Query psy7227
Match_columns 635
No_of_seqs 345 out of 1883
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 21:20:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4171|consensus 100.0 8E-105 2E-109 861.5 44.1 515 5-635 1-524 (671)
2 PF07700 HNOB: Heme NO binding 100.0 1.4E-43 3E-48 339.7 15.7 169 5-194 1-170 (171)
3 PF07701 HNOBA: Heme NO bindin 100.0 4.1E-42 8.9E-47 339.1 14.6 180 289-470 3-205 (219)
4 KOG4171|consensus 99.9 6E-28 1.3E-32 263.2 -11.1 275 225-510 233-624 (671)
5 KOG1023|consensus 99.9 1.8E-22 3.9E-27 218.6 6.6 130 498-634 248-378 (484)
6 KOG3618|consensus 99.8 2.9E-19 6.3E-24 193.3 5.4 121 508-635 269-422 (1318)
7 KOG3619|consensus 99.8 6E-19 1.3E-23 200.2 7.5 123 506-635 58-194 (867)
8 smart00044 CYCc Adenylyl- / gu 99.7 8.7E-18 1.9E-22 164.6 13.2 115 513-634 2-118 (194)
9 PF00211 Guanylate_cyc: Adenyl 99.6 6.5E-15 1.4E-19 142.8 7.9 87 541-634 3-89 (184)
10 COG2114 CyaA Adenylate cyclase 99.5 4.1E-14 9E-19 142.1 11.3 110 513-634 17-127 (227)
11 KOG3619|consensus 99.3 2.6E-12 5.6E-17 146.7 8.8 124 512-635 612-749 (867)
12 cd07302 CHD cyclase homology d 99.3 5.5E-12 1.2E-16 120.4 9.2 82 546-634 1-82 (177)
13 KOG3618|consensus 99.3 2.5E-12 5.5E-17 140.2 5.4 124 508-634 1046-1176(1318)
14 PF07701 HNOBA: Heme NO bindin 99.1 5.7E-13 1.2E-17 132.0 -8.4 89 273-363 126-215 (219)
15 KOG1023|consensus 98.0 7.2E-07 1.6E-11 97.8 -2.0 112 389-510 326-479 (484)
16 PF09536 DUF2378: Protein of u 97.1 0.024 5.1E-07 54.6 15.9 164 4-205 8-177 (178)
17 TIGR02019 BchJ bacteriochlorop 97.1 0.0033 7.2E-08 60.6 9.8 158 16-203 13-188 (188)
18 TIGR02265 Mxa_TIGR02265 Myxoco 97.0 0.041 8.8E-07 52.9 16.6 163 4-205 9-178 (179)
19 cd07556 Nucleotidyl_cyc_III Cl 96.7 0.0075 1.6E-07 54.0 8.7 76 546-633 1-76 (133)
20 PF02830 V4R: V4R domain; Int 94.1 0.12 2.7E-06 40.6 5.4 45 159-204 16-61 (62)
21 COG1719 Predicted hydrocarbon 89.8 2.5 5.5E-05 39.9 9.5 122 69-206 31-156 (158)
22 PF05165 GGDN: GGDN family; I 83.6 5.5 0.00012 40.2 8.4 61 544-611 125-186 (246)
23 COG2429 Archaeal GTP cyclohydr 64.1 40 0.00086 33.5 8.4 63 544-613 129-192 (250)
24 PRK02240 GTP cyclohydrolase II 62.9 53 0.0011 33.4 9.4 60 544-610 132-193 (254)
25 PF00990 GGDEF: GGDEF domain; 62.8 55 0.0012 29.4 9.2 80 544-633 30-109 (161)
26 PRK03987 translation initiatio 46.7 3.4E+02 0.0074 27.9 13.4 127 70-207 100-229 (262)
27 PRK10245 adrA diguanylate cycl 45.5 76 0.0016 34.2 8.0 58 545-610 235-292 (366)
28 PRK09966 putative inner membra 44.6 2.4E+02 0.0053 30.3 12.0 58 545-610 277-334 (407)
29 smart00267 GGDEF diguanylate c 42.1 2.4E+02 0.0053 24.8 10.1 58 546-611 34-91 (163)
30 PF00211 Guanylate_cyc: Adenyl 39.2 6.1 0.00013 37.6 -1.5 59 442-503 124-182 (184)
31 PRK09894 diguanylate cyclase; 32.5 2.2E+02 0.0048 28.9 8.9 67 546-622 158-224 (296)
32 PF04051 TRAPP: Transport prot 32.2 3.5E+02 0.0075 25.1 9.2 89 114-206 49-150 (152)
33 cd01949 GGDEF Diguanylate-cycl 31.3 3.5E+02 0.0077 23.5 9.6 58 545-610 30-87 (158)
34 PF01402 RHH_1: Ribbon-helix-h 29.6 1.3E+02 0.0028 20.6 4.5 31 67-97 7-37 (39)
35 TIGR00254 GGDEF diguanylate cy 28.2 4.3E+02 0.0093 23.5 11.1 57 546-610 33-89 (165)
36 PF10264 Stork_head: Winged he 24.7 49 0.0011 27.5 1.7 23 124-146 31-53 (80)
37 PF12668 DUF3791: Protein of u 24.5 1.1E+02 0.0024 23.8 3.7 42 70-112 4-45 (62)
38 cd06395 PB1_Map2k5 PB1 domain 24.3 86 0.0019 25.9 3.0 38 124-163 24-61 (91)
39 KOG1610|consensus 23.9 1.6E+02 0.0035 31.0 5.8 106 15-140 177-282 (322)
40 COG2199 c-di-GMP synthetase (d 23.2 6E+02 0.013 23.5 11.1 71 544-624 49-119 (181)
41 PF12651 RHH_3: Ribbon-helix-h 20.5 3.4E+02 0.0074 19.6 5.6 34 63-96 6-39 (44)
42 PF04468 PSP1: PSP1 C-terminal 20.0 2.1E+02 0.0046 24.0 4.8 36 149-188 51-86 (88)
No 1
>KOG4171|consensus
Probab=100.00 E-value=7.7e-105 Score=861.52 Aligned_cols=515 Identities=46% Similarity=0.767 Sum_probs=458.8
Q ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhccCCCCCCCCccccCc-CCCeeEEeeeeCcHHHHHHHHHHHHhhCC
Q psy7227 5 VYGFVNYALELLVLKTFGEETWEKINIFSVRICQLRSGAPGPENVWRGDV-GENQFLVRQIYEDEITYNLIGAAVGVLNI 83 (635)
Q Consensus 5 M~G~i~~~~~~~v~~~~G~e~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Y~d~~~~~l~~~~~~~~g~ 83 (635)
|||+|+++++.++.+.||+++|+++. . . +++ .++.|.+++.|+|..++++++|++.++|.
T Consensus 1 myg~i~es~~~lv~~~yg~~~w~~v~----~-----~----------~~~~~~~~~~~~~~y~d~~t~~l~~a~~~v~~~ 61 (671)
T KOG4171|consen 1 MYGFIHESLRQLVIRNYGEDIWEKVK----K-----P----------AGLLEGKQFPIHHYYSDTLTPDLVKALSPVLGD 61 (671)
T ss_pred CccHHHHHHHHHHHHHhccchHHhhh----h-----h----------hccccCCcCccccccCcchhHHHHHHHHhhhCC
Confidence 89999999999999999999999999 7 5 777 44559999999999999999999999999
Q ss_pred CHHHHHHHhhHHHHHhhhhcCchHHHHhhCCChHHhhCCCCchhHHHHHhhhcCCCCCCceEEEecCCCeEEEEEEcCCC
Q psy7227 84 PANTILELFGKTFFEFCQDSGYDKILQVLGATPRDFLQVLNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRP 163 (635)
Q Consensus 84 ~~~~ll~~fG~~~~~~~~~~gy~~~l~~~g~~~~~FL~~~~ld~iH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y~S~R~ 163 (635)
|.+++|+.||++|+.++.+.||++++|++|+++.+||+ |||++|++++..|| |++|||+|+..+++++.|||+|.|+
T Consensus 62 ~~d~i~~~~G~~~i~f~~~~g~d~llrsmg~~l~~FL~--~LD~lHd~~~~~y~-mr~PSf~c~~~~d~~l~LhY~S~R~ 138 (671)
T KOG4171|consen 62 SADEIWEMYGRFFITFCSEFGYDKLLRSMGRNLQEFLQ--NLDNLHDHLRFKYP-MRGPSFRCENESDGGLELHYRSGRP 138 (671)
T ss_pred CHHHHHHHHhHHHHHHhhhhCHHHHHHHhhhhHHHHHH--HHHHHHHHHhhccc-cCCCceeeeeCCCCceEEEEecCCc
Confidence 99999999999999999999999999999999999999 99999999999999 9999999999999999999999999
Q ss_pred ChhhhhhHHHHHHHHHhcCceeEEEEecccCC------CceEEEEEeecCCcccccCCchhhhhhhccCCCCCccccccC
Q psy7227 164 GLEHIVIGIVKTVASKLHNTEVEVEILKTKEE------CDHVQFLITETSAPERVELPQIEEIETLSLEPKISPATFCRL 237 (635)
Q Consensus 164 gl~~~~~Gli~~~A~~~f~~~v~i~~~~~~~~------~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 237 (635)
|+.+|+.|+++++|+.||+++|.+.+.+.+++ .+|+.+.++......... ..+.+...
