RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7226
(279 letters)
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 95.4 bits (236), Expect = 3e-23
Identities = 57/228 (25%), Positives = 90/228 (39%), Gaps = 11/228 (4%)
Query: 22 FFDHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMI 81
+ ++Q F FD F SNE ++ PL+ +F G AT AYGQTG GKT+T+ +
Sbjct: 76 YLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDL 135
Query: 82 MKTLQHVMQRCNKDDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQR-VQGPPD 140
Q+ + +L + N + + F I +
Sbjct: 136 SGKSQNASKGIYAMASRDVFLLKNQPRYR-----NLNLEVYVTFFEIYNGKVFDLLNKKA 190
Query: 141 PQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIY 200
L + + +++I G+ + + T N+ SSRSH I
Sbjct: 191 KLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQIL 250
Query: 201 LG----AMAKLHLVDLAGSEQL-FSLSDNYLLRNEARKINLSLHYLEQ 243
L K LVDLAG+E+ + S + R E +IN SL L++
Sbjct: 251 LRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKE 298
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 90.8 bits (224), Expect = 1e-21
Identities = 66/253 (26%), Positives = 116/253 (45%), Gaps = 50/253 (19%)
Query: 24 DHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV------ 77
+ + FD +FG + ++ V+ P+++ + G N T+ AYGQTG GKT+T+
Sbjct: 45 SRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSP 104
Query: 78 -----------SAMIMKTLQHVMQRCNKDD----VYMSYLQLYSEKCYDLLNGNKEVTLK 122
+ +I +TL + ++ + V +S L++Y+E+ +DLLN + +V+ +
Sbjct: 105 NEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSER 164
Query: 123 NWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTA 182
+F+ P++ + V L + + + Q++ G + TA
Sbjct: 165 LQMFDDPRNKRGVI-----------------IKGLEEITVHNKDEVYQILEKGAAKRTTA 207
Query: 183 VTKMNAQSSRSHTICTIYLGAM------------AKLHLVDLAGSEQLFSLSDNYLLRNE 230
T MNA SSRSH++ ++ + KL+LVDLAGSE + E
Sbjct: 208 ATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRARE 267
Query: 231 ARKINLSLHYLEQ 243
A IN SL L +
Sbjct: 268 AGNINQSLLTLGR 280
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 89.6 bits (221), Expect = 2e-21
Identities = 62/242 (25%), Positives = 100/242 (41%), Gaps = 46/242 (19%)
Query: 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV-------- 77
+ + FD +F + S E ++ + ++ + G N T+ AYGQT GKT+T+
Sbjct: 42 KPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPE 101
Query: 78 -------SAMIMKTLQHVMQRCNKDDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQ 130
+ + M + + +SY ++Y +K DLL+ +K +
Sbjct: 102 GMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKT---NLSVHEDKN 158
Query: 131 SDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQS 190
V+G T + + S + + I G N+ AVT MN S
Sbjct: 159 RVPYVKGC-------------------TERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHS 199
Query: 191 SRSHTICTIYL---------GAMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYL 241
SRSH+I I + KL+LVDLAGSE++ + +EA+ IN SL L
Sbjct: 200 SRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSAL 259
Query: 242 EQ 243
Sbjct: 260 GN 261
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 88.1 bits (217), Expect = 7e-21
Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 48/247 (19%)
Query: 22 FFDHQVFIFDNIFGPNDSNETIFTEVLVPLINHMF-NGINATLLAYGQTGGGKTYTV--- 77
+ + FI D +F N T++ + PLI ++ NG + AYGQTG GKTYT+
Sbjct: 46 YIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGS 105
Query: 78 --------------SAMIMKTLQHVMQRCNKDDVYMSYLQLYSEKCYDLLNGNKEVTLKN 123
+A + T ++ + N +++S+ ++Y K YDLL K
Sbjct: 106 QPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQ-------KR 158
Query: 124 WIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAV 183
+ ++ ++ D + + ++ G + V
