RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7227
(635 letters)
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling
protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A*
3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A*
3tf9_A* 3tfa_A*
Length = 189
Score = 174 bits (442), Expect = 3e-51
Identities = 64/200 (32%), Positives = 102/200 (51%), Gaps = 22/200 (11%)
Query: 6 YGFVNYALELLVLKTFGEETWEKINIFSVRICQLRSGAPGPENVWRGDVGENQFLVRQIY 65
YG VN A++ ++ K GE+TWE I + ++G + F+ + Y
Sbjct: 2 YGLVNKAIQDMISKHHGEDTWEAI--------KQKAGLED----------IDFFVGMEAY 43
Query: 66 EDEITYNLIGAAVGVLNIPANTILELFGKTFFEFCQDSGYDKILQVLGATPRDFLQVLNL 125
D++TY+L+GAA VL PA FG+ + + + GY ++L G + +F++ NL
Sbjct: 44 SDDVTYHLVGAASEVLGKPAEEWWIAFGEYWVTYTSEEGYGELLASAGDSLPEFME--NL 101
Query: 126 DALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKTVASKLHNTEV 185
D LH +G +P +R P+F C T ++ LHY S R GL +V+G++ + K T+V
Sbjct: 102 DNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLLHGLG-KRFQTKV 160
Query: 186 EVEILKTKEE-CDHVQFLIT 204
EV +E DH F I
Sbjct: 161 EVTQTAFRETGEDHDIFSIK 180
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein,
signaling protein; HET: HEM; 1.67A {Caldanaerobacter
subterraneus} PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A*
3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A*
3lah_A* 3lai_A*
Length = 188
Score = 159 bits (403), Expect = 1e-45
Identities = 25/199 (12%), Positives = 56/199 (28%), Gaps = 25/199 (12%)
Query: 6 YGFVNYALELLVLKTFGEETWEKINIFSVRICQLRSGAPGPENVWRGDVGENQFLVRQIY 65
G + +G + ++ G + +
Sbjct: 2 KGTFVGTWIKTLRDLYGNDVVDES--------LKSVGWEP----------DRVITPLEDI 43
Query: 66 EDEITYNLIGAAVGVLNIPANTILELFGKTFFEFCQDSGYDKILQVLGATPRDFLQVLNL 125
+D+ + N I G+ + + G +FL +
Sbjct: 44 DDDEVRRIFAKVSEKTGKNVNEIWREVGRQNIKTFS-EWFPSYFA--GRRLVNFLM--MM 98
Query: 126 DALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKTVASKLHNTEV 185
D +H L + G P A+ + Y S R + +G+++ + K E+
Sbjct: 99 DEVHLQLTKMIKGATPPRLIAKPVAKDAIEMEYVSKR-KMYDYFLGLIEGSS-KFFKEEI 156
Query: 186 EVEILKTKEECDHVQFLIT 204
VE ++ E+ + +
Sbjct: 157 SVEEVERGEKDGFSRLKVR 175
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET:
HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Length = 181
Score = 149 bits (377), Expect = 4e-42
Identities = 29/200 (14%), Positives = 66/200 (33%), Gaps = 25/200 (12%)
Query: 6 YGFVNYALELLVLKTFGEETWEKINIFSVRICQLRSGAPGPENVWRGDVGENQFLVRQIY 65
G + LE +V+ G W ++ + + + ++ + Y
Sbjct: 2 KGIIFNVLEDMVVAQCGMSVWNEL-------------------LEKHAPKDRVYVSAKSY 42
Query: 66 EDEITYNLIGAAVGVLNIPANTILELFGKTFFEFCQDSGYDKILQVLGATPRDFLQVLNL 125
+ ++++ LN+P +++ FG+ F D + + ++
Sbjct: 43 AESELFSIVQDVAQRLNMPIQDVVKAFGQFLFNGLASRHTD--VVDKFDDFTSLVMGIH- 99
Query: 126 DALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKTVASKLHNTEV 185
D +H + LY P + + L Y S R L G++ A + ++
Sbjct: 100 DVIHLEVNKLYHEPSLPHINGQLLPNNQIALRYSSPR-RLCFCAEGLLFGAA-QHFQQKI 157
Query: 186 EVEILKTKEE-CDHVQFLIT 204
++ DH +I
Sbjct: 158 QISHDTCMHTGADHCMLIIE 177
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 148 bits (375), Expect = 3e-41
Identities = 64/95 (67%), Positives = 73/95 (76%)
