BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7227
(635 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/94 (68%), Positives = 73/94 (77%)
Query: 535 HKRPVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNP 594
HKRPVP KR+D VT+LFSGIVGF+ +C+ H +GAMKIV +LN LYT +D LTD +KNP
Sbjct: 1 HKRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNP 60
Query: 595 NVYKVETVGDKYMAVSGLPVSCQDHARCIARLAL 628
VYKVETVGDKYM VSGLP C HAR I LAL
Sbjct: 61 FVYKVETVGDKYMTVSGLPEPCIHHARSICHLAL 94
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 37/53 (69%), Gaps = 6/53 (11%)
Query: 460 ELEGEKQK------TDRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSR 506
E GEK K T R L SP+N DPQF E+RGPV+MKGK EPM+VWFLSR
Sbjct: 147 ETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSR 199
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/94 (67%), Positives = 72/94 (76%)
Query: 535 HKRPVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNP 594
HKRPVP KR+D VT+LFSGIVGF+ +C+ H +GAMKIV +LN LYT +D LTD +KNP
Sbjct: 2 HKRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNP 61
Query: 595 NVYKVETVGDKYMAVSGLPVSCQDHARCIARLAL 628
VYKVETV DKYM VSGLP C HAR I LAL
Sbjct: 62 FVYKVETVCDKYMTVSGLPEPCIHHARSICHLAL 95
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 44/72 (61%), Gaps = 11/72 (15%)
Query: 441 YKLTRNLEFLTDKLQQTYRELEGEKQK------TDRLLCSPDNEDPQFQFEYRGPVTMKG 494
Y L N LT + + T GEK K T R L SP+N DPQF E+RGPV+MKG
Sbjct: 134 YSLFGNTVNLTSRTETT-----GEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKG 188
Query: 495 KSEPMEVWFLSR 506
K EPM+VWFLSR
Sbjct: 189 KKEPMQVWFLSR 200
>pdb|2O09|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120
pdb|2O09|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120
pdb|2O0C|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To No
pdb|2O0C|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To No
pdb|2O0G|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To Co
pdb|2O0G|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To Co
pdb|3L6J|A Chain A, Structure Of Cinaciguat (Bay 58-2667) Bound To Nostoc
H-Nox Domain
pdb|3L6J|B Chain B, Structure Of Cinaciguat (Bay 58-2667) Bound To Nostoc
H-Nox Domain
pdb|3TF8|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120
pdb|3TF8|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120
pdb|3TF9|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 1 Atm Of Xenon
pdb|3TF9|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 1 Atm Of Xenon
pdb|3TFA|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 6 Atm Of Xenon
pdb|3TFA|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 6 Atm Of Xenon
Length = 189
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 105/200 (52%), Gaps = 22/200 (11%)
Query: 5 VYGFVNYALELLVLKTFGEETWEKINIFSVRICQLRSGAPGPENVWRGDVGENQFLVRQI 64
+YG VN A++ ++ K GE+TWE I G E++ + F+ +
Sbjct: 1 MYGLVNKAIQDMISKHHGEDTWEAIKQ-----------KAGLEDI-------DFFVGMEA 42
Query: 65 YEDEITYNLIGAAVGVLNIPANTILELFGKTFFEFCQDSGYDKILQVLGATPRDFLQVLN 124
Y D++TY+L+GAA VL PA +L FG+ + + + GY ++L G + +F++ N
Sbjct: 43 YSDDVTYHLVGAASEVLGKPAEELLIAFGEYWVTYTSEEGYGELLASAGDSLPEFME--N 100
Query: 125 LDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKTVASKLHNTE 184
LD LH +G +P +R P+F C T ++ LHY S R GL +V+G++ + + T+
Sbjct: 101 LDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLLHGLGKRF-QTK 159
Query: 185 VEVEILKTKEEC-DHVQFLI 203
VEV +E DH F I
Sbjct: 160 VEVTQTAFRETGEDHDIFSI 179
>pdb|3TFD|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant
pdb|3TFD|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant
pdb|3TFE|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant Under 6 Atm Of Xenon
pdb|3TFE|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant Under 6 Atm Of Xenon
Length = 189
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 22/200 (11%)
Query: 5 VYGFVNYALELLVLKTFGEETWEKINIFSVRICQLRSGAPGPENVWRGDVGENQFLVRQI 64