Sbjct: 159 KMVAALENGKKEVVVKDLKILRVLTKEEL----------------ILKMIDGVLLRKIGV 202
Query: 184 TKMNAQSSRSHTICTIYLGA------MAKLHLVDLAGSEQL-FSLSDNYLLRNEARKINL 236
N +SSRSH I I L + K+ +DLAGSE+ ++S N + + IN
Sbjct: 203 NSQNDESSRSHAILNIDLKDINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINR 262
Query: 237 SLHYLEQ 243
SL L++
Sbjct: 263 SLLALKE 269
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 85.8 bits (211), Expect = 8e-20
Identities = 60/230 (26%), Positives = 97/230 (42%), Gaps = 19/230 (8%)
Query: 25 HQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSAMI--M 82
F FD +F + IF + P ++ + NG N T+ AYGQTG GK+YT+
Sbjct: 45 QGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDD 104
Query: 83 KTLQHVMQRCNKDDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQGPPDPQ 142
+ V+ R + ++ S L + Y + E+ ++ + + + +
Sbjct: 105 PDGRGVIPRIVE-QIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKN 163
Query: 143 TGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTICTIYL- 201
G G L + S+ +++ G + A T MN +SSRSH+I I +
Sbjct: 164 RGVYVKG-------LLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITIT 216
Query: 202 --------GAMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQ 243
+L LVDLAGSE++ + EA+KIN SL L
Sbjct: 217 QKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGM 266
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 78.5 bits (192), Expect = 2e-17
Identities = 65/256 (25%), Positives = 103/256 (40%), Gaps = 57/256 (22%)
Query: 24 DHQVFIFDNIFGPND--------SNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTY 75
+ F FD + + S + ++ ++ ++ H F G N + AYGQTG GK+Y
Sbjct: 43 TPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSY 102
Query: 76 TVSAMIMKTLQHVMQRCNKDD---------------VYMSYLQLYSEKCYDLLNGNKEVT 120
T+ K Q ++ + +D V +SY+++Y E+ DLLN
Sbjct: 103 TMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLN------ 156
Query: 121 LKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKV 180
P++ ++ P G L+ + S N L+ +GN+ +
Sbjct: 157 --------PKNKGNLRVREHPL-------LGPYVEDLSKLAVTSYNDIQDLMDSGNKPRT 201
Query: 181 TAVTKMNAQSSRSHTICTIYL-------------GAMAKLHLVDLAGSEQLFSLSDNYLL 227
A T MN SSRSH + I ++K+ LVDLAGSE+ S
Sbjct: 202 VAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTR 261
Query: 228 RNEARKINLSLHYLEQ 243
E IN SL L +
Sbjct: 262 LKEGANINKSLTTLGK 277
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 74.7 bits (182), Expect = 5e-16
Identities = 65/236 (27%), Positives = 98/236 (41%), Gaps = 33/236 (13%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTVSA----MIMK 83
F FD IF D+N +F EV L+ +G N + AYGQTG GKT+T+ +I
Sbjct: 52 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 110
Query: 84 TLQHVMQRCNKD-------DVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQRVQ 136
T+ H+ NK V ++++Y+E DLL + + +
Sbjct: 111 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSD------------NNNKEDTS 158
Query: 137 GPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRSHTI 196
+ + ++T KL+S ++ N+ + TA T N SS SH+I
Sbjct: 159 IGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSI 218
Query: 197 CTIYLGAM---------AKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQ 243
I+L L+LVDLAGSE++ E + IN SL L
Sbjct: 219 FIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGD 274
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 73.9 bits (180), Expect = 1e-15
Identities = 58/239 (24%), Positives = 95/239 (39%), Gaps = 41/239 (17%)
Query: 26 QVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV------SA 79
+ ++D +F N + + +F + L+ +G N + AYGQTG GKT+T+
Sbjct: 42 KQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPG 100
Query: 80 MIMKTLQHVMQRCNKDD------VYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQSDQ 133