Query: 535 HKRPVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNP 594
HKRPVP KR+D VT+LFSGIVGF+ +C+ H +GAMKIV +LN LYT +D LTD +KNP
Sbjct: 1 HKRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNP 60
Query: 595 NVYKVETVGDKYMAVSGLPVSCQDHARCIARLALH 629
VYKVETVGDKYM VSGLP C HAR I LAL
Sbjct: 61 FVYKVETVGDKYMTVSGLPEPCIHHARSICHLALD 95
Score = 47.0 bits (112), Expect = 5e-06
Identities = 28/41 (68%), Positives = 33/41 (80%)
Query: 466 QKTDRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSR 506
+ T R L SP+N DPQF E+RGPV+MKGK EPM+VWFLSR
Sbjct: 159 EYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSR 199
>2p08_A Signal transduction histidine kinase; PAS-like domain, homologous
to domain in soluble guanylyl CY transferase; 2.00A
{Nostoc punctiforme} PDB: 2p04_A
Length = 115
Score = 140 bits (354), Expect = 1e-39
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 13/126 (10%)
Query: 293 ISPATFCRLFPFHIMFDRDLVIEQVGTALSRVIPCLGEMSNCTLTHILDPVRPHLDLTFD 352
+SP + FPFH F R+ I Q G L R+ P + + RP + + FD
Sbjct: 2 LSPELLAKAFPFHFAFSRNREIVQTGEVLERISP--EPLVGKLIEQHFQINRPKILIDFD 59
Query: 353 NILAHINTVYVLKTKPGIMQTGAEECYSTLRIKGQMLYVPESDLMIFLCYPSVVNLDDLT 412
I +++L+ MQ +KGQM+Y PE +++ FL P + + L
Sbjct: 60 AISKQPRALFILEFLHNGMQ-----------LKGQMMYQPEEEVIFFLGSPWITDTTSLA 108
Query: 413 RRGLFI 418
G+ +
Sbjct: 109 PLGIKL 114
Score = 46.0 bits (109), Expect = 2e-06
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 229 ISPATFCRLFPFHIMFDRD 247
+SP + FPFH F R+
Sbjct: 2 LSPELLAKAFPFHFAFSRN 20
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 134 bits (340), Expect = 3e-36
Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 537 RPVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNV 596
+ V K+F VT+LFS IVGF+ C+ + ++++TMLN LYT +D +V
Sbjct: 5 QVVQAKKFSNVTMLFSDIVGFTAICSQCS----PLQVITMLNALYTRFDQQCG---ELDV 57
Query: 597 YKVETVGDKYMAVSGLPVSCQDHARCIARLALH 629
YKVET+GD Y GL HA IA +AL
Sbjct: 58 YKVETIGDAYCVAGGLHKESDTHAVQIALMALK 90
Score = 31.1 bits (71), Expect = 0.76
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 3/36 (8%)
Query: 477 NEDPQFQFEYRGPVTMKGK---SEPMEVWFLSRGKE 509
+ P F F R + P FL ++
Sbjct: 162 KDCPGFVFTPRSREELPPNFPSEIPGICHFLDAYQQ 197
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 131 bits (332), Expect = 2e-35
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 537 RPVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNV 596
R + ++D ++LF+ IVGF++ ++ +V L++LY+ +D+L D +
Sbjct: 1 RNIIADKYDEASVLFADIVGFTERASSTA----PADLVRFLDRLYSAFDELVD---QHGL 53
Query: 597 YKVETVGDKYMAVSGLPVSCQDHARCIARLALH 629
K+E GD YM VSG+P DH + +A AL
Sbjct: 54 EKIEVSGDSYMVVSGVPRPRPDHTQALADFALD 86
Score = 37.2 bits (87), Expect = 0.008
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 479 DPQFQFEYRGPVTMKGKSEPMEVWFL 504
F RG + +KGK M W+L
Sbjct: 158 KDDFVLRERGHINVKGKGV-MRTWYL 182
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 125 bits (317), Expect = 2e-33
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 539 VPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYK 598
P + T+LFS IVGF++ + + +++ ++L++LY +D + + P +YK
Sbjct: 2 APAQEHPEATVLFSDIVGFTEIASRSS----PLEVXSLLDELYQRFDAAIE--EYPQLYK 55