+YG VN A++ ++ K GE+TWE I G E++ + F+ +
Sbjct: 1 MYGLVNKAIQDMISKHHGEDTWEAIKQ-----------KAGLEDI-------DFFVGMEA 42
Query: 65 YEDEITYNLIGAAVGVLNIPANTILELFGKTFFEFCQDSGYDKILQVLGATPRDFLQVLN 124
Y D++TY+L+GAA VL PA L FG+ + + + GY ++L G + +F++ N
Sbjct: 43 YSDDVTYHLVGAASEVLGKPAEEWLIAFGEYWVTYTSEEGYGELLASAGDSLPEFME--N 100
Query: 125 LDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKTVASKLHNTE 184
LD LH +G +P +R P+F C T ++ LHY S R GL +V+G++ + + T+
Sbjct: 101 LDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLLHGLGKRF-QTK 159
Query: 185 VEVEILKTKEEC-DHVQFLI 203
VEV +E DH F I
Sbjct: 160 VEVTQTAFRETGEDHDIFSI 179
>pdb|3TFF|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L67w Mutant
pdb|3TFF|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L67w Mutant
Length = 189
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 104/200 (52%), Gaps = 22/200 (11%)
Query: 5 VYGFVNYALELLVLKTFGEETWEKINIFSVRICQLRSGAPGPENVWRGDVGENQFLVRQI 64
+YG VN A++ ++ K GE+TWE I G E++ + F+ +
Sbjct: 1 MYGLVNKAIQDMISKHHGEDTWEAIKQ-----------KAGLEDI-------DFFVGMEA 42
Query: 65 YEDEITYNLIGAAVGVLNIPANTILELFGKTFFEFCQDSGYDKILQVLGATPRDFLQVLN 124
Y D++TY+L+GAA VL PA + FG+ + + + GY ++L G + +F++ N
Sbjct: 43 YSDDVTYHLVGAASEVLGKPAEELWIAFGEYWVTYTSEEGYGELLASAGDSLPEFME--N 100
Query: 125 LDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKTVASKLHNTE 184
LD LH +G +P +R P+F C T ++ LHY S R GL +V+G++ + + T+
Sbjct: 101 LDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLLHGLGKRF-QTK 159
Query: 185 VEVEILKTKEEC-DHVQFLI 203
VEV +E DH F I
Sbjct: 160 VEVTQTAFRETGEDHDIFSI 179
>pdb|3TFG|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66wL67W DOUBLE MUTANT
pdb|3TFG|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66wL67W DOUBLE MUTANT
Length = 189
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 103/200 (51%), Gaps = 22/200 (11%)
Query: 5 VYGFVNYALELLVLKTFGEETWEKINIFSVRICQLRSGAPGPENVWRGDVGENQFLVRQI 64
+YG VN A++ ++ K GE+TWE I G E++ + F+ +
Sbjct: 1 MYGLVNKAIQDMISKHHGEDTWEAIKQ-----------KAGLEDI-------DFFVGMEA 42
Query: 65 YEDEITYNLIGAAVGVLNIPANTILELFGKTFFEFCQDSGYDKILQVLGATPRDFLQVLN 124
Y D++TY+L+GAA VL PA FG+ + + + GY ++L G + +F++ N
Sbjct: 43 YSDDVTYHLVGAASEVLGKPAEEWWIAFGEYWVTYTSEEGYGELLASAGDSLPEFME--N 100
Query: 125 LDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKTVASKLHNTE 184
LD LH +G +P +R P+F C T ++ LHY S R GL +V+G++ + + T+
Sbjct: 101 LDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLLHGLGKRF-QTK 159
Query: 185 VEVEILKTKEEC-DHVQFLI 203
VEV +E DH F I
Sbjct: 160 VEVTQTAFRETGEDHDIFSI 179
>pdb|3HLS|A Chain A, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|B Chain B, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|C Chain C, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|D Chain D, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|E Chain E, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|F Chain F, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|G Chain G, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|H Chain H, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
Length = 66
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 39/51 (76%)
Query: 424 HDATRDLVLMSEQFEADYKLTRNLEFLTDKLQQTYRELEGEKQKTDRLLCS 474
H ATRDLVL+ EQF +YKLT+ LE LTD+LQ T R LE EK+KTD LL S
Sbjct: 3 HXATRDLVLLGEQFREEYKLTQELEXLTDRLQLTLRALEDEKKKTDTLLYS 53
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 539 VPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYK 598
V K+F VT+LFS IVGF+ C+ + ++++TMLN LYT +D +VYK
Sbjct: 7 VQAKKFSNVTMLFSDIVGFTAICSQCS----PLQVITMLNALYTRFDQQCG---ELDVYK 59
Query: 599 VETVGDKYMAVSGLPVSCQDHARCIARLAL 628
VET+GD Y GL HA IA +AL
Sbjct: 60 VETIGDAYCVAGGLHKESDTHAVQIALMAL 89
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 539 VPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYK 598