+ + + + + KD + ++LY + DLL
Sbjct: 101 LTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPK------------QAKRL 148
Query: 134 RVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQSSRS 193
++ D + + TV + + +I G+E + T T MN QSSRS
Sbjct: 149 KLDIKKDSKGMVSVENV-------TVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRS 201
Query: 194 HTICTIYL---------GAMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQ 243
H I ++ + A KL VDLAGSE++ EA+ IN SL L
Sbjct: 202 HLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGD 260
Score = 26.1 bits (56), Expect = 5.1
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 231 ARKINLSLHYLEQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEE 275
R I +E + K+ +++ G+K ++E EE ++
Sbjct: 319 VRSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQD 363
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 69.6 bits (169), Expect = 3e-14
Identities = 64/242 (26%), Positives = 96/242 (39%), Gaps = 47/242 (19%)
Query: 24 DHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYTV------ 77
Q+F FD +F P S IF E++ PLI +G N + AYGQTG GKTYT+
Sbjct: 90 GQQIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES 148
Query: 78 SAMIMKTLQHVMQRCNK-------DDVYMSYLQLYSEKCYDLLNGNKEVTLKNWIFNIPQ 130
+I +T+ + ++ ++L++Y+E YDLL+ ++ N
Sbjct: 149 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 208
Query: 131 SDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENKVTAVTKMNAQS 190
+ N L+ T N+ TA T N +S
Sbjct: 209 DIYVSNITEETV--------------------LDPNHLRHLMHTAKMNRATASTAGNERS 248
Query: 191 SRSHTICTIYL---------GAMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSLHYL 241
SRSH + + L ++ ++LVDLAGSE E + IN SL L
Sbjct: 249 SRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSES----PKTSTRMTETKNINRSLSEL 304
Query: 242 EQ 243
Sbjct: 305 TN 306
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 31.2 bits (71), Expect = 0.11
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 240 YLEQEEEEEKGKEEEEEEEKKKGKKKKEKEEEE 272
Y + ++E++K +EKK+ + ++EK EE+
Sbjct: 100 YFQLQKEQKKQL---TSQEKKQIRLEREKFEED 129
Score = 26.2 bits (58), Expect = 4.5
Identities = 5/28 (17%), Positives = 17/28 (60%)
Query: 252 EEEEEEEKKKGKKKKEKEEEEKEENLVK 279
+ ++E++K+ ++K++ E+E+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 30.5 bits (69), Expect = 0.16
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 240 YLEQEEEEEKGKEEEEEEEKKKGKKKKEKEEEE 272
Y + + E +++ +EEK K K++ EK +E
Sbjct: 108 YFKAQTEA---RKQMSKEEKLKIKEENEKLLKE 137
Score = 26.6 bits (59), Expect = 2.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 252 EEEEEEEKKKGKKKKEKEEEEKEENLVK 279
+ + E K+ K++K K +EE E+ L +
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 29.5 bits (66), Expect = 0.25
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 228 RNEARKINLSLHYLEQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEEN 276
EA + E E E + EE K K+K ++ E +EN
Sbjct: 60 YQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKEN 108
Score = 28.3 bits (63), Expect = 0.63
Identities = 4/35 (11%), Positives = 16/35 (45%)
Query: 241 LEQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEE 275
+++ ++ +E E ++ +E+++ E
Sbjct: 94 AKEKLAQKMESNKENREAHLAAMLERLQEKDKHAE 128
Score = 27.5 bits (61), Expect = 0.92
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 230 EARKINLSLHYLEQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEEN 276
I ++ L Q+ E K E + ++K+K EE +N
Sbjct: 87 NNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN 133
Score = 27.2 bits (60), Expect = 1.5
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 242 EQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEE 275
+ E +E + ++ +K K EE K +