Query: 599 VETVGDKYMAVSGLPVSCQDHARCIARLALH 629
VET+GD YM V + V C DHA + AL
Sbjct: 56 VETIGDAYMVVCNVTVPCDDHADVLLEFALR 86
Score = 40.4 bits (95), Expect = 7e-04
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 478 EDPQFQFEYRGPVTMKGKSEPMEVWFLSRGKE 509
+F+ RG +T+KGK M + LS +
Sbjct: 159 SKERFEIRERGNITVKGKGT-MRTYLLSPLER 189
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 114 bits (288), Expect = 3e-29
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 517 SVRLLYSVLPASVANELRHKRPVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTM 576
++ + + E + ++ D V++LF+ I GF+ + T A ++V
Sbjct: 8 AMEMKADINAKQ---EDMMFHKIYIQKHDNVSILFADIEGFTSLASQCT----AQELVMT 60
Query: 577 LNQLYTTYDDLTDPKKNPNVYKVETVGDKYMAVSGLPVSCQDHARCIARLALH 629
LN+L+ +D L + +++ +GD Y VSGLP + DHA C + +
Sbjct: 61 LNELFARFDKLAA---ENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGMD 110
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 113 bits (286), Expect = 6e-29
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 533 LRHKRPVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKK 592
L+++ + + +DCV ++F+ I F ++ +K ++ + +LN++ +DDL K
Sbjct: 2 LKNE-ELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPK 60
Query: 593 NPNVYKVETVGDKYMAVSGLPVS-CQDHARCIARLALH 629
V K++T+G YMA +GL Q+HA+ R +H
Sbjct: 61 FSGVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMH 98
Score = 37.6 bits (88), Expect = 0.006
Identities = 6/33 (18%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 478 EDPQFQFEYRGPVTMKGKSEPMEVWFLSRGKEY 510
+ + RG + +KGK + ++ +F++
Sbjct: 180 QTLGYTCTCRGIINVKGKGD-LKTYFVNTEMSR 211
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 88.5 bits (219), Expect = 6e-19
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 8/109 (7%)
Query: 519 RLLYSVLPASVANELRHKRPVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLN 578
L ++ N P VT+ F+ +VGF+ + ++ +
Sbjct: 188 MQLRHMMETEAVNAGERAAGKPLPGARQVTVAFADLVGFTQLGEVVSA----EELGHLAG 243
Query: 579 QLYTTYDDLTDPKKNPNVYKVETVGDKYMAVSGLPVSCQDHARCIARLA 627
+L DLT P V+ ++T+GD M V P D + +
Sbjct: 244 RLAGLARDLTAP----PVWFIKTIGDAVMLVCPDPAPLLDTVLKLVEVV 288
Score = 44.6 bits (105), Expect = 7e-05
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 470 RLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRGKE 509
R E FQ+ + GP ++G + ++ + RG
Sbjct: 340 REALGDAPEADGFQWSFAGPRRLRGIRGDVRLFRVRRGAT 379
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain,
signaling helix, S-helix, CGMP biosynthesis, cytoplasm,
GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Length = 66
Score = 76.7 bits (189), Expect = 1e-17
Identities = 47/114 (41%), Positives = 52/114 (45%), Gaps = 49/114 (42%)
Query: 423 LHDATRDLVLMSEQFEADYKLTRNLEFLTDKLQQTYRELEGEKQKTDRLLCSPDNEDPQF 482
H ATRDLVL+ EQF +YKLT+ LE LTD+LQ T R LE EK+KTD
Sbjct: 2 SHMATRDLVLLGEQFREEYKLTQELEMLTDRLQLTLRALEDEKKKTD------------- 48
Query: 483 QFEYRGPVTMKGKSEPMEVWFLSRGKEYITSLLSSVRLLYSVLPASVANELRHK 536
LLYSVLP SVANELRHK
Sbjct: 49 ------------------------------------TLLYSVLPPSVANELRHK 66
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 72.6 bits (178), Expect = 2e-14
