RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7227
(635 letters)
>gnl|CDD|219526 pfam07701, HNOBA, Heme NO binding associated. The HNOBA domain is
found associated with the HNOB domain and pfam00211 in
soluble cyclases and signalling proteins. The HNOB
domain is predicted to function as a heme-dependent
sensor for gaseous ligands, and transduce diverse
downstream signals, in both bacteria and animals.
Length = 209
Score = 271 bits (695), Expect = 1e-87
Identities = 107/200 (53%), Positives = 139/200 (69%), Gaps = 12/200 (6%)
Query: 286 TLSLEPKISPATFCRLFPFHIMFDRDLVIEQVGTALSRVIPCLGEMSNCTLTHILDPVRP 345
+L + KIS ATFC+ FPFH++FDRD+ I Q G L RV+P L + LT + + VRP
Sbjct: 1 SLLTKLKISTATFCKAFPFHLVFDRDMEIVQAGEGLLRVLPKL-LLGKKKLTDVFELVRP 59
Query: 346 HLDLTFDNILAHINTVYVLKTKPGIM-----------QTGAEECYSTLRIKGQMLYVPES 394
+ TF+NIL+HINTV+VL+TK G+M E +LR+KGQM+Y+PES
Sbjct: 60 KITFTFENILSHINTVFVLRTKSGVMSVTDNNNVEDAADIDESPLKSLRLKGQMIYIPES 119
Query: 395 DLMIFLCYPSVVNLDDLTRRGLFISDIPLHDATRDLVLMSEQFEADYKLTRNLEFLTDKL 454
D ++FLC PSV NLD+LT RGL++SDIPLHDATRDL+L+ EQ A KL + LE L DKL
Sbjct: 120 DSILFLCSPSVDNLDELTGRGLYLSDIPLHDATRDLILLGEQARAQLKLKKRLEKLKDKL 179
Query: 455 QQTYRELEGEKQKTDRLLCS 474
++ +RELE EK+KTD LL S
Sbjct: 180 EEAHRELEEEKKKTDDLLYS 199
Score = 49.9 bits (120), Expect = 9e-07
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 222 TLSLEPKISPATFCRLFPFHIMFDRD 247
+L + KIS ATFC+ FPFH++FDRD
Sbjct: 1 SLLTKLKISTATFCKAFPFHLVFDRD 26
>gnl|CDD|203730 pfam07700, HNOB, Heme NO binding. The HNOB (Heme NO Binding)
domain, is a predominantly alpha-helical domain and
binds heme via a covalent linkage to histidine. The HNOB
domain is predicted to function as a heme-dependent
sensor for gaseous ligands, and transduce diverse
downstream signals, in both bacteria and animals.
Length = 171
Score = 211 bits (540), Expect = 2e-65
Identities = 85/190 (44%), Positives = 111/190 (58%), Gaps = 20/190 (10%)
Query: 6 YGFVNYALELLVLKTFGEETWEKINIFSVRICQLRSGAPGPENVWRGDVGENQFLVRQIY 65
YG + +LE LV + +GE+ WE+I L PE V F V + Y
Sbjct: 2 YGIIFESLEELVQRKYGEDVWEQI---------LEKAGFEPEGV---------FTVHESY 43
Query: 66 EDEITYNLIGAAVGVLNIPANTILELFGKTFFEFCQDSGYDKILQVLGATPRDFLQVLNL 125
+D Y+L+ AA VL IPA I E FG+ FF F +SGYD++L+VLG RDFLQ +L
Sbjct: 44 DDSELYDLVAAASKVLGIPAEEIWEAFGRFFFTFFSESGYDELLRVLGRNLRDFLQ--SL 101
Query: 126 DALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKTVASKLHNTEV 185
D +H + LYPG R PSFRCTE DG LVLHY S R GL H V+G++K VA + E+
Sbjct: 102 DNIHVEVTKLYPGARPPSFRCTEESDGGLVLHYRSKRTGLYHYVLGLLKGVAKHFYELEI 161
Query: 186 EVEILKTKEE 195
+E+L+ EE
Sbjct: 162 SIEVLERTEE 171
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 121 bits (306), Expect = 1e-31
Identities = 52/112 (46%), Positives = 68/112 (60%), Gaps = 9/112 (8%)
Query: 519 RLLYSVLPASVANELRHKR-PVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTML 577
RLL +LPASVA +L+ PVP + +D VT+LFS IVGF+ C+T T ++V +L
Sbjct: 8 RLLDQLLPASVAEQLKRGGSPVPAESYDNVTILFSDIVGFTSLCSTST----PEQVVNLL 63
Query: 578 NQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVSGLPVSC-QDHARCIARLAL 628
N LY+ +D + D YKV+T+GD YM SGLP DHA IA AL
Sbjct: 64 NDLYSRFDQIID---RHGGYKVKTIGDAYMVASGLPEEALVDHAELIADEAL 112
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
domain.
