Sum_probs=14.6
Q ss_pred hhhhhhcccCCCceEeeh
Q psy7226 61 ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~ 78 (279)
-.|+-||++|+|||+.+.
T Consensus 213 ~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred ceEEEECCCCCChHHHHH
Confidence 347889999999997654
No 411
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=37.13 E-value=9.7 Score=39.83 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=16.8
Q ss_pred hhhhhhcccCCCceEeehHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
.-.+..|.||||||++|-.|+.
T Consensus 450 ~N~~I~G~sGsGKS~l~k~l~~ 471 (844)
T PRK13721 450 YNMAVCGTSGAGKTGLIQPLIR 471 (844)
T ss_pred ccEEEEcCCCCCHHHHHHHHHH
Confidence 3456779999999999875543
No 412
>KOG0390|consensus
Probab=36.88 E-value=12 Score=38.49 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=29.5
Q ss_pred CCcceehhhhHHhHHhhh-cchhhhhhhhcccCCCceEeehHH
Q psy7226 39 SNETIFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 39 ~Q~~vf~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyTm~Gi 80 (279)
-|.+-|+-...-+...+. .+.++||+|-.+ |+|||+-+.-+
T Consensus 242 HQ~EG~~FL~knl~g~~~~~~~~GCImAd~~-GlGKTlq~Isf 283 (776)
T KOG0390|consen 242 HQREGFEFLYKNLAGLIRPKNSGGCIMADEP-GLGKTLQCISF 283 (776)
T ss_pred hHHHHHHHHHhhhhcccccCCCCceEeeCCC-CcchHHHHHHH
Confidence 366766666555555544 388999999875 99999876543
No 413
>KOG0743|consensus
Probab=36.83 E-value=12 Score=36.13 Aligned_cols=33 Identities=18% Similarity=0.040 Sum_probs=20.1
Q ss_pred hhhhhhccccc--ccchhhhhHHHhcCchhHHHHH
Q psy7226 226 LLRNEARKINL--SLHYLEQEEEEEKGKEEEEEEE 258 (279)
Q Consensus 226 ~r~~E~~~IN~--SL~aL~~vi~aL~~~~~~~~~~ 258 (279)
..+.|.---|+ -.-+|..+|.+|.+......+.
T Consensus 407 A~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~~~ 441 (457)
T KOG0743|consen 407 AQVAEELMKNKNDADVALKGLVEALESKKEKRNKD 441 (457)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhhhhhhccc
Confidence 33444444454 5678888888887765544333
No 414
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=36.82 E-value=4.9 Score=39.57 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=16.2
Q ss_pred cchhhhhhhhcccCCCceEe
Q psy7226 57 NGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 57 ~G~n~~i~aYG~tgSGKTyT 76 (279)
...+..|+-+|.+||||++.
T Consensus 224 A~~~~pvlI~GE~GtGK~~l 243 (520)
T PRK10820 224 AMLDAPLLITGDTGTGKDLL 243 (520)
T ss_pred hCCCCCEEEECCCCccHHHH
Confidence 34567789999999999954
No 415
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=36.82 E-value=10 Score=32.99 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=14.4
Q ss_pred hhhhhhcccCCCceEeeh
Q psy7226 61 ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~ 78 (279)
..++-+|++|+|||+...
T Consensus 25 ~~~~i~G~~G~GKTtl~~ 42 (230)
T PRK08533 25 SLILIEGDESTGKSILSQ 42 (230)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 367788999999997643
No 416
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=36.74 E-value=8.2 Score=35.00 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=11.2
Q ss_pred hcccCCCceEeeh
Q psy7226 66 YGQTGGGKTYTVS 78 (279)
Q Consensus 66 YG~tgSGKTyTm~ 78 (279)
.|+.|||||++|-
T Consensus 37 lG~NGAGKTTllk 49 (293)
T COG1131 37 LGPNGAGKTTLLK 49 (293)
T ss_pred ECCCCCCHHHHHH
Confidence 4999999998864
No 417
>PHA02774 E1; Provisional
Probab=36.67 E-value=10 Score=37.96 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=21.9
Q ss_pred HHhhhcc--hhhhhhhhcccCCCceEeehHHHH
Q psy7226 52 INHMFNG--INATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 52 v~~~l~G--~n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
+..++.| +..|++-||+.|+||||-...|+-
T Consensus 424 lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~ 456 (613)
T PHA02774 424 LKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIK 456 (613)
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 3444444 335899999999999987665543
No 418
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=36.62 E-value=14 Score=34.14 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=24.4
Q ss_pred hhHHhHHhhhc--chh--hhhhhhcccCCCceEeeh
Q psy7226 47 VLVPLINHMFN--GIN--ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 47 ~~~plv~~~l~--G~n--~~i~aYG~tgSGKTyTm~ 78 (279)
+..+-+|.++. |+. ..+.-||++|||||..+.
T Consensus 38 TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL 73 (321)
T TIGR02012 38 TGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLAL 73 (321)
T ss_pred CCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHH
Confidence 35788888885 554 356789999999997654
No 419
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=36.57 E-value=15 Score=39.97 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=19.4
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceE
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTY 75 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTy 75 (279)
...+..++.|.+.. +.++||||||.
T Consensus 84 ~~~i~~il~G~d~v--i~ApTGsGKT~ 108 (1171)
T TIGR01054 84 KMWAKRVLRGDSFA--IIAPTGVGKTT 108 (1171)
T ss_pred HHHHHHHhCCCeEE--EECCCCCCHHH
Confidence 45667788998765 55699999995
No 420
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=36.43 E-value=9.4 Score=36.72 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=17.7
Q ss_pred hhhhhhhcccCCCceEeehHHHH
Q psy7226 60 NATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
...++..|.+|+|||.|...+..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 34677889999999998765543
No 421
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=36.32 E-value=14 Score=33.92 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=22.7
Q ss_pred hhHHhHHhhhcc-hh--hhhhhhcccCCCceEeeh
Q psy7226 47 VLVPLINHMFNG-IN--ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 47 ~~~plv~~~l~G-~n--~~i~aYG~tgSGKTyTm~ 78 (279)
+.-+-+|.++.| .. ..+.-||+.|||||.-+.