T Consensus 139 Gl~~iv~G~~~evAk~~f~~dv~~~v~~~~~~~~~~~~~ehvi~~~~~~~~~~~~~----------------~~~~~~~~ 202 (671)
T KOG4171|consen 139 GLYHIVIGQVKEVAKELFGLDVKIKVLERNQESRGMRIVEHVIFLIKRKAMAKLRN----------------LSDIVETW 202 (671)
T ss_pred chhhhhhhhHHHHHHHHhcCceEEEEeecccccccceeeEEEEEeecccchhcccc----------------cccccccc
Confidence 99999999999999999999999999998854 257777776544332211 11222233
Q ss_pred CCCceecccchhhhh-hhhccccccchhhhhcccCCCcccccCccchhhcccCCCCCChhhhhhcCCCeeeeCCcceeee
Q psy7227 238 FPFHIMFDRDKVEVE-ILKTKEECDHVQFLITETSAPERVELPQIEEIETLSLEPKISPATFCRLFPFHIMFDRDLVIEQ 316 (635)
Q Consensus 238 Fpf~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~f~~~fPfHi~fdrdl~i~~ 316 (635)
.++...++..+.... ..++ + .-+.|........++..+||++||||++||++|.|+|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~---~-------------------~~~~p~~~~~~l~i~~~~F~~~fPfHf~fd~~~~i~q 260 (671)
T KOG4171|consen 203 DHSQFVFNPKMLIGTSVLKT---F-------------------PENLPSFLDSTLRISTSDFCKAFPFHFMFDKDLEIVQ 260 (671)
T ss_pred Ccccccccccccccchhhhc---c-------------------cccCCCccccccccchHhhHhhCcEEEEEcCCcEehH
Confidence 344444443322110 0000 0 0011112346788999999999999999999999999
Q ss_pred hhhhHHhhcccccccccCchhhhhccccCccccCHHHHHhhcCCeEEEEeCCCCCCCCc-cccccccceeccEEEecCCC
Q psy7227 317 VGTALSRVIPCLGEMSNCTLTHILDPVRPHLDLTFDNILAHINTVYVLKTKPGIMQTGA-EECYSTLRIKGQMLYVPESD 395 (635)
Q Consensus 317 ~G~~l~~~l~~~~~~~g~~l~d~f~~~rP~~~~t~~~ll~~~~~~fvl~~~~~~~~~~~-~~~~~~l~LkGqM~y~~~~~ 395 (635)
+|.++.+.+|......+..+.++|+++||++++||++|+.++|++|++++++..+.... ....+.+.|||||+|+++++
T Consensus 261 ~G~~l~n~~~~~~~~~~~~~~~~fe~~rP~i~~~fe~I~~~~Nt~Fvl~~k~~~~~~~~~~~~~~~l~LKGQM~~i~e~~ 340 (671)
T KOG4171|consen 261 AGNGLLNLMPPNLLQGGTNLEDYFEIVRPKIPFTFENIMSHINTVFVLQLKPEPMSVERDSESLRVLKLKGQMMYIPESD 340 (671)
T ss_pred hhHHHHHhcchhhcccCCcHHHHHhhcCCCccccHHHHHHhhcccEEEEecCCcccccccccccceEEEeeeEEEecCCC
Confidence 99999999976665779999999999999999999999999999999999987666441 23457899999999999999
Q ss_pred eeeeecCCCccchhhhhhcCeeecCCCCCCchhhHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhhhhccCC
Q psy7227 396 LMIFLCYPSVVNLDDLTRRGLFISDIPLHDATRDLVLMSEQFEADYKLTRNLEFLTDKLQQTYRELEGEKQKTDRLLCSP 475 (635)
Q Consensus 396 ~ilfl~sP~v~~le~l~~~gl~lsdlpihd~~rdmill~~~~~~~~~L~~~~~~~~~~Le~~~~~L~~e~~~~~~~l~~~ 475 (635)
+++|+|||.|.++++|...|||+||+|+||++||+|++++|++++++|..++++++++||+++++|+.|++++++
T Consensus 341 sIlflcSP~V~~LdeL~~~GLyLsDiplHDatRDlILl~~Q~~aq~el~~~lE~~~~~Le~~~~~Le~EKkkTd~----- 415 (671)
T KOG4171|consen 341 SILFLCSPVVDNLDELTGRGLYLSDIPLHDATRDLVLLGQQRRAQLELNLELEKLKEKLEKMTRELEEEKKKTDT----- 415 (671)
T ss_pred eEEEEcCcccCchHHHHhCCceeccCCccccchhheecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEeeceeeeccCCchhhHHHHhhcchhhhhhhhHHHHHHhhCcHHHHHHHhcCCCCCCcccceeEEEEeeec
Q psy7227 476 DNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGKEYITSLLSSVRLLYSVLPASVANELRHKRPVPPKRFDCVTLLFSGIV 555 (635)
Q Consensus 476 ~~~~~~~~~~~rg~v~ikg~~~~l~~~l~~r~~~~~~~~~~~~~ll~~~lP~~va~~l~~~~~~~~~~~~~vtvlF~Di~ 555 (635)
||++|+|++||++||+|+.+.+.+|++|||||+||+
T Consensus 416 --------------------------------------------LLy~mlP~~VA~qLr~g~~v~a~~f~~vTilFsdIv 451 (671)
T KOG4171|consen 416 --------------------------------------------LLYSMLPRSVAQQLRQGESVDAKEFDDVTILFSDIV 451 (671)
T ss_pred --------------------------------------------HHHHhCCHHHHHHHHcCCCcCccccCceEEEEeccc
Confidence 999999999999999999999999999999999999
Q ss_pred CcchhcccccCCccHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeCcEEEEEeCCCCCChhHHHHHHHHHHHhhhhhC
Q psy7227 556 GFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVSGLPVSCQDHARCIARLALHPKNSRK 635 (635)
Q Consensus 556 gFt~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~~~~~~~~~~~k~ktiGD~ymav~G~p~~~~~ha~~~~~~Al~m~~~~~ 635 (635)
|||++|++++ |++||++||++|++||++|..|+ |||||||||+||+|+|+|.+++.||+++|++||+|+...+
T Consensus 452 ~Ft~ic~~ct----p~~vV~~LN~lyt~fD~~i~~~~---VYKVETIGDaYm~vsG~P~~~~~HAe~i~~~AL~Mm~~ak 524 (671)
T KOG4171|consen 452 GFTAICSQCT----PMQVVNMLNELYTRFDRIIDTHD---VYKVETIGDAYMVVSGLPDASDYHAEHIADLALGMMEEAK 524 (671)
T ss_pred hHHhHhhccC----cHHHHHHHHHHHHHHHHhhcccC---eEEEeeccchheeecCCCCCChhHHHHHHHHHHHHHHHhh
Confidence 9999999999 99999999999999999999998 9999999999999999999999999999999999998653
No 2
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=100.00 E-value=1.4e-43 Score=339.71 Aligned_cols=169 Identities=40% Similarity=0.758 Sum_probs=158.0
Q ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhccCCCCCCCCccccCcC-CCeeEEeeeeCcHHHHHHHHHHHHhhCC
Q psy7227 5 VYGFVNYALELLVLKTFGEETWEKINIFSVRICQLRSGAPGPENVWRGDVG-ENQFLVRQIYEDEITYNLIGAAVGVLNI 83 (635)
Q Consensus 5 M~G~i~~~~~~~v~~~~G~e~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Y~d~~~~~l~~~~~~~~g~ 83 (635)
|||+|+++|++||+++||+|+|++|+ + + +|++ ++.|++++.|||+++.+|++++|+++|+
T Consensus 1 M~Gii~~~~~~~v~~~~G~~~w~~i~----~-----~----------~~~~~~~~f~~~~~Y~D~~~~~lv~a~a~~~g~ 61 (171)
T PF07700_consen 1 MYGIIFKALQEFVEEKYGEEVWDEIL----E-----R----------AGLDSDGIFTSHGNYDDEETYKLVEAAAEVTGI 61 (171)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHHHH----H-----H----------TTSSTTSS--TTSBTTHHHHHHHHHHHHHHHTS
T ss_pred CeehHHHHHHHHHHHHcCHHHHHHHH----H-----H----------hCCCcCCccccccccCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999 8 6 7785 8899999999999999999999999999
Q ss_pred CHHHHHHHhhHHHHHhhhhcCchHHHHhhCCChHHhhCCCCchhHHHHHhhhcCCCCCCceEEEecCCCeEEEEEEcCCC
Q psy7227 84 PANTILELFGKTFFEFCQDSGYDKILQVLGATPRDFLQVLNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRP 163 (635)
Q Consensus 84 ~~~~ll~~fG~~~~~~~~~~gy~~~l~~~g~~~~~FL~~~~ld~iH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y~S~R~ 163 (635)
|.+++++.||++||+++.+.+|++++++.|+|++|||+ |||+||.+++++||+++||+|+|++.+++++.|||+|+|+
T Consensus 62 ~~~~~l~~fG~~~~~~~~~~~~~~~l~~~g~~~~~FL~--~ld~iH~~v~~~~p~~~~P~f~~~~~~~~~l~l~Y~S~R~ 139 (171)
T PF07700_consen 62 SVEELLEEFGEYFFDFLSESGYERLLRFLGRDLFDFLN--NLDNIHEEVRKLYPDAKPPSFRCEEEDDNELTLHYRSPRP 139 (171)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCCHHHHHCTCSSHHHHHH--HHHHHHHHHHHHSTTSS--EEEEEEEETTEEEEEEEESSS
T ss_pred CHHHHHHHHHHHHHHHHHHhCcHHHHHhcCCCHHHHHH--hHHHHHHHHHHhCCCCcCCeEEEEECCCCEEEEEEECCCc
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ChhhhhhHHHHHHHHHhcCceeEEEEecccC
Q psy7227 164 GLEHIVIGIVKTVASKLHNTEVEVEILKTKE 194 (635)
Q Consensus 164 gl~~~~~Gli~~~A~~~f~~~v~i~~~~~~~ 194 (635)
||++|+.|+|+|+|++||+++|+|++.++++
T Consensus 140 gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~~ 170 (171)
T PF07700_consen 140 GLCPYVIGLIRGAAKHFFELDVEIEHVECMH 170 (171)
T ss_dssp STHHHHHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred CHHHHHHHHHHHHHHHhCCCCeEEEEecccC
Confidence 9999999999999999877799999998764
No 3
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.
Probab=100.00 E-value=4.1e-42 Score=339.10 Aligned_cols=180 Identities=50% Similarity=0.829 Sum_probs=124.0
Q ss_pred CCCCCChhhhhhcCCCeeeeCCcceeeehhhhHHhhcccccccccCchhhhhccccCccccCHHHHHhhcCCeEEEEeCC
Q psy7227 289 LEPKISPATFCRLFPFHIMFDRDLVIEQVGTALSRVIPCLGEMSNCTLTHILDPVRPHLDLTFDNILAHINTVYVLKTKP 368 (635)
Q Consensus 289 ~~~~i~~~~f~~~fPfHi~fdrdl~i~~~G~~l~~~l~~~~~~~g~~l~d~f~~~rP~~~~t~~~ll~~~~~~fvl~~~~ 368 (635)
.+..+++.+||++|||||+||+||+|+|+|.++++.+|... .|..+.|+|+++||.+++||++|+.+.|++|+|++++
T Consensus 3 ~~l~i~~~~F~~lFPFHi~fd~dl~I~~~G~~L~~~~p~~~--~g~~~~d~F~l~rP~i~~tf~~I~~~~n~~F~L~~~~ 80 (219)
T PF07701_consen 3 EDLPISSSTFCKLFPFHIVFDRDLKIVQVGEGLQRLLPDLL--LGKSLTDIFELVRPKIEFTFDNILSHINNVFELESKS 80 (219)
T ss_dssp ------HCCHHHHSTT-EEEETT-BEEEE-HHHHHC-SS----TTSBGGGTEEEEESS--S-HHHHHT-TTS-EEEEE--
T ss_pred cCCcCCHHHHHhhCCeEEEECCCCEEEECchHHHHhCcccc--cCCCcceEEEecCCCCcccHHHHHHhcCCeEEEEECc
Confidence 46689999999999999999999999999999999999874 3777999999999999999999999999999999988
Q ss_pred CCCCCCc----------------------cccccccceeccEEEecCCCeeeeecCCCccchhhhhhcCeeecCCCCCCc
Q psy7227 369 GIMQTGA----------------------EECYSTLRIKGQMLYVPESDLMIFLCYPSVVNLDDLTRRGLFISDIPLHDA 426 (635)
Q Consensus 369 ~~~~~~~----------------------~~~~~~l~LkGqM~y~~~~~~ilfl~sP~v~~le~l~~~gl~lsdlpihd~ 426 (635)
+++.... ....+.++|||||+|+++|++++|+|||+|.++++|.+.|||+||+|+||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~LkGQM~y~~e~~~ilFl~sP~v~~l~el~~~gl~lsD~p~Hd~ 160 (219)
T PF07701_consen 81 PVMSTAKNNIPSNSKSTPRSSDQSSRSTVNDEARSLKLKGQMVYLEEWDSILFLGSPVVSSLEELRERGLYLSDLPLHDA 160 (219)
T ss_dssp ---------------------------------T--EEEEEEEEETTTTEEEEEEEE---TT-----------------E
T ss_pred hhhcccccccccccccccccccccccccccccCCceEEEEEEEEecCCCeEEEEcccccCCHHHHHHcCCCccccCCccc
Confidence 6543210 011235899999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhHHHHHHHHhHH-HHHHHHHHHHHhhhhhhhhhhh
Q psy7227 427 TRDLVLMSEQFEADYKLTRNLE-FLTDKLQQTYRELEGEKQKTDR 470 (635)
Q Consensus 427 ~rdmill~~~~~~~~~L~~~~~-~~~~~Le~~~~~L~~e~~~~~~ 470 (635)
+||++++++|+.+++++..+++ +.+++|++++++++.|++++++
T Consensus 161 ~Rdlvl~~~q~~a~~~l~~~le~~~~~~Le~~~~~l~~ek~ktd~ 205 (219)
T PF07701_consen 161 TRDLVLLGQQQSAELKLAKQLEQEKSAELEESMRELEEEKKKTDE 205 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 8999999999999999999988
No 4
>KOG4171|consensus
Probab=99.92 E-value=6e-28 Score=263.18 Aligned_cols=275 Identities=20% Similarity=0.247 Sum_probs=217.2
Q ss_pred cCCCCCccccccCCCCceecccchhhhhhhhcccccc--------------------ch-------------hhhh----
Q psy7227 225 LEPKISPATFCRLFPFHIMFDRDKVEVEILKTKEECD--------------------HV-------------QFLI---- 267 (635)
Q Consensus 225 ~~~~~~~~~f~~~Fpf~~~~d~~~~~~~~~~~~~~~~--------------------~~-------------~~~~---- 267 (635)
....+++.+||++||||++||+++..+..+...-+.. .+ .|.+
T Consensus 233 ~~l~i~~~~F~~~fPfHf~fd~~~~i~q~G~~l~n~~~~~~~~~~~~~~~~fe~~rP~i~~~fe~I~~~~Nt~Fvl~~k~ 312 (671)
T KOG4171|consen 233 STLRISTSDFCKAFPFHFMFDKDLEIVQAGNGLLNLMPPNLLQGGTNLEDYFEIVRPKIPFTFENIMSHINTVFVLQLKP 312 (671)
T ss_pred cccccchHhhHhhCcEEEEEcCCcEehHhhHHHHHhcchhhcccCCcHHHHHhhcCCCccccHHHHHHhhcccEEEEecC
Confidence 3567899999999999999999998555433221100 00 0100
Q ss_pred ---c-c---cC------------CCcccccCccchhhcccCCCCCChhhhhhcCCCeeeeCCcceeeehhhhHHhhcccc
Q psy7227 268 ---T-E---TS------------APERVELPQIEEIETLSLEPKISPATFCRLFPFHIMFDRDLVIEQVGTALSRVIPCL 328 (635)
Q Consensus 268 ---~-~---~~------------~~~~~~~~~l~~~~~~~~~~~i~~~~f~~~fPfHi~fdrdl~i~~~G~~l~~~l~~~ 328 (635)
. + .. .+++++++|+|||...+.+.+...++|+++||.| +.+||+++++.++..+..+...