P + T+LFS IVGF++ + + +++ ++L++LY +D + + P +YK
Sbjct: 2 APAQEHPEATVLFSDIVGFTEIASRSS----PLEVXSLLDELYQRFDAAIE--EYPQLYK 55
Query: 599 VETVGDKYMAVSGLPVSCQDHARCIARLAL--HPKNSR 634
VET+GD YM V + V C DHA + AL H + SR
Sbjct: 56 VETIGDAYMVVCNVTVPCDDHADVLLEFALRMHEEASR 93
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 539 VPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYK 598
P + T+LFS IVGF++ + + +++ ++L++LY +D + + P +YK
Sbjct: 2 APAQEHPEATVLFSDIVGFTEIASRSS----PLEVXSLLDELYQRFDAAIE--EYPQLYK 55
Query: 599 VETVGDKYMAVSGLPVSCQDHARCIARLAL--HPKNSR 634
VET+GD YM V + V C DHA + AL H + SR
Sbjct: 56 VETIGDAYMVVCNVTVPCDDHADVLLEFALRMHEEASR 93
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 537 RPVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNV 596
R + ++D ++LF+ IVGF++ S +V L++LY+ +D+L D +
Sbjct: 1 RNIIADKYDEASVLFADIVGFTE----RASSTAPADLVRFLDRLYSAFDELVDQH---GL 53
Query: 597 YKVETVGDKYMAVSGLPVSCQDHARCIARLALHPKN 632
K+E GD YM VSG+P DH + +A AL N
Sbjct: 54 EKIEVSGDSYMVVSGVPRPRPDHTQALADFALDMTN 89
>pdb|2P08|A Chain A, Structure Of The N-Terminally Truncated Pas Domain Of
Signal Transduction Histidine Kinase From Nostoc
Punctiforme Pcc 73102 With Homology To The H-NoxaH-Noba
Domain Of The Soluble Guanylyl Cyclase
pdb|2P08|B Chain B, Structure Of The N-Terminally Truncated Pas Domain Of
Signal Transduction Histidine Kinase From Nostoc
Punctiforme Pcc 73102 With Homology To The H-NoxaH-Noba
Domain Of The Soluble Guanylyl Cyclase
Length = 115
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 293 ISPATFCRLFPFHIMFDRDLVIEQVGTALSRVI--PCLGEMSNCTLTHILDPVRPHLDLT 350
+SP + FPFH F R+ I Q G L R+ P +G++ + RP + +
Sbjct: 2 LSPELLAKAFPFHFAFSRNREIVQTGEVLERISPEPLVGKL----IEQHFQINRPKILID 57
Query: 351 FDNILAHINTVYVLKTKPGIMQTGAEECYSTLRIKGQMLYVPESDLMIFLCYPSVVNLDD 410
FD I +++L E ++ +++KGQM+Y PE +++ FL P + +
Sbjct: 58 FDAISKQPRALFIL-----------EFLHNGMQLKGQMMYQPEEEVIFFLGSPWITDTTS 106
Query: 411 LTRRGL 416
L G+
Sbjct: 107 LAPLGI 112
>pdb|2P04|A Chain A, 2.1 Ang Structure Of The Dimerized Pas Domain Of Signal
Transduction Histidine Kinase From Nostoc Punctiforme
Pcc 73102 With Homology To The H-NoxaH-Noba Domain Of
The Soluble Guanylyl Cyclase
pdb|2P04|B Chain B, 2.1 Ang Structure Of The Dimerized Pas Domain Of Signal
Transduction Histidine Kinase From Nostoc Punctiforme
Pcc 73102 With Homology To The H-NoxaH-Noba Domain Of
The Soluble Guanylyl Cyclase
Length = 121
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 293 ISPATFCRLFPFHIMFDRDLVIEQVGTALSRVI--PCLGEMSNCTLTHILDPVRPHLDLT 350
+SP + FPFH F R+ I Q G L R+ P +G++ + RP + +
Sbjct: 8 LSPELLAKAFPFHFAFSRNREIVQTGEVLERISPEPLVGKL----IEQHFQINRPKILID 63
Query: 351 FDNILAHINTVYVLKTKPGIMQTGAEECYSTLRIKGQMLYVPESDLMIFLCYPSVVNLDD 410
FD I +++L E ++ +++KGQM+Y PE +++ FL P + +
Sbjct: 64 FDAISKQPRALFIL-----------EFLHNGMQLKGQMMYQPEEEVIFFLGSPWITDTTS 112
Query: 411 LTRRGL 416
L G+
Sbjct: 113 LAPLGI 118
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 542 KRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVET 601
+ +DCV ++F+ I F ++ +K ++ + +LN++ +DDL K V K++T
Sbjct: 7 QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKT 66
Query: 602 VGDKYMAVSGL-PVSCQDHARCIARLALH 629
+G YMA +GL + Q+HA+ R +H
Sbjct: 67 IGSTYMAATGLSAIPSQEHAQEPERQYMH 95
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1TL7|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
pdb|1U0H|B Chain B, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|B Chain B, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|B Chain B, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 212
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 542 KRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVET 601
+ +DCV ++F+ I F ++ +K ++ + +LN++ +DDL K V K++T
Sbjct: 11 QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKT 70
Query: 602 VGDKYMAVSGL-PVSCQDHARCIARLALH 629
+G YMA +GL + Q+HA+ R +H