T Consensus 80 TG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~l 114 (313)
T TIGR02238 80 TGSQALDGILGGGIESMSITEVFGEFRCGKTQLSH 114 (313)
T ss_pred CCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHH
Confidence 346778888875 22 345689999999997543
No 422
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=36.24 E-value=13 Score=38.78 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=18.1
Q ss_pred hhhcccCCCceEeehHHHHHHHHHH
Q psy7226 64 LAYGQTGGGKTYTVSAMIMKTLQHV 88 (279)
Q Consensus 64 ~aYG~tgSGKTyTm~Gii~r~l~~l 88 (279)
+.+|+||+|||..|.=++.++.+.-
T Consensus 440 ~I~G~tGaGKTvLl~~llaq~~k~~ 464 (796)
T COG3451 440 LIIGPTGAGKTVLLSFLLAQALKYG 464 (796)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhc
Confidence 4469999999988776655555544
No 423
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=36.21 E-value=10 Score=26.23 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=9.5
Q ss_pred hhcccCCCceEe
Q psy7226 65 AYGQTGGGKTYT 76 (279)
Q Consensus 65 aYG~tgSGKTyT 76 (279)
-.|..|||||..
T Consensus 4 i~G~~gsGKst~ 15 (69)
T cd02019 4 ITGGSGSGKSTV 15 (69)
T ss_pred EECCCCCCHHHH
Confidence 359999999844
No 424
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=36.17 E-value=17 Score=38.16 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=28.0
Q ss_pred hHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHHH
Q psy7226 48 LVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQ 86 (279)
Q Consensus 48 ~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~ 86 (279)
+..++.-+..+.-..++-+|+.|+|||..+.|+..+...
T Consensus 196 i~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 196 IRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred HHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 455555444555556678899999999988888776643
No 425
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=36.15 E-value=13 Score=36.42 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=22.5
Q ss_pred hHHhHHhhhcc---hhhhhhhhcccCCCceEee
Q psy7226 48 LVPLINHMFNG---INATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 48 ~~plv~~~l~G---~n~~i~aYG~tgSGKTyTm 77 (279)
.-+-+|.++.| ....++.+|.+|+|||.-.
T Consensus 16 GI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~ 48 (509)
T PRK09302 16 GIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFA 48 (509)
T ss_pred CchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHH
Confidence 45567777764 4577888999999999653
No 426
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=36.15 E-value=9.9 Score=33.35 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=16.0
Q ss_pred hhhcccCCCceEeehHHHHHH
Q psy7226 64 LAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 64 ~aYG~tgSGKTyTm~Gii~r~ 84 (279)
.-.|.+|||||+.+..++++.
T Consensus 5 ~ivG~~gsGKTtl~~~l~~~L 25 (229)
T PRK14494 5 GVIGFKDSGKTTLIEKILKNL 25 (229)
T ss_pred EEECCCCChHHHHHHHHHHHH
Confidence 345889999998877776654
No 427
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=36.14 E-value=12 Score=31.42 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=13.6
Q ss_pred hcccCCCceEeehHHHHH
Q psy7226 66 YGQTGGGKTYTVSAMIMK 83 (279)
Q Consensus 66 YG~tgSGKTyTm~Gii~r 83 (279)
.|.+|||||..+.-|++.
T Consensus 12 vG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 12 AAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ECCCCChHHHHHHHHHHH
Confidence 499999999766655554
No 428
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=36.09 E-value=6.9 Score=33.37 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=13.5
Q ss_pred hhhhhcccCCCceEeeh
Q psy7226 62 TLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~ 78 (279)
++.-+|++|+|||..+.
T Consensus 24 ~~~i~G~NGsGKTTLl~ 40 (204)
T cd03240 24 LTLIVGQNGAGKTTIIE 40 (204)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 56678999999996543
No 429
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=35.90 E-value=8.9 Score=36.69 Aligned_cols=18 Identities=39% Similarity=0.625 Sum_probs=14.7
Q ss_pred hhhhhhcccCCCceEeeh
Q psy7226 61 ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~ 78 (279)
..|+-+|+||+|||+...
T Consensus 117 ~~iLL~GP~GsGKT~lAr 134 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQ 134 (413)
T ss_pred ceEEEECCCCcCHHHHHH
Confidence 468889999999996643
No 430
>PRK00300 gmk guanylate kinase; Provisional
Probab=35.83 E-value=11 Score=31.72 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=11.8
Q ss_pred hhhhhcccCCCceEe
Q psy7226 62 TLLAYGQTGGGKTYT 76 (279)
Q Consensus 62 ~i~aYG~tgSGKTyT 76 (279)
.|.-.|++|||||..
T Consensus 7 ~i~i~G~sGsGKstl 21 (205)
T PRK00300 7 LIVLSGPSGAGKSTL 21 (205)
T ss_pred EEEEECCCCCCHHHH
Confidence 355679999999953
No 431
>PRK14527 adenylate kinase; Provisional
Probab=35.77 E-value=11 Score=31.56 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.1
Q ss_pred hhhhhcccCCCceEee
Q psy7226 62 TLLAYGQTGGGKTYTV 77 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm 77 (279)
.|+.+|++|||||+..
T Consensus 8 ~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 8 VVIFLGPPGAGKGTQA 23 (191)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999653
No 432
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=35.48 E-value=8.7 Score=32.13 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=11.8
Q ss_pred hhhcccCCCceEeeh
Q psy7226 64 LAYGQTGGGKTYTVS 78 (279)
Q Consensus 64 ~aYG~tgSGKTyTm~ 78 (279)
.-.|++|||||+.+-
T Consensus 25 ~l~G~nG~GKSTLl~ 39 (176)
T cd03238 25 VVTGVSGSGKSTLVN 39 (176)
T ss_pred EEECCCCCCHHHHHH
Confidence 346999999997654
No 433
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=35.40 E-value=11 Score=32.02 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=11.3
Q ss_pred hhhhcccCCCceEee
Q psy7226 63 LLAYGQTGGGKTYTV 77 (279)
Q Consensus 63 i~aYG~tgSGKTyTm 77 (279)
|.-.|++|||||+.+
T Consensus 9 i~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 9 IGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999543
No 434
>KOG0651|consensus
Probab=35.33 E-value=12 Score=34.63 Aligned_cols=69 Identities=23% Similarity=0.347 Sum_probs=39.8
Q ss_pred eeEeeecccCCCCCCcceehhhhHHhHHhhh-c--chhh--hhhhhcccCCCceEeeh----------------------
Q psy7226 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMF-N--GINA--TLLAYGQTGGGKTYTVS---------------------- 78 (279)
Q Consensus 26 ~~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l-~--G~n~--~i~aYG~tgSGKTyTm~---------------------- 78 (279)
+.+.||.+-+-...-.++-+.+.-|++...+ - |... -++-||+.|+|||+-..