T Consensus 313 ~~~~~~~~~~~~~~l~LKGQM~~i~e~~sIlflcSP~V~~LdeL~~~GLyLsDiplH-DatRDlILl~~Q~~aq~el~~~ 391 (671)
T KOG4171|consen 313 EPMSVERDSESLRVLKLKGQMMYIPESDSILFLCSPVVDNLDELTGRGLYLSDIPLH-DATRDLVLLGQQRRAQLELNLE 391 (671)
T ss_pred CcccccccccccceEEEeeeEEEecCCCeEEEEcCcccCchHHHHhCCceeccCCcc-ccchhheecchHHHHHHHHHHH
Confidence 0 0 00 0778899999999999999999999999999999 9999999999999999999877
Q ss_pred cccccCchhhhhccccCccccCHHHHHhhcCCeEE---EEeCCC----------CCCCCccccccccceeccE-------
Q psy7227 329 GEMSNCTLTHILDPVRPHLDLTFDNILAHINTVYV---LKTKPG----------IMQTGAEECYSTLRIKGQM------- 388 (635)
Q Consensus 329 ~~~~g~~l~d~f~~~rP~~~~t~~~ll~~~~~~fv---l~~~~~----------~~~~~~~~~~~~l~LkGqM------- 388 (635)
+|..+.+|+++.+.+.-+++.| |+||+.+-|.-| |+.... ++|++....+.....+-||
T Consensus 392 lE~~~~~Le~~~~~Le~EKkkT-d~LLy~mlP~~VA~qLr~g~~v~a~~f~~vTilFsdIv~Ft~ic~~ctp~~vV~~LN 470 (671)
T KOG4171|consen 392 LEKLKEKLEKMTRELEEEKKKT-DTLLYSMLPRSVAQQLRQGESVDAKEFDDVTILFSDIVGFTAICSQCTPMQVVNMLN 470 (671)
T ss_pred HHHHHHHHHHHHHHHHHHHhhH-HHHHHHhCCHHHHHHHHcCCCcCccccCceEEEEeccchHHhHhhccCcHHHHHHHH
Confidence 7777899999999999999999 999999999887 443332 4455532222223333355
Q ss_pred -EEecCCCeeeeecCCCccchhhhhhcCeeecCCC---------CCCchhhHHHHHHHhHHH------------------
Q psy7227 389 -LYVPESDLMIFLCYPSVVNLDDLTRRGLFISDIP---------LHDATRDLVLMSEQFEAD------------------ 440 (635)
Q Consensus 389 -~y~~~~~~ilfl~sP~v~~le~l~~~gl~lsdlp---------ihd~~rdmill~~~~~~~------------------ 440 (635)
+|..+|..+. .|.||||||+++.||.+|++| +.+++.+|+..+.++..+
T Consensus 471 ~lyt~fD~~i~---~~~VYKVETIGDaYm~vsG~P~~~~~HAe~i~~~AL~Mm~~ak~v~~p~~~~pi~iRiGIHsG~Vv 547 (671)
T KOG4171|consen 471 ELYTRFDRIID---THDVYKVETIGDAYMVVSGLPDASDYHAEHIADLALGMMEEAKEVVSPVTGEPIQIRIGIHSGPVV 547 (671)
T ss_pred HHHHHHHHhhc---ccCeEEEeeccchheeecCCCCCChhHHHHHHHHHHHHHHHhhhhcCcCCCCceEEEEEeccCCee
Confidence 8999998874 677999999999999999999 788888888776655443
Q ss_pred ----------HHHHHhHHHHHHHHHHHHHhhhhhhhh---hhhhccCCCCCCCCceEEeeceeeeccCCchhhHHHHhhc
Q psy7227 441 ----------YKLTRNLEFLTDKLQQTYRELEGEKQK---TDRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRG 507 (635)
Q Consensus 441 ----------~~L~~~~~~~~~~Le~~~~~L~~e~~~---~~~~l~~~~~~~~~~~~~~rg~v~ikg~~~~l~~~l~~r~ 507 (635)
||||||||++++++|+. ..+++|+. ++++|+. .++|.|++||.++|||++.+.+|||.++.
T Consensus 548 AGVVG~kmPRYCLFGdTVn~AsrmES~--s~p~KI~vS~~T~~~l~~----~~~f~f~pRg~v~vk~kg~m~tyFL~~~~ 621 (671)
T KOG4171|consen 548 AGVVGVKMPRYCLFGDTVNLASRMESS--SVPGKINVSPTTYRKLKK----QGSFEFEPRGRVEVKGKGPMETYFLERSL 621 (671)
T ss_pred eeeecccccceeecCCchhhhhhhhcC--CCCceEEeCHHHHHHHHh----CCCceeeecCccccCCCCceEEEEEEecC
Confidence 99999999999999999 68888887 5555553 35599999999999999999999988877
Q ss_pred chh
Q psy7227 508 KEY 510 (635)
Q Consensus 508 ~~~ 510 (635)
...
T Consensus 622 ~~~ 624 (671)
T KOG4171|consen 622 GPS 624 (671)
T ss_pred CCC
Confidence 665
No 5
>KOG1023|consensus
Probab=99.86 E-value=1.8e-22 Score=218.63 Aligned_cols=130 Identities=43% Similarity=0.636 Sum_probs=122.3
Q ss_pred hhhHHHHhhcchhhhhhhhHHHHHHhhCcHHHHHHHhcCCCCCCcccceeEEEEeeecCcchhcccccCCccHHHHHHHH
Q psy7227 498 PMEVWFLSRGKEYITSLLSSVRLLYSVLPASVANELRHKRPVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTML 577 (635)
Q Consensus 498 ~l~~~l~~r~~~~~~~~~~~~~ll~~~lP~~va~~l~~~~~~~~~~~~~vtvlF~Di~gFt~~~~~~~~~~~p~~vv~~L 577 (635)
.++..+.+|+.....++++.+.||+++||+.||++|+.|..+.++.|..|||+|+||+|||.+|++++ |.++|.+|
T Consensus 248 nLe~~v~eRt~~l~~e~~k~d~LL~~mLP~~VA~~lk~G~~v~pe~~~~vti~fsDiv~fT~l~~~~~----P~~vv~~l 323 (484)
T KOG1023|consen 248 NLEKLVDERTAELEEEKKKTDTLLGQMLPKSVAESLKLGKTVDPESFDSVTIYFSDIVGFTVLSSNST----PIQVVTLL 323 (484)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhHhhcCCcCCccccCceeeeeHHHHHHHHHHhcCC----Cceeeeec
Confidence 44455566788889999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEEEeCcEEEEEeCCCCCCh-hHHHHHHHHHHHhhhhh
Q psy7227 578 NQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVSGLPVSCQ-DHARCIARLALHPKNSR 634 (635)
Q Consensus 578 n~~f~~fd~~~~~~~~~~~~k~ktiGD~ymav~G~p~~~~-~ha~~~~~~Al~m~~~~ 634 (635)
|.+|+.||.++++|+ +|||+||||+||+++|+|..+. .|+..++.+|+++++.+
T Consensus 324 Ndlyt~Fd~ii~~~d---~yKVetiGDaYmvvSglp~~n~~~H~~eia~msl~~~~~~ 378 (484)
T KOG1023|consen 324 NDLYTTFDRIIDKHD---VYKVETIGDAYMVVSGLPIRNGYRHAREIASMALGLRSFL 378 (484)
T ss_pred cchHHhhhhcccccC---CeeEeccCcceeecccCceecHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999886 59999999999998765
No 6
>KOG3618|consensus
Probab=99.76 E-value=2.9e-19 Score=193.28 Aligned_cols=121 Identities=30% Similarity=0.521 Sum_probs=105.3
Q ss_pred chhhhhhhhHHHHHHhhCcHHHHHHHhcCCCCC---------------------------------CcccceeEEEEeee
Q psy7227 508 KEYITSLLSSVRLLYSVLPASVANELRHKRPVP---------------------------------PKRFDCVTLLFSGI 554 (635)
Q Consensus 508 ~~~~~~~~~~~~ll~~~lP~~va~~l~~~~~~~---------------------------------~~~~~~vtvlF~Di 554 (635)
++.+-|++--+.+.++.+|+.||+.|.+..... -..-++|+||||||
T Consensus 269 kdLE~EkqlKe~MIhSVMP~kvAD~Llk~g~~pS~nd~~~~~~~s~~~r~~~s~~vk~~~~FRPF~M~~menVSILFADI 348 (1318)
T KOG3618|consen 269 KDLEVEKQLKERMIHSVMPRKVADDLLKQGDEPSENDVKRHATSSPKNRKKKSSIVKAPIAFRPFKMQQMENVSILFADI 348 (1318)
T ss_pred hhhHHHHHHHHHHHHhhcChHHHHHHHhhcCCCCcccccCCCCCCcccccchhhccccccccCchhhhhhhhhhhhhhhh
Confidence 455666666777899999999999996543200 01124999999999
Q ss_pred cCcchhcccccCCccHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeCcEEEEEeCCCCCChhHHHHHHHHHHHhhhhh
Q psy7227 555 VGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVSGLPVSCQDHARCIARLALHPKNSR 634 (635)
Q Consensus 555 ~gFt~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~~~~~~~~~~~k~ktiGD~ymav~G~p~~~~~ha~~~~~~Al~m~~~~ 634 (635)
+|||.+++.-+ +.++|.+||++|.+||++|+..| +.|+.|+||+|.+|+|.|+|+.|||.++++|+|+|++++
T Consensus 349 vGFTkMSsnKs----A~~LV~lLNDLFgRFD~LC~l~g---cEKISTLGDCYYCVaGCPEPraDHA~ccvEMGLgMI~Ai 421 (1318)
T KOG3618|consen 349 VGFTKMSSNKS----AHALVGLLNDLFGRFDRLCELTG---CEKISTLGDCYYCVAGCPEPRADHAYCCVEMGLGMIKAI 421 (1318)
T ss_pred hchhhcccccc----HHHHHHHHHHHHHHHHHHHHhcC---cchhccccceeeeecCCCCCcccceeeehhhcchHHHHH
Confidence 99999998888 99999999999999999999999 999999999999999999999999999999999999987
Q ss_pred C
Q psy7227 635 K 635 (635)
Q Consensus 635 ~ 635 (635)
+
T Consensus 422 r 422 (1318)
T KOG3618|consen 422 R 422 (1318)
T ss_pred H
Confidence 4
No 7
>KOG3619|consensus
Probab=99.76 E-value=6e-19 Score=200.22 Aligned_cols=123 Identities=35% Similarity=0.550 Sum_probs=112.2
Q ss_pred hcchhhhhhhhHHHHHHhhCcHHHHHHHhcCCC--------------CCCcccceeEEEEeeecCcchhcccccCCccHH
Q psy7227 506 RGKEYITSLLSSVRLLYSVLPASVANELRHKRP--------------VPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAM 571 (635)
Q Consensus 506 r~~~~~~~~~~~~~ll~~~lP~~va~~l~~~~~--------------~~~~~~~~vtvlF~Di~gFt~~~~~~~~~~~p~ 571 (635)
..-..+.++++.++||-+.+|++||.++++... ...+.+++|+|+||||+|||.++++++ ++
T Consensus 58 ~r~~l~~~~~~qerlllsvlp~~va~~m~~~i~~~~~~~~~~~~f~~iy~~~h~nVSIl~adivgft~l~s~~s----aq 133 (867)
T KOG3619|consen 58 VRMELETEKQQQERLLLSVLPAHVAMEMKKDIIESSARCKNDNQFHKLYIQRHDNVSILFADIVGFTQLASQCS----AQ 133 (867)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcchhhhccchhheeeccchHhhHHHHhhhhhhhcCCC----HH
Confidence 344567788899999999999999999975421 236778999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeCcEEEEEeCCCCCChhHHHHHHHHHHHhhhhhC
Q psy7227 572 KIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVSGLPVSCQDHARCIARLALHPKNSRK 635 (635)
Q Consensus 572 ~vv~~Ln~~f~~fd~~~~~~~~~~~~k~ktiGD~ymav~G~p~~~~~ha~~~~~~Al~m~~~~~ 635 (635)
++|.+||++|++||+++.+++ +.++|..||+|.+|+|+|++++|||.++++|+++|+++|+
T Consensus 134 elv~~LneLf~rfd~lA~~~~---clRiKiLGdcyyCvsglp~~~~dHA~~~v~mgl~Mi~aI~ 194 (867)
T KOG3619|consen 134 ELVKVLNELFARFDRLAAENH---CLRIKILGDCYYCVSGLPEARPDHAVCCVEMGLDMIKAIK 194 (867)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---eEeeeeecceeEEecCCCCCChhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999874
No 8
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=99.75 E-value=8.7e-18 Score=164.58 Aligned_cols=115 Identities=44% Similarity=0.684 Sum_probs=108.5
Q ss_pred hhhhHHHHHHhhCcHHHHHHHhcCC-CCCCcccceeEEEEeeecCcchhcccccCCccHHHHHHHHHHHHHHHHHhcCCC
Q psy7227 513 SLLSSVRLLYSVLPASVANELRHKR-PVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPK 591 (635)
Q Consensus 513 ~~~~~~~ll~~~lP~~va~~l~~~~-~~~~~~~~~vtvlF~Di~gFt~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~~~~~ 591 (635)