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 537 RPVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNV 596
P + D VTL+F+ I + A H + + + L
Sbjct: 3 NRAPKEPTDPVTLIFTDIESSTALWAAH-----PDLMPDAVAAHHRMVRSLIG---RYKC 54
Query: 597 YKVETVGDKYMAVSGLPVSCQDHARCIARLALH 629
Y+V+TVGD +M S P + A+ + LH
Sbjct: 55 YEVKTVGDSFMIASKSPFAAVQLAQELQLCFLH 87
Score = 36.4 bits (84), Expect = 0.016
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 476 DNEDPQFQFEYRGPVTMKGKSEPMEVWFLS 505
+ Q G V ++G S+P++++ L+
Sbjct: 188 AEDRKQIDVTALGDVALRGVSDPVKMYQLN 217
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 1e-11
Identities = 93/626 (14%), Positives = 183/626 (29%), Gaps = 155/626 (24%)
Query: 101 QDSGYDKILQVLGATPRDFLQVLNLDALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYS 160
Y IL V F+ + + D E D ++
Sbjct: 14 HQYQYKDILSVF---EDAFVDNFDCKDVQDMP--------KSILSKEEIDH---IIMSKD 59
Query: 161 DRPGLEHIVIGIVKTVASKLHNTEVEVEILKTKEECDHVQFLI----TETSAPERVELPQ 216
G + + + E+ + ++ ++ +FL+ TE P +
Sbjct: 60 AVSGTLRL-FWTLLS-----KQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMY 112
Query: 217 IEEIETL-SLEPKISPATFCRLFPFHIMFDRDKVEVEILKTKEECDHV---------QFL 266
IE+ + L + + RL P+ K+ +L+ + + + ++
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYL------KLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 267 ITETSAPERVELPQIEEIETLSLEPKISPA-------TFCRLF--PFHIMFDRD----LV 313
+ +V+ +I L+L+ SP + D L
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 314 IEQVGTALSRVIPCLGEMSNCTLTHILDPVR--PHLDLTFDN---ILAHINTVYVLKTKP 368
I + L R++ NC L +L V+ + F+ IL + T +
Sbjct: 227 IHSIQAELRRLL-KSKPYENCLL--VLLNVQNAKAWN-AFNLSCKIL--LTTRFK----- 275
Query: 369 GIMQ--TGAEECYSTLRIKGQMLYVPESDLMIFLCYPSVVNL--DDLTRRGLFISDIPLH 424
+ + A + +L L E + L ++ DL R L + P
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEV-KSLLL---KYLDCRPQDLPREVLTTN--PRR 329
Query: 425 -----DATRDLVLMSEQFE--ADYKLTR----NLEFLT-DKLQQTYREL----EGEKQKT 468
++ RD + + ++ KLT +L L + ++ + L T
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 469 DRLL---CSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFL--SRGKEYITSLLSSVRLLYS 523
L D + S L + KE S+ S +Y
Sbjct: 390 ILLSLIWFDVIKSDVMVVVN-----KLHKYS-------LVEKQPKESTISIPS----IYL 433
Query: 524 VLPASVANELR-HKRPV----PPKRFDCVTLLFSGIVG-FSDYCATHTDSKGAMKIVTML 577
L + NE H+ V PK FD L+ + F + H + + +T+
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 578 NQLYTTY---------------------DDLTDPKK-------NPNVY--KVETVGDKYM 607
++ + + L K N Y V + D
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 608 AVSGLPVSCQDHARCIARLALHPKNS 633
+ + + + R+AL ++
Sbjct: 554 KIEENLICSKY--TDLLRIALMAEDE 577
Score = 54.5 bits (130), Expect = 9e-08
Identities = 85/538 (15%), Positives = 155/538 (28%), Gaps = 143/538 (26%)
Query: 56 ENQFLVRQIYEDEITYNLIGAAVGVLNIPANTILELFGKTFFEFCQDSGYDKILQVLGAT 115
E ++ T L +L+ + + F E Y ++ +
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWT---LLSKQEEMV-----QKFVEEVLRINYKFLMSPIKTE 101
Query: 116 PRDFLQVLNLDALHDHLGTLYPGMR--APSFRCTETDDGALVLHYYSDRPGLEHIVI--- 170
R + + LY + A L RP ++++I
Sbjct: 102 QRQ--PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-KNVLIDGV 158
Query: 171 -GIVKTV--ASKLHNTEVEVEILKTKEECDHVQFLIT--ETSAPERVELPQIEEIETLSL 225