Sbjct: 101 KMESNKENREAHLAAMLERLQEKDKHAEEVRKNK 134
Score = 26.0 bits (57), Expect = 3.5
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 243 QEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEE 275
+E +++ EE + ++ K E+ E E
Sbjct: 45 EEIQKKLEAAEERRKYQEAELLKHLAEKREHER 77
Score = 25.6 bits (56), Expect = 5.2
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 226 LLRNEARKINLSLHYLEQEEEEEKGKEEEEEEEKKKGKKKK----EKEEEEKE 274
N + L + +E + E+ + K K K +E KE
Sbjct: 86 ENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 24.8 bits (54), Expect = 7.9
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 242 EQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEENLVK 279
+E+ +K + +E E + +E++K V+
Sbjct: 94 AKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVR 131
Score = 24.8 bits (54), Expect = 8.7
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 241 LEQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEEN 276
EE K +E+ +K K+ +E
Sbjct: 82 KAIEENNNFIKMAKEKLAQKMESNKENREAHLAAML 117
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 28.7 bits (64), Expect = 0.58
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 60 NATLLAYGQTGGGKTYTVSAMIMKTLQHVMQRCNKDDVYMSYLQLYSEKCYDLLNG 115
+L G++G GK ++ + + + R + V ++ + + L G
Sbjct: 23 ECPVLITGESGVGKE-----VVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFG 73
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 28.8 bits (63), Expect = 0.73
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 28 FIFDNIFGPNDSNETIFTEVLVPLINHMFNGIN---ATLLAYGQTGGGKTYTVSAMIMKT 84
+I + I D + + L+ N ++L G GKT + + ++
Sbjct: 6 YIMNGIIKWGDPVTRVL-DDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 64
Query: 85 LQHVMQRCNKDDVYMSY 101
++ C+ D +
Sbjct: 65 NFPFIKICSPDKMIGFS 81
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 28.4 bits (63), Expect = 0.82
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 247 EEKGKEEEEEEEKKKGKKKKEKEEEEK 273
+E K E EE+ ++ K KEK E+E+
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 26.1 bits (57), Expect = 5.9
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 242 EQEEEEEKGKEEEEEEEKKK 261
E EE+ + K +E+ EK++
Sbjct: 312 ETEEKMRRAKLAKEKAEKER 331
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 27.7 bits (61), Expect = 1.4
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 242 EQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEENLVK 279
+ E+ + + E E + ++EK + + EE VK
Sbjct: 77 KPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
Score = 26.5 bits (58), Expect = 3.2
Identities = 5/34 (14%), Positives = 14/34 (41%)
Query: 242 EQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEE 275
+ + E+ +E E + E+E+ + +
Sbjct: 75 QPKPEQIAKGQEIVESLNETELLVDEEEKAQNDS 108
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 27.0 bits (58), Expect = 1.5
Identities = 13/74 (17%), Positives = 16/74 (21%), Gaps = 1/74 (1%)
Query: 54 HMFNGINATLLAYGQTGGGKTYTVSAMIMKTLQHVMQRCNKDDVYMSYLQLYSEKCYDLL 113
HM T+L G GKT I+ R L E + L
Sbjct: 2 HMLKKGMTTVLD-FHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLD 60
Query: 114 NGNKEVTLKNWIFN 127
Sbjct: 61 VKFHTQAFSAHGSG 74
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 27.8 bits (60), Expect = 1.6
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 21 LFFDHQVF----IFDNIFGPNDSNETIFTEVLVPLIN-HMFNGINATLLAYGQTGGGKTY 75
LF D +VF I + E + L L++ + +N + G+ G GKT
Sbjct: 2 LFKDRRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTT 61
Query: 76 TVSAMI 81
+
Sbjct: 62 LAKFTV 67
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 27.3 bits (60), Expect = 1.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 246 EEEKGKEEEEEEEKKKGKKKKEKEEEEKEE 275