|++++.+||.+++|+.|+++|..|+ .....+++++||||+||+|||.+++.++ |++++.+||.+|..+++++.+|
T Consensus 2 ~~~~~~~ll~~~lP~~v~~~l~~g~~~~~~~~~~~~tvlf~di~g~t~l~~~~~----~~~~~~~l~~~~~~~~~~i~~~ 77 (194)
T smart00044 2 EKRKTDRLLDQLLPASVAESLKRGGSPVPAESYDNVTILFTDIVGFTTLSSEAT----PEQVVTLLNDLYSRFDRIIDRH 77 (194)
T ss_pred hHHHHHHHHHHhCCHHHHHHHHhCCCCccccccCeEEEEEeEhhhhhhhhhhCC----HHHHHHHHHHHHHHHHHHHHhc
Confidence 6788999999999999999999998 5567889999999999999999999999 9999999999999999999999
Q ss_pred CCCCEEEEEEeCcEEEEEeCCCCCC-hhHHHHHHHHHHHhhhhh
Q psy7227 592 KNPNVYKVETVGDKYMAVSGLPVSC-QDHARCIARLALHPKNSR 634 (635)
Q Consensus 592 ~~~~~~k~ktiGD~ymav~G~p~~~-~~ha~~~~~~Al~m~~~~ 634 (635)
| |++++++||++||+||.|... .+||.+++.+|+++++.+
T Consensus 78 g---g~v~~~~Gd~~l~~F~~~~~~~~~~a~~a~~~al~l~~~~ 118 (194)
T smart00044 78 G---GYKVKTIGDAYMVVSGLPTEALVDHAELAADEALDMVESL 118 (194)
T ss_pred C---eEEEEEeCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999988 599999999999998764
No 9
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=99.55 E-value=6.5e-15 Score=142.80 Aligned_cols=87 Identities=29% Similarity=0.468 Sum_probs=83.1
Q ss_pred CcccceeEEEEeeecCcchhcccccCCccHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeCcEEEEEeCCCCCChhHH
Q psy7227 541 PKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVSGLPVSCQDHA 620 (635)
Q Consensus 541 ~~~~~~vtvlF~Di~gFt~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~~~~~~~~~~~k~ktiGD~ymav~G~p~~~~~ha 620 (635)
.+.+++|||||+||+|||++++..+ |++++.+||++|+.+++++.+|+ |++++++||+|||+||.|.+..+|+
T Consensus 3 ~~~~~~vtvlf~di~~ft~l~~~~~----~~~~~~~l~~~~~~~~~~v~~~~---g~~~~~~Gd~~~~~f~~~~~~~~~~ 75 (184)
T PF00211_consen 3 SEQYRNVTVLFADIVGFTDLTEQLD----PEELVRLLNDFFSSLDRIVKQHG---GEIIKFIGDGVMAVFGLPEPDEDAA 75 (184)
T ss_dssp EEEEEEEEEEEEEETTHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHTT---EEEEEEETTEEEEEESSSSCHCHHH
T ss_pred ccccCeEEEEEEEecCcHHHHHhCC----chhHHHHHHHHHHHhhhcccccc---ccccccccceeEEEecccccccccc
Confidence 3568899999999999999999999 99999999999999999999999 9999999999999999998889999
Q ss_pred HHHHHHHHHhhhhh
Q psy7227 621 RCIARLALHPKNSR 634 (635)
Q Consensus 621 ~~~~~~Al~m~~~~ 634 (635)
.+|+++|++|++.+
T Consensus 76 ~~a~~~al~~~~~~ 89 (184)
T PF00211_consen 76 ERAVQFALALLEAL 89 (184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccccccccchhhcc
Confidence 99999999998764
No 10
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=99.53 E-value=4.1e-14 Score=142.11 Aligned_cols=110 Identities=26% Similarity=0.297 Sum_probs=92.6
Q ss_pred hhhhHHHHHHhhCcHHHHHHHhcCCCCCCcccceeEEEEeeecCcchhcccccCCccHHHHHHHHHHHHHHHHHhcCCCC
Q psy7227 513 SLLSSVRLLYSVLPASVANELRHKRPVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKK 592 (635)
Q Consensus 513 ~~~~~~~ll~~~lP~~va~~l~~~~~~~~~~~~~vtvlF~Di~gFt~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~~~~~~ 592 (635)
.......++..+++..+...+..+. . .. +++||||+||+|||.++++.+ |..++++||.||..++.++.+|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~-~~vtilfaDi~g~T~l~~~~~----~~~~~~ll~~~~~~~~~~v~~~g 88 (227)
T COG2114 17 AGLRSDLVLRLYLARVVGRLLARGG--A-GD-RRVTLLFADIVGSTELSESLG----DEALVELLNLYFDAVAEVVARHG 88 (227)
T ss_pred hhhhhhHHHHHHhhhccchhhcccc--c-cC-ceEEEEEEeeccchHHhhhCC----HHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344555777788888888887765 2 12 899999999999999999999 99999999999999999999999
Q ss_pred CCCEEEEEEeCcEEEEEeCCCCCChhHHHHHHH-HHHHhhhhh
Q psy7227 593 NPNVYKVETVGDKYMAVSGLPVSCQDHARCIAR-LALHPKNSR 634 (635)
Q Consensus 593 ~~~~~k~ktiGD~ymav~G~p~~~~~ha~~~~~-~Al~m~~~~ 634 (635)
|.++|+|||++||+||.|.+.+ +|.+++. ++++|++..
T Consensus 89 ---G~v~k~iGD~~la~F~~p~~~~-~A~~~a~~~~~~~~~~~ 127 (227)
T COG2114 89 ---GRVVKFIGDGFLAVFGRPSPLE-DAVACALDLQLALRNPL 127 (227)
T ss_pred ---CEEEEEecceEEEEeCCCCCcH-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887 5655555 567777543
No 11
>KOG3619|consensus
Probab=99.32 E-value=2.6e-12 Score=146.71 Aligned_cols=124 Identities=26% Similarity=0.443 Sum_probs=106.5
Q ss_pred hhhhhHHHHHHhhCcHHHHHHHhcC----CCCCCcccceeEEEEeeecCcchhcccccCCccHHHHHHHHHHHHHHHHHh
Q psy7227 512 TSLLSSVRLLYSVLPASVANELRHK----RPVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDL 587 (635)
Q Consensus 512 ~~~~~~~~ll~~~lP~~va~~l~~~----~~~~~~~~~~vtvlF~Di~gFt~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~ 587 (635)
.....++.||.++||.+||...... ...+.+.+++|.||||.|.||..+...++.+....|+..+||++.+.||++
T Consensus 612 ~m~~~Nr~LLeNiLPaHVA~HFl~~~~r~~eLY~qSy~~VgVMFASipnF~dFYsE~d~NneGlECLRlLNEIIaDFDeL 691 (867)
T KOG3619|consen 612 TMQNLNRLLLENILPSHVAAHFLGSKKRNEELYHQSYDCVGVMFASIPNFKDFYSECDVNNEGLECLRLLNEIIADFDEL 691 (867)
T ss_pred HHHHHHHHHHHhcChHHHHHHHhhcccchHHHHHhhhceEEEEEEecCCcceeeeeecCCcccchHHHHHHHHHhhHHHh
Confidence 3345567899999999999988433 344588999999999999999999888887888999999999999999999
Q ss_pred cCCCCCCCEEEEEEeCcEEEEEeCCCCCC---h-------hHHHHHHHHHHHhhhhhC
Q psy7227 588 TDPKKNPNVYKVETVGDKYMAVSGLPVSC---Q-------DHARCIARLALHPKNSRK 635 (635)
Q Consensus 588 ~~~~~~~~~~k~ktiGD~ymav~G~p~~~---~-------~ha~~~~~~Al~m~~~~~ 635 (635)
+.+-.|..+.|+||||-+|||++|+-... . .|+...+++|++|.+.++
T Consensus 692 L~~pkF~~IEKIKTIGSTYMAAsGL~~~~~~~~~~~~~~~~h~~~l~eFAlal~~~L~ 749 (867)
T KOG3619|consen 692 LSKPKFSGVEKIKTIGSTYMAASGLNPTSAQENDQSLRQWSHLGALVEFALALMHKLD 749 (867)
T ss_pred cCccccccceeEEEecchhhhhhCCChhhhhccCcchhHHhhHHHHHHHHHHHHHHHH
Confidence 99777889999999999999999996532 1 688889999999988763
No 12
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=99.31 E-value=5.5e-12 Score=120.40 Aligned_cols=82 Identities=33% Similarity=0.519 Sum_probs=79.3
Q ss_pred eeEEEEeeecCcchhcccccCCccHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeCcEEEEEeCCCCCChhHHHHHHH
Q psy7227 546 CVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVSGLPVSCQDHARCIAR 625 (635)
Q Consensus 546 ~vtvlF~Di~gFt~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~~~~~~~~~~~k~ktiGD~ymav~G~p~~~~~ha~~~~~ 625 (635)
++||+|+||+|||.+.+..+ |++++.+||.++..+++++.+|+ |+++++.||++|++||.|...++++.+|+.
T Consensus 1 ~~~il~~di~~~t~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~---g~~~~~~gd~~~~~f~~~~~~~~~~~~A~~ 73 (177)
T cd07302 1 EVTVLFADIVGFTALSERLG----PEELVELLNEYFSAFDEIIERHG---GTVDKTIGDAVMAVFGLPGAHEDHAERAVR 73 (177)
T ss_pred CEEEEEEEccChHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHcC---CEEEEEeCceEEEEeCCCCCchhHHHHHHH
Confidence 48999999999999999988 99999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHhhhhh
Q psy7227 626 LALHPKNSR 634 (635)
Q Consensus 626 ~Al~m~~~~ 634 (635)
+|++|++.+
T Consensus 74 ~a~~i~~~~ 82 (177)
T cd07302 74 AALEMQEAL 82 (177)
T ss_pred HHHHHHHHH
Confidence 999999875
No 13
>KOG3618|consensus
Probab=99.28 E-value=2.5e-12 Score=140.19 Aligned_cols=124 Identities=23% Similarity=0.377 Sum_probs=107.2
Q ss_pred chhhhhhhhHHHHHHhhCcHHHHHHHhcCCCCCCcccceeEEEEeeecCcchhcccccCCccHHHHHHHHHHHHHHHHHh
Q psy7227 508 KEYITSLLSSVRLLYSVLPASVANELRHKRPVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDL 587 (635)
Q Consensus 508 ~~~~~~~~~~~~ll~~~lP~~va~~l~~~~~~~~~~~~~vtvlF~Di~gFt~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~ 587 (635)
.+.+..+.+.+-||.+++|.+||++|+.... +.+.++++.|+||.|+||.++.+.. -....|....||++...||++
T Consensus 1046 ~riQ~mrdQADwLL~NiIP~HvaE~LK~~~k-YSeNH~~~gviFASIvNfnemYeEn--yeGGkEflRVLNElIGDFDEL 1122 (1318)
T KOG3618|consen 1046 TRIQSMRDQADWLLRNIIPYHVAEQLKVSQK-YSENHDSGGVIFASIVNFNEMYEEN--YEGGKEFLRVLNELIGDFDEL 1122 (1318)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHhhcccc-ccccCccceEEEEEeccHHHHHHHh--hhchHHHHHHHHHHhccHHHH
Confidence 3445566777889999999999999987664 4577889999999999999998852 234899999999999999999
Q ss_pred cCCCCCCCEEEEEEeCcEEEEEeCCCCCC-------hhHHHHHHHHHHHhhhhh
Q psy7227 588 TDPKKNPNVYKVETVGDKYMAVSGLPVSC-------QDHARCIARLALHPKNSR 634 (635)
Q Consensus 588 ~~~~~~~~~~k~ktiGD~ymav~G~p~~~-------~~ha~~~~~~Al~m~~~~ 634 (635)
..+-++..+.|+||||-+|||++|+...+ .+|.....++|++|++.+
T Consensus 1123 LsrPdf~~iEKIKTIG~tyMAASGLnp~~~~~~~hp~EHl~~l~eFa~amq~Vv 1176 (1318)
T KOG3618|consen 1123 LSRPDFSSIEKIKTIGATYMAASGLNPAQAQDGSHPQEHLQILFEFAKAMQRVV 1176 (1318)
T ss_pred hccccchhhHHHhhhhHHHHHhcCCChHHccCCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999996543 368899999999999865
No 14
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.