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 3456666654332223333333445554322 2 3322 25789999999998632
Q ss_pred -HHHHHHHHHHHHHcCc
Q psy7226 79 -AMIMKTLQHVMQRCNK 94 (279)
Q Consensus 79 -Gii~r~l~~lf~~~~~ 94 (279)
|=-.|.+++.|....+
T Consensus 207 iGEsaRlIRemf~yA~~ 223 (388)
T KOG0651|consen 207 IGESARLIRDMFRYARE 223 (388)
T ss_pred cccHHHHHHHHHHHHhh
Confidence 5566888888877655
No 435
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.33 E-value=11 Score=36.59 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=13.8
Q ss_pred hhhhhcccCCCceEeeh
Q psy7226 62 TLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~ 78 (279)
.++-||+.|+|||++..
T Consensus 38 ~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 38 AYIFAGPRGTGKTTVAR 54 (472)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999997644
No 436
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.32 E-value=14 Score=33.16 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=16.8
Q ss_pred hhhhhhcccCCCceEeehHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
-.+.-+|++|+|||.++..+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 4667789999999987665543
No 437
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=35.28 E-value=13 Score=32.59 Aligned_cols=14 Identities=50% Similarity=0.605 Sum_probs=10.4
Q ss_pred hhhcccCCCceEee
Q psy7226 64 LAYGQTGGGKTYTV 77 (279)
Q Consensus 64 ~aYG~tgSGKTyTm 77 (279)
+-+|+||+|||...
T Consensus 5 ~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 5 LIVGPTGTGKTALA 18 (233)
T ss_dssp EEE-STTSSHHHHH
T ss_pred EEECCCCCChhHHH
Confidence 45799999999763
No 438
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=35.23 E-value=8.8 Score=34.41 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=12.6
Q ss_pred hhhhhcccCCCceEee
Q psy7226 62 TLLAYGQTGGGKTYTV 77 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm 77 (279)
.|+..|..|||||+..
T Consensus 4 liil~G~pGSGKSTla 19 (300)
T PHA02530 4 IILTVGVPGSGKSTWA 19 (300)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3667899999999653
No 439
>PTZ00014 myosin-A; Provisional
Probab=35.15 E-value=12 Score=38.95 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=25.2
Q ss_pred eehhhhHHhHHhhh-cchhhhhhhhcccCCCceEeeh
Q psy7226 43 IFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 43 vf~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
||.-+ ......++ .+.|-||+.-|.+|||||.+.-
T Consensus 166 ifavA-~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK 201 (821)
T PTZ00014 166 VFTTA-RRALENLHGVKKSQTIIVSGESGAGKTEATK 201 (821)
T ss_pred HHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHHHH
Confidence 55443 33333444 5899999999999999998854
No 440
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=35.13 E-value=12 Score=35.79 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=43.9
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHHHHHHHHcCc---cchh-----hhHHHHhhhhhhhhcCCC
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQHVMQRCNK---DDVY-----MSYLQLYSEKCYDLLNGN 116 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~~lf~~~~~---~~v~-----vS~~EIy~E~v~DLL~~~ 116 (279)
..-++.+-+|....-|..|.=||||||.+.-+..++++.=|--..- -... --...+|.+-+..|-.+.
T Consensus 38 ~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~~fvvs~v~ls~e~~lh~~~g~~~~~Yr~l~~nL~t~~ 113 (416)
T PF10923_consen 38 DRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERALEKGFVVSEVDLSPERPLHGTGGQLEALYRELMRNLSTKT 113 (416)
T ss_pred HHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHcCCEEEEEecCCCcccccccccHHHHHHHHHHhcCCCC
Confidence 4446777789998899999999999998776655555544432211 0011 134567777777776543
No 441
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=35.09 E-value=11 Score=30.99 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=12.1
Q ss_pred hhhhhcccCCCceEe
Q psy7226 62 TLLAYGQTGGGKTYT 76 (279)
Q Consensus 62 ~i~aYG~tgSGKTyT 76 (279)
.|+..|++|||||+.
T Consensus 4 ~i~l~G~~gsGKst~ 18 (175)
T cd00227 4 IIILNGGSSAGKSSI 18 (175)
T ss_pred EEEEECCCCCCHHHH
Confidence 367779999999954
No 442
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=35.05 E-value=11 Score=34.52 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.1
Q ss_pred hhhhcccCCCceEeeh
Q psy7226 63 LLAYGQTGGGKTYTVS 78 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~ 78 (279)
|+-+|+|+||||....
T Consensus 6 i~I~GPTAsGKT~lai 21 (308)
T COG0324 6 IVIAGPTASGKTALAI 21 (308)
T ss_pred EEEECCCCcCHHHHHH
Confidence 5667999999998754
No 443
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=35.04 E-value=15 Score=32.28 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=23.7
Q ss_pred HHhHHhhhcchh---hhhhhhcccCCCceEeehHHHHHHH
Q psy7226 49 VPLINHMFNGIN---ATLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 49 ~plv~~~l~G~n---~~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
-+.++.++.|.. .+|++ |.+|.|||..+..++..++
T Consensus 6 ~~~LD~~lgG~~~g~L~vi~-a~pg~GKT~~~l~ia~~~a 44 (259)
T PF03796_consen 6 FPALDRLLGGLRPGELTVIA-ARPGVGKTAFALQIALNAA 44 (259)
T ss_dssp THHHHHHHSSB-TT-EEEEE-ESTTSSHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCcCcEEEEE-ecccCCchHHHHHHHHHHH
Confidence 356677776654 33444 9999999987766655444
No 444
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=34.98 E-value=15 Score=37.09 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=16.9
Q ss_pred hhhhhhcccCCCceEeehHHHHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
.+|++ |..|+|||+|+..++...+
T Consensus 169 ~~vIt-GgpGTGKTt~v~~ll~~l~ 192 (615)
T PRK10875 169 ISVIS-GGPGTGKTTTVAKLLAALI 192 (615)
T ss_pred eEEEE-eCCCCCHHHHHHHHHHHHH
Confidence 34444 8889999999876665443
No 445
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=34.96 E-value=9.4 Score=33.44 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=12.6
Q ss_pred hhhhcccCCCceEeeh
Q psy7226 63 LLAYGQTGGGKTYTVS 78 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~ 78 (279)
|+-.|..|||||+...