Sbjct: 71 IGSTYMAATGLSAIPSQEHAQEPERQYMH 99
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 542 KRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVET 601
+ +DCV ++F+ I F ++ +K ++ + +LN++ +DDL K V K++T
Sbjct: 10 QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKT 69
Query: 602 VGDKYMAVSGL-PVSCQDHARCIARLALH 629
+G YMA +GL + Q+HA+ R +H
Sbjct: 70 IGSTYMAATGLSAIPSQEHAQEPERQYMH 98
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 542 KRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVET 601
++ D V++LF+ I GF+ + T A ++V LN+L+ +D L + +++
Sbjct: 30 QKHDNVSILFADIEGFTSLASQCT----AQELVMTLNELFARFDKLAAEN---HCLRIKI 82
Query: 602 VGDKYMAVSGLPVSCQDHARCIARLAL 628
+GD Y VSGLP + DHA C + +
Sbjct: 83 LGDCYYCVSGLPEARADHAHCCVEMGM 109
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 542 KRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVET 601
++ D V++LF+ I GF+ + T A ++V LN+L+ +D L + +++
Sbjct: 22 QKHDNVSILFADIEGFTSLASQCT----AQELVMTLNELFARFDKLAAEN---HCLRIKI 74
Query: 602 VGDKYMAVSGLPVSCQDHARCIARLAL 628
+GD Y VSGLP + DHA C + +
Sbjct: 75 LGDCYYCVSGLPEARADHAHCCVEMGM 101
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 542 KRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVET 601
++ D V++LF+ I GF+ + T A ++V LN+L+ +D L + +++
Sbjct: 30 QKHDNVSILFADIEGFTSLASQCT----AQELVMTLNELFARFDKLAAEN---HCLRIKI 82
Query: 602 VGDKYMAVSGLPVSCQDHARCIARLAL 628
+GD Y VSGLP + DHA C + +
Sbjct: 83 LGDCYYCVSGLPEARADHAHCCVEMGM 109
>pdb|2Z8R|A Chain A, Crystal Structure Of Rhamnogalacturonan Lyase Yesw At 1.40
A Resolution
pdb|2Z8R|B Chain B, Crystal Structure Of Rhamnogalacturonan Lyase Yesw At 1.40
A Resolution
pdb|2Z8S|A Chain A, Crystal Structure Of Rhamnogalacturonan Lyase Yesw
Complexed With Digalacturonic Acid
pdb|2Z8S|B Chain B, Crystal Structure Of Rhamnogalacturonan Lyase Yesw
Complexed With Digalacturonic Acid
pdb|2ZUX|A Chain A, Crystal Structure Of Rhamnogalacturonan Lyase Yesw
Complexed With Rhamnose
pdb|2ZUX|B Chain B, Crystal Structure Of Rhamnogalacturonan Lyase Yesw
Complexed With Rhamnose
Length = 591
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 22 GEETWEKINIFSVRICQLRSGAPGPENV---WRGDVGENQFLVRQI----YEDEITYNLI 74
G+E W +++S + ++ SG P N W GD+ Q +I Y++ ++ N++
Sbjct: 427 GQEVWANGSLYSAKGVKIGSGVPSSTNFGIWWDGDLLREQLDSNRIDKWDYQNGVSKNML 486
Query: 75 GAAVGVLN 82
A+ N
Sbjct: 487 TASGAAAN 494
>pdb|2CN3|A Chain A, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN3|B Chain B, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
Length = 737
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 580 LYTTYDDLTDP---KKNPNVYKVETVGDKYMAVSGLPVSCQDHARCIARLALHPKN 632
LY TY D P V+K T +++ ++ +P S D+ C A LA+ +N
Sbjct: 257 LYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFCFAGLAVDRQN 312
>pdb|2CN2|A Chain A, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|B Chain B, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|C Chain C, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|D Chain D, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
Length = 737
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 573 IVTMLNQLYTTYDDLTDP---KKNPNVYKVETVGDKYMAVSGLPVSCQDHARCIARLALH 629
++ LY TY D P V+K T +++ ++ +P S D+ C A LA+
Sbjct: 250 VLASNGXLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFCFAGLAVD 309
Query: 630 PKN 632
+N
Sbjct: 310 RQN 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,916,106
Number of Sequences: 62578
Number of extensions: 791020
Number of successful extensions: 1728
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1686
Number of HSP's gapped (non-prelim): 30
length of query: 635
length of database: 14,973,337
effective HSP length: 105
effective length of query: 530
effective length of database: 8,402,647
effective search space: 4453402910
effective search space used: 4453402910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)