Probab=99.12 E-value=5.7e-13 Score=132.02 Aligned_cols=89 Identities=18% Similarity=0.110 Sum_probs=60.7
Q ss_pred CcccccCccchhhcccCCCCCChhhhhhcCCCeeeeCCcceeeehhhhHHhhcccccc-cccCchhhhhccccCccccCH
Q psy7227 273 PERVELPQIEEIETLSLEPKISPATFCRLFPFHIMFDRDLVIEQVGTALSRVIPCLGE-MSNCTLTHILDPVRPHLDLTF 351 (635)
Q Consensus 273 ~~~~~~~~l~~~~~~~~~~~i~~~~f~~~fPfHi~fdrdl~i~~~G~~l~~~l~~~~~-~~g~~l~d~f~~~rP~~~~t~ 351 (635)
++|+.++|+|+|...+.+.+...|+|+++||.| +.+||+++.+.++..+..+....+ ....+|++..+.++-+++.|
T Consensus 126 ~e~~~ilFl~sP~v~~l~el~~~gl~lsD~p~H-d~~Rdlvl~~~q~~a~~~l~~~le~~~~~~Le~~~~~l~~ek~kt- 203 (219)
T PF07701_consen 126 EEWDSILFLGSPVVSSLEELRERGLYLSDLPLH-DATRDLVLLGQQQSAELKLAKQLEQEKSAELEESMRELEEEKKKT- 203 (219)
T ss_dssp TTTTEEEEEEEE---TT------------------EHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-
T ss_pred cCCCeEEEEcccccCCHHHHHHcCCCccccCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 788899999999999999999999999999999 999999999999999988877766 66888999999999999998
Q ss_pred HHHHhhcCCeEE
Q psy7227 352 DNILAHINTVYV 363 (635)
Q Consensus 352 ~~ll~~~~~~fv 363 (635)
|+||+++.|+.|
T Consensus 204 d~LL~~mlP~~V 215 (219)
T PF07701_consen 204 DELLYSMLPPSV 215 (219)
T ss_dssp HHHHHHTS-HHH
T ss_pred HHHHHHhCCHHH
Confidence 999999988643
No 15
>KOG1023|consensus
Probab=98.00 E-value=7.2e-07 Score=97.77 Aligned_cols=112 Identities=21% Similarity=0.361 Sum_probs=84.3
Q ss_pred EEecCCCeeeeecCCCccchhhhhhcCeeecCCCCCC---chhhHHHHHHHhH---------------------------
Q psy7227 389 LYVPESDLMIFLCYPSVVNLDDLTRRGLFISDIPLHD---ATRDLVLMSEQFE--------------------------- 438 (635)
Q Consensus 389 ~y~~~~~~ilfl~sP~v~~le~l~~~gl~lsdlpihd---~~rdmill~~~~~--------------------------- 438 (635)
+|..||..+ ....+||+|+.+|.||.+|++|.-. .++++...+-...
T Consensus 326 lyt~Fd~ii---~~~d~yKVetiGDaYmvvSglp~~n~~~H~~eia~msl~~~~~~~~f~i~H~P~~~l~iRig~~sg~~ 402 (484)
T KOG1023|consen 326 LYTTFDRII---DKHDVYKVETIGDAYMVVSGLPIRNGYRHAREIASMALGLRSFLESFSLPHRPWEKLRLRIGFHSGPV 402 (484)
T ss_pred hHHhhhhcc---cccCCeeEeccCcceeecccCceecHhHHHHHHHHHHHHHHHHHhccCCCCCCchhhheeeccccCCc
Confidence 788888765 6778999999999999999999433 2334332221111
Q ss_pred ---------HHHHHHHhHHHHHHHHHHHHHhhhhhhhhhh---hhccCCCCCCCCceEEeeceeeeccCCchhhHHHHhh
Q psy7227 439 ---------ADYKLTRNLEFLTDKLQQTYRELEGEKQKTD---RLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSR 506 (635)
Q Consensus 439 ---------~~~~L~~~~~~~~~~Le~~~~~L~~e~~~~~---~~l~~~~~~~~~~~~~~rg~v~ikg~~~~l~~~l~~r 506 (635)
..|||++||++++++||.+ .. ..|+.+. .+|. ..++|..+.||-+.+||++...++|+.++
T Consensus 403 ~agVvgl~mPRYclFgDtvn~AsrMes~--G~-~~i~~s~~~~~~l~----~~~~~~~e~rG~v~~kgkg~~~t~wl~g~ 475 (484)
T KOG1023|consen 403 VAGVVGLKMPRYCLFGDTVNTASRMESN--GK-LMIHLSEEAKNLLT----ERPQFETEERGLVELKGKGVMSTYWLLGE 475 (484)
T ss_pred eecccccCCCcccchhhHHHHHhhhhhc--CC-eEEEecHHHHHHHH----hcCceeeeccCcEEeecCceeeeEEeccC
Confidence 1199999999999999999 54 6666633 3333 23499999999999999999999999887
Q ss_pred cchh
Q psy7227 507 GKEY 510 (635)
Q Consensus 507 ~~~~ 510 (635)
....
T Consensus 476 ~~~~ 479 (484)
T KOG1023|consen 476 SSKS 479 (484)
T ss_pred cccc
Confidence 7654
No 16
>PF09536 DUF2378: Protein of unknown function (DUF2378); InterPro: IPR011751 This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus (strain DK 1622). Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=97.12 E-value=0.024 Score=54.59 Aligned_cols=164 Identities=18% Similarity=0.169 Sum_probs=121.0
Q ss_pred cchhHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhccCCCCCCCCccccCcCCCeeEEeeeeCcHHHHHHHHHHHHhh--
Q psy7227 4 NVYGFVNYALELLVLKTFGEETWEKINIFSVRICQLRSGAPGPENVWRGDVGENQFLVRQIYEDEITYNLIGAAVGVL-- 81 (635)
Q Consensus 4 ~M~G~i~~~~~~~v~~~~G~e~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~d~~~~~l~~~~~~~~-- 81 (635)
++.|++++++...|. ++.-++++ + ++. +..+..--.||=+...+++.++++.+
T Consensus 8 tveGLf~~~l~~~v~----~~~~~rlr----~----------------~g~-d~~~~~~~~YP~~~flr~l~~aa~~l~p 62 (178)
T PF09536_consen 8 TVEGLFFRALLGRVR----PELAERLR----A----------------AGL-DLDRPLFPAYPLEVFLRLLAAAARELYP 62 (178)
T ss_pred hhHHHHHHHHHHhcc----HHHHHHHH----H----------------hcc-CccccccccCCHHHHHHHHHHHHHHHcC
Confidence 678999999998888 55665565 3 343 23455567899999999999999998
Q ss_pred CCCHHHHHHHhhHHHHHhhhhcCchHHHHh-hC-CChHHhhCCCCchhHHHHHhhhcC-CCCCCceEEEecCCCeEEEEE
Q psy7227 82 NIPANTILELFGKTFFEFCQDSGYDKILQV-LG-ATPRDFLQVLNLDALHDHLGTLYP-GMRAPSFRCTETDDGALVLHY 158 (635)
Q Consensus 82 g~~~~~ll~~fG~~~~~~~~~~gy~~~l~~-~g-~~~~~FL~~~~ld~iH~~v~~~yp-~~~~Psf~~~~~~~~~l~l~Y 158 (635)
+.+.++-++..|+.++.-+.++-..+.+-. .+ .+..-.|. ++...|- ..+..+-+.++.++....|+.
T Consensus 63 ~~~~e~a~r~lG~~~v~gf~~T~~Gr~~~~l~~~~gP~R~L~---------r~p~~~ra~~ny~e~~~~~~G~~~~rl~~ 133 (178)
T PF09536_consen 63 GLPREEAYRRLGRRFVEGFFETLVGRALLGLARLGGPRRLLE---------RAPRSYRAGVNYGERRVEWLGPRSARLRM 133 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCHHHHHH---------HhhHHhhhccCcceeEEEEeCCceEEEEE
Confidence 679999999999999998877744444432 22 23333444 4443333 345567888999999999999
Q ss_pred EcCCCChhhhhhHHHHHHHHHhcCce-eEEEEecccCCCceEEEEEee
Q psy7227 159 YSDRPGLEHIVIGIVKTVASKLHNTE-VEVEILKTKEECDHVQFLITE 205 (635)
Q Consensus 159 ~S~R~gl~~~~~Gli~~~A~~~f~~~-v~i~~~~~~~~~~~~~f~i~~ 205 (635)
...-. ...|..|+|+++-+. -+-. +.|+..... .+.+.+.|++
T Consensus 134 ~~~~~-~p~f~~G~l~~~L~~-~Ga~~~~V~~~~~~--~~~~~y~i~W 177 (178)
T PF09536_consen 134 NRDFM-PPAFHEGVLEAALEA-AGARGPRVRVRERG--GDDAEYRIRW 177 (178)
T ss_pred ecCCC-ChHHHHHHHHHHHHH-cCCCCCEEEEEecC--CCceEEEEEe
Confidence 98887 899999999999999 5665 778766654 3456777765
No 17
>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase. This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.