T Consensus 2 Ivl~G~pGSGKST~a~ 17 (249)
T TIGR03574 2 IILTGLPGVGKSTFSK 17 (249)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 5667999999997643
No 446
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=34.89 E-value=9.7 Score=36.59 Aligned_cols=17 Identities=41% Similarity=0.526 Sum_probs=14.0
Q ss_pred hhhhhhcccCCCceEee
Q psy7226 61 ATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm 77 (279)
.-|+.+|++|+|||+..
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35788999999999764
No 447
>KOG1547|consensus
Probab=34.86 E-value=16 Score=32.60 Aligned_cols=32 Identities=19% Similarity=0.425 Sum_probs=23.3
Q ss_pred hhhhHHhHHhhh-cchhhhhhhhcccCCCceEe
Q psy7226 45 TEVLVPLINHMF-NGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 45 ~~~~~plv~~~l-~G~n~~i~aYG~tgSGKTyT 76 (279)
+.++..+=..++ .|+.--||..||+|.|||..
T Consensus 30 dtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstl 62 (336)
T KOG1547|consen 30 DTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTL 62 (336)
T ss_pred HHHHHHHHHHHHhccCceEEEEEecCCCCchhh
Confidence 344444443444 69999999999999999954
No 448
>PRK10263 DNA translocase FtsK; Provisional
Probab=34.85 E-value=13 Score=40.57 Aligned_cols=23 Identities=48% Similarity=0.697 Sum_probs=18.2
Q ss_pred hhhhhcccCCCceEeehHHHHHH
Q psy7226 62 TLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
-++..|.||||||..+..||...
T Consensus 1012 HLLIAGaTGSGKSv~LntLIlSL 1034 (1355)
T PRK10263 1012 HLLVAGTTGSGKSVGVNAMILSM 1034 (1355)
T ss_pred cEEEecCCCCCHHHHHHHHHHHH
Confidence 35777999999999988776544
No 449
>KOG0328|consensus
Probab=34.82 E-value=19 Score=32.81 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=21.0
Q ss_pred HHhHHhhhcchhhhhhhhcccCCCceEee
Q psy7226 49 VPLINHMFNGINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 49 ~plv~~~l~G~n~~i~aYG~tgSGKTyTm 77 (279)
+..|..++.|.++ +|-.|+|+|||-|.
T Consensus 55 qrAi~~IlkGrdV--iaQaqSGTGKTa~~ 81 (400)
T KOG0328|consen 55 QRAIPQILKGRDV--IAQAQSGTGKTATF 81 (400)
T ss_pred hhhhhhhhcccce--EEEecCCCCceEEE
Confidence 3455667889986 67779999999874
No 450
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=34.76 E-value=22 Score=35.99 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=31.4
Q ss_pred EeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEeehHHHHHHHHHHH
Q psy7226 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQHVM 89 (279)
Q Consensus 28 f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~r~l~~lf 89 (279)
|.|..|.+ |+. +...++-.++++....|+-+|+.|+|||. +.+++..++
T Consensus 1 ~pf~~ivG----q~~----~~~al~~~av~~~~g~vli~G~~GtgKs~-----lar~l~~~l 49 (633)
T TIGR02442 1 FPFTAIVG----QED----LKLALLLNAVDPRIGGVLIRGEKGTAKST-----AARGLAALL 49 (633)
T ss_pred CCcchhcC----hHH----HHHHHHHHhhCCCCCeEEEEcCCCCcHHH-----HHHHHHHhC
Confidence 45666665 222 33555556666655669999999999994 455555554
No 451
>KOG0924|consensus
Probab=34.57 E-value=7.9 Score=39.31 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=17.2
Q ss_pred chhhhhhhhcccCCCceEeeh
Q psy7226 58 GINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 58 G~n~~i~aYG~tgSGKTyTm~ 78 (279)
+-|-.|+..|.||||||+-+.
T Consensus 369 r~n~vvvivgETGSGKTTQl~ 389 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQLA 389 (1042)
T ss_pred hhCcEEEEEecCCCCchhhhH
Confidence 556677788999999998764
No 452
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=34.42 E-value=6.2 Score=39.00 Aligned_cols=44 Identities=25% Similarity=0.545 Sum_probs=27.2
Q ss_pred eEeeecccCCCCCCcceehhhhHHhHHhhhcchhhhhhhhcccCCCceEe
Q psy7226 27 VFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYT 76 (279)
Q Consensus 27 ~f~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n~~i~aYG~tgSGKTyT 76 (279)
.|.||.+++.+.. ...+ ...+.. +...+..|+-+|.+||||++.
T Consensus 208 ~~~f~~iiG~S~~----m~~~-~~~i~~-~A~~~~pVLI~GE~GTGKe~l 251 (526)
T TIGR02329 208 RYRLDDLLGASAP----MEQV-RALVRL-YARSDATVLILGESGTGKELV 251 (526)
T ss_pred ccchhheeeCCHH----HHHH-HHHHHH-HhCCCCcEEEECCCCcCHHHH
Confidence 3777777755432 2221 222222 346678899999999999944
No 453
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=34.26 E-value=12 Score=34.38 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=12.4
Q ss_pred hhhhhcccCCCceEee
Q psy7226 62 TLLAYGQTGGGKTYTV 77 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm 77 (279)
.|+..|+||||||...
T Consensus 6 ~i~i~GptgsGKt~la 21 (307)
T PRK00091 6 VIVIVGPTASGKTALA 21 (307)
T ss_pred EEEEECCCCcCHHHHH
Confidence 3567799999999643
No 454
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=34.25 E-value=7.5 Score=37.37 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=17.4
Q ss_pred hhhhhhhcccCCCceEeehHHH
Q psy7226 60 NATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~Gii 81 (279)
...|+..|.+|+|||+|+.-|.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4567788999999999876443
No 455
>PRK01184 hypothetical protein; Provisional
Probab=34.24 E-value=9.7 Score=31.47 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=11.5
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
|+..|+.|||||+.