Length = 184
Score = 106 bits (266), Expect = 2e-26
Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 7/90 (7%)
Query: 539 VPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYK 598
V + +D VT+LF+ IVGF+ + H+ ++V +LN LYT +D+L D VYK
Sbjct: 1 VYAQSYDNVTILFADIVGFTALSSRHS----PEELVRLLNDLYTRFDELLD---KHGVYK 53
Query: 599 VETVGDKYMAVSGLPVSCQDHARCIARLAL 628
V+T+GD YMA SGLP HA+ +A +AL
Sbjct: 54 VKTIGDAYMAASGLPEPSPAHAQTLAEMAL 83
Score = 33.0 bits (76), Expect = 0.29
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 477 NEDPQFQFEYRGPVTMKGKSEPMEVWFLSR 506
QF+F RG V +KGK + ME +FL+
Sbjct: 156 KTREQFEFTERGEVEVKGKGK-METYFLNG 184
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic and
prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions to
bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 79.2 bits (196), Expect = 4e-17
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 547 VTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKY 606
VT+LF+ IVGF+ G ++V +LN+ ++ +D++ + +T+GD
Sbjct: 2 VTVLFADIVGFTALSERL----GPEELVELLNEYFSAFDEIIE---RHGGTVDKTIGDAV 54
Query: 607 MAVSGLPVSCQDHARCIARLAL 628
MAV GLP + +DHA R AL
Sbjct: 55 MAVFGLPGAHEDHAERAVRAAL 76
Score = 39.9 bits (94), Expect = 0.001
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 478 EDPQFQFEYRGPVTMKGKSEPMEVWFL 504
D F+FE G V +KGKS P+ V+ L
Sbjct: 151 GDAGFEFEELGEVELKGKSGPVRVYRL 177
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be divided
into two major groups; the mononucleotidyl cyclases
(MNC's) and the diguanylate cyclases (DGC's). The
MNC's, which include the adenylate cyclases (AC's) and
the guanylate cyclases (GC's), have a conserved cyclase
homology domain (CHD), while the DGC's have a conserved
GGDEF domain, named after a conserved motif within this
subgroup. Their products, cyclic guanylyl and adenylyl
nucleotides, are second messengers that play important
roles in eukaryotic signal transduction and prokaryotic
sensory pathways.
Length = 133
Score = 55.1 bits (133), Expect = 4e-09
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 546 CVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDK 605
VT+LF+ IVGF+ +G +LN+L +D L K++T+GD+
Sbjct: 1 PVTILFADIVGFTSLADALGPDEGDE----LLNELAGRFDSLIRR---SGDLKIKTIGDE 53
Query: 606 YMAVSGLPVSCQDHARCIARLAL 628
+M VSGL DH A
Sbjct: 54 FMVVSGL-----DHPAAAVAFAE 71
>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms].
Length = 227
Score = 39.8 bits (93), Expect = 0.002
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 547 VTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPN-VYKVETVGDK 605
VTLLF+ IVG ++ + D L +L Y D + V+ +GD
Sbjct: 47 VTLLFADIVGSTELSESLGD--------EALVELLNLYFDAVAEVVARHGGRVVKFIGDG 98
Query: 606 YMAVSGLPVSCQDHARCIARLAL 628
++AV G P +D C L L
Sbjct: 99 FLAVFGRPSPLEDAVACALDLQL 121
Score = 29.0 bits (65), Expect = 6.1
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 478 EDPQFQFEYRGPVTMKGKSEPMEVWFLSRGK 508
D F G +KG + P+ V+ L
Sbjct: 187 RDLVDLFSGLGSHRLKGLARPVRVYQLCHRS 217
>gnl|CDD|227556 COG5231, VMA13, Vacuolar H+-ATPase V1 sector, subunit H [Energy
production and conversion].
Length = 432
Score = 34.9 bits (80), Expect = 0.11
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 400 LCYPSVVNLDDLTRRGLFISDIPLHDATRDLVLMSEQFEADYKLTRNLEFLTDKLQQTYR 459
LC V N+ D + +G S + L+D ++ + ++ E+ +D +L ++E + +L Q +
Sbjct: 255 LCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTK 314
Query: 460 EL 461
+L
Sbjct: 315 KL 316
>gnl|CDD|218079 pfam04420, CHD5, CHD5-like protein. Members of this family are
probably coiled-coil proteins that are similar to the
CHD5 (Congenital heart disease 5) protein. In
Saccharomyces cerevisiae this protein localises to the
ER and is thought to play a homeostatic role.
Length = 161
Score = 28.8 bits (65), Expect = 5.6
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 395 DLMIFLCYPSVVNLDDLTRRGLFISDIPLHDATRDLVLMSEQFE-ADY-KLTRNLEFLTD 452
D +++L Y V D + +I + R+L +S Q E A + KL R L+ LTD
Sbjct: 23 DKLLWLLYLKVPLSKDAKEQSQLRKEI--LELKRELNSISAQDEFAKWAKLNRKLDKLTD 80
Query: 453 KLQQTYRELEGEKQKTDRLL 472
+L++ +EL +K K +L
Sbjct: 81 ELEKLKKELTAQKSKFKWVL 100
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.415
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,573,536
Number of extensions: 3222178
Number of successful extensions: 2494
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2481
Number of HSP's successfully gapped: 17
Length of query: 635
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 532
Effective length of database: 6,369,140
Effective search space: 3388382480
Effective search space used: 3388382480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)