G KT + +V+ ++ + F + ++PE V +E ++ L
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKM------DFKI-FWLNLKNCNSPETV----LEMLQKLLY 207
Query: 226 EPKISPATFCRL-FPFHIMFDRDKVEVE---ILKTK--EEC----DHVQ-------F--- 265
+I P R +I ++ E +LK+K E C +VQ F
Sbjct: 208 --QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 266 ---LITET---------SAPERVELPQIE------EIETLSL-------EPKISPATFCR 300
L+T T SA + E SL P+ P
Sbjct: 266 CKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 301 LFPFHI-MF---DRDLVI-----EQVGT-ALSRVIPCLGEMSNCTLTHILDP--VRPHL- 347
P + + RD + + V L+ +I E S L L+P R
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII----ESS---LNV-LEPAEYRKMFD 376
Query: 348 DLT-FD---NILAHINTVYVLKTKPGIMQTGAEECY-----------STLRIKG-QMLYV 391
L+ F +I + ++ + + + ST+ I +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 392 PESDLMIFL------CY--PSVVNLDDLTR---RGLFISDIPLHDATRDLVLMSEQFEAD 440
+ + L Y P + DDL F S I H + E+
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE---HPERMTLF 493
Query: 441 YKLTRNLEFLTDKLQQTYRELEGEKQKTDRLLCSPDNEDPQFQFEYRGPVTMKGKSEP 498
+ + FL K++ + L Q +F Y+ + ++P
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ--------QLKF-YKPYIC---DNDP 539
Score = 37.9 bits (87), Expect = 0.012
Identities = 52/382 (13%), Positives = 112/382 (29%), Gaps = 102/382 (26%)
Query: 10 NYALELLVLKTFGEETWEK--INIFSVRICQL----RSGAPGPENVWRGDVGENQFLVRQ 63
Y LLVL N F++ C++ R + V +
Sbjct: 242 PYENCLLVL----LNVQNAKAWNAFNLS-CKILLTTRF-----KQVTDFLSAATTTHISL 291
Query: 64 I------YEDEITYNLIGAAVGV--LNIP--ANTI----LELFGKTF------FEFCQDS 103
DE +L+ + ++P T L + ++ ++ +
Sbjct: 292 DHHSMTLTPDE-VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 104 GYDKILQVLGATPRDFLQVLNLD---ALHDHLGTLYPGMRAPSFRCTETDDGAL-VLHYY 159
DK+ ++ + L VL + D L P P+ L ++ +
Sbjct: 351 NCDKLTTIIES----SLNVLEPAEYRKMFDRLSVFPPSAHIPT--------ILLSLIWFD 398
Query: 160 SDRPGLEHIVIGIVKTVASKLHNTEVEVEI----LKTKEECD-----HVQFLITETSAPE 210
+ + +V + K + E + I L+ K + + H + +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV-------D 451
Query: 211 RVELPQIEEIETLSLEP--------------KISPATFCRLFPFHIMFDRDKVEVEILKT 256
+P+ + + L I LF + D +E +I
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-MVFLDFRFLEQKIRHD 510
Query: 257 KEEC-------DHVQFL------ITETSAPERVELPQIEEIET--LSLEPKISPATFCRL 301
+ +Q L I + + P+ L + I +E + + + L
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICD-NDPKYERL--VNAILDFLPKIEENLICSKYTDL 567
Query: 302 FPFHIMFDRDLVIEQVGTALSR 323
+M + + + E+ + R
Sbjct: 568 LRIALMAEDEAIFEEAHKQVQR 589
Score = 31.0 bits (69), Expect = 1.4
Identities = 30/189 (15%), Positives = 63/189 (33%), Gaps = 35/189 (18%)
Query: 446 NLEFLTDKLQQTYRELEG---EKQKTDRLLCS--PDNEDPQF-QFEYRGPVTMKGKSEPM 499
+++F T + Q Y+++ + + C D + E + K
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDN-FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 500 E--VW-FLSRGKEYITSLLSSV-RLLYSVLPASVANELRHKRPVPPKRFDCVTLLFSGIV 555
W LS+ +E + + V R+ Y L + + E R + + L++
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 556 GFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETV-GDKYMAVSG--- 611
F+ Y + +K+ L +L + NV + G + SG
Sbjct: 125 VFAKYNVSRLQPY--LKLRQALLEL----------RPAKNV----LIDG---VLGSGKTW 165