T Consensus 4 i~l~G~~GsGKsT~ 17 (184)
T PRK01184 4 IGVVGMPGSGKGEF 17 (184)
T ss_pred EEEECCCCCCHHHH
Confidence 45679999999973
No 456
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=34.19 E-value=13 Score=30.96 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=0.0
Q ss_pred hhcccCCCceEeehH
Q psy7226 65 AYGQTGGGKTYTVSA 79 (279)
Q Consensus 65 aYG~tgSGKTyTm~G 79 (279)
-+|+.|||||..+..
T Consensus 4 iiG~N~sGKS~il~a 18 (303)
T PF13304_consen 4 IIGPNGSGKSNILEA 18 (303)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 469999999987653
No 457
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=34.17 E-value=13 Score=38.87 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=18.8
Q ss_pred hhhhhhcccCCCceEeehHHHHHHH
Q psy7226 61 ATLLAYGQTGGGKTYTVSAMIMKTL 85 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~Gii~r~l 85 (279)
+-.+..|+||||||+.|.-|+....
T Consensus 489 gh~~I~G~tGsGKS~l~~~L~~~~~ 513 (852)
T PRK13891 489 GHTFMFGPTGAGKSTHLGIIAAQLR 513 (852)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457789999999998876655544
No 458
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.15 E-value=12 Score=34.88 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=13.8
Q ss_pred hhhhhcccCCCceEeeh
Q psy7226 62 TLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~ 78 (279)
+++-||+.|+|||.++.
T Consensus 40 ~~L~~Gp~G~GKTtla~ 56 (363)
T PRK14961 40 AWLLSGTRGVGKTTIAR 56 (363)
T ss_pred EEEEecCCCCCHHHHHH
Confidence 46788999999996643
No 459
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=34.10 E-value=17 Score=38.54 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=20.9
Q ss_pred hhHHhHHhhhcchhhhhhhhcccCCCceEeeh
Q psy7226 47 VLVPLINHMFNGINATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 47 ~~~plv~~~l~G~n~~i~aYG~tgSGKTyTm~ 78 (279)
++.+++.++-.+..--++..|+||||||-+..
T Consensus 459 aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val 490 (926)
T TIGR00580 459 AIEEIKADMESPRPMDRLVCGDVGFGKTEVAM 490 (926)
T ss_pred HHHHHHhhhcccCcCCEEEECCCCccHHHHHH
Confidence 34444444444544456888999999997643
No 460
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=34.10 E-value=8.4 Score=31.46 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=15.9
Q ss_pred hhhhhhhcccCCCceEeehHHH
Q psy7226 60 NATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~Gii 81 (279)
...|+-.|++|+|||.+..-++
T Consensus 14 g~gvLi~G~sG~GKStlal~L~ 35 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELI 35 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 4456777999999997654443
No 461
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=34.01 E-value=13 Score=38.90 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=18.9
Q ss_pred hhhhhhhcccCCCceEeehHHHHHH
Q psy7226 60 NATLLAYGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyTm~Gii~r~ 84 (279)
|.-.+..|+||||||..|.-++.+.
T Consensus 438 n~N~~I~G~sGsGKS~l~~~l~~~~ 462 (829)
T TIGR03783 438 NRNKFILGPSGSGKSFFTNHLVRQY 462 (829)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHH
Confidence 4556778999999999887665444
No 462
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=33.97 E-value=9.8 Score=32.51 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=13.1
Q ss_pred hhhhhcccCCCceEeehH
Q psy7226 62 TLLAYGQTGGGKTYTVSA 79 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~G 79 (279)
.+.-.|++|||||..|-.
T Consensus 30 ~~~i~G~NGsGKSTll~~ 47 (213)
T cd03279 30 LFLICGPTGAGKSTILDA 47 (213)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 344569999999976543
No 463
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=33.92 E-value=9.8 Score=36.80 Aligned_cols=42 Identities=29% Similarity=0.347 Sum_probs=24.5
Q ss_pred eeecccCCCCCCcceehhhhHHhHHhhhcchh-hhhhhhcccCCCceEeeh
Q psy7226 29 IFDNIFGPNDSNETIFTEVLVPLINHMFNGIN-ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 29 ~FD~Vf~~~a~Q~~vf~~~~~plv~~~l~G~n-~~i~aYG~tgSGKTyTm~ 78 (279)
.||.|++.+ .++..+...+-.|.- -+++-||+.|+|||.++.
T Consensus 15 ~~~diiGq~--------~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~ 57 (451)
T PRK06305 15 TFSEILGQD--------AVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLAR 57 (451)
T ss_pred CHHHhcCcH--------HHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHH
Confidence 466666533 223333333334543 346679999999997654
No 464
>KOG1514|consensus
Probab=33.84 E-value=13 Score=37.78 Aligned_cols=33 Identities=24% Similarity=0.456 Sum_probs=24.0
Q ss_pred HHhHHhhhc--chhhhhhhhcccCCCceEeehHHH
Q psy7226 49 VPLINHMFN--GINATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 49 ~plv~~~l~--G~n~~i~aYG~tgSGKTyTm~Gii 81 (279)
...++.+++ |-.+|+.--|..|||||.|+.+++
T Consensus 409 ~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm 443 (767)
T KOG1514|consen 409 EDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVM 443 (767)
T ss_pred HHHHHhhcCCCCCceeEEEecCCCCCceehHHHHH
Confidence 455555553 556677788999999999977554
No 465
>PF04310 MukB: MukB N-terminal; InterPro: IPR007406 This is the N-terminal region of MukB. MukB is involved in the segregation and condensation of prokaryotic chromosomes. MukE (IPR007385 from INTERPRO) along with MukF (IPR005582 from INTERPRO) interact with MukB in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side []. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif. In other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0007059 chromosome segregation, 0030261 chromosome condensation, 0009295 nucleoid; PDB: 1QHL_A 3EUK_H 3EUJ_A.
