RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7227
         (635 letters)



>d1u55a_ d.278.1.1 (A:) Methyl-accepting chemotaxis protein
           {Thermoanaerobacter tengcongensis [TaxId: 119072]}
          Length = 188

 Score =  143 bits (362), Expect = 2e-40
 Identities = 26/201 (12%), Positives = 57/201 (28%), Gaps = 27/201 (13%)

Query: 6   YGFVNYALELLVLKTFGEETWEKINIFSVRICQLRSGAPGPENVWRGDVGENQFLVRQIY 65
            G +       +   +G +  ++             G             +      +  
Sbjct: 2   KGTIVGTWIKTLRDLYGNDVVDES--------LKSVGWEP----------DRVITPLEDI 43

Query: 66  EDEITYNLIGAAVGVLNIPANTILELFGKTFFEFCQDSGYDKILQVLGATPRDFLQVLNL 125
           +D+    +            N I    G+   +      +       G    +FL    +
Sbjct: 44  DDDEVRRIFAKVSEKTGKNVNEIWREVGRQNIKTFS-EWFPSYFA--GRRLVNFLM--MM 98

Query: 126 DALHDHLGTLYPGMRAPSFRCTETDDGALVLHYYSDRPGLEHIVIGIVKTVASKLHNTEV 185
           D +H  L  +  G   P          A+ + Y S R  +    +G+++  + K    E+
Sbjct: 99  DEVHLQLTKMIKGATPPRLIAKPVAKDAIEMEYVSKR-KMYDYFLGLIEGSS-KFFKEEI 156

Query: 186 EVEILKTKE--ECDHVQFLIT 204
            VE ++  E      ++  I 
Sbjct: 157 SVEEVERGEKDGFSRLKVRIK 177


>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 199

 Score = 73.0 bits (178), Expect = 2e-15
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 542 KRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVET 601
           + +DCV ++F+ I  F ++      +K  ++ + +LN++   +DDL    K   V K++T
Sbjct: 2   QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKT 61

Query: 602 VGDKYMAVSGLPVS-CQDHARCIARLALHPKN 632
           +G  YMA +GL     Q+HA+   R  +H   
Sbjct: 62  IGSTYMAATGLSAIPSQEHAQEPERQYMHIGT 93



 Score = 36.4 bits (83), Expect = 0.005
 Identities = 6/28 (21%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 478 EDPQFQFEYRGPVTMKGKSEPMEVWFLS 505
           +   +    RG + +KGK + ++ +F++
Sbjct: 172 QTLGYTCTCRGIINVKGKGD-LKTYFVN 198


>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase
           {Trypanosome (Trypanosoma brucei), different isoform
           [TaxId: 5691]}
          Length = 235

 Score = 68.4 bits (166), Expect = 1e-13
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 539 VPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYK 598
            P +  D VTL+F+ I   +   A H D      +   +   +     L         Y+
Sbjct: 5   APKEPTDPVTLIFTDIESSTALWAAHPD-----LMPDAVAAHHRMVRSLIG---RYKCYE 56

Query: 599 VETVGDKYMAVSGLPVSCQDHARCIARLALHPKN 632
           V+TVGD +M  S  P +    A+ +    LH   
Sbjct: 57  VKTVGDSFMIASKSPFAAVQLAQELQLCFLHHDW 90



 Score = 37.6 bits (86), Expect = 0.003
 Identities = 7/32 (21%), Positives = 16/32 (50%)

Query: 475 PDNEDPQFQFEYRGPVTMKGKSEPMEVWFLSR 506
              +  Q      G V ++G S+P++++ L+ 
Sbjct: 187 SAEDRKQIDVTALGDVALRGVSDPVKMYQLNT 218


>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis
           familiaris) [TaxId: 9615]}
          Length = 190

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 537 RPVPPKRFDCVTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNV 596
             +  ++ D V++LF+ I GF+   +  T    A ++V  LN+L+  +D         + 
Sbjct: 5   HKIYIQKHDNVSILFADIEGFTSLASQCT----AQELVMTLNELFARFD---KLAAENHC 57

Query: 597 YKVETVGDKYMAVSGLPVSCQDHARCIARLALHP 630
            +++ +GD Y  VSGLP +  DHA C   + +  
Sbjct: 58  LRIKILGDCYYCVSGLPEARADHAHCCVEMGMDM 91



 Score = 34.1 bits (77), Expect = 0.023
 Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 5/43 (11%)

Query: 467 KTDRLLCSPD-----NEDPQFQFEYRGPVTMKGKSEPMEVWFL 504
           K  R+  +       N D + +    G      K   +E + +
Sbjct: 147 KAGRIHITKATLSYLNGDYEVEPGCGGERNAYLKEHSIETFLI 189


>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis
           [TaxId: 118562]}
          Length = 197

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 547 VTLLFSGIVGFSDYCATHTDSKGAMKIVTMLNQLYTTYDDLTDPKKNPNVYKVETVGDKY 606
           +T+LFS IVGF+              +  +LN+            +       + VGD  
Sbjct: 8   ITILFSDIVGFTRMSNALQS----QGVAELLNEYLGEMTRAVFENQG---TVDKFVGDAI 60

Query: 607 MAVSGLPVSCQDHARC 622
           MA+ G P       + 
Sbjct: 61  MALYGAPEEMSPSEQV 76



 Score = 35.7 bits (81), Expect = 0.008
 Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 467 KTDRLLCSPDNED--PQFQFEYRGPVTMKGKSEPMEVWFLS 505
             + ++ S       P  +   R  + +KG  EP+    ++
Sbjct: 153 APNSIMVSAMVAQYVPDEEIIKREFLELKGIDEPVMTCVIN 193


>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria
           meningitidis [TaxId: 487]}
          Length = 282

 Score = 27.2 bits (59), Expect = 6.8
 Identities = 15/126 (11%), Positives = 35/126 (27%), Gaps = 9/126 (7%)

Query: 293 ISPATFCRLFPFH--------IMFDRDLVIEQVGTALSRVIPCLGEMSNCTLTHILDPVR 344
           IS  T+ RL            +  D D+++    T L         +       +     
Sbjct: 79  ISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEG 138

Query: 345 PHLDLTFDNILAHINT-VYVLKTKPGIMQTGAEECYSTLRIKGQMLYVPESDLMIFLCYP 403
               +   +   + N  V ++  K        +     +     ++   + D++  L   
Sbjct: 139 YKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFKG 198

Query: 404 SVVNLD 409
            V   +
Sbjct: 199 GVCYAN 204


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0436    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,370,136
Number of extensions: 113216
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 10
Length of query: 635
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 544
Effective length of database: 1,158,166
Effective search space: 630042304
Effective search space used: 630042304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.1 bits)