Query: 612 LPVS-CQDH 619
+ + C +
Sbjct: 166 VALDVCLSY 174
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 2e-07
Identities = 108/662 (16%), Positives = 183/662 (27%), Gaps = 234/662 (35%)
Query: 29 INIFSVRICQLRSGA-----PGPENVWRGDVGENQFLVRQIYED------EITYNLIGAA 77
++ +S R L G+ P + F+ Q+ E E T
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASF--------FIASQLQEQFNKILPEPTEGFAAD- 51
Query: 78 VGVLNIPANTILELFGKTFFEFC-------QDSGYDKILQ-VLGATPRDFLQVLNLDALH 129
+ P T EL GK F + + +D++L L +L+ D +H
Sbjct: 52 ----DEPT-TPAELVGK-FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE--GND-IH 102
Query: 130 DHLGTLYPGMRAPSFRCTETDDGALVLHYY-----SDRPG--------LEHIVIGIVKTV 176
L + E L+ +Y + RP + G
Sbjct: 103 ALAAKLLQENDTTLVKTKE-----LIKNYITARIMAKRPFDKKSNSALFRAVGEG----- 152
Query: 177 ASKLH-------NTEVEVEILKTKEECDHVQFLITETSAPERVELPQIEEI-ETLSLEPK 228
++L NT+ E L+ + +T +L I+ ETLS +
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRD----------LYQTYHVLVGDL--IKFSAETLSELIR 200
Query: 229 ISPATFCRLFP--FHIMFDRDKVEVEILKTKEECDHVQFLITETSAPERVELPQIEEIET 286
+ ++F +I+ E L+ +L+ S P + P I
Sbjct: 201 -TTLDAEKVFTQGLNIL--------EWLENPSNTPDKDYLL---SIP--ISCPL---IGV 243
Query: 287 LSLEPKISPATFCRLFPFH--IMFDR---------DLVIEQVGTALSRVIPCLGEMSNCT 335
+ L +L F + LV A++ ++ +
Sbjct: 244 IQL---AHYVVTAKLLGFTPGELRSYLKGATGHSQGLV---TAVAIA--------ETD-S 288
Query: 336 LTHILDPVRPHLDLTFDNILAHINTVYVLKTKPGIMQTGAEECYSTLRIKGQMLYVPESD 395
VR + + F I G Y P +
Sbjct: 289 WESFFVSVRKAITVLF-----FI---------------GVR---------CYEAY-PNTS 318
Query: 396 LMIFLCYPSVVNLDDLTRRGLFISDIP---LHDATRDLVLMSEQFEADYKLTRNLEFLTD 452
L PS++ +D +P L + +L E + D
Sbjct: 319 LP-----PSIL--EDSLENN---EGVPSPML--SISNL---------------TQEQVQD 351
Query: 453 KLQQTYRELEGEKQKTDRLLCSPDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSRG--KEY 510
+ +T L KQ L+ N GP P ++ L+ K
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKN------LVVSGP--------PQSLYGLNLTLRKAK 397
Query: 511 ITSLLSSVRLLYSVLPASVANELRHKR-PVPPKRFDCVTLLFSGIVGFSDYCATHTDSKG 569
S L R+ +S +R RF V F S +D
Sbjct: 398 APSGLDQSRIPFS------------ERKLKFSNRFLPVASPF-----HSHLLVPASD--- 437
Query: 570 AMKIVTMLNQLYTTYD--DLTDPKKNPNVYKVETVGDKYMAVSGLPVSCQDHARCIARLA 627
I L + +++ D+ P VY G +SG + CI RL
Sbjct: 438 --LINKDLVKNNVSFNAKDIQIP-----VYDTFD-GSDLRVLSGSIS--ERIVDCIIRLP 487
Query: 628 LH 629
+
Sbjct: 488 VK 489
Score = 49.7 bits (118), Expect = 3e-06
Identities = 65/381 (17%), Positives = 109/381 (28%), Gaps = 152/381 (39%)
Query: 62 RQIYEDEITYN-----LIGAAVGVLNIPANTILE---LFGKTFFEFCQDSGYDKILQVL- 112
R +Y+ TY+ LI + L+ T L+ +F + G + IL+ L
Sbjct: 174 RDLYQ---TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ---------GLN-ILEWLE 220
Query: 113 --GATP-RDFL-------------QVLNLDALHDHLGTLYPGMRAPSFRCTETDDGALVL 156
TP +D+L Q+ + LG PG + LV
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG-FTPGELRSYLKGATGHSQGLVT 279
Query: 157 HYYSDRPGLEHIVIGIVKTVASKLHNTEVEVEILKTKEECDHVQFLI----TETSAPERV 212
+ I + S + + +L F I E P
Sbjct: 280 A----------VAIAETDSWESFFVSVRKAITVL----------FFIGVRCYEA-YP-NT 317
Query: 213 ELPQIEEIETLSLEPKISPATFCRLFPFHIMF-----DRDKVEVEILKTKE---ECDHV- 263