Probab=33.71 E-value=9 Score=33.09 Aligned_cols=16 Identities=44% Similarity=0.706 Sum_probs=12.6
Q ss_pred hcccCCCceEeehHHH
Q psy7226 66 YGQTGGGKTYTVSAMI 81 (279)
Q Consensus 66 YG~tgSGKTyTm~Gii 81 (279)
.|..|+|||.||.+.+
T Consensus 33 ~G~NGAGKsT~m~Af~ 48 (227)
T PF04310_consen 33 SGGNGAGKSTTMAAFI 48 (227)
T ss_dssp CCSTTCCHHHHHHHHH
T ss_pred ecCCCCcchhhHHHHH
Confidence 3778999999998543
No 466
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=33.58 E-value=13 Score=32.87 Aligned_cols=17 Identities=29% Similarity=0.669 Sum_probs=12.9
Q ss_pred hhcccCCCceEeehHHH
Q psy7226 65 AYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 65 aYG~tgSGKTyTm~Gii 81 (279)
.-|.+|||||..+.-|+
T Consensus 18 iIG~sGSGKT~li~~lL 34 (241)
T PF04665_consen 18 IIGKSGSGKTTLIKSLL 34 (241)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 34999999997765554
No 467
>PRK04863 mukB cell division protein MukB; Provisional
Probab=33.52 E-value=12 Score=41.56 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=15.2
Q ss_pred hhhhhcccCCCceEeehHHHH
Q psy7226 62 TLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gii~ 82 (279)
++.-.|++|+|||.+|-.|.+
T Consensus 29 ~~~l~G~NGaGKSTll~ai~~ 49 (1486)
T PRK04863 29 VTTLSGGNGAGKSTTMAAFVT 49 (1486)
T ss_pred eEEEECCCCCCHHHHHHHHHc
Confidence 334569999999988765433
No 468
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=33.37 E-value=16 Score=35.40 Aligned_cols=13 Identities=54% Similarity=0.716 Sum_probs=11.5
Q ss_pred hcccCCCceEeeh
Q psy7226 66 YGQTGGGKTYTVS 78 (279)
Q Consensus 66 YG~tgSGKTyTm~ 78 (279)
-|.||+|||-|+.
T Consensus 25 aGATGTGKTvTLq 37 (502)
T PF05872_consen 25 AGATGTGKTVTLQ 37 (502)
T ss_pred eccCCCCceehHH
Confidence 3999999999974
No 469
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=33.32 E-value=14 Score=31.40 Aligned_cols=14 Identities=29% Similarity=0.480 Sum_probs=11.1
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
.+-+|++|||||-.
T Consensus 27 ~~i~G~NGsGKS~i 40 (220)
T PF02463_consen 27 NVIVGPNGSGKSNI 40 (220)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 45679999999943
No 470
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=33.20 E-value=14 Score=34.50 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=22.9
Q ss_pred hhHHhHHhhhcc-h--hhhhhhhcccCCCceEeeh
Q psy7226 47 VLVPLINHMFNG-I--NATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 47 ~~~plv~~~l~G-~--n~~i~aYG~tgSGKTyTm~ 78 (279)
+.-+-+|.++.| . ...+.-||+.|||||.-+.
T Consensus 110 TG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~l 144 (344)
T PLN03187 110 TGSQALDELLGGGIETRCITEAFGEFRSGKTQLAH 144 (344)
T ss_pred CCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHH
Confidence 456778888875 2 2334588999999997543
No 471
>PRK00279 adk adenylate kinase; Reviewed
Probab=33.20 E-value=13 Score=31.82 Aligned_cols=14 Identities=36% Similarity=0.620 Sum_probs=11.9
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
|+.+|+.|||||..
T Consensus 3 I~v~G~pGsGKsT~ 16 (215)
T PRK00279 3 LILLGPPGAGKGTQ 16 (215)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999954
No 472
>KOG1532|consensus
Probab=33.11 E-value=15 Score=33.45 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=15.9
Q ss_pred hhhhhhhhcccCCCceEee
Q psy7226 59 INATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 59 ~n~~i~aYG~tgSGKTyTm 77 (279)
..+||+..|-.|||||.-|
T Consensus 18 ~p~~ilVvGMAGSGKTTF~ 36 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFM 36 (366)
T ss_pred CCcEEEEEecCCCCchhHH
Confidence 4578999999999999654
No 473
>PLN02200 adenylate kinase family protein
Probab=33.07 E-value=11 Score=33.11 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=12.8
Q ss_pred hhhhhcccCCCceEe
Q psy7226 62 TLLAYGQTGGGKTYT 76 (279)
Q Consensus 62 ~i~aYG~tgSGKTyT 76 (279)
.|+..|++|||||+-
T Consensus 45 ii~I~G~PGSGKsT~ 59 (234)
T PLN02200 45 ITFVLGGPGSGKGTQ 59 (234)
T ss_pred EEEEECCCCCCHHHH
Confidence 567889999999965
No 474
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=32.94 E-value=13 Score=34.22 Aligned_cols=16 Identities=38% Similarity=0.333 Sum_probs=12.1
Q ss_pred hhhhcccCCCceEeeh
Q psy7226 63 LLAYGQTGGGKTYTVS 78 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~ 78 (279)
++..++||||||.+..
T Consensus 2 vvi~apTGsGKT~~~~ 17 (358)
T TIGR01587 2 LVIEAPTGYGKTEAAL 17 (358)
T ss_pred EEEEeCCCCCHHHHHH
Confidence 3456899999997743
No 475
>COG1783 XtmB Phage terminase large subunit [General function prediction only]
Probab=32.87 E-value=28 Score=32.98 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=21.3
Q ss_pred hhhhhcccCCCceEeehHHHHHHHHHHHHHcCc
Q psy7226 62 TLLAYGQTGGGKTYTVSAMIMKTLQHVMQRCNK 94 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gii~r~l~~lf~~~~~ 94 (279)
..+++|+-||+|||+ +..-.+..+|..-..
T Consensus 26 ~~i~~G~rGS~KSy~---~alk~i~kl~~~~~~ 55 (414)
T COG1783 26 YFIAKGGRGSSKSYA---TALKNIEKLLSEPGI 55 (414)
T ss_pred EEEEEccCCCchhHH---HHHHHHHHHHcCCCC
Confidence 478999999999998 444455556655443
No 476
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.80 E-value=12 Score=33.36 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=11.4
Q ss_pred hhhcccCCCceEeeh
Q psy7226 64 LAYGQTGGGKTYTVS 78 (279)
Q Consensus 64 ~aYG~tgSGKTyTm~ 78 (279)
+-+|++|||||..+.
T Consensus 25 ~i~G~NGsGKS~ll~ 39 (270)
T cd03242 25 VLVGENAQGKTNLLE 39 (270)
T ss_pred EEECCCCCCHHHHHH
Confidence 356999999995443
No 477
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=32.78 E-value=8.6 Score=34.93 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=13.9
Q ss_pred hhhhhcccCCCceEeeh
Q psy7226 62 TLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~ 78 (279)
.|+-.|.+|||||..+.