+ EK +EE EE+ K K EE+ E
Sbjct: 213 DPEKATQEEVEEKNILEKVKAAMTEEDLAE 242
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 27.4 bits (60), Expect = 2.0
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 242 EQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEE 275
EQE +E+E+ K+ +K+ + E ++
Sbjct: 262 EQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 295
Score = 26.6 bits (58), Expect = 3.0
Identities = 6/36 (16%), Positives = 19/36 (52%)
Query: 242 EQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEENL 277
+ +E+E+ + +E+++ K+ +KE + +
Sbjct: 258 QLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEI 293
Score = 26.6 bits (58), Expect = 3.4
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 224 NYLLRNEARKINLSLHYLEQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEE 275
L + + + +E K E+ E ++ + K++E+ K +
Sbjct: 221 KMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQ 272
Score = 25.9 bits (56), Expect = 6.2
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 227 LRNEARKINLSLHYLEQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKE 274
L+ K+ L +E+E + +E+E+ K +KE + E
Sbjct: 245 LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNE 292
Score = 25.9 bits (56), Expect = 6.2
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 241 LEQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEE 275
+E + + ++E K + +++ KE +KE
Sbjct: 252 MENDRVQLLKEQERTLALKLQEQEQLLKEGFQKES 286
Score = 25.5 bits (55), Expect = 8.1
Identities = 7/36 (19%), Positives = 20/36 (55%)
Query: 242 EQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEENL 277
+ E++E+ +E ++ +K + + + +E+E L
Sbjct: 232 QMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTL 267
Score = 25.5 bits (55), Expect = 8.2
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 242 EQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEENLVK 279
E+ E + +E+E +++E+ +E + +
Sbjct: 250 EKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESR 287
Score = 25.5 bits (55), Expect = 9.0
Identities = 5/36 (13%), Positives = 19/36 (52%)
Query: 241 LEQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEEN 276
L ++ E ++ + +E+E K +++++ ++
Sbjct: 248 LTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQ 283
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC
{Escherichia coli [TaxId: 562]}
Length = 129
Score = 26.0 bits (57), Expect = 3.0
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 19 IWLFFDHQVFIFDNIFGPNDSNETIFTEVLVPLINHMFNGI 59
+ F + + + I +L L H+ GI
Sbjct: 49 GTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGI 89
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 27.1 bits (59), Expect = 3.1
Identities = 9/65 (13%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 211 DLAGSEQLFSLSDNYLLRNEARKINLSLHYLEQEEEEEKGKEEEEEEEKKKGKKKKEKEE 270
++ + + YLL + + L +E ++ K+++E+E + + K ++
Sbjct: 683 NVINGPEELYGTYEYLL-------GMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKD 735
Query: 271 EEKEE 275
+
Sbjct: 736 IWNTD 740
Score = 26.3 bits (57), Expect = 5.5
Identities = 5/45 (11%), Positives = 15/45 (33%)
Query: 227 LRNEARKINLSLHYLEQEEEEEKGKEEEEEEEKKKGKKKKEKEEE 271
L + ++ L L + ++ + + E + + E
Sbjct: 714 LLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEA 758
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 26.6 bits (58), Expect = 3.6
Identities = 8/49 (16%), Positives = 14/49 (28%)
Query: 226 LLRNEARKINLSLHYLEQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKE 274
L+ A + L E E + K ++ + EK
Sbjct: 7 LVTEYAMETKCDDVLLLLGMYLEFQYSFEMCLKCIKKEQPSHYKYHEKH 55
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga
maritima [TaxId: 2336]}
Length = 184
Score = 26.1 bits (57), Expect = 4.2