LP I SLE + P M +++V+ + KT V
Sbjct: 318 SLPP--SILEDSLENNEGVPS-----P---MLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 264 --------QFLIT--------------ETSAPERVELPQIEEIETLSLE-PKISPATFCR 300
+++ + AP ++ +I S K S F
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP----FSERKLKFS-NRFLP 422
Query: 301 LF-PFH-------------------IMFD-RDLVI------------EQVGTALSRVIPC 327
+ PFH + F+ +D+ I G+ R++ C
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 328 LGEM-------SNCTLTHILD 341
+ + + THILD
Sbjct: 483 IIRLPVKWETTTQFKATHILD 503
Score = 41.2 bits (96), Expect = 0.001
Identities = 50/328 (15%), Positives = 90/328 (27%), Gaps = 126/328 (38%)
Query: 366 TKPGIMQTGAEECYSTLRIKGQMLYVPESDLMIFLCYPSVVNLDDLTRRGLFISDIPLHD 425
T+P + G+ E + L VP + + L + F +P +
Sbjct: 6 TRPLTLSHGSLE-HVLL--------VPTAS------FFIASQLQEQ-----FNKILP--E 43
Query: 426 ATRDLVLMSEQFEADYKL-TRNLEFLTDKLQQTYRELEGEKQKTDRLLCSPDNEDPQFQF 484
T ++ +L + L +++ ++ + + D++L E F
Sbjct: 44 PTEGFAA-DDEPTTPAELVGKFLGYVSSLVEP------SKVGQFDQVLNLCLTE-----F 91
Query: 485 EYRGPVTMKGKSEPMEVWFLSRGKEYITSLLSSVRLLYSVLPASVANELRH--------K 536
E +L G + I +L + + +++ K
Sbjct: 92 ENC---------------YL-EGND-IHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 537 RPVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTM-------------LNQLYTT 583
RP K + LF + +G ++V + L LY T
Sbjct: 135 RPFDKKSN---SALFRAV------------GEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 584 Y----DDL------------TDPKKNPNVY-----------KVETVGDK-YMAVSGLPVS 615
Y DL V+ DK Y+ P+S
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI--PIS 237
Query: 616 C------Q-DHARCIAR-LALHPKNSRK 635
C Q H A+ L P R
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRS 265
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 36.4 bits (85), Expect = 0.015
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 20/85 (23%)
Query: 547 VTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVE-TVGDK 605
+T+L S + GF+ + ++ ++V +LN + + D + T+ D+
Sbjct: 15 ITILTSDLRGFT----STSEGLNPEEVVKVLNIYFGK---MADV-----ITHHGGTI-DE 61
Query: 606 Y-----MAVSGLPVSCQDHA-RCIA 624
+ + + G P S QD A R +A
Sbjct: 62 FMGDGILVLFGAPTSQQDDALRAVA 86
Score = 30.6 bits (70), Expect = 0.98
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 481 QFQFEYRGPVTMKGKSEPMEVW 502
+ V KG +P+ +W
Sbjct: 169 RVHVNGNRTVQPKGVKDPVVIW 190
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
PDB: 1ybu_A*
Length = 184
Score = 35.7 bits (83), Expect = 0.019
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 478 EDPQFQFEYRGPVTMKGKSEPMEVWFLSR 506
+ +F RG +KG + L R
Sbjct: 149 AGSRHRFAERGEQELKGVPGRWRLCVLMR 177
Score = 32.2 bits (74), Expect = 0.31
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 547 VTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPK-KNPNVYKVETVGDK 605
T++F+ IVG + H + G + +L+ +D + + + +V T GD
Sbjct: 18 ATIMFTDIVGST----QHAAALGDDRWRDLLDN----HDTIVCHEIQRFGGREVNTAGDG 69
Query: 606 YMAVSGLPVSCQDHA----RCIARLALH 629
++A P + A +A L +
Sbjct: 70 FVATFTSPSAAIACADDIVDAVAALGIE 97
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 32.6 bits (75), Expect = 0.21
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 477 NEDPQFQFEYRGPVTMKGKSEPMEVW 502