T Consensus 8 ~i~i~G~~GsGKtt~~~ 24 (288)
T PRK05416 8 LVIVTGLSGAGKSVALR 24 (288)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 35677999999998765
No 478
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=32.70 E-value=12 Score=31.66 Aligned_cols=14 Identities=50% Similarity=0.738 Sum_probs=10.5
Q ss_pred hhhhhcccCCCceE
Q psy7226 62 TLLAYGQTGGGKTY 75 (279)
Q Consensus 62 ~i~aYG~tgSGKTy 75 (279)
+|+-.|+.|||||.
T Consensus 5 ~vlL~Gps~SGKTa 18 (181)
T PF09439_consen 5 TVLLVGPSGSGKTA 18 (181)
T ss_dssp EEEEE-STTSSHHH
T ss_pred eEEEEcCCCCCHHH
Confidence 46667999999993
No 479
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=32.69 E-value=11 Score=38.86 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=15.0
Q ss_pred hhhhhhcccCCCceEeeh
Q psy7226 61 ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~ 78 (279)
++++-+|++|+|||+...
T Consensus 489 ~~~Lf~GP~GvGKT~lAk 506 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTV 506 (758)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 567889999999997753
No 480
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=32.69 E-value=12 Score=36.37 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=18.0
Q ss_pred hhhhhhhhcccCCCceEeehHHH
Q psy7226 59 INATLLAYGQTGGGKTYTVSAMI 81 (279)
Q Consensus 59 ~n~~i~aYG~tgSGKTyTm~Gii 81 (279)
....|+.+|.+|+|||++...+.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA 276 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALA 276 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678889999999998866443
No 481
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=32.54 E-value=15 Score=34.57 Aligned_cols=16 Identities=31% Similarity=0.686 Sum_probs=14.0
Q ss_pred hhhhcccCCCceEeeh
Q psy7226 63 LLAYGQTGGGKTYTVS 78 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~ 78 (279)
++++|..|||||+++.
T Consensus 4 ~i~~GgrgSGKS~~~~ 19 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIA 19 (396)
T ss_pred EEEeCCCCcccHHHHH
Confidence 5688999999999976
No 482
>COG1162 Predicted GTPases [General function prediction only]
Probab=32.47 E-value=9.9 Score=34.72 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=21.7
Q ss_pred HhHHhhhcchhhhhhhhcccCCCceEeehHHHH
Q psy7226 50 PLINHMFNGINATLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 50 plv~~~l~G~n~~i~aYG~tgSGKTyTm~Gii~ 82 (279)
..+...+.|. .++|+ ||+|-|||.-+--|.|
T Consensus 156 ~~l~~~l~~~-~svl~-GqSGVGKSSLiN~L~p 186 (301)
T COG1162 156 EELAELLAGK-ITVLL-GQSGVGKSTLINALLP 186 (301)
T ss_pred HHHHHHhcCC-eEEEE-CCCCCcHHHHHHhhCc
Confidence 3445667777 56666 9999999976555544
No 483
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=32.45 E-value=8.6 Score=32.04 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=12.3
Q ss_pred hhhhcccCCCceEeeh
Q psy7226 63 LLAYGQTGGGKTYTVS 78 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~ 78 (279)
+...|++|||||+.+.
T Consensus 6 i~l~G~sGsGKSTl~~ 21 (176)
T PRK09825 6 YILMGVSGSGKSLIGS 21 (176)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4567999999996543
No 484
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=32.41 E-value=16 Score=38.20 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=17.7
Q ss_pred HhHHhhhcchhhhhhhhcccCCCceEee
Q psy7226 50 PLINHMFNGINATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 50 plv~~~l~G~n~~i~aYG~tgSGKTyTm 77 (279)
+-|-.++.-..++|++ |+||||||+-+
T Consensus 56 ~~i~~ai~~~~vvii~-getGsGKTTql 82 (845)
T COG1643 56 DEILKAIEQNQVVIIV-GETGSGKTTQL 82 (845)
T ss_pred HHHHHHHHhCCEEEEe-CCCCCChHHHH
Confidence 3333445555555555 99999999864
No 485
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=32.37 E-value=13 Score=32.73 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=10.5
Q ss_pred hcccCCCceEeehH
Q psy7226 66 YGQTGGGKTYTVSA 79 (279)
Q Consensus 66 YG~tgSGKTyTm~G 79 (279)
.|+.|||||+-+.+
T Consensus 2 iGpaGSGKTT~~~~ 15 (238)
T PF03029_consen 2 IGPAGSGKTTFCKG 15 (238)
T ss_dssp EESTTSSHHHHHHH
T ss_pred CCCCCCCHHHHHHH
Confidence 49999999954433
No 486
>PRK14528 adenylate kinase; Provisional
Probab=32.19 E-value=11 Score=31.56 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=12.1
Q ss_pred hhhhcccCCCceEee
Q psy7226 63 LLAYGQTGGGKTYTV 77 (279)
Q Consensus 63 i~aYG~tgSGKTyTm 77 (279)
|+..|++|||||+..
T Consensus 4 i~i~G~pGsGKtt~a 18 (186)
T PRK14528 4 IIFMGPPGAGKGTQA 18 (186)
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999998653
No 487
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=32.06 E-value=13 Score=30.78 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=11.2
Q ss_pred hhhhcccCCCceEe
Q psy7226 63 LLAYGQTGGGKTYT 76 (279)
Q Consensus 63 i~aYG~tgSGKTyT 76 (279)
++-.|++|||||.-
T Consensus 2 ~li~G~~~sGKS~~ 15 (169)
T cd00544 2 ILVTGGARSGKSRF 15 (169)
T ss_pred EEEECCCCCCHHHH
Confidence 45679999999954
No 488
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.05 E-value=28 Score=31.09 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=10.8
Q ss_pred hhcccCCCceEeeh
Q psy7226 65 AYGQTGGGKTYTVS 78 (279)
Q Consensus 65 aYG~tgSGKTyTm~ 78 (279)
-.|++|||||-.|.
T Consensus 26 i~G~nGsGKS~il~ 39 (276)
T cd03241 26 LTGETGAGKSILLD 39 (276)
T ss_pred EEcCCCCCHHHHHH
Confidence 34999999996544
No 489
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=31.92 E-value=15 Score=36.08 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=16.8
Q ss_pred hhcch-hhhhhhhcccCCCceEeeh
Q psy7226 55 MFNGI-NATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 55 ~l~G~-n~~i~aYG~tgSGKTyTm~ 78 (279)
+..|. .-.++-||+.|+|||.+..