Identities = 14/105 (13%), Positives = 37/105 (35%), Gaps = 4/105 (3%)
Query: 179 KVTAVTKMNAQSSRSHTICTIYLGAMAKLHLVDLAGSEQLFSLSDNYLLRNEARKINLSL 238
K + + + + + + +RN R+I +
Sbjct: 79 KAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKI 138
Query: 239 HYLEQE----EEEEKGKEEEEEEEKKKGKKKKEKEEEEKEENLVK 279
++E E++ K E E ++ + +K ++ E K+E +++
Sbjct: 139 KEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIME 183
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 25.2 bits (55), Expect = 4.3
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 247 EEKGKEEEEEEEKKKGKKKKEKEEEEKEE 275
G +E E + K+ + EK E
Sbjct: 73 WNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 26.3 bits (56), Expect = 4.5
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 21 LFFDHQVF----IFDNIFGPNDSNETIFTEVLVPLINHMFNGINATLLAYGQTGGGKTYT 76
+ D VF + + + + +L + + + L G+ G GKT T
Sbjct: 2 IVVDDSVFSPSYVPKRLPHREQQLQQL-DILLGNWLRNPGHHYPRATL-LGRPGTGKTVT 59
Query: 77 VSAM 80
+ +
Sbjct: 60 LRKL 63
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 25.3 bits (54), Expect = 7.7
Identities = 32/221 (14%), Positives = 61/221 (27%), Gaps = 18/221 (8%)
Query: 63 LLAYGQTGGGKTYTVSAMIMKTLQHVMQRCNKDDV---YMSYLQLYSEKCYDLLNGNKEV 119
L GQ G GKT SA I + Q + + D + ++ +L D++
Sbjct: 35 FLLGGQPGSGKTSLRSA-IFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPY 93
Query: 120 TLKNWIFNIPQSDQRVQGPPDPQTGPASPGNGRSAASLTVKKLDSLNSAVQLIVTGNENK 179
+ + I + + T G T L + ++ V
Sbjct: 94 SNRMTEAIISRLSDQGYNLVIEGT-----GRTTDVPIQTATMLQAKGYETKMYVMAVPKI 148
Query: 180 VTAVTKMNAQSSRSHTICTI--YLGAMAKLHLVDLA---GSEQLFSLSDNYLLRNEARKI 234
+ + + R T+ D+ L +L L +
Sbjct: 149 NSYLGTIE----RYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYN 204
Query: 235 NLSLHYLEQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEE 275
+ E +E E+E + KE + +
Sbjct: 205 REGVKLYSSLETPSISPKETLEKELNRKVSGKEIQPTLERI 245
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 25.7 bits (55), Expect = 7.8
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 63 LLAYGQTGGGKTYTVSAMIMKTLQH 87
LL G TG GK+ + + L
Sbjct: 53 LLVNGATGTGKSVLLRELAYTGLLR 77
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 25.2 bits (54), Expect = 8.0
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 171 LIVTGNENKVTAVTKMNAQSSRSHTICTIYLGAMAKLHLVDLAGSEQLFSLSDNY 225
L+V + A T ++ G KL + D AG E+ S++ Y
Sbjct: 22 LLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAY 76
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
thermophilus [TaxId: 274]}
Length = 138
Score = 24.6 bits (53), Expect = 9.8
Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 20/98 (20%)
Query: 185 KMNAQSSRSHTICTIYLGAMAKLHLVDLAGSEQLFSLS----DNYLLRNEARKINLSLHY 240
+ + T+ + G G E++F L + R L++
Sbjct: 52 IRRNGFNTTFTVRKVSYGV----------GVERIFPLHSPLIQKIDIVQRGRARRAKLYF 101
Query: 241 LEQEEEEEKGKE--EEEEEEKKKGKKKKEKEEEEKEEN 276
+ +E + ++K+ + + E KEE
Sbjct: 102 IR----NLSDREIRRKLRADRKRIDQDRAAERAAKEEA 135
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 25.2 bits (54), Expect = 9.8
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 242 EQEEEEEKGKEEEEEEEKKKGKKKKEKEEEEKEEN 276
EE+ E + +++E+E++ +
Sbjct: 56 PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGD 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.130 0.362
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 969,329
Number of extensions: 44368
Number of successful extensions: 422
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 93
Length of query: 279
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,254,276
Effective search space: 244583820
Effective search space used: 244583820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.1 bits)