Probab=97.09 E-value=0.0033 Score=60.64 Aligned_cols=158 Identities=13% Similarity=0.084 Sum_probs=111.8
Q ss_pred HHHHhhHHHHHHHHHHhhhhhhhccCCCCCCCCccccCcCC-CeeEEeeeeCcHHHHHHHHHHHHhhCC-CHHHHHHHhh
Q psy7227 16 LVLKTFGEETWEKINIFSVRICQLRSGAPGPENVWRGDVGE-NQFLVRQIYEDEITYNLIGAAVGVLNI-PANTILELFG 93 (635)
Q Consensus 16 ~v~~~~G~e~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~d~~~~~l~~~~~~~~g~-~~~~ll~~fG 93 (635)
-+++.||++.-+.|+ . + +|..+ -.=.+....|++.+..|.+++-+.+|. ....+++..|
T Consensus 13 al~~~~g~~~~~~~~----~-----~----------~g~~~~~~~~p~~mv~E~~~~aL~~aL~~elG~~aa~~vl~~~G 73 (188)
T TIGR02019 13 ALEAAYGPGAADRAL----A-----A----------AGQGVLRPGPPSGMLPESQFSTLHRWLRDTLGETAAARLLRESG 73 (188)
T ss_pred HHHHhcCHHHHHHHH----H-----H----------cCcccccCCCchhcCCHHHHHHHHHHHHHHhCHHHHHHHHHHHh
Confidence 356889999999999 7 5 55522 122456889999999999999999996 8889999999
Q ss_pred HHHHHhhhhcCchH----HHHhhCCChHHhhCCCCchhHHHHHhh-----------hcCCCCCCceEEEecCCCeEEEEE
Q psy7227 94 KTFFEFCQDSGYDK----ILQVLGATPRDFLQVLNLDALHDHLGT-----------LYPGMRAPSFRCTETDDGALVLHY 158 (635)
Q Consensus 94 ~~~~~~~~~~gy~~----~l~~~g~~~~~FL~~~~ld~iH~~v~~-----------~yp~~~~Psf~~~~~~~~~l~l~Y 158 (635)
+..-.++...-.+. ++|.+ ...-++. -+-.-+.+ +|-.-.+|.+++...-. ...+
T Consensus 74 ~~ta~y~l~~rIp~~~q~~Lr~l--p~~~~~r-----~l~~aI~k~aWtf~G~G~fs~~~~~~l~i~I~ds~~-a~~~-- 143 (188)
T TIGR02019 74 LATADYILANRIPPPAQRLIRAL--PAGLAAR-----VLLTAIAKHAWTFAGSGKFRYVSGPPLSFEIARNPV-VAGE-- 143 (188)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHC--ChHHHHH-----HHHHHHHHHHHhhcccceEEEeeCCCeEEEEecChh-hhcC--
Confidence 98877773333444 44432 1112221 11112233 56666788887765432 2223
Q ss_pred EcCCCChhhhhhHHHHHHHHHhcCceeEEEEeccc-CCCceEEEEE
Q psy7227 159 YSDRPGLEHIVIGIVKTVASKLHNTEVEVEILKTK-EECDHVQFLI 203 (635)
Q Consensus 159 ~S~R~gl~~~~~Gli~~~A~~~f~~~v~i~~~~~~-~~~~~~~f~i 203 (635)
.+++| .|++-.|+++++-+.+++.++.|....|. .+.++|+|.+
T Consensus 144 ~~~~P-~C~~~aGife~lFs~lv~~~~~v~Et~C~a~G~~~C~F~~ 188 (188)
T TIGR02019 144 SSDTP-VCHWYAAVFERLLRRLVWPHVAVRETACCAKGAPRCRFEL 188 (188)
T ss_pred CCCCc-eeeeeHHHHHHHHHHHhCCCceEEeehHhhcCCCcceeeC
Confidence 44888 79999999999999999999999999988 4456888864
No 18
>TIGR02265 Mxa_TIGR02265 Myxococcus xanthus paralogous family TIGR02265. This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus DK 1622. Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=97.04 E-value=0.041 Score=52.89 Aligned_cols=163 Identities=15% Similarity=0.086 Sum_probs=117.7
Q ss_pred cchhHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhccCCCCCCCCccccCcCCCeeEEeee-eCcHHHHHHHHHHHHhh-
Q psy7227 4 NVYGFVNYALELLVLKTFGEETWEKINIFSVRICQLRSGAPGPENVWRGDVGENQFLVRQI-YEDEITYNLIGAAVGVL- 81 (635)
Q Consensus 4 ~M~G~i~~~~~~~v~~~~G~e~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Y~d~~~~~l~~~~~~~~- 81 (635)
++.|++++++...|... .-+.+. . ++. ..+.+-.. ||=+...++..++++.+
T Consensus 9 tv~Glff~~l~~~v~~~----~~~rlr----~----------------~g~--~~~~~~~~~YP~~~~lr~~~~AA~~l~ 62 (179)
T TIGR02265 9 TVRGLFFRGLLDRVTPE----AVERLR----Q----------------AGL--DLDRDLLPAYPLEQWLRLLRVAAELLA 62 (179)
T ss_pred HHHHHHHHHHHHHHhHH----HHHHHH----H----------------hCc--ccCCCcccCCCHHHHHHHHHHHHHHHc
Confidence 57899999999988664 333333 2 332 24555566 99999999999999998
Q ss_pred -CCCHHHHHHHhhHHHHHhhhhcCchHHHHh-hC-CChHHhhCCCCchhHHHHHhhhcC-CCCCCceEEEecCCCeEEEE
Q psy7227 82 -NIPANTILELFGKTFFEFCQDSGYDKILQV-LG-ATPRDFLQVLNLDALHDHLGTLYP-GMRAPSFRCTETDDGALVLH 157 (635)
Q Consensus 82 -g~~~~~ll~~fG~~~~~~~~~~gy~~~l~~-~g-~~~~~FL~~~~ld~iH~~v~~~yp-~~~~Psf~~~~~~~~~l~l~ 157 (635)
+.+.++-++..|+..+.-+.++...+.+-. .+ .+.+-.|. ++...|- .-+-.+-++++.++.+..|+
T Consensus 63 p~~~~e~A~r~lG~~~v~~f~~T~vGr~~~~l~~~~gPrrlL~---------r~p~~yra~~~yge~~~~~~Gp~~~~l~ 133 (179)
T TIGR02265 63 PQLPLEEAFRALGERAVTGFRSTVVGRALLGLVRLLGPRRLLS---------RAPQGYRAAVNYGERRVVETGPTSGRLW 133 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCHHHHHH---------HHhHHHHhhcccceeEEEEeCCcEEEEE
Confidence 567899999999999998887755542221 11 23444444 4443333 23456778899999999999
Q ss_pred EEcCCCChhhhhhHHHHHHHHHhcC-ceeEEEEecccCCCceEEEEEee
Q psy7227 158 YYSDRPGLEHIVIGIVKTVASKLHN-TEVEVEILKTKEECDHVQFLITE 205 (635)
Q Consensus 158 Y~S~R~gl~~~~~Gli~~~A~~~f~-~~v~i~~~~~~~~~~~~~f~i~~ 205 (635)
....-. -+.|..|+|+++-+. .| .++.|.....+ .+++.|.|++
T Consensus 134 ~~~~~~-~~~f~~G~l~~aLe~-~Ga~~~~V~~~~~g--~~~~~y~i~W 178 (179)
T TIGR02265 134 MNRDFM-PPAYHEGVLHAALRA-VGARDVRVRGRAFG--GLDATYRLSW 178 (179)
T ss_pred ecCCCC-chHHHHHHHHHHHHH-cCCCCCEEEEEecC--CCCceEEEEe
Confidence 998766 699999999999999 56 67888765554 4567777765
No 19
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=96.74 E-value=0.0075 Score=54.04 Aligned_cols=76 Identities=33% Similarity=0.510 Sum_probs=64.3
Q ss_pred eeEEEEeeecCcchhcccccCCccHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeCcEEEEEeCCCCCChhHHHHHHH
Q psy7227 546 CVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVSGLPVSCQDHARCIAR 625 (635)
Q Consensus 546 ~vtvlF~Di~gFt~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~~~~~~~~~~~k~ktiGD~ymav~G~p~~~~~ha~~~~~ 625 (635)
.+++++.||.+|+.+.+... ....-++|.++...+.+++..++ +....+-||.+++++.. +...++..
T Consensus 1 ~~~ll~i~i~~~~~i~~~~g----~~~~~~~l~~~~~~l~~~~~~~~---~~~~r~~~d~f~~l~~~-----~~~~~~~~ 68 (133)
T cd07556 1 PVTILFADIVGFTSLADALG----PDEGDELLNELAGRFDSLIRRSG---DLKIKTIGDEFMVVSGL-----DHPAAAVA 68 (133)
T ss_pred CEEEEEEEchhhHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHcC---cEEEEeecceEEEEECc-----hHHHHHHH
Confidence 37899999999999999999 99999999999999999999877 78999999999999853 33456666
Q ss_pred HHHHhhhh
Q psy7227 626 LALHPKNS 633 (635)
Q Consensus 626 ~Al~m~~~ 633 (635)
+|..+.+.
T Consensus 69 ~~~~i~~~ 76 (133)
T cd07556 69 FAEDMREA 76 (133)
T ss_pred HHHHHHHH
Confidence 66666654
No 20
>PF02830 V4R: V4R domain; InterPro: IPR004096 Central cellular functions such as metabolism, solute transport and signal transduction are regulated, in part, via binding of small molecules by specialised domains. The 4-vinyl reductase (4VR) domain is a predicted small molecular binding domain, that may bind to hydrocarbons []. Proteins that contain this domain include a regulator of the phenol catabolic pathway and a protein involved in chlorophyll biosynthesis.; PDB: 2OSD_A 2OSO_A.
Probab=94.11 E-value=0.12 Score=40.57 Aligned_cols=45 Identities=36% Similarity=0.436 Sum_probs=34.5
Q ss_pred EcCCCChhhhhhHHHHHHHHHhcCceeEEEEeccc-CCCceEEEEEe
Q psy7227 159 YSDRPGLEHIVIGIVKTVASKLHNTEVEVEILKTK-EECDHVQFLIT 204 (635)
Q Consensus 159 ~S~R~gl~~~~~Gli~~~A~~~f~~~v~i~~~~~~-~~~~~~~f~i~ 204 (635)
.+.+| .+++..|++.|+.+.+++.+++++..++. .+.++++|.|+
T Consensus 16 ~~~~p-~C~~~~G~~~G~~~~~~~~~~~v~E~~C~a~G~~~C~F~i~ 61 (62)
T PF02830_consen 16 NSDEP-VCWFTAGYLAGFFSALFGKEVEVEETKCQAMGDDHCEFVIR 61 (62)
T ss_dssp --SS----HHHHHHHHHHHHHHHSSEEEEEEEE-GGGT-SSEEEEEE
T ss_pred CCCCc-eEHHHHHHHHHHHHHHhCCceEEEEeEEEcCCCCeeEEEEE
Confidence 45666 99999999999999999999999999988 45579999985
No 21
>COG1719 Predicted hydrocarbon binding protein (contains V4R domain) [General function prediction only]
Probab=89.75 E-value=2.5 Score=39.91 Aligned_cols=122 Identities=19% Similarity=0.134 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhhCCCHHHHHHHhhHHHHHhhhhcCchHHHHhhCCChHHhhCCCCchhHHHHHhhh-cC-CCC-CCceE
Q psy7227 69 ITYNLIGAAVGVLNIPANTILELFGKTFFEFCQDSGYDKILQVLGATPRDFLQVLNLDALHDHLGTL-YP-GMR-APSFR 145 (635)
Q Consensus 69 ~~~~l~~~~~~~~g~~~~~ll~~fG~~~~~~~~~~gy~~~l~~~g~~~~~FL~~~~ld~iH~~v~~~-yp-~~~-~Psf~ 145 (635)
-......+.-..+|...+.++...|+.+-..+... ....++.+|+. - +...... +- +.. ++.+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~y~~G~~~G~~l~~~-------~~~~~~~~f~~--~----~~~~~~~v~~~~~~~~~~v~ 97 (158)
T COG1719 31 FLIAALRALKKYLGIGAEPVLYEAGKEIGKALIKE-------KLIEELENFLE--F----WEEVGGGVLEVEEEEPLVVE 97 (158)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhcch-------hchHHHHHHHH--H----HHhhcceEEEcccCCCceEE
Confidence 34444567888899999999999999998877751 11222333332 1 1111111 00 011 34555
Q ss_pred EEecCCCeEEEEEEcCCCChhhhhhHHHHHHHHHhcCceeEEEEeccc-CCCceEEEEEeec
Q psy7227 146 CTETDDGALVLHYYSDRPGLEHIVIGIVKTVASKLHNTEVEVEILKTK-EECDHVQFLITET 206 (635)
Q Consensus 146 ~~~~~~~~l~l~Y~S~R~gl~~~~~Gli~~~A~~~f~~~v~i~~~~~~-~~~~~~~f~i~~~ 206 (635)
+.... ....+.. ..-| +|++..|+|.|+.+.+++.++.|+..++. .+.++|.|.|...
T Consensus 98 v~~c~-~c~~~p~-~~eP-vC~~~aG~iag~l~~~~~k~~~v~Et~C~~~G~~~C~F~i~~~ 156 (158)
T COG1719 98 VYDCI-ECAGLPG-IGEP-VCHLEAGFIAGFLEEILGKKVEVEETECAAEGDDRCVFEIRLK 156 (158)
T ss_pred EEcCc-hhhcCCC-CCCc-chhHHhhHHHHHHHHHhCCCeEEEEEEEeecCCCceEEEEEec
Confidence 44332 1112333 5666 99999999999999999999999999988 4457999999764
No 22
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=83.64 E-value=5.5 Score=40.16 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=49.3
Q ss_pred cceeEEEEeeecCcc-hhcccccCCccHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeCcEEEEEeC
Q psy7227 544 FDCVTLLFSGIVGFS-DYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVSG 611 (635)
Q Consensus 544 ~~~vtvlF~Di~gFt-~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~~~~~~~~~~~k~ktiGD~ymav~G 611 (635)
-..|+|.--||.++| +++...+ |-+..-..++++..+.+.+.+|| +.---.=||-+|+++.