T Consensus 37 i~~~ri~~a~Lf~Gp~G~GKTT~Ar 61 (507)
T PRK06645 37 ILNDRLAGGYLLTGIRGVGKTTSAR 61 (507)
T ss_pred HHcCCCCceEEEECCCCCCHHHHHH
Confidence 33444 2357788999999997643
No 490
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=31.84 E-value=10 Score=32.07 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=11.8
Q ss_pred hhhcccCCCceEeeh
Q psy7226 64 LAYGQTGGGKTYTVS 78 (279)
Q Consensus 64 ~aYG~tgSGKTyTm~ 78 (279)
.-.|++|||||..+.
T Consensus 26 ~i~G~nGsGKStll~ 40 (197)
T cd03278 26 AIVGPNGSGKSNIID 40 (197)
T ss_pred EEECCCCCCHHHHHH
Confidence 456999999996654
No 491
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=31.71 E-value=18 Score=36.60 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=14.7
Q ss_pred hhhhhhcccCCCceEee
Q psy7226 61 ATLLAYGQTGGGKTYTV 77 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm 77 (279)
.-++++|+||||||..+
T Consensus 176 ~HvlviapTgSGKgvg~ 192 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGL 192 (636)
T ss_pred ceEEEEecCCCCCceEE
Confidence 44788999999999987
No 492
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=31.69 E-value=13 Score=28.00 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=10.3
Q ss_pred hhhcccCCCceEe
Q psy7226 64 LAYGQTGGGKTYT 76 (279)
Q Consensus 64 ~aYG~tgSGKTyT 76 (279)
.-.|.+|+|||..
T Consensus 3 ~iiG~~~~GKSTl 15 (116)
T PF01926_consen 3 AIIGRPNVGKSTL 15 (116)
T ss_dssp EEEESTTSSHHHH
T ss_pred EEECCCCCCHHHH
Confidence 4569999999954
No 493
>PHA02558 uvsW UvsW helicase; Provisional
Probab=31.62 E-value=21 Score=34.93 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=18.8
Q ss_pred hHHhhhcchhhhhhhhcccCCCceEeehHH
Q psy7226 51 LINHMFNGINATLLAYGQTGGGKTYTVSAM 80 (279)
Q Consensus 51 lv~~~l~G~n~~i~aYG~tgSGKTyTm~Gi 80 (279)
.|..++.+.++ +...+||+|||.++..+
T Consensus 122 av~~~l~~~~~--il~apTGsGKT~i~~~l 149 (501)
T PHA02558 122 AVYEGLKNNRR--LLNLPTSAGKSLIQYLL 149 (501)
T ss_pred HHHHHHhcCce--EEEeCCCCCHHHHHHHH
Confidence 45555666554 55689999999765443
No 494
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=31.58 E-value=11 Score=31.36 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=11.4
Q ss_pred hhhcccCCCceEeeh
Q psy7226 64 LAYGQTGGGKTYTVS 78 (279)
Q Consensus 64 ~aYG~tgSGKTyTm~ 78 (279)
.-.|.+|||||+...
T Consensus 3 ~i~G~sgsGKttla~ 17 (179)
T cd02028 3 GIAGPSGSGKTTFAK 17 (179)
T ss_pred EEECCCCCCHHHHHH
Confidence 345999999996543
No 495
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=31.54 E-value=14 Score=33.57 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=12.2
Q ss_pred hhhhcccCCCceEeeh
Q psy7226 63 LLAYGQTGGGKTYTVS 78 (279)
Q Consensus 63 i~aYG~tgSGKTyTm~ 78 (279)
|+..|+||||||....
T Consensus 2 i~i~G~t~~GKs~la~ 17 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAI 17 (287)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4567999999996533
No 496
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=31.50 E-value=11 Score=30.10 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=15.8
Q ss_pred hhhhhcccCCCceEeehHHHH
Q psy7226 62 TLLAYGQTGGGKTYTVSAMIM 82 (279)
Q Consensus 62 ~i~aYG~tgSGKTyTm~Gii~ 82 (279)
.|+-.|..|+|||..+.|+..
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~ 44 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQ 44 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 467789999999976555543
No 497
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=31.43 E-value=11 Score=38.66 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=14.0
Q ss_pred hhhhhhcccCCCceEeeh
Q psy7226 61 ATLLAYGQTGGGKTYTVS 78 (279)
Q Consensus 61 ~~i~aYG~tgSGKTyTm~ 78 (279)
+.++-+|++|+|||++..
T Consensus 485 ~~~lf~Gp~GvGKT~lA~ 502 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELAK 502 (731)
T ss_pred eeEEEECCCCccHHHHHH
Confidence 356778999999996543
No 498
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=31.42 E-value=12 Score=32.51 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=12.0
Q ss_pred hhhcccCCCceEeeh
Q psy7226 64 LAYGQTGGGKTYTVS 78 (279)
Q Consensus 64 ~aYG~tgSGKTyTm~ 78 (279)
.-.|+.|||||..|.
T Consensus 27 ~i~GpNGsGKStll~ 41 (243)
T cd03272 27 VVVGRNGSGKSNFFA 41 (243)
T ss_pred EEECCCCCCHHHHHH
Confidence 356999999997755
No 499
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=31.26 E-value=22 Score=29.43 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=13.6
Q ss_pred hcccCCCceEeehHHHHHH
Q psy7226 66 YGQTGGGKTYTVSAMIMKT 84 (279)
Q Consensus 66 YG~tgSGKTyTm~Gii~r~ 84 (279)
.|..+||||..+.-|+++.
T Consensus 8 vG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 8 VGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred EecCCCChhhHHHHHHHHH
Confidence 4899999997655555443
No 500
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=31.16 E-value=13 Score=32.88 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=13.7
Q ss_pred hhhhhhhcccCCCceEe
Q psy7226 60 NATLLAYGQTGGGKTYT 76 (279)
Q Consensus 60 n~~i~aYG~tgSGKTyT 76 (279)
..+++-+|++|+|||.-
T Consensus 36 gs~~lI~G~pGtGKT~l 52 (259)
T TIGR03878 36 YSVINITGVSDTGKSLM 52 (259)
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 35677889999999954
Done!