+ F G +K + P+ VW
Sbjct: 143 QDRVSEPFTDLGLQKVKNITRPIRVW 168
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 31.8 bits (73), Expect = 0.55
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 22/87 (25%)
Query: 547 VTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVE-TVGDK 605
+T+LFS IVGF+ +++ + + +LN+ +T V++ + TV DK
Sbjct: 28 ITILFSDIVGFT----RMSNALQSQGVAELLNEYLGE---MTRA-----VFENQGTV-DK 74
Query: 606 Y-----MAVSGLP--VSCQDHA-RCIA 624
+ MA+ G P +S + R IA
Sbjct: 75 FVGDAIMALYGAPEEMSPSEQVRRAIA 101
Score = 29.5 bits (67), Expect = 2.6
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 467 KTDRLLCSPD--NEDPQFQFEYRGPVTMKGKSEPMEVW 502
+ ++ S P + R + +KG EP+
Sbjct: 173 APNSIMVSAMVAQYVPDEEIIKREFLELKGIDEPVMTC 210
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 31.4 bits (72), Expect = 0.65
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 21/90 (23%)
Query: 547 VTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVE-TVGDK 605
+T+ FS I GF+ ++ A + +LN ++ K T+ DK
Sbjct: 10 LTVFFSDIRGFT----ELSEELEAEALTDLLNNYLNE---MSKI-----ALKYGGTI-DK 56
Query: 606 Y-----MAVSGLPVS--CQDHARCIARLAL 628
+ M G P + + A + +
Sbjct: 57 FVGDCVMVFFGDPSTQGAKKDAVAAVSMGI 86
Score = 31.0 bits (71), Expect = 0.75
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 481 QFQFEYRGPVTMKGKSEPMEVW 502
+G + +KG S P++++
Sbjct: 167 VIMCRDKGQIAVKGFSRPVQIY 188
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A
{Neisseria meningitidis}
Length = 371
Score = 30.4 bits (69), Expect = 1.7
Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 4/66 (6%)
Query: 106 DKILQVLGATPRDFLQVLNLDALHDHLGTLYPGMRAPSFRCTETDDGALV-LHYYSDRPG 164
+L G + ++ L L DG + +++D G
Sbjct: 26 ADVLARSGMARDEIARITEKYGGEADLRHLRADQS---VHVLVGGDGGAREVQFFTDEDG 82
Query: 165 LEHIVI 170
++V
Sbjct: 83 ERNLVA 88
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 2.6
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 14/49 (28%)
Query: 293 ISPATFCRLFPFHIMFDRD----------LVIEQVGTALSRVIPCLGEM 331
+PA R P R+ +I Q AL +P G +
Sbjct: 1161 RTPAEMSR--PATT--TRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV 1205
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 4.4
Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 6/22 (27%)
Query: 464 EKQKTDRL-----LCSPDNEDP 480
EKQ +L L + D+ P
Sbjct: 18 EKQALKKLQASLKLYADDSA-P 38
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 28.3 bits (63), Expect = 8.4
Identities = 10/35 (28%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 122 VLNLDALHDHL-GTLYPGMRAPSFRCTETDDGALV 155
+L A H L GMR S D V
Sbjct: 453 LLTGQAKHQALASGFTVGMRFHSAPVVRVCDAKPV 487
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.415
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,706,558
Number of extensions: 590308
Number of successful extensions: 1116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1088
Number of HSP's successfully gapped: 47
Length of query: 635
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 536
Effective length of database: 3,937,614
Effective search space: 2110561104
Effective search space used: 2110561104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)