T Consensus 125 d~~v~iAH~DI~d~T~~~Td~~~----~ydt~~~I~~l~~~l~~~~~~~G---~L~fylGGDNi~~v~p 186 (246)
T PF05165_consen 125 DGYVQIAHFDINDSTGTYTDEES----PYDTYLEIEDLYAKLMKYLEKYG---SLAFYLGGDNIMAVCP 186 (246)
T ss_dssp S--EEEEEEEETTHHHHTTTTS-----HHHHHHHHHHHHHHHHHHHHTTT------EEEETTEEEEE-T
T ss_pred CCceEEEEEeeeccchhhhcccC----hHHHHHHHHHHHHHHHHHHHhcC---CEEEEecCceEEEECC
Confidence 457999999999999 8888888 99999999999999999999999 7777667799999983
No 23
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=64.10 E-value=40 Score=33.53 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=53.2
Q ss_pred cceeEEEEeeecCcc-hhcccccCCccHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeCcEEEEEeCCC
Q psy7227 544 FDCVTLLFSGIVGFS-DYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVSGLP 613 (635)
Q Consensus 544 ~~~vtvlF~Di~gFt-~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~~~~~~~~~~~k~ktiGD~ymav~G~p 613 (635)
-..|+|.--||.+-| ++....+ |-.....+|..+..+++-+.++| +.---.=||-||+++..-
T Consensus 129 dg~v~IAH~Dvn~~Tgt~Td~~~----~~~t~~~I~~~~~~L~~~l~k~g---al~fflGGDN~ma~~p~~ 192 (250)
T COG2429 129 DGYVQIAHFDVNDATGTYTDIVS----PYDTYTEIQRVYATLMRFLEKIG---ALLFFLGGDNIMAVCPGL 192 (250)
T ss_pred CCceEEEEEeeecchhhhhcccc----hhHHHHHHHHHHHHHHHHHHhcC---cEEEEecCcceEEECCCC
Confidence 456999999999999 7777777 99999999999999999999998 555444569999998443
No 24
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=62.94 E-value=53 Score=33.40 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=49.2
Q ss_pred cceeEEEEeeecCcchhcc-cccCCccHHHHHHHHHHHHHHHHHhcCC-CCCCCEEEEEEeCcEEEEEe
Q psy7227 544 FDCVTLLFSGIVGFSDYCA-THTDSKGAMKIVTMLNQLYTTYDDLTDP-KKNPNVYKVETVGDKYMAVS 610 (635)
Q Consensus 544 ~~~vtvlF~Di~gFt~~~~-~~~~~~~p~~vv~~Ln~~f~~fd~~~~~-~~~~~~~k~ktiGD~ymav~ 610 (635)
-..|+|.--||.++|.... ..+ |-+..-..+++|..+-+.+.+ || +.--=.=||-+|+++
T Consensus 132 ~~~v~iaH~Di~~~T~~~td~~~----~~dt~~~i~~~~~~l~~~~~~~~g---~l~ff~GGDN~~~~~ 193 (254)
T PRK02240 132 DGYVQIAHFDINDITGTYTDIEN----AFDTFLEIEQAYLALMRELRKAHD---ALSFFVGGDNFMAPC 193 (254)
T ss_pred CCceEEEEEeeecccceeeccCc----hhHHHHHHHHHHHHHHHHHHHhcC---cEEEEecCceEEEEC
Confidence 5689999999999998755 336 999999999999988888888 88 655545569999997
No 25
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=62.80 E-value=55 Score=29.36 Aligned_cols=80 Identities=10% Similarity=0.019 Sum_probs=61.8
Q ss_pred cceeEEEEeeecCcchhcccccCCccHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeCcEEEEEeCCCCCChhHHHHH
Q psy7227 544 FDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVSGLPVSCQDHARCI 623 (635)
Q Consensus 544 ~~~vtvlF~Di~gFt~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~~~~~~~~~~~k~ktiGD~ymav~G~p~~~~~ha~~~ 623 (635)
....+++..+|.+|..+.+... ....-++|.++-..+...+...+ ....+-+|.++++. |....+.+..+
T Consensus 30 ~~~~~l~~i~i~~~~~l~~~~G----~~~~~~~l~~i~~~L~~~~~~~~----~~~r~~~~~f~il~--~~~~~~~~~~~ 99 (161)
T PF00990_consen 30 GEPFALVLIDIDNLDELNEKYG----YEVGDEILRQIAKRLKKQLRESD----ILARLGDDEFAILL--PDTDSEEAEEL 99 (161)
T ss_dssp TSEEEEEEEEETTHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCTTS----EEEEEETTEEEEEE--ETCTHHHHHHH
T ss_pred CCCceEEEEecccccccccccc----ccccccccccccccccccccccc----ccccccchheeecc--cccccccchhh
Confidence 3579999999999999999888 88888888888888888888744 77778889988875 45555556666
Q ss_pred HHHHHHhhhh
Q psy7227 624 ARLALHPKNS 633 (635)
Q Consensus 624 ~~~Al~m~~~ 633 (635)
.+.+.++.+.
T Consensus 100 ~~~~~~~~~~ 109 (161)
T PF00990_consen 100 AERLERLIDE 109 (161)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhhhhhhh
Confidence 6666655543
No 26
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=46.71 E-value=3.4e+02 Score=27.85 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhhCCCHHHHHHHhhHHHHHhhhhcCchHHHHhhCCChHHhhCCCCchh-HHHHHhh-hcCCCCCCceEEE
Q psy7227 70 TYNLIGAAVGVLNIPANTILELFGKTFFEFCQDSGYDKILQVLGATPRDFLQVLNLDA-LHDHLGT-LYPGMRAPSFRCT 147 (635)
Q Consensus 70 ~~~l~~~~~~~~g~~~~~ll~~fG~~~~~~~~~~gy~~~l~~~g~~~~~FL~~~~ld~-iH~~v~~-~yp~~~~Psf~~~ 147 (635)
..+++.-+|+.+|.+.+++++.+|-.+...+... |+.|-.+.-.+- +-|.-++++. +-+.+.. .-.+++||...+.
T Consensus 100 ~~~il~~~a~~~~~~~e~~~~~~~~~l~~~yg~~-y~af~~~~~~~~-~~l~~~~~~~~~~~~l~~~~~~~~~~~~vki~ 177 (262)
T PRK03987 100 ADKWLELAAEKLGKSLEEAWEEVGYKLEDEFGDL-YDAFEEAAIEGE-EALDDLGVPEEWADALVEIARENIEVPKVKIS 177 (262)
T ss_pred HhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcH-HHHHHHHHhcCh-hhhccCCCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 5667888999999999999999999998888765 886655442232 5666222332 3333322 2346889988875
Q ss_pred ecCCCeEEEEEEcCCCChhhhhhHHHHHHH-HHhcCceeEEEEecccCCCceEEEEEeecC
Q psy7227 148 ETDDGALVLHYYSDRPGLEHIVIGIVKTVA-SKLHNTEVEVEILKTKEECDHVQFLITETS 207 (635)
Q Consensus 148 ~~~~~~l~l~Y~S~R~gl~~~~~Gli~~~A-~~~f~~~v~i~~~~~~~~~~~~~f~i~~~~ 207 (635)
+-+.|.++.+- |.-.+=..|..|.+ ...=+.+++|..+. +..+++.++..+
T Consensus 178 ----~~ie~~~~~~d-Gi~~Ik~aL~~~~~~~~~~~~~v~i~~ig----~P~Y~i~~~~~d 229 (262)
T PRK03987 178 ----GYVDLTSPEPD-GVEIIKKALKAAEKANKYEDVEVEIYYVG----APRYRIDVTAPD 229 (262)
T ss_pred ----EEEEEEeCCCC-hHHHHHHHHHHHHhhcCCCCCcEEEEEEC----CCeEEEEEEeCC
Confidence 34677776644 57777666666655 22112344444443 345666665543
No 27
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=45.48 E-value=76 Score=34.20 Aligned_cols=58 Identities=16% Similarity=0.005 Sum_probs=44.7
Q ss_pred ceeEEEEeeecCcchhcccccCCccHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeCcEEEEEe
Q psy7227 545 DCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVS 610 (635)
Q Consensus 545 ~~vtvlF~Di~gFt~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~~~~~~~~~~~k~ktiGD~ymav~ 610 (635)
++.++++.||.+|..+.+... -..-=++|.++-..+...+...+ ..-.+-||.++++.
T Consensus 235 ~~~~ll~idId~Fk~INd~~G----h~~GD~lL~~vA~~L~~~l~~~d----~laRlggdeFavll 292 (366)
T PRK10245 235 RDATLLIIDIDHFKSINDTWG----HDVGDEAIVALTRQLQITLRGSD----VIGRFGGDEFAVIM 292 (366)
T ss_pred CCEEEEEEECCcchHHHHhhC----chHHHHHHHHHHHHHHHhCCCCC----EEEEEcCcEEEEEe
Confidence 468999999999999998876 55555667777777777776544 55678899998886
No 28
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=44.63 E-value=2.4e+02 Score=30.33 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=44.2
Q ss_pred ceeEEEEeeecCcchhcccccCCccHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeCcEEEEEe
Q psy7227 545 DCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVS 610 (635)
Q Consensus 545 ~~vtvlF~Di~gFt~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~~~~~~~~~~~k~ktiGD~ymav~ 610 (635)
...++++.||-+|..+.+... ....=++|.++-..+.+.+..++ ..-.+=||.++++.
T Consensus 277 ~~~~l~~i~id~f~~in~~~G----~~~gd~~l~~~a~~L~~~~~~~~----~~~R~~~deF~ill 334 (407)
T PRK09966 277 KTSALLFLDGDNFKYINDTWG----HATGDRVLIEIAKRLAEFGGLRH----KAYRLGGDEFAMVL 334 (407)
T ss_pred CceEEEEEECccchHHHhhhc----hHHHHHHHHHHHHHHHHhCCCCC----EEEEEccceEEEEE
Confidence 347899999999999988887 66666677777777777776644 44567789888776
No 29
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=42.07 E-value=2.4e+02 Score=24.80 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=47.4
Q ss_pred eeEEEEeeecCcchhcccccCCccHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeCcEEEEEeC
Q psy7227 546 CVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVSG 611 (635)
Q Consensus 546 ~vtvlF~Di~gFt~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~~~~~~~~~~~k~ktiGD~ymav~G 611 (635)
.++++..+|.+|..+.+... .+..-++|..+...+.+.+..++ ..-..-||.++++..
T Consensus 34 ~~~l~~i~i~~~~~~~~~~g----~~~~~~~l~~i~~~l~~~~~~~~----~~~r~~~~~f~ii~~ 91 (163)
T smart00267 34 PFALLLIDLDNFKDINDTYG----HAVGDELLQEVAQRLSSCLRPGD----LLARLGGDEFALLLP 91 (163)
T ss_pred eEEEEEEEccccchhhhccC----chhHHHHHHHHHHHHHHhcCCCC----EEEEecCceEEEEec
Confidence 48999999999999999988 88888889999999988887744 444456777877764
No 30
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=39.22 E-value=6.1 Score=37.65 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=40.5
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCCCCCceEEeeceeeeccCCchhhHHH
Q psy7227 442 KLTRNLEFLTDKLQQTYRELEGEKQKTDRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWF 503 (635)
Q Consensus 442 ~L~~~~~~~~~~Le~~~~~L~~e~~~~~~~l~~~~~~~~~~~~~~rg~v~ikg~~~~l~~~l 503 (635)
.+.|+.++.+++|++.. ...++..++..... ......|.++.+|.+.+||+....+|++
T Consensus 124 ~v~G~~vn~Aarl~~~a--~~~~i~vs~~v~~~-l~~~~~~~~~~~g~~~lkG~~~~~~y~~ 182 (184)
T PF00211_consen 124 DVFGDAVNIAARLESLA--PPGQILVSEEVYDA-LNESDQFRFEELGRVELKGKGPVQTYQL 182 (184)
T ss_dssp EEESHHHHHHHHHHHTS--STTSEEEEHHHHHH-HTTHTTEEEEEEEEEEETTSSEEEEEEE
T ss_pred eeeehhhhhhHHHHHhh--cccccccCHHHHHH-hcccCceEEEEeeeEEEecCCCcEEEEE
Confidence 45678889999998883 44555553321111 1135899999999999999877666653
No 31
>PRK09894 diguanylate cyclase; Provisional
Probab=32.49 E-value=2.2e+02 Score=28.95 Aligned_cols=67 Identities=15% Similarity=0.046 Sum_probs=49.2
Q ss_pred eeEEEEeeecCcchhcccccCCccHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeCcEEEEEeCCCCCChhHHHH
Q psy7227 546 CVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVSGLPVSCQDHARC 622 (635)
Q Consensus 546 ~vtvlF~Di~gFt~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~~~~~~~~~~~k~ktiGD~ymav~G~p~~~~~ha~~ 622 (635)
.+++++.||-+|..+..... ....=.+|.++-..+-+.+...+ ..-.+=||.++++. |......+..
T Consensus 158 ~~~l~~i~id~f~~in~~~G----~~~gd~~L~~ia~~l~~~~~~~~----~~~R~~g~~F~ill--~~~~~~~~~~ 224 (296)
T PRK09894 158 NLYLALLDIDRFKLVNDTYG----HLIGDVVLRTLATYLASWTRDYE----TVYRYGGEEFIICL--KAATDEEACR 224 (296)
T ss_pred cEEEEEEECccccHHHHccC----cHHHHHHHHHHHHHHHHhCCCCC----EEEEEcCCeEEEEe--CCCCHHHHHH
Confidence 58999999999999998887 66666778888888888777654 44556678888774 4444444443
No 32
>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....
Probab=32.19 E-value=3.5e+02 Score=25.10 Aligned_cols=89 Identities=15% Similarity=0.118 Sum_probs=53.8
Q ss_pred CChHHhhCCCCchhHHHHHhhhcCCCCCCceEEEecCCCeEEEEEEcCCC-------------ChhhhhhHHHHHHHHHh
Q psy7227 114 ATPRDFLQVLNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRP-------------GLEHIVIGIVKTVASKL 180 (635)
Q Consensus 114 ~~~~~FL~~~~ld~iH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y~S~R~-------------gl~~~~~Gli~~~A~~~ 180 (635)
..+.+++. -+.-|+..+=+.+=+-.+=..+-... ++...|+-.+.+. -+..|+.|+|+|+-..
T Consensus 49 ~r~~~~~~--~~~fI~k~~W~~~fgk~~d~l~~n~~-~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~- 124 (152)
T PF04051_consen 49 PRFTDILD--ILKFICKDFWKMLFGKQADNLKTNHD-RGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALES- 124 (152)
T ss_dssp CSTSSHHH--HHHHHHHHHHHHHHSS--SEEEEETT-STEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHH-
T ss_pred cccCCHHH--HHHHHHHHHHHHHhCCCCccccccCC-CCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHH-
Confidence 44455555 55566665544443433333332221 5666665554322 2678999999999999
Q ss_pred cCceeEEEEecccCCCceEEEEEeec
Q psy7227 181 HNTEVEVEILKTKEECDHVQFLITET 206 (635)
Q Consensus 181 f~~~v~i~~~~~~~~~~~~~f~i~~~ 206 (635)
.+-+.+|.........+.+.|.|...
T Consensus 125 lg~~~~Vta~~~~~~~~~~~f~Ik~~ 150 (152)
T PF04051_consen 125 LGFPAEVTAESDPLNGPQTTFQIKFE 150 (152)
T ss_dssp TTEEEEEEEEECCCGTTEEEEEEEEE
T ss_pred CCCceEEEEEEeccCCCCeEEEEEEe
Confidence 58888888776665456678888653
No 33
>cd01949 GGDEF Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.
Probab=31.32 E-value=3.5e+02 Score=23.52 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=45.8
Q ss_pred ceeEEEEeeecCcchhcccccCCccHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeCcEEEEEe
Q psy7227 545 DCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVS 610 (635)
Q Consensus 545 ~~vtvlF~Di~gFt~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~~~~~~~~~~~k~ktiGD~ymav~ 610 (635)
...+++..+|.+|..+....+ ....-++|..+...+.+.+...+ ..-..=++.++++.
T Consensus 30 ~~~~l~~i~i~~~~~i~~~~g----~~~~~~~l~~~~~~l~~~~~~~~----~~~~~~~~~f~~l~ 87 (158)
T cd01949 30 RPLALLLIDIDHFKQINDTYG----HAAGDEVLKEVAERLRSSLRESD----LVARLGGDEFAILL 87 (158)
T ss_pred CeEEEEEEEchhhhHHHHhhC----hHhHHHHHHHHHHHHHHhCCCCC----EEEEecCCeEEEEe
Confidence 358899999999999999988 88888888889999988887643 34444456677665
No 34
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=29.61 E-value=1.3e+02 Score=20.60 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHhhCCCHHHHHHHhhHHHH
Q psy7227 67 DEITYNLIGAAVGVLNIPANTILELFGKTFF 97 (635)
Q Consensus 67 d~~~~~l~~~~~~~~g~~~~~ll~~fG~~~~ 97 (635)
+.++.+.+..+|+..|+|..++++..=+.++
T Consensus 7 ~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l 37 (39)
T PF01402_consen 7 PDELYERLDELAKELGRSRSELIREAIREYL 37 (39)
T ss_dssp EHHHHHHHHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5788889999999999999999887554443
No 35
>TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain. The GGDEF domain is named for the motif GG[DE]EF shared by many proteins carrying the domain. There is evidence that the domain has diguanylate cyclase activity. Several proteins carrying this domain also carry domains with functions relating to environmental sensing. These include PleD, a response regulator protein involved in the swarmer-to-stalked cell transition in Caulobacter crescentus, and FixL, a heme-containing oxygen sensor protein.
Probab=28.17 E-value=4.3e+02 Score=23.46 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=44.8
Q ss_pred eeEEEEeeecCcchhcccccCCccHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeCcEEEEEe
Q psy7227 546 CVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVS 610 (635)
Q Consensus 546 ~vtvlF~Di~gFt~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~~~~~~~~~~~k~ktiGD~ymav~ 610 (635)
..+++..+|.+|..+..... ....-++|-.+...+.+.+... ...-..=+|.++++.
T Consensus 33 ~~~l~~i~i~~~~~i~~~~G----~~~~~~ll~~~a~~l~~~~~~~----~~i~r~~~~~f~il~ 89 (165)
T TIGR00254 33 SFSVLMIDIDNFKKINDTLG----HDVGDEVLREVARILQSSVRGS----DVVGRYGGEEFVVIL 89 (165)
T ss_pred ceEEEEEeccchhHHHHhhC----hhhHHHHHHHHHHHHHHhcCcC----CEEEEecCCeEEEEe
Confidence 47899999999999999888 7777778888888888887654 355556667777775
No 36
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=24.68 E-value=49 Score=27.46 Aligned_cols=23 Identities=35% Similarity=0.687 Sum_probs=20.0
Q ss_pred CchhHHHHHhhhcCCCCCCceEE
Q psy7227 124 NLDALHDHLGTLYPGMRAPSFRC 146 (635)
Q Consensus 124 ~ld~iH~~v~~~yp~~~~Psf~~ 146 (635)
+++.|-+++++.||++..||-..
T Consensus 31 t~E~l~~~L~~~yp~i~~Ps~e~ 53 (80)
T PF10264_consen 31 TQETLREHLRKHYPGIAIPSQEV 53 (80)
T ss_pred hHHHHHHHHHHhCCCCCCCCHHH
Confidence 77788899999999999998654
No 37
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=24.54 E-value=1.1e+02 Score=23.75 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhCCCHHHHHHHhhHHHHHhhhhcCchHHHHhh
Q psy7227 70 TYNLIGAAVGVLNIPANTILELFGKTFFEFCQDSGYDKILQVL 112 (635)
Q Consensus 70 ~~~l~~~~~~~~g~~~~~ll~~fG~~~~~~~~~~gy~~~l~~~ 112 (635)
+..++...|+.+|+|.++++..|-++-+-.+....|+ .+++.
T Consensus 4 ~v~~Ie~~A~~~~~s~~ea~~~~~~~~~~~~i~~~Yd-~lHt~ 45 (62)
T PF12668_consen 4 VVFCIEEFAKKLNISGEEAYNYFKRSGVIDYIIDCYD-VLHTQ 45 (62)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHcCcHHHHHHcch-HHHHC
Confidence 3558899999999999999998888765544444466 44444
No 38
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=24.30 E-value=86 Score=25.91 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=29.9
Q ss_pred CchhHHHHHhhhcCCCCCCceEEEecCCCeEEEEEEcCCC
Q psy7227 124 NLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRP 163 (635)
Q Consensus 124 ~ld~iH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y~S~R~ 163 (635)
+..++.+.++...|++.+-.|..++++.+.+ +-+|.-.
T Consensus 24 ~F~DvL~~I~~vlp~aT~tAFeYEDE~gDRI--TVRSDeE 61 (91)
T cd06395 24 LFRDVLDVIGQVLPEATTTAFEYEDEDGDRI--TVRSDEE 61 (91)
T ss_pred cHHHHHHHHHHhcccccccceeeccccCCee--EecchHH
Confidence 4556667889999999999999998887755 4566665
No 39
>KOG1610|consensus
Probab=23.88 E-value=1.6e+02 Score=30.95 Aligned_cols=106 Identities=18% Similarity=0.205 Sum_probs=64.2
Q ss_pred HHHHHhhHHHHHHHHHHhhhhhhhccCCCCCCCCccccCcCCCeeEEeeeeCcHHHHHHHHHHHHhhCCCHHHHHHHhhH
Q psy7227 15 LLVLKTFGEETWEKINIFSVRICQLRSGAPGPENVWRGDVGENQFLVRQIYEDEITYNLIGAAVGVLNIPANTILELFGK 94 (635)
Q Consensus 15 ~~v~~~~G~e~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~d~~~~~l~~~~~~~~g~~~~~ll~~fG~ 94 (635)
-|...+||-|.|.+.+ + +.++ .++=.++. ++.|.|. ...|. -.++.+.+-++++...+++.+.+|+
T Consensus 177 ~Y~~SK~aVeaf~D~l----R-~EL~-~fGV~Vsi----iePG~f~-T~l~~---~~~~~~~~~~~w~~l~~e~k~~YGe 242 (322)
T KOG1610|consen 177 PYCVSKFAVEAFSDSL----R-RELR-PFGVKVSI----IEPGFFK-TNLAN---PEKLEKRMKEIWERLPQETKDEYGE 242 (322)
T ss_pred cchhhHHHHHHHHHHH----H-HHHH-hcCcEEEE----eccCccc-cccCC---hHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4667899999999888 4 3333 22211111 1344333 23444 2455667888899999999999999
Q ss_pred HHHHhhhhcCchHHHHhhCCChHHhhCCCCchhHHHHHhhhcCCCC
Q psy7227 95 TFFEFCQDSGYDKILQVLGATPRDFLQVLNLDALHDHLGTLYPGMR 140 (635)
Q Consensus 95 ~~~~~~~~~gy~~~l~~~g~~~~~FL~~~~ld~iH~~v~~~yp~~~ 140 (635)
.++....+. ........-.++ ++.+|.+-+-++..+|..+
T Consensus 243 dy~~~~~~~-~~~~~~~~~~dl-----s~v~~~~~hAlts~~Pr~R 282 (322)
T KOG1610|consen 243 DYFEDYKKS-LEKYLSVASADL-----SPVVDCYEHALTSKHPRTR 282 (322)
T ss_pred HHHHHHHHH-HHhhhhhhcccc-----chHHHHHHHHHHhcCcchh
Confidence 999988776 344442221222 2366676556776666543
No 40
>COG2199 c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms]
Probab=23.24 E-value=6e+02 Score=23.52 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=50.9
Q ss_pred cceeEEEEeeecCcchhcccccCCccHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeCcEEEEEeCCCCCChhHHHHH
Q psy7227 544 FDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVSGLPVSCQDHARCI 623 (635)
Q Consensus 544 ~~~vtvlF~Di~gFt~~~~~~~~~~~p~~vv~~Ln~~f~~fd~~~~~~~~~~~~k~ktiGD~ymav~G~p~~~~~ha~~~ 623 (635)
....++++.||-+|..+-.... -..-=.+|-.+-..+-..+...+ ..-..-||-..++.- .....++..+
T Consensus 49 ~~~~~l~~iDiD~Fk~iND~~G----h~~GD~vL~~va~~L~~~~~~~~----~~~R~gGdEF~i~l~--~~~~~~~~~~ 118 (181)
T COG2199 49 GEPLALLLLDLDHFKQINDTYG----HAAGDEVLREVARRLRSNLREGD----LVARLGGDEFAVLLP--GTSLEEAARL 118 (181)
T ss_pred CCCeEEEEEeCcCCcccccccc----chHHHHHHHHHHHHHHHhcCCCC----EEEEeccceeEEEeC--CCCHHHHHHH
Confidence 4569999999999999876666 55556677777788888887654 667788899888874 3223444444
Q ss_pred H
Q psy7227 624 A 624 (635)
Q Consensus 624 ~ 624 (635)
+
T Consensus 119 ~ 119 (181)
T COG2199 119 A 119 (181)
T ss_pred H
Confidence 3
No 41
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=20.45 E-value=3.4e+02 Score=19.58 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=26.7
Q ss_pred eeeCcHHHHHHHHHHHHhhCCCHHHHHHHhhHHH
Q psy7227 63 QIYEDEITYNLIGAAVGVLNIPANTILELFGKTF 96 (635)
Q Consensus 63 ~~Y~d~~~~~l~~~~~~~~g~~~~~ll~~fG~~~ 96 (635)
..+=+.+++.-+..+|+.+|+|...+++.-=+.+
T Consensus 6 t~~l~~el~~~L~~ls~~t~i~~S~Ll~eAle~~ 39 (44)
T PF12651_consen 6 TFSLDKELYEKLKELSEETGIPKSKLLREALEDY 39 (44)
T ss_pred EEecCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445778888899999999999999988744433
No 42
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=20.02 E-value=2.1e+02 Score=23.98 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=28.4
Q ss_pred cCCCeEEEEEEcCCCChhhhhhHHHHHHHHHhcCceeEEE
Q psy7227 149 TDDGALVLHYYSDRPGLEHIVIGIVKTVASKLHNTEVEVE 188 (635)
Q Consensus 149 ~~~~~l~l~Y~S~R~gl~~~~~Gli~~~A~~~f~~~v~i~ 188 (635)
-|.+.++++|.++.. .=+..|++.+++. |+..|++.
T Consensus 51 ~D~~k~~fyy~a~~r---vDFR~Lvr~L~~~-f~~RIem~ 86 (88)
T PF04468_consen 51 FDGSKLTFYYTAESR---VDFRELVRDLARE-FKTRIEMR 86 (88)
T ss_pred cCCCEEEEEEEeCCc---CcHHHHHHHHHHH-hCceEEEE
Confidence 467888999998876 2357889999999 78